From c05d70639624ff601c4e74a1aee2c4fb24b4eacd Mon Sep 17 00:00:00 2001 From: Stella <30465823+stellaprins@users.noreply.github.com> Date: Mon, 9 Dec 2024 15:48:07 +0000 Subject: [PATCH 1/9] Feat 88 2 biomodels results table (#98) * Draft add remote outcomes Copasi and Tellurium to BioModels README table * adjustments to remote test handling in parse_biomodels.py * fix error handling in run_biosimulators_remotely * use utf-8 encoding when writing files in parse_biomodels and update README table with remote tellurium and copasi results --- BioModels/README.md | 2105 +++++++++++++++++----------------- BioModels/parse_biomodels.py | 55 +- utils/__init__.py | 23 +- 3 files changed, 1093 insertions(+), 1090 deletions(-) diff --git a/BioModels/README.md b/BioModels/README.md index 9ae6f6f6..5bf73244 100644 --- a/BioModels/README.md +++ b/BioModels/README.md @@ -7,1079 +7,1032 @@ Outputs to the Markdown Table below. 'valid-sbml-units' enforces strict unit checking, 'broken-ref' indicates that the SEDML file contained a broken source='model.xml' reference which was corrected to the name of the model's provided SBML file. -|Model|valid-sbml|valid-sbml-units|valid-sedml|broken-ref|tellurium| -|---|---|---|---|---|---| -|n=1073|
pass=1030 FAIL=43n_FAIL=33 n_NonSBML=10
|pass=785 NA=10 FAIL=278|
pass=297 NA=10 FAIL=766n_NoSEDML=679 n_FAIL=62 n_MultipleSEDMLs=25
|pass=67 NA=714 FAIL=292|
pass=282 NA=714 FAIL=77n_SEDMLfile=62 n_NoSBMLelement=4 n_other=3 n_CV_TOO_MUCH_WORK=2 n_CV_CONV_FAILURE=2 n_OutOfRange=3 n_CV_ILL_INPUT=1
| -|[BIOMD0000000001](https://www.ebi.ac.uk/biomodels/BIOMD0000000001)
Edelstein1996 - EPSP ACh event|
pass[BIOMD0000000001_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000001#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000002](https://www.ebi.ac.uk/biomodels/BIOMD0000000002)
Edelstein1996 - EPSP ACh species|
pass[BIOMD0000000002_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000002#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000003](https://www.ebi.ac.uk/biomodels/BIOMD0000000003)
Goldbeter1991 - Min Mit Oscil|
pass[BIOMD0000000003_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000003#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000004](https://www.ebi.ac.uk/biomodels/BIOMD0000000004)
Goldbeter1991 - Min Mit Oscil,Goldbeter1991 - Min Mit Oscil, Expl Inact
|
pass[BIOMD0000000004_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000004#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000005](https://www.ebi.ac.uk/biomodels/BIOMD0000000005)
Tyson1991 - Cell Cycle 6 var|
pass[BIOMD0000000005_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000005#Files)
|pass|
FAIL[BIOMD0000000005_SED-ML.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000005#Files)
|pass|
SEDMLfile```failed to validate SEDML file BIOMD0000000005_SED-ML.xml```
| -|[BIOMD0000000006](https://www.ebi.ac.uk/biomodels/BIOMD0000000006)
Tyson1991 - Cell Cycle 2 var|
pass[BIOMD0000000006_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000006#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000007](https://www.ebi.ac.uk/biomodels/BIOMD0000000007)
Novak1997 - Cell Cycle|
pass[BIOMD0000000007_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000007#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000008](https://www.ebi.ac.uk/biomodels/BIOMD0000000008)
Gardner1998 - Cell Cycle Goldbeter|
pass[BIOMD0000000008_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000008#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000009](https://www.ebi.ac.uk/biomodels/BIOMD0000000009)
Huang1996 - Ultrasensitivity iHuang1996 - Ultrasensitivity in MAPK cascade
|
pass[BIOMD0000000009_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000009#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000010](https://www.ebi.ac.uk/biomodels/BIOMD0000000010)
Kholodenko2000 - UltrasensitivKholodenko2000 - Ultrasensitivity and negative feedback bring oscillations in MAPK cascade
|
pass[BIOMD0000000010_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000010#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000011](https://www.ebi.ac.uk/biomodels/BIOMD0000000011)
Levchenko2000_MAPK_noScaffold|
pass[BIOMD0000000011_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000011#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000012](https://www.ebi.ac.uk/biomodels/BIOMD0000000012)
Elowitz2000 - Repressilator|
pass[BIOMD0000000012_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000012#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000013](https://www.ebi.ac.uk/biomodels/BIOMD0000000013)
Poolman2004_CalvinCycle|
pass[BIOMD0000000013_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000013#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000014](https://www.ebi.ac.uk/biomodels/BIOMD0000000014)
Levchenko2000_MAPK_Scaffold|
pass[BIOMD0000000014_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000014#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000015](https://www.ebi.ac.uk/biomodels/BIOMD0000000015)
Curto1998 - purine metabolism|
pass[BIOMD0000000015_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000015#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000016](https://www.ebi.ac.uk/biomodels/BIOMD0000000016)
Goldbeter1995_CircClock|
pass[BIOMD0000000016_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000016#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000017](https://www.ebi.ac.uk/biomodels/BIOMD0000000017)
Hoefnagel2002_PyruvateBranches|
pass[BIOMD0000000017_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000017#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000018](https://www.ebi.ac.uk/biomodels/BIOMD0000000018)
Morrison1989 - Folate Cycle|
pass[BIOMD0000000018_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000018#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000019](https://www.ebi.ac.uk/biomodels/BIOMD0000000019)
Schoeberl2002 - EGF MAPK|
pass[BIOMD0000000019_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000019#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000020](https://www.ebi.ac.uk/biomodels/BIOMD0000000020)
hodgkin-huxley squid-axon 1952|
pass[BIOMD0000000020_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000020#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000021](https://www.ebi.ac.uk/biomodels/BIOMD0000000021)
Leloup1999_CircClock|
pass[BIOMD0000000021_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000021#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000022](https://www.ebi.ac.uk/biomodels/BIOMD0000000022)
Ueda2001_CircClock|
pass[BIOMD0000000022_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000022#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000023](https://www.ebi.ac.uk/biomodels/BIOMD0000000023)
Rohwer2001_Sucrose|
pass[BIOMD0000000023_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000023#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000024](https://www.ebi.ac.uk/biomodels/BIOMD0000000024)
Scheper1999_CircClock|
pass[BIOMD0000000024_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000024#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000025](https://www.ebi.ac.uk/biomodels/BIOMD0000000025)
Smolen2002_CircClock|
pass[BIOMD0000000025_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000025#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000026](https://www.ebi.ac.uk/biomodels/BIOMD0000000026)
Markevich2004_MAPK_orderedElementary|
pass[BIOMD0000000026_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000026#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000027](https://www.ebi.ac.uk/biomodels/BIOMD0000000027)
Markevich2004 - MAPK double phMarkevich2004 - MAPK double phosphorylation, ordered Michaelis-Menton
|
pass[BIOMD0000000027_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000027#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000028](https://www.ebi.ac.uk/biomodels/BIOMD0000000028)
Markevich2004_MAPK_phosphoRandMarkevich2004_MAPK_phosphoRandomElementary
|
pass[BIOMD0000000028_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000028#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000029](https://www.ebi.ac.uk/biomodels/BIOMD0000000029)
Markevich2004_MAPK_phosphoRandomMM|
pass[BIOMD0000000029_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000029#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000030](https://www.ebi.ac.uk/biomodels/BIOMD0000000030)
Markevich2004_MAPK_AllRandomElMarkevich2004_MAPK_AllRandomElementary
|
pass[BIOMD0000000030_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000030#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000031](https://www.ebi.ac.uk/biomodels/BIOMD0000000031)
Markevich2004_MAPK_orderedMM2kinases|
pass[BIOMD0000000031_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000031#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000032](https://www.ebi.ac.uk/biomodels/BIOMD0000000032)
Kofahl2004_PheromonePathway|
pass[BIOMD0000000032_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000032#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000033](https://www.ebi.ac.uk/biomodels/BIOMD0000000033)
Brown2004 - NGF and EGF signaling|
pass[BIOMD0000000033_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000033#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000034](https://www.ebi.ac.uk/biomodels/BIOMD0000000034)
Smolen2004_CircClock|
pass[BIOMD0000000034_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000034#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000035](https://www.ebi.ac.uk/biomodels/BIOMD0000000035)
Vilar2002_Oscillator|
pass[BIOMD0000000035_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000035#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000036](https://www.ebi.ac.uk/biomodels/BIOMD0000000036)
Tyson1999_CircClock|
pass[BIOMD0000000036_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000036#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000037](https://www.ebi.ac.uk/biomodels/BIOMD0000000037)
Marwan2003 - Genetics, regulatMarwan2003 - Genetics, regulatory hierarchy between genes
|
pass[BIOMD0000000037_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000037#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000038](https://www.ebi.ac.uk/biomodels/BIOMD0000000038)
Rohwer2000_Phosphotransferase_System|
pass[BIOMD0000000038_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000038#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000039](https://www.ebi.ac.uk/biomodels/BIOMD0000000039)
Marhl2000_CaOscillations|
pass[BIOMD0000000039_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000039#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000040](https://www.ebi.ac.uk/biomodels/BIOMD0000000040)
Field1974_Oregonator|
pass[BIOMD0000000040_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000040#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000041](https://www.ebi.ac.uk/biomodels/BIOMD0000000041)
Kongas2007 - Creatine Kinase iKongas2007 - Creatine Kinase in energy metabolic signaling in muscle
|
pass[BIOMD0000000041_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000041#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000042](https://www.ebi.ac.uk/biomodels/BIOMD0000000042)
Nielsen1998_Glycolysis|
pass[BIOMD0000000042_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000042#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000043](https://www.ebi.ac.uk/biomodels/BIOMD0000000043)
Borghans1997 - Calcium OscillaBorghans1997 - Calcium Oscillation - Model 1
|
pass[BIOMD0000000043_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000043#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000044](https://www.ebi.ac.uk/biomodels/BIOMD0000000044)
Borghans1997 - Calcium OscillaBorghans1997 - Calcium Oscillation - Model 2
|
pass[BIOMD0000000044_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000044#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000045](https://www.ebi.ac.uk/biomodels/BIOMD0000000045)
Borghans1997 - Calcium OscillaBorghans1997 - Calcium Oscillation - Model 3
|
pass[BIOMD0000000045_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000045#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000046](https://www.ebi.ac.uk/biomodels/BIOMD0000000046)
Olsen2003_peroxidase|
pass[BIOMD0000000046_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000046#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000047](https://www.ebi.ac.uk/biomodels/BIOMD0000000047)
Oxhamre2005_Ca_oscillation|
pass[BIOMD0000000047_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000047#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000048](https://www.ebi.ac.uk/biomodels/BIOMD0000000048)
Kholodenko1999 - EGFR signaling|
pass[BIOMD0000000048_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000048#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000049](https://www.ebi.ac.uk/biomodels/BIOMD0000000049)
Sasagawa2005_MAPK|
pass[BIOMD0000000049_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000049#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000050](https://www.ebi.ac.uk/biomodels/BIOMD0000000050)
Martins2003_AmadoriDegradation|
pass[BIOMD0000000050_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000050#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000051](https://www.ebi.ac.uk/biomodels/BIOMD0000000051)
Chassagnole2002_Carbon_Metabolism|
FAIL[BIOMD0000000051_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000051#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000052](https://www.ebi.ac.uk/biomodels/BIOMD0000000052)
Brands2002 - Monosaccharide-caBrands2002 - Monosaccharide-casein systems
|
pass[BIOMD0000000052_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000052#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000053](https://www.ebi.ac.uk/biomodels/BIOMD0000000053)
Ferreira2003_CML_generation2|
pass[BIOMD0000000053_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000053#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000054](https://www.ebi.ac.uk/biomodels/BIOMD0000000054)
Ataullahkhanov1996_Adenylate|
pass[BIOMD0000000054_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000054#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000055](https://www.ebi.ac.uk/biomodels/BIOMD0000000055)
Locke2005 - Circadian Clock|
pass[BIOMD0000000055_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000055#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000056](https://www.ebi.ac.uk/biomodels/BIOMD0000000056)
Chen2004 - Cell Cycle Regulation|
pass[BIOMD0000000056_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000056#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000057](https://www.ebi.ac.uk/biomodels/BIOMD0000000057)
Sneyd2002_IP3_Receptor|
pass[BIOMD0000000057_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000057#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000058](https://www.ebi.ac.uk/biomodels/BIOMD0000000058)
Bindschadler2001_coupled_Ca_osBindschadler2001_coupled_Ca_oscillators
|
pass[BIOMD0000000058_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000058#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000059](https://www.ebi.ac.uk/biomodels/BIOMD0000000059)
Fridlyand2003_Calcium_flux|
pass[BIOMD0000000059_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000059#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000060](https://www.ebi.ac.uk/biomodels/BIOMD0000000060)
Keizer1996_Ryanodine_receptor_Keizer1996_Ryanodine_receptor_adaptation
|
FAIL[BIOMD0000000060_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000060#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000061](https://www.ebi.ac.uk/biomodels/BIOMD0000000061)
Hynne2001_Glycolysis|
pass[BIOMD0000000061_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000061#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000062](https://www.ebi.ac.uk/biomodels/BIOMD0000000062)
Bhartiya2003_Tryptophan_operon|
pass[BIOMD0000000062_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000062#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000063](https://www.ebi.ac.uk/biomodels/BIOMD0000000063)
Galazzo1990_FermentationPathwaGalazzo1990_FermentationPathwayKinetics
|
pass[BIOMD0000000063_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000063#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000064](https://www.ebi.ac.uk/biomodels/BIOMD0000000064)
Teusink2000_Glycolysis|
FAIL[BIOMD0000000064_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000064#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000065](https://www.ebi.ac.uk/biomodels/BIOMD0000000065)
Yildirim2003_Lac_Operon|
pass[BIOMD0000000065_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000065#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000066](https://www.ebi.ac.uk/biomodels/BIOMD0000000066)
Chassagnole2001_Threonine Synthesis|
pass[BIOMD0000000066_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000066#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000067](https://www.ebi.ac.uk/biomodels/BIOMD0000000067)
Fung2005_Metabolic_Oscillator|
pass[BIOMD0000000067_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000067#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000068](https://www.ebi.ac.uk/biomodels/BIOMD0000000068)
Curien2003_MetThr_synthesis|
pass[BIOMD0000000068_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000068#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000069](https://www.ebi.ac.uk/biomodels/BIOMD0000000069)
Fuss2006_MitoticActivation|
pass[BIOMD0000000069_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000069#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000070](https://www.ebi.ac.uk/biomodels/BIOMD0000000070)
Holzhutter2004_Erythrocyte_MetHolzhutter2004_Erythrocyte_Metabolism
|
pass[BIOMD0000000070_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000070#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000071](https://www.ebi.ac.uk/biomodels/BIOMD0000000071)
Bakker2001_Glycolysis|
pass[BIOMD0000000071_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000071#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000072](https://www.ebi.ac.uk/biomodels/BIOMD0000000072)
Yi2003_GproteinCycle|
pass[BIOMD0000000072_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000072#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000073](https://www.ebi.ac.uk/biomodels/BIOMD0000000073)
Leloup2003_CircClock_DD|
pass[BIOMD0000000073_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000073#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000074](https://www.ebi.ac.uk/biomodels/BIOMD0000000074)
Leloup2003_CircClock_DD_REV-ERBalpha|
pass[BIOMD0000000074_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000074#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000075](https://www.ebi.ac.uk/biomodels/BIOMD0000000075)
Xu2003 - Phosphoinositide turnover|
pass[BIOMD0000000075_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000075#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000076](https://www.ebi.ac.uk/biomodels/BIOMD0000000076)
Cronwright2002_Glycerol_Synthesis|
pass[BIOMD0000000076_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000076#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000077](https://www.ebi.ac.uk/biomodels/BIOMD0000000077)
Blum2000_LHsecretion_1|
pass[BIOMD0000000077_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000077#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000078](https://www.ebi.ac.uk/biomodels/BIOMD0000000078)
Leloup2003_CircClock_LD|
pass[BIOMD0000000078_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000078#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000079](https://www.ebi.ac.uk/biomodels/BIOMD0000000079)
Goldbeter2006_weightCycling|
pass[BIOMD0000000079_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000079#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000080](https://www.ebi.ac.uk/biomodels/BIOMD0000000080)
Thomsen1989_AdenylateCyclase|
pass[BIOMD0000000080_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000080#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000081](https://www.ebi.ac.uk/biomodels/BIOMD0000000081)
Suh2004_KCNQ_Regulation|
pass[BIOMD0000000081_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000081#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000082](https://www.ebi.ac.uk/biomodels/BIOMD0000000082)
Thomsen1988_AdenylateCyclase_IThomsen1988_AdenylateCyclase_Inhibition
|
pass[BIOMD0000000082_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000082#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000083](https://www.ebi.ac.uk/biomodels/BIOMD0000000083)
Leloup2003_CircClock_LD_REV-ERBalpha|
pass[BIOMD0000000083_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000083#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000084](https://www.ebi.ac.uk/biomodels/BIOMD0000000084)
Hornberg2005_ERKcascade|
pass[BIOMD0000000084_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000084#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000085](https://www.ebi.ac.uk/biomodels/BIOMD0000000085)
Maurya2005_GTPaseCycle_reducedOrder|
pass[BIOMD0000000085_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000085#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000086](https://www.ebi.ac.uk/biomodels/BIOMD0000000086)
Bornheimer2004_GTPaseCycle|
pass[BIOMD0000000086_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000086#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000087](https://www.ebi.ac.uk/biomodels/BIOMD0000000087)
Proctor2006_telomere|
pass[BIOMD0000000087_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000087#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000088](https://www.ebi.ac.uk/biomodels/BIOMD0000000088)
Maeda2006_MyosinPhosphorylation|
pass[BIOMD0000000088_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000088#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000089](https://www.ebi.ac.uk/biomodels/BIOMD0000000089)
Locke2006_CircClock_LL|
pass[BIOMD0000000089_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000089#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000090](https://www.ebi.ac.uk/biomodels/BIOMD0000000090)
Wolf2001_Respiratory_Oscillations|
pass[BIOMD0000000090_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000090#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000091](https://www.ebi.ac.uk/biomodels/BIOMD0000000091)
Proctor2005 - Actions of chapeProctor2005 - Actions of chaperones and their role in ageing
|
pass[BIOMD0000000091_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000091#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000092](https://www.ebi.ac.uk/biomodels/BIOMD0000000092)
Fuentes2005_ZymogenActivation|
pass[BIOMD0000000092_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000092#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000093](https://www.ebi.ac.uk/biomodels/BIOMD0000000093)
Yamada2003_JAK_STAT_pathway|
pass[BIOMD0000000093_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000093#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000094](https://www.ebi.ac.uk/biomodels/BIOMD0000000094)
Yamada2003_JAK_STAT_SOCS1_knockout|
pass[BIOMD0000000094_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000094#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000095](https://www.ebi.ac.uk/biomodels/BIOMD0000000095)
Zeilinger2006_PRR7-PRR9-Y|
pass[BIOMD0000000095_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000095#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000096](https://www.ebi.ac.uk/biomodels/BIOMD0000000096)
Zeilinger2006_PRR7-PRR9light-Y|
FAIL[BIOMD0000000096_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000096#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000097](https://www.ebi.ac.uk/biomodels/BIOMD0000000097)
Zeilinger2006_PRR7-PRR9light-Yprime|
FAIL[BIOMD0000000097_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000097#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000098](https://www.ebi.ac.uk/biomodels/BIOMD0000000098)
Goldbeter1990_CalciumSpike_CICR|
pass[BIOMD0000000098_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000098#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000099](https://www.ebi.ac.uk/biomodels/BIOMD0000000099)
Laub1998_SpontaneousOscillations|
pass[BIOMD0000000099_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000099#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000100](https://www.ebi.ac.uk/biomodels/BIOMD0000000100)
Rozi2003_GlycogenPhosphorylaseRozi2003_GlycogenPhosphorylase_Activation
|
pass[BIOMD0000000100_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000100#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000101](https://www.ebi.ac.uk/biomodels/BIOMD0000000101)
Vilar2006_TGFbeta|
pass[BIOMD0000000101_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000101#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000102](https://www.ebi.ac.uk/biomodels/BIOMD0000000102)
Legewie2006_apoptosis_WT|
pass[BIOMD0000000102_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000102#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000103](https://www.ebi.ac.uk/biomodels/BIOMD0000000103)
Legewie2006_apoptosis_NC|
pass[BIOMD0000000103_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000103#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000104](https://www.ebi.ac.uk/biomodels/BIOMD0000000104)
Klipp2002_MetabolicOptimizatioKlipp2002_MetabolicOptimization_linearPathway(n=2)
|
pass[BIOMD0000000104_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000104#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000105](https://www.ebi.ac.uk/biomodels/BIOMD0000000105)
Proctor2007 - Age related declProctor2007 - Age related decline of proteolysis, ubiquitin-proteome system
|
pass[BIOMD0000000105_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000105#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000106](https://www.ebi.ac.uk/biomodels/BIOMD0000000106)
Yang2007_ArachidonicAcid|
pass[BIOMD0000000106_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000106#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000107](https://www.ebi.ac.uk/biomodels/BIOMD0000000107)
Novak1993 - Cell cycle M-phaseNovak1993 - Cell cycle M-phase control
|
pass[BIOMD0000000107_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000107#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000108](https://www.ebi.ac.uk/biomodels/BIOMD0000000108)
Kowald2006_SOD|
pass[BIOMD0000000108_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000108#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000109](https://www.ebi.ac.uk/biomodels/BIOMD0000000109)
Haberichter2007_cellcycle|
pass[BIOMD0000000109_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000109#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000110](https://www.ebi.ac.uk/biomodels/BIOMD0000000110)
Qu2003_CellCycle|
pass[BIOMD0000000110_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000110#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000111](https://www.ebi.ac.uk/biomodels/BIOMD0000000111)
Novak2001_FissionYeast_CellCycle|
pass[BIOMD0000000111_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000111#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000112](https://www.ebi.ac.uk/biomodels/BIOMD0000000112)
Clarke2006_Smad_signalling|
pass[BIOMD0000000112_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000112#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000113](https://www.ebi.ac.uk/biomodels/BIOMD0000000113)
Dupont1992_Ca_dpt_protein_phospho|
pass[BIOMD0000000113_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000113#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000114](https://www.ebi.ac.uk/biomodels/BIOMD0000000114)
Somogyi1990_CaOscillations|
pass[BIOMD0000000114_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000114#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000115](https://www.ebi.ac.uk/biomodels/BIOMD0000000115)
Somogyi1990_CaOscillations_SinSomogyi1990_CaOscillations_SingleCaSpike
|
pass[BIOMD0000000115_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000115#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000116](https://www.ebi.ac.uk/biomodels/BIOMD0000000116)
McClean2007_CrossTalk|
pass[BIOMD0000000116_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000116#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000117](https://www.ebi.ac.uk/biomodels/BIOMD0000000117)
Dupont1991_CaOscillation|
pass[BIOMD0000000117_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000117#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000118](https://www.ebi.ac.uk/biomodels/BIOMD0000000118)
Golomb2006_SomaticBursting|
pass[BIOMD0000000118_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000118#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000119](https://www.ebi.ac.uk/biomodels/BIOMD0000000119)
Golomb2006_SomaticBursting_nonGolomb2006_SomaticBursting_nonzero[Ca]
|
pass[BIOMD0000000119_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000119#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000120](https://www.ebi.ac.uk/biomodels/BIOMD0000000120)
Chan2004_TCell_receptor_activation|
pass[BIOMD0000000120_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000120#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000121](https://www.ebi.ac.uk/biomodels/BIOMD0000000121)
Clancy2001_Kchannel|
pass[BIOMD0000000121_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000121#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000122](https://www.ebi.ac.uk/biomodels/BIOMD0000000122)
Fisher2006_Ca_Oscillation_dpdnFisher2006_Ca_Oscillation_dpdnt_NFAT_dynamics
|
pass[BIOMD0000000122_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000122#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000123](https://www.ebi.ac.uk/biomodels/BIOMD0000000123)
Fisher2006_NFAT_Activation|
pass[BIOMD0000000123_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000123#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000124](https://www.ebi.ac.uk/biomodels/BIOMD0000000124)
Wu2006_K+Channel|
pass[BIOMD0000000124_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000124#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000125](https://www.ebi.ac.uk/biomodels/BIOMD0000000125)
Komarova2005_TheoreticalFramewKomarova2005_TheoreticalFramework_BasicArchitecture
|
pass[BIOMD0000000125_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000125#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000126](https://www.ebi.ac.uk/biomodels/BIOMD0000000126)
Clancy2002_CardiacSodiumChannel_WT|
pass[BIOMD0000000126_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000126#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000127](https://www.ebi.ac.uk/biomodels/BIOMD0000000127)
Izhikevich2003_SpikingNeuron|
pass[BIOMD0000000127_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000127#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000128](https://www.ebi.ac.uk/biomodels/BIOMD0000000128)
Bertram2006_Endothelin|
pass[BIOMD0000000128_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000128#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000129](https://www.ebi.ac.uk/biomodels/BIOMD0000000129)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_inhibitionInducedSpiking
|
pass[BIOMD0000000129_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000129#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000130](https://www.ebi.ac.uk/biomodels/BIOMD0000000130)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_integrator
|
pass[BIOMD0000000130_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000130#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000131](https://www.ebi.ac.uk/biomodels/BIOMD0000000131)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_reboundBurst
|
pass[BIOMD0000000131_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000131#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000132](https://www.ebi.ac.uk/biomodels/BIOMD0000000132)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_reboundSpike
|
pass[BIOMD0000000132_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000132#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000133](https://www.ebi.ac.uk/biomodels/BIOMD0000000133)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_resonator
|
pass[BIOMD0000000133_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000133#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000134](https://www.ebi.ac.uk/biomodels/BIOMD0000000134)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_SpikeLatency
|
pass[BIOMD0000000134_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000134#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000135](https://www.ebi.ac.uk/biomodels/BIOMD0000000135)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_subthresholdOscillations
|
pass[BIOMD0000000135_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000135#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000136](https://www.ebi.ac.uk/biomodels/BIOMD0000000136)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_thresholdVariability
|
pass[BIOMD0000000136_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000136#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000137](https://www.ebi.ac.uk/biomodels/BIOMD0000000137)
Sedaghat2002_InsulinSignallingSedaghat2002_InsulinSignalling_noFeedback
|
pass[BIOMD0000000137_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000137#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000138](https://www.ebi.ac.uk/biomodels/BIOMD0000000138)
Tabak2007_dopamine|
pass[BIOMD0000000138_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000138#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000139](https://www.ebi.ac.uk/biomodels/BIOMD0000000139)
Hoffmann2002_KnockOut_IkBNFkB_Hoffmann2002_KnockOut_IkBNFkB_Signaling
|
pass[BIOMD0000000139_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000139#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000140](https://www.ebi.ac.uk/biomodels/BIOMD0000000140)
Hoffmann2002_WT_IkBNFkB_Signaling|
pass[BIOMD0000000140_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000140#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000141](https://www.ebi.ac.uk/biomodels/BIOMD0000000141)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_Class1Excitable
|
pass[BIOMD0000000141_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000141#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000142](https://www.ebi.ac.uk/biomodels/BIOMD0000000142)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_Class2Excitable
|
pass[BIOMD0000000142_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000142#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000143](https://www.ebi.ac.uk/biomodels/BIOMD0000000143)
Olsen2003_neutrophil_oscillatoOlsen2003_neutrophil_oscillatory_metabolism
|
pass[BIOMD0000000143_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000143#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000144](https://www.ebi.ac.uk/biomodels/BIOMD0000000144)
Calzone2007_CellCycle|
pass[BIOMD0000000144_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000144#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000145](https://www.ebi.ac.uk/biomodels/BIOMD0000000145)
Wang2007 - ATP induced intraceWang2007 - ATP induced intracellular Calcium Oscillation
|
pass[BIOMD0000000145_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000145#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000146](https://www.ebi.ac.uk/biomodels/BIOMD0000000146)
Hatakeyama2003_MAPK|
pass[BIOMD0000000146_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000146#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000147](https://www.ebi.ac.uk/biomodels/BIOMD0000000147)
ODea2007_IkappaB|
pass[BIOMD0000000147_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000147#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000148](https://www.ebi.ac.uk/biomodels/BIOMD0000000148)
Komarova2003_BoneRemodeling|
pass[BIOMD0000000148_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000148#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000149](https://www.ebi.ac.uk/biomodels/BIOMD0000000149)
Kim2007 - Crosstalk between WnKim2007 - Crosstalk between Wnt and ERK pathways
|
pass[BIOMD0000000149_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000149#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000150](https://www.ebi.ac.uk/biomodels/BIOMD0000000150)
Morris2002_CellCycle_CDK2Cyclin|
pass[BIOMD0000000150_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000150#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000151](https://www.ebi.ac.uk/biomodels/BIOMD0000000151)
Singh2006_IL6_Signal_Transduction|
pass[BIOMD0000000151_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000151#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000152](https://www.ebi.ac.uk/biomodels/BIOMD0000000152)
Fernandez2006_ModelA|
pass[BIOMD0000000152_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000152#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000153](https://www.ebi.ac.uk/biomodels/BIOMD0000000153)
Fernandez2006_ModelB|
pass[BIOMD0000000153_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000153#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000154](https://www.ebi.ac.uk/biomodels/BIOMD0000000154)
Zatorsky2006_p53_Model3|
pass[BIOMD0000000154_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000154#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000155](https://www.ebi.ac.uk/biomodels/BIOMD0000000155)
Zatorsky2006_p53_Model6|
pass[BIOMD0000000155_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000155#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000156](https://www.ebi.ac.uk/biomodels/BIOMD0000000156)
Zatorsky2006_p53_Model5|
pass[BIOMD0000000156_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000156#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000157](https://www.ebi.ac.uk/biomodels/BIOMD0000000157)
Zatorsky2006_p53_Model4|
pass[BIOMD0000000157_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000157#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000158](https://www.ebi.ac.uk/biomodels/BIOMD0000000158)
Zatorsky2006_p53_Model2|
pass[BIOMD0000000158_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000158#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000159](https://www.ebi.ac.uk/biomodels/BIOMD0000000159)
Zatorsky2006_p53_Model1|
pass[BIOMD0000000159_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000159#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000160](https://www.ebi.ac.uk/biomodels/BIOMD0000000160)
Xie2007_CircClock|
pass[BIOMD0000000160_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000160#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000161](https://www.ebi.ac.uk/biomodels/BIOMD0000000161)
Eungdamrong2007_Ras_Activation|
pass[BIOMD0000000161_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000161#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000162](https://www.ebi.ac.uk/biomodels/BIOMD0000000162)
Hernjak2005_Calcium_Signaling|
pass[BIOMD0000000162_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000162#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000163](https://www.ebi.ac.uk/biomodels/BIOMD0000000163)
Zi2007_TGFbeta_signaling|
pass[BIOMD0000000163_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000163#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000164](https://www.ebi.ac.uk/biomodels/BIOMD0000000164)
SmithAE2002_RanTransport|
FAIL[BIOMD0000000164_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000164#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000165](https://www.ebi.ac.uk/biomodels/BIOMD0000000165)
Saucerman2006_PKA|
pass[BIOMD0000000165_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000165#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000166](https://www.ebi.ac.uk/biomodels/BIOMD0000000166)
Zhu2007_TF_modulated_by_Calcium|
pass[BIOMD0000000166_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000166#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000167](https://www.ebi.ac.uk/biomodels/BIOMD0000000167)
Mayya2005_STATmodule|
pass[BIOMD0000000167_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000167#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000168](https://www.ebi.ac.uk/biomodels/BIOMD0000000168)
Obeyesekere1999_CellCycle|
pass[BIOMD0000000168_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000168#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000169](https://www.ebi.ac.uk/biomodels/BIOMD0000000169)
Aguda1999_CellCycle|
pass[BIOMD0000000169_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000169#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000170](https://www.ebi.ac.uk/biomodels/BIOMD0000000170)
Weimann2004_CircadianOscillator|
pass[BIOMD0000000170_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000170#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000171](https://www.ebi.ac.uk/biomodels/BIOMD0000000171)
Leloup1998_CircClock_LD|
pass[BIOMD0000000171_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000171#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000172](https://www.ebi.ac.uk/biomodels/BIOMD0000000172)
Pritchard2002_glycolysis|
pass[BIOMD0000000172_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000172#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000173](https://www.ebi.ac.uk/biomodels/BIOMD0000000173)
Schmierer_2008_Smad_Tgfb|
pass[BIOMD0000000173_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000173#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000174](https://www.ebi.ac.uk/biomodels/BIOMD0000000174)
Del_Conte_Zerial2008_Rab5_Rab7Del_Conte_Zerial2008_Rab5_Rab7_cut_out_switch
|
pass[BIOMD0000000174_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000174#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000175](https://www.ebi.ac.uk/biomodels/BIOMD0000000175)
Birtwistle2007_ErbB_Signalling|
pass[BIOMD0000000175_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000175#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000176](https://www.ebi.ac.uk/biomodels/BIOMD0000000176)
Conant2007_WGD_glycolysis_2A3AB|
pass[BIOMD0000000176_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000176#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000177](https://www.ebi.ac.uk/biomodels/BIOMD0000000177)
Conant2007_glycolysis_2C|
pass[BIOMD0000000177_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000177#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000178](https://www.ebi.ac.uk/biomodels/BIOMD0000000178)
Lebeda2008 - BoTN Paralysis (4Lebeda2008 - BoTN Paralysis (4 step model)
|
pass[BIOMD0000000178_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000178#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000179](https://www.ebi.ac.uk/biomodels/BIOMD0000000179)
Kim2007_CellularMemory_AsymmetKim2007_CellularMemory_AsymmetricModel
|
pass[BIOMD0000000179_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000179#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000180](https://www.ebi.ac.uk/biomodels/BIOMD0000000180)
Kim2007_CellularMemory_SymmetrKim2007_CellularMemory_SymmetricModel
|
pass[BIOMD0000000180_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000180#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000181](https://www.ebi.ac.uk/biomodels/BIOMD0000000181)
Sriram2007_CellCycle|
pass[BIOMD0000000181_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000181#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000182](https://www.ebi.ac.uk/biomodels/BIOMD0000000182)
Neves2008 - Role of cell shapeNeves2008 - Role of cell shape and size in controlling intracellular signalling
|
pass[BIOMD0000000182_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000182#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000183](https://www.ebi.ac.uk/biomodels/BIOMD0000000183)
Stefan2008 - calmodulin allostery|
pass[BIOMD0000000183_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000183#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000184](https://www.ebi.ac.uk/biomodels/BIOMD0000000184)
Lavrentovich2008_Ca_Oscillations|
pass[BIOMD0000000184_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000184#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000185](https://www.ebi.ac.uk/biomodels/BIOMD0000000185)
Locke2008_Circadian_Clock|
pass[BIOMD0000000185_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000185#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000186](https://www.ebi.ac.uk/biomodels/BIOMD0000000186)
Ibrahim2008 - Mitotic Spindle Ibrahim2008 - Mitotic Spindle Assembly Checkpoint - Dissociation variant
|
pass[BIOMD0000000186_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000186#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000187](https://www.ebi.ac.uk/biomodels/BIOMD0000000187)
Ibrahim2008 - Mitotic Spindle Ibrahim2008 - Mitotic Spindle Assembly Checkpoint - Convey variant
|
pass[BIOMD0000000187_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000187#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000188](https://www.ebi.ac.uk/biomodels/BIOMD0000000188)
Proctor2008 - p53/Mdm2 circuitProctor2008 - p53/Mdm2 circuit - p53 stabilisation by ATM
|
pass[BIOMD0000000188_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000188#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000189](https://www.ebi.ac.uk/biomodels/BIOMD0000000189)
Proctor2008 - p53/Mdm2 circuitProctor2008 - p53/Mdm2 circuit - p53 stablisation by p14ARF
|
pass[BIOMD0000000189_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000189#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000190](https://www.ebi.ac.uk/biomodels/BIOMD0000000190)
Rodriguez-Caso2006_Polyamine_MRodriguez-Caso2006_Polyamine_Metabolism
|
pass[BIOMD0000000190_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000190#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000191](https://www.ebi.ac.uk/biomodels/BIOMD0000000191)
Montañez2008_Arginine_catabolism|
pass[BIOMD0000000191_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000191#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000192](https://www.ebi.ac.uk/biomodels/BIOMD0000000192)
Görlich2003_RanGTP_gradient|
pass[BIOMD0000000192_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000192#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000193](https://www.ebi.ac.uk/biomodels/BIOMD0000000193)
Ibrahim2008_MCC_assembly_model_KDM|
pass[BIOMD0000000193_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000193#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000194](https://www.ebi.ac.uk/biomodels/BIOMD0000000194)
Ibrahim2008_Cdc20_Sequestring_Ibrahim2008_Cdc20_Sequestring_Template_Model
|
pass[BIOMD0000000194_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000194#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000195](https://www.ebi.ac.uk/biomodels/BIOMD0000000195)
Tyson2001_Cell_Cycle_Regulation|
pass[BIOMD0000000195_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000195#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000196](https://www.ebi.ac.uk/biomodels/BIOMD0000000196)
Srividhya2006_CellCycle|
pass[BIOMD0000000196_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000196#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000197](https://www.ebi.ac.uk/biomodels/BIOMD0000000197)
Bartholome2007_MDCKII|
pass[BIOMD0000000197_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000197#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000198](https://www.ebi.ac.uk/biomodels/BIOMD0000000198)
Stone1996 - activation of soluStone1996 - activation of soluble guanylate cyclase by nitric oxide
|
pass[BIOMD0000000198_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000198#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000199](https://www.ebi.ac.uk/biomodels/BIOMD0000000199)
Santolini2001_nNOS_Mechanism_RSantolini2001_nNOS_Mechanism_Regulation
|
pass[BIOMD0000000199_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000199#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000200](https://www.ebi.ac.uk/biomodels/BIOMD0000000200)
Bray1995_chemotaxis_receptorliBray1995_chemotaxis_receptorlinkedcomplex
|
FAIL[BIOMD0000000200_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000200#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000201](https://www.ebi.ac.uk/biomodels/BIOMD0000000201)
Goldbeter2008_Somite_SegmentatGoldbeter2008_Somite_Segmentation_Clock_Notch_Wnt_FGF
|
pass[BIOMD0000000201_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000201#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000202](https://www.ebi.ac.uk/biomodels/BIOMD0000000202)
ChenXF2008_CICR|
pass[BIOMD0000000202_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000202#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000203](https://www.ebi.ac.uk/biomodels/BIOMD0000000203)
Chickarmane2006 - Stem cell swChickarmane2006 - Stem cell switch reversible
|
pass[BIOMD0000000203_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000203#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000204](https://www.ebi.ac.uk/biomodels/BIOMD0000000204)
Chickarmane2006 - Stem cell swChickarmane2006 - Stem cell switch irreversible
|
pass[BIOMD0000000204_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000204#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000205](https://www.ebi.ac.uk/biomodels/BIOMD0000000205)
Ung2008_EGFR_Endocytosis|
pass[BIOMD0000000205_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000205#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000206](https://www.ebi.ac.uk/biomodels/BIOMD0000000206)
Wolf2000_Glycolytic_Oscillations|
pass[BIOMD0000000206_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000206#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000207](https://www.ebi.ac.uk/biomodels/BIOMD0000000207)
Romond1999_CellCycle|
FAIL[BIOMD0000000207_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000207#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000208](https://www.ebi.ac.uk/biomodels/BIOMD0000000208)
Deineko2003_CellCycle|
pass[BIOMD0000000208_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000208#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000209](https://www.ebi.ac.uk/biomodels/BIOMD0000000209)
Chickarmane2008 - Stem cell liChickarmane2008 - Stem cell lineage determination
|
pass[BIOMD0000000209_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000209#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000210](https://www.ebi.ac.uk/biomodels/BIOMD0000000210)
Chickarmane2008 - Stem cell liChickarmane2008 - Stem cell lineage - NANOG GATA-6 switch
|
pass[BIOMD0000000210_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000210#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000211](https://www.ebi.ac.uk/biomodels/BIOMD0000000211)
Albert2005_Glycolysis|
pass[BIOMD0000000211_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000211#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000212](https://www.ebi.ac.uk/biomodels/BIOMD0000000212)
Curien2009_Aspartate_Metabolism|
pass[BIOMD0000000212_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000212#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000213](https://www.ebi.ac.uk/biomodels/BIOMD0000000213)
Nijhout2004_Folate_Cycle|
pass[BIOMD0000000213_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000213#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000214](https://www.ebi.ac.uk/biomodels/BIOMD0000000214)
Akman2008_Circadian_Clock_Model2|
pass[BIOMD0000000214_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000214#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000215](https://www.ebi.ac.uk/biomodels/BIOMD0000000215)
Schulz2009_Th1_differentiation|
pass[BIOMD0000000215_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000215#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000216](https://www.ebi.ac.uk/biomodels/BIOMD0000000216)
Hong2009_CircadianClock|
pass[BIOMD0000000216_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000216#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000217](https://www.ebi.ac.uk/biomodels/BIOMD0000000217)
Bruggeman2005_AmmoniumAssimilation|
pass[BIOMD0000000217_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000217#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000218](https://www.ebi.ac.uk/biomodels/BIOMD0000000218)
Singh2006_TCA_mtu_model2|
pass[BIOMD0000000218_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000218#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000219](https://www.ebi.ac.uk/biomodels/BIOMD0000000219)
Singh2006_TCA_mtu_model1|
pass[BIOMD0000000219_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000219#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000220](https://www.ebi.ac.uk/biomodels/BIOMD0000000220)
Albeck2008_extrinsic_apoptosis|
pass[BIOMD0000000220_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000220#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000221](https://www.ebi.ac.uk/biomodels/BIOMD0000000221)
Singh2006_TCA_Ecoli_acetate|
pass[BIOMD0000000221_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000221#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000222](https://www.ebi.ac.uk/biomodels/BIOMD0000000222)
Singh2006_TCA_Ecoli_glucose|
pass[BIOMD0000000222_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000222#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000223](https://www.ebi.ac.uk/biomodels/BIOMD0000000223)
Borisov2009_EGF_Insulin_Crosstalk|
pass[BIOMD0000000223_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000223#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000224](https://www.ebi.ac.uk/biomodels/BIOMD0000000224)
Meyer1991_CalciumSpike_ICC|
pass[BIOMD0000000224_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000224#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000225](https://www.ebi.ac.uk/biomodels/BIOMD0000000225)
Westermark2003_Pancreatic_GlycWestermark2003_Pancreatic_GlycOsc_basic
|
pass[BIOMD0000000225_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000225#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000226](https://www.ebi.ac.uk/biomodels/BIOMD0000000226)
Radulescu2008_NFkB_hierarchy_MRadulescu2008_NFkB_hierarchy_M_14_25_28_Lipniacky
|
pass[BIOMD0000000226_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000226#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000227](https://www.ebi.ac.uk/biomodels/BIOMD0000000227)
Radulescu2008_NFkB_hierarchy_MRadulescu2008_NFkB_hierarchy_M_39_65_90
|
pass[BIOMD0000000227_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000227#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000228](https://www.ebi.ac.uk/biomodels/BIOMD0000000228)
Swat2004_Mammalian_G1_S_Transition|
pass[BIOMD0000000228_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000228#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000229](https://www.ebi.ac.uk/biomodels/BIOMD0000000229)
Ma2002_cAMP_oscillations|
pass[BIOMD0000000229_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000229#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000230](https://www.ebi.ac.uk/biomodels/BIOMD0000000230)
Ihekwaba2004_NFkB_Sensitivity|
pass[BIOMD0000000230_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000230#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000231](https://www.ebi.ac.uk/biomodels/BIOMD0000000231)
Valero2006_Adenine_TernaryCycle|
pass[BIOMD0000000231_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000231#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000232](https://www.ebi.ac.uk/biomodels/BIOMD0000000232)
Nazaret2009_TCA_RC_ATP|
pass[BIOMD0000000232_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000232#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000233](https://www.ebi.ac.uk/biomodels/BIOMD0000000233)
Wilhelm2009_BistableReaction|
pass[BIOMD0000000233_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000233#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000234](https://www.ebi.ac.uk/biomodels/BIOMD0000000234)
Tham2008 - PDmodel, Tumour shrTham2008 - PDmodel, Tumour shrinkage by gemcitabine and carboplatin
|
pass[BIOMD0000000234_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000234#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000235](https://www.ebi.ac.uk/biomodels/BIOMD0000000235)
Kuhn2009_EndoMesodermNetwork|
pass[BIOMD0000000235_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000235#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000236](https://www.ebi.ac.uk/biomodels/BIOMD0000000236)
Westermark2003_Pancreatic_GlycWestermark2003_Pancreatic_GlycOsc_extended
|
pass[BIOMD0000000236_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000236#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000237](https://www.ebi.ac.uk/biomodels/BIOMD0000000237)
Schaber2006_Pheromone_StarvatiSchaber2006_Pheromone_Starvation_Crosstalk
|
pass[BIOMD0000000237_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000237#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000238](https://www.ebi.ac.uk/biomodels/BIOMD0000000238)
Overgaard2007_PDmodel_IL21|
pass[BIOMD0000000238_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000238#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000239](https://www.ebi.ac.uk/biomodels/BIOMD0000000239)
Jiang2007 - GSIS system, PancrJiang2007 - GSIS system, Pancreatic Beta Cells
|
pass[BIOMD0000000239_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000239#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000240](https://www.ebi.ac.uk/biomodels/BIOMD0000000240)
Veening2008_DegU_Regulation|
pass[BIOMD0000000240_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000240#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000241](https://www.ebi.ac.uk/biomodels/BIOMD0000000241)
Shi1993_Caffeine_pressor_tolerance|
pass[BIOMD0000000241_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000241#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000242](https://www.ebi.ac.uk/biomodels/BIOMD0000000242)
Bai2003_G1phaseRegulation|
pass[BIOMD0000000242_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000242#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000243](https://www.ebi.ac.uk/biomodels/BIOMD0000000243)
Neumann2010_CD95Stimulation_NFNeumann2010_CD95Stimulation_NFkB_Apoptosis
|
pass[BIOMD0000000243_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000243#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000244](https://www.ebi.ac.uk/biomodels/BIOMD0000000244)
Kotte2010_Ecoli_Metabolic_Adaption|
pass[BIOMD0000000244_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000244#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000245](https://www.ebi.ac.uk/biomodels/BIOMD0000000245)
Lei2001_Yeast_Aerobic_Metabolism|
pass[BIOMD0000000245_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000245#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000246](https://www.ebi.ac.uk/biomodels/BIOMD0000000246)
Vasalou2010_Pacemaker_Neuron_SCN|
pass[BIOMD0000000246_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000246#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000247](https://www.ebi.ac.uk/biomodels/BIOMD0000000247)
Ralser2007_Carbohydrate_ReroutRalser2007_Carbohydrate_Rerouting_ROS
|
pass[BIOMD0000000247_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000247#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000248](https://www.ebi.ac.uk/biomodels/BIOMD0000000248)
Lai2007_O2_Transport_Metabolism|
pass[BIOMD0000000248_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000248#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000249](https://www.ebi.ac.uk/biomodels/BIOMD0000000249)
Restif2006 - Whooping cough|
pass[BIOMD0000000249_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000249#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000250](https://www.ebi.ac.uk/biomodels/BIOMD0000000250)
Nakakuki2010_CellFateDecision_Nakakuki2010_CellFateDecision_Mechanistic
|
pass[BIOMD0000000250_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000250#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000251](https://www.ebi.ac.uk/biomodels/BIOMD0000000251)
Nakakuki2010_CellFateDecision_Core|
pass[BIOMD0000000251_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000251#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000252](https://www.ebi.ac.uk/biomodels/BIOMD0000000252)
Hunziker2010_p53_StressSpecifiHunziker2010_p53_StressSpecificResponse
|
pass[BIOMD0000000252_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000252#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000253](https://www.ebi.ac.uk/biomodels/BIOMD0000000253)
Teusink1998_Glycolysis_TurboDesign|
pass[BIOMD0000000253_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000253#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000254](https://www.ebi.ac.uk/biomodels/BIOMD0000000254)
Bier2000_GlycolyticOscillation|
pass[BIOMD0000000254_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000254#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000255](https://www.ebi.ac.uk/biomodels/BIOMD0000000255)
Chen2009 - ErbB Signaling|
pass[BIOMD0000000255_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000255#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000256](https://www.ebi.ac.uk/biomodels/BIOMD0000000256)
Rehm2006_Caspase|
pass[BIOMD0000000256_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000256#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000257](https://www.ebi.ac.uk/biomodels/BIOMD0000000257)
Piedrafita2010_MR_System|
pass[BIOMD0000000257_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000257#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000258](https://www.ebi.ac.uk/biomodels/BIOMD0000000258)
Ortega2006 - bistability from Ortega2006 - bistability from double phosphorylation in signal transduction
|
pass[BIOMD0000000258_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000258#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000259](https://www.ebi.ac.uk/biomodels/BIOMD0000000259)
Tiago2010_FeMetabolism_FeDeficient|
pass[BIOMD0000000259_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000259#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000260](https://www.ebi.ac.uk/biomodels/BIOMD0000000260)
Tiago2010_FeMetabolism_FeAdequate|
pass[BIOMD0000000260_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000260#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000261](https://www.ebi.ac.uk/biomodels/BIOMD0000000261)
Tiago2010_FeMetabolism_FeLoaded|
pass[BIOMD0000000261_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000261#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000262](https://www.ebi.ac.uk/biomodels/BIOMD0000000262)
Fujita2010_Akt_Signalling_EGF|
pass[BIOMD0000000262_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000262#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000263](https://www.ebi.ac.uk/biomodels/BIOMD0000000263)
Fujita2010_Akt_Signalling_NGF|
pass[BIOMD0000000263_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000263#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000264](https://www.ebi.ac.uk/biomodels/BIOMD0000000264)
Fujita2010_Akt_Signalling_EGFRinhib|
pass[BIOMD0000000264_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000264#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000265](https://www.ebi.ac.uk/biomodels/BIOMD0000000265)
Conradie2010_RPControl_CellCycle|
pass[BIOMD0000000265_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000265#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000266](https://www.ebi.ac.uk/biomodels/BIOMD0000000266)
Voit2003 - Trehalose Cycle|
pass[BIOMD0000000266_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000266#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000267](https://www.ebi.ac.uk/biomodels/BIOMD0000000267)
Lebeda2008 - BoNT paralysis (3Lebeda2008 - BoNT paralysis (3 step model)
|
pass[BIOMD0000000267_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000267#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000268](https://www.ebi.ac.uk/biomodels/BIOMD0000000268)
Reed2008_Glutathione_Metabolism|
pass[BIOMD0000000268_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000268#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000269](https://www.ebi.ac.uk/biomodels/BIOMD0000000269)
Liu2010_Hormonal_Crosstalk_AraLiu2010_Hormonal_Crosstalk_Arabidopsis
|
pass[BIOMD0000000269_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000269#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000270](https://www.ebi.ac.uk/biomodels/BIOMD0000000270)
Schilling2009 - ERK distributive|
pass[BIOMD0000000270_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000270#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000271](https://www.ebi.ac.uk/biomodels/BIOMD0000000271)
Becker2010_EpoR_CoreModel|
pass[BIOMD0000000271_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000271#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000272](https://www.ebi.ac.uk/biomodels/BIOMD0000000272)
Becker2010_EpoR_AuxiliaryModel|
pass[BIOMD0000000272_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000272#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000273](https://www.ebi.ac.uk/biomodels/BIOMD0000000273)
Pokhilko2010_CircClock|
pass[BIOMD0000000273_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000273#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000274](https://www.ebi.ac.uk/biomodels/BIOMD0000000274)
Rattanakul2003_BoneFormationModel|
pass[BIOMD0000000274_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000274#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000275](https://www.ebi.ac.uk/biomodels/BIOMD0000000275)
Goldbeter2007_Somitogenesis_Switch|
pass[BIOMD0000000275_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000275#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000276](https://www.ebi.ac.uk/biomodels/BIOMD0000000276)
Shrestha2010_HypoCalcemia_PTHrShrestha2010_HypoCalcemia_PTHresponse
|
pass[BIOMD0000000276_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000276#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000277](https://www.ebi.ac.uk/biomodels/BIOMD0000000277)
Shrestha2010_HyperCalcemia_PTHShrestha2010_HyperCalcemia_PTHresponse
|
pass[BIOMD0000000277_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000277#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000278](https://www.ebi.ac.uk/biomodels/BIOMD0000000278)
Lemaire2004 - Role of RANK/RANLemaire2004 - Role of RANK/RANKL/OPG pathway in bone remodelling process
|
pass[BIOMD0000000278_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000278#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000279](https://www.ebi.ac.uk/biomodels/BIOMD0000000279)
Komarova2005_PTHaction_OsteoclKomarova2005_PTHaction_OsteoclastOsteoblastCoupling
|
pass[BIOMD0000000279_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000279#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000280](https://www.ebi.ac.uk/biomodels/BIOMD0000000280)
Morris1981_MuscleFibre_VoltageMorris1981_MuscleFibre_Voltage_reduced
|
pass[BIOMD0000000280_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000280#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000281](https://www.ebi.ac.uk/biomodels/BIOMD0000000281)
Chance1960_Glycolysis_Respiration|
pass[BIOMD0000000281_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000281#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000282](https://www.ebi.ac.uk/biomodels/BIOMD0000000282)
Chance1952_Catalase_Mechanism|
pass[BIOMD0000000282_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000282#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000283](https://www.ebi.ac.uk/biomodels/BIOMD0000000283)
Chance1943_Peroxidase_ES_Kinetics|
pass[BIOMD0000000283_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000283#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000284](https://www.ebi.ac.uk/biomodels/BIOMD0000000284)
Hofmeyer1986_SeqFb_Proc_AA_Synthesis|
pass[BIOMD0000000284_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000284#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000285](https://www.ebi.ac.uk/biomodels/BIOMD0000000285)
Tang2010_PolyGlutamate|
pass[BIOMD0000000285_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000285#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000286](https://www.ebi.ac.uk/biomodels/BIOMD0000000286)
Proctor2010 - a link between GProctor2010 - a link between GSK3 and p53 in Alzheimer's Disease
|
pass[BIOMD0000000286_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000286#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000287](https://www.ebi.ac.uk/biomodels/BIOMD0000000287)
Passos2010_DNAdamage_CellularSPassos2010_DNAdamage_CellularSenescence
|
pass[BIOMD0000000287_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000287#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000288](https://www.ebi.ac.uk/biomodels/BIOMD0000000288)
Wang2009 - PI3K Ras Crosstalk|
pass[BIOMD0000000288_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000288#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000289](https://www.ebi.ac.uk/biomodels/BIOMD0000000289)
Alexander2010_Tcell_Regulation_Sys1|
pass[BIOMD0000000289_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000289#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000290](https://www.ebi.ac.uk/biomodels/BIOMD0000000290)
Alexander2010_Tcell_Regulation_Sys2|
pass[BIOMD0000000290_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000290#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000291](https://www.ebi.ac.uk/biomodels/BIOMD0000000291)
Nikolaev2005_AlbuminBilirubinANikolaev2005_AlbuminBilirubinAdsorption
|
pass[BIOMD0000000291_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000291#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000292](https://www.ebi.ac.uk/biomodels/BIOMD0000000292)
Rovers1995_Photsynthetic_OscilRovers1995_Photsynthetic_Oscillations
|
pass[BIOMD0000000292_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000292#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000293](https://www.ebi.ac.uk/biomodels/BIOMD0000000293)
Proctor2010 - UCHL1 Protein AgProctor2010 - UCHL1 Protein Aggregation
|
pass[BIOMD0000000293_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000293#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000294](https://www.ebi.ac.uk/biomodels/BIOMD0000000294)
Restif2007 - Vaccination invasion|
pass[BIOMD0000000294_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000294#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000295](https://www.ebi.ac.uk/biomodels/BIOMD0000000295)
Akman2008_Circadian_Clock_Model1|
pass[BIOMD0000000295_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000295#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000296](https://www.ebi.ac.uk/biomodels/BIOMD0000000296)
Balagaddé2008_E_coli_Predator_Prey|
pass[BIOMD0000000296_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000296#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000297](https://www.ebi.ac.uk/biomodels/BIOMD0000000297)
Ciliberto2003_Morphogenesis_ChCiliberto2003_Morphogenesis_Checkpoint
|
pass[BIOMD0000000297_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000297#Files)
|pass|
pass[f3.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000297#Files)
|FAIL|
NoSBMLelement```No sbml element exists for concentration selection '[Swe1_total]'```
| -|
[BIOMD0000000298](https://www.ebi.ac.uk/biomodels/BIOMD0000000298)
Leloup1999_CircadianRhythms_DrLeloup1999_CircadianRhythms_Drosophila
|
pass[BIOMD0000000298_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000298#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000299](https://www.ebi.ac.uk/biomodels/BIOMD0000000299)
Leloup1999_CircadianRhythms_NeLeloup1999_CircadianRhythms_Neurospora
|
pass[BIOMD0000000299_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000299#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000300](https://www.ebi.ac.uk/biomodels/BIOMD0000000300)
Schmierer2010_FIH_Ankyrins|
pass[BIOMD0000000300_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000300#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000301](https://www.ebi.ac.uk/biomodels/BIOMD0000000301)
Friedland2009_Ara_RTC3_counter|
pass[BIOMD0000000301_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000301#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000302](https://www.ebi.ac.uk/biomodels/BIOMD0000000302)
Wang1996_Synaptic_Inhibition_TWang1996_Synaptic_Inhibition_Two_Neuron
|
pass[BIOMD0000000302_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000302#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000303](https://www.ebi.ac.uk/biomodels/BIOMD0000000303)
Liu2011_Complement_System|
pass[BIOMD0000000303_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000303#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000304](https://www.ebi.ac.uk/biomodels/BIOMD0000000304)
Plant1981_BurstingNerveCells|
pass[BIOMD0000000304_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000304#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000305](https://www.ebi.ac.uk/biomodels/BIOMD0000000305)
Kolomeisky2003_MyosinV_Processivity|
pass[BIOMD0000000305_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000305#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000306](https://www.ebi.ac.uk/biomodels/BIOMD0000000306)
Tyson2003_Activator_Inhibitor|
pass[BIOMD0000000306_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000306#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000307](https://www.ebi.ac.uk/biomodels/BIOMD0000000307)
Tyson2003_Substrate_Depletion_Osc|
pass[BIOMD0000000307_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000307#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000308](https://www.ebi.ac.uk/biomodels/BIOMD0000000308)
Tyson2003_NegFB_Oscillator|
pass[BIOMD0000000308_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000308#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000309](https://www.ebi.ac.uk/biomodels/BIOMD0000000309)
Tyson2003_NegFB_Homeostasis|
pass[BIOMD0000000309_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000309#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000310](https://www.ebi.ac.uk/biomodels/BIOMD0000000310)
Tyson2003_Mutual_Inhibition|
pass[BIOMD0000000310_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000310#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000311](https://www.ebi.ac.uk/biomodels/BIOMD0000000311)
Tyson2003_Mutual_Activation|
pass[BIOMD0000000311_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000311#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000312](https://www.ebi.ac.uk/biomodels/BIOMD0000000312)
Tyson2003_Perfect_Adaption|
pass[BIOMD0000000312_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000312#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000313](https://www.ebi.ac.uk/biomodels/BIOMD0000000313)
Raia2010 - IL13 Signalling MedB1|
pass[BIOMD0000000313_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000313#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000314](https://www.ebi.ac.uk/biomodels/BIOMD0000000314)
Raia2011 - IL13 L1236|
pass[BIOMD0000000314_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000314#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000315](https://www.ebi.ac.uk/biomodels/BIOMD0000000315)
Montagne2011_Oligator_optimised|
pass[BIOMD0000000315_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000315#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000316](https://www.ebi.ac.uk/biomodels/BIOMD0000000316)
Shen-Orr2002_FeedForward_AND_gate|
pass[BIOMD0000000316_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000316#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000317](https://www.ebi.ac.uk/biomodels/BIOMD0000000317)
Shen-Orr2002_Single_Input_Module|
pass[BIOMD0000000317_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000317#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000318](https://www.ebi.ac.uk/biomodels/BIOMD0000000318)
Yao2008_Rb_E2F_Switch|
pass[BIOMD0000000318_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000318#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000319](https://www.ebi.ac.uk/biomodels/BIOMD0000000319)
Decroly1982_Enzymatic_Oscillator|
pass[BIOMD0000000319_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000319#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000320](https://www.ebi.ac.uk/biomodels/BIOMD0000000320)
Grange2001 - PK interaction ofGrange2001 - PK interaction of L-dopa and benserazide
|
pass[BIOMD0000000320_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000320#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000321](https://www.ebi.ac.uk/biomodels/BIOMD0000000321)
Grange2001 - L Dopa PK model|
pass[BIOMD0000000321_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000321#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000322](https://www.ebi.ac.uk/biomodels/BIOMD0000000322)
Kim2011_Oscillator_SimpleI|
pass[BIOMD0000000322_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000322#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000323](https://www.ebi.ac.uk/biomodels/BIOMD0000000323)
Kim2011_Oscillator_SimpleIII|
pass[BIOMD0000000323_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000323#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000324](https://www.ebi.ac.uk/biomodels/BIOMD0000000324)
Morris1981_MuscleFibre_Voltage_full|
pass[BIOMD0000000324_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000324#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000325](https://www.ebi.ac.uk/biomodels/BIOMD0000000325)
Palini2011_Minimal_2_Feedback_Model|
pass[BIOMD0000000325_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000325#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000326](https://www.ebi.ac.uk/biomodels/BIOMD0000000326)
DellOrco2009_phototransduction|
pass[BIOMD0000000326_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000326#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000327](https://www.ebi.ac.uk/biomodels/BIOMD0000000327)
Whitcomb2004_Bicarbonate_Pancreas|
pass[BIOMD0000000327_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000327#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000328](https://www.ebi.ac.uk/biomodels/BIOMD0000000328)
Bucher2011_Atorvastatin_Metabolism|
pass[BIOMD0000000328_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000328#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000329](https://www.ebi.ac.uk/biomodels/BIOMD0000000329)
Kummer2000 - Oscillations in CKummer2000 - Oscillations in Calcium Signalling
|
pass[BIOMD0000000329_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000329#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000330](https://www.ebi.ac.uk/biomodels/BIOMD0000000330)
Larsen2004_CalciumSpiking|
pass[BIOMD0000000330_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000330#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000331](https://www.ebi.ac.uk/biomodels/BIOMD0000000331)
Larsen2004_CalciumSpiking_EnzyLarsen2004_CalciumSpiking_EnzymeBinding
|
pass[BIOMD0000000331_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000331#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000332](https://www.ebi.ac.uk/biomodels/BIOMD0000000332)
Bungay2006_Plasma|
pass[BIOMD0000000332_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000332#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000333](https://www.ebi.ac.uk/biomodels/BIOMD0000000333)
Bungay2006_FollicularFluid|
pass[BIOMD0000000333_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000333#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000334](https://www.ebi.ac.uk/biomodels/BIOMD0000000334)
Bungay2003_Thrombin_Generation|
pass[BIOMD0000000334_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000334#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000335](https://www.ebi.ac.uk/biomodels/BIOMD0000000335)
Hockin2002_BloodCoagulation|
pass[BIOMD0000000335_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000335#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000336](https://www.ebi.ac.uk/biomodels/BIOMD0000000336)
Jones1994_BloodCoagulation|
pass[BIOMD0000000336_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000336#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000337](https://www.ebi.ac.uk/biomodels/BIOMD0000000337)
Pfeiffer2001_ATP-ProducingPathPfeiffer2001_ATP-ProducingPathways_CooperationCompetition
|
pass[BIOMD0000000337_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000337#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000338](https://www.ebi.ac.uk/biomodels/BIOMD0000000338)
Wajima2009_BloodCoagulation_aPTTtest|
pass[BIOMD0000000338_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000338#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000339](https://www.ebi.ac.uk/biomodels/BIOMD0000000339)
Wajima2009_BloodCoagulation_PTtest|
pass[BIOMD0000000339_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000339#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000340](https://www.ebi.ac.uk/biomodels/BIOMD0000000340)
Wajima2009_BloodCoagulation_waWajima2009_BloodCoagulation_warfarin_heparin
|
pass[BIOMD0000000340_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000340#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000341](https://www.ebi.ac.uk/biomodels/BIOMD0000000341)
Topp2000_BetaCellMass_Diabetes|
pass[BIOMD0000000341_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000341#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000342](https://www.ebi.ac.uk/biomodels/BIOMD0000000342)
Zi2011_TGF-beta_Pathway|
pass[BIOMD0000000342_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000342#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000343](https://www.ebi.ac.uk/biomodels/BIOMD0000000343)
Brannmark2010_InsulinSignallinBrannmark2010_InsulinSignalling_Mifamodel
|
pass[BIOMD0000000343_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000343#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000344](https://www.ebi.ac.uk/biomodels/BIOMD0000000344)
Proctor2011_ProteinHomeostasisProctor2011_ProteinHomeostasis_NormalCondition
|
pass[BIOMD0000000344_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000344#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000345](https://www.ebi.ac.uk/biomodels/BIOMD0000000345)
Koschorreck2008_InsulinClearance|
pass[BIOMD0000000345_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000345#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000346](https://www.ebi.ac.uk/biomodels/BIOMD0000000346)
FitzHugh1961_NerveMembrane|
pass[BIOMD0000000346_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000346#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000347](https://www.ebi.ac.uk/biomodels/BIOMD0000000347)
Bachmann2011_JAK2-STAT5_FeedbaBachmann2011_JAK2-STAT5_FeedbackControl
|
pass[BIOMD0000000347_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000347#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000348](https://www.ebi.ac.uk/biomodels/BIOMD0000000348)
Fridlyand2010_GlucoseSensitivity_A|
pass[BIOMD0000000348_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000348#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000349](https://www.ebi.ac.uk/biomodels/BIOMD0000000349)
Fridlyand2010_GlucoseSensitivity_B|
pass[BIOMD0000000349_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000349#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000350](https://www.ebi.ac.uk/biomodels/BIOMD0000000350)
Troein2011_ClockCircuit_OstreoTroein2011_ClockCircuit_OstreococcusTauri
|
pass[BIOMD0000000350_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000350#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000351](https://www.ebi.ac.uk/biomodels/BIOMD0000000351)
Vernoux2011_AuxinSignaling_AuxVernoux2011_AuxinSignaling_AuxinSingleStepInput
|
pass[BIOMD0000000351_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000351#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000352](https://www.ebi.ac.uk/biomodels/BIOMD0000000352)
Vernoux2011_AuxinSignaling_AuxVernoux2011_AuxinSignaling_AuxinFluctuating
|
pass[BIOMD0000000352_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000352#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000353](https://www.ebi.ac.uk/biomodels/BIOMD0000000353)
Nag2011_ChloroplasticStarchDegNag2011_ChloroplasticStarchDegradation
|
pass[BIOMD0000000353_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000353#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000354](https://www.ebi.ac.uk/biomodels/BIOMD0000000354)
Abell2011_CalciumSignaling_WitAbell2011_CalciumSignaling_WithoutAdaptation
|
pass[BIOMD0000000354_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000354#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000355](https://www.ebi.ac.uk/biomodels/BIOMD0000000355)
Abell2011_CalciumSignaling_WitAbell2011_CalciumSignaling_WithAdaptation
|
pass[BIOMD0000000355_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000355#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000356](https://www.ebi.ac.uk/biomodels/BIOMD0000000356)
Nyman2011_M3Hierarachical_InsuNyman2011_M3Hierarachical_InsulinGlucosedynamics
|
pass[BIOMD0000000356_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000356#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000357](https://www.ebi.ac.uk/biomodels/BIOMD0000000357)
Lee2010_ThrombinActivation_OneLee2010_ThrombinActivation_OneForm_reduced
|
pass[BIOMD0000000357_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000357#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000358](https://www.ebi.ac.uk/biomodels/BIOMD0000000358)
Stortelder1997 - Thrombin GeneStortelder1997 - Thrombin Generation Amidolytic Activity
|
pass[BIOMD0000000358_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000358#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000359](https://www.ebi.ac.uk/biomodels/BIOMD0000000359)
Panteleev2002_TFPImechanism_schmema3|
pass[BIOMD0000000359_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000359#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000360](https://www.ebi.ac.uk/biomodels/BIOMD0000000360)
Panteleev2002_TFPImechanism_schmema2|
pass[BIOMD0000000360_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000360#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000361](https://www.ebi.ac.uk/biomodels/BIOMD0000000361)
Panteleev2002_TFPImechanism_schmema1|
pass[BIOMD0000000361_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000361#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000362](https://www.ebi.ac.uk/biomodels/BIOMD0000000362)
Butenas2004_BloodCoagulation|
pass[BIOMD0000000362_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000362#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000363](https://www.ebi.ac.uk/biomodels/BIOMD0000000363)
Lee2010_ThrombinActivation_OneLee2010_ThrombinActivation_OneForm_minimal
|
pass[BIOMD0000000363_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000363#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000364](https://www.ebi.ac.uk/biomodels/BIOMD0000000364)
Lee2010_ThrombinActivation_OneForm|
pass[BIOMD0000000364_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000364#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000365](https://www.ebi.ac.uk/biomodels/BIOMD0000000365)
Hockin1999_BloodCoagulation_VaHockin1999_BloodCoagulation_VaInactivation
|
pass[BIOMD0000000365_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000365#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000366](https://www.ebi.ac.uk/biomodels/BIOMD0000000366)
Orfao2008_ThrombinGeneration_AOrfao2008_ThrombinGeneration_AmidolyticActivity
|
pass[BIOMD0000000366_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000366#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000367](https://www.ebi.ac.uk/biomodels/BIOMD0000000367)
Mueller2008_ThrombinGenerationMueller2008_ThrombinGeneration_minimal
|
pass[BIOMD0000000367_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000367#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000368](https://www.ebi.ac.uk/biomodels/BIOMD0000000368)
Beltrami1995_ThrombinGeneration_C|
pass[BIOMD0000000368_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000368#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000369](https://www.ebi.ac.uk/biomodels/BIOMD0000000369)
Beltrami1995_ThrombinGeneration_D|
pass[BIOMD0000000369_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000369#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000370](https://www.ebi.ac.uk/biomodels/BIOMD0000000370)
Vinod2011_MitoticExit|
pass[BIOMD0000000370_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000370#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000371](https://www.ebi.ac.uk/biomodels/BIOMD0000000371)
DeVries2000_PancreaticBetaCellDeVries2000_PancreaticBetaCells_InsulinSecretion
|
pass[BIOMD0000000371_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000371#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000372](https://www.ebi.ac.uk/biomodels/BIOMD0000000372)
Tolic2000_InsulinGlucoseFeedback|
pass[BIOMD0000000372_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000372#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000373](https://www.ebi.ac.uk/biomodels/BIOMD0000000373)
Bertram2004_PancreaticBetaCellBertram2004_PancreaticBetaCell_modelB
|
pass[BIOMD0000000373_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000373#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000374](https://www.ebi.ac.uk/biomodels/BIOMD0000000374)
Bertram1995_PancreaticBetaCell_CRAC|
pass[BIOMD0000000374_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000374#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000375](https://www.ebi.ac.uk/biomodels/BIOMD0000000375)
Mears1997_CRAC_PancreaticBetaCells|
pass[BIOMD0000000375_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000375#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000376](https://www.ebi.ac.uk/biomodels/BIOMD0000000376)
Bertram2007_IsletCell_Oscillations|
pass[BIOMD0000000376_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000376#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000377](https://www.ebi.ac.uk/biomodels/BIOMD0000000377)
Bertram2000_PancreaticBetaCellBertram2000_PancreaticBetaCells_Oscillations
|
pass[BIOMD0000000377_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000377#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000378](https://www.ebi.ac.uk/biomodels/BIOMD0000000378)
Chay1997_CalciumConcentration|
pass[BIOMD0000000378_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000378#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000379](https://www.ebi.ac.uk/biomodels/BIOMD0000000379)
DallaMan2007_MealModel_GlucoseDallaMan2007_MealModel_GlucoseInsulinSystem
|
pass[BIOMD0000000379_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000379#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000380](https://www.ebi.ac.uk/biomodels/BIOMD0000000380)
Smallbone2011_TrehaloseBiosynthesis|
pass[BIOMD0000000380_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000380#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000381](https://www.ebi.ac.uk/biomodels/BIOMD0000000381)
Maree2006_DuCa_Type1DiabetesModel|
pass[BIOMD0000000381_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000381#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000382](https://www.ebi.ac.uk/biomodels/BIOMD0000000382)
Sturis1991_InsulinGlucoseModelSturis1991_InsulinGlucoseModel_UltradianOscillation
|
pass[BIOMD0000000382_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000382#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000383](https://www.ebi.ac.uk/biomodels/BIOMD0000000383)
Arnold2011_Farquhar1980_RuBisCArnold2011_Farquhar1980_RuBisCO-CalvinCycle
|
pass[BIOMD0000000383_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000383#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000384](https://www.ebi.ac.uk/biomodels/BIOMD0000000384)
Arnold2011_Medlyn2002_RuBisCO-Arnold2011_Medlyn2002_RuBisCO-CalvinCycle
|
pass[BIOMD0000000384_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000384#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000385](https://www.ebi.ac.uk/biomodels/BIOMD0000000385)
Arnold2011_Schultz2003_RuBisCOArnold2011_Schultz2003_RuBisCO-CalvinCycle
|
pass[BIOMD0000000385_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000385#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000386](https://www.ebi.ac.uk/biomodels/BIOMD0000000386)
Arnold2011_Sharkey2007_RuBisCOArnold2011_Sharkey2007_RuBisCO-CalvinCycle
|
pass[BIOMD0000000386_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000386#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000387](https://www.ebi.ac.uk/biomodels/BIOMD0000000387)
Arnold2011_Damour2007_RuBisCO-Arnold2011_Damour2007_RuBisCO-CalvinCycle
|
pass[BIOMD0000000387_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000387#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000388](https://www.ebi.ac.uk/biomodels/BIOMD0000000388)
Arnold2011_Zhu2009_CalvinCycle|
pass[BIOMD0000000388_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000388#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000389](https://www.ebi.ac.uk/biomodels/BIOMD0000000389)
Arnold2011_Hahn1986_CalvinCyclArnold2011_Hahn1986_CalvinCycle_Starch_Sucrose
|
pass[BIOMD0000000389_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000389#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000390](https://www.ebi.ac.uk/biomodels/BIOMD0000000390)
Arnold2011_Giersch1990_CalvinCycle|
pass[BIOMD0000000390_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000390#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000391](https://www.ebi.ac.uk/biomodels/BIOMD0000000391)
Arnold2011_Poolman2000_CalvinCArnold2011_Poolman2000_CalvinCycle_Starch
|
pass[BIOMD0000000391_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000391#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000392](https://www.ebi.ac.uk/biomodels/BIOMD0000000392)
Arnold2011_Laisk2006_CalvinCycArnold2011_Laisk2006_CalvinCycle_Starch_Sucrose
|
pass[BIOMD0000000392_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000392#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000393](https://www.ebi.ac.uk/biomodels/BIOMD0000000393)
Arnold2011_Zhu2007_CalvinCycleArnold2011_Zhu2007_CalvinCycle_Starch_Sucrose_Photorespiration
|
pass[BIOMD0000000393_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000393#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000394](https://www.ebi.ac.uk/biomodels/BIOMD0000000394)
Sivakumar2011 - EGF Receptor SSivakumar2011 - EGF Receptor Signaling Pathway
|
pass[BIOMD0000000394_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000394#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000395](https://www.ebi.ac.uk/biomodels/BIOMD0000000395)
Sivakumar2011 - Hedgehog SignaSivakumar2011 - Hedgehog Signaling Pathway
|
pass[BIOMD0000000395_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000395#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000396](https://www.ebi.ac.uk/biomodels/BIOMD0000000396)
Sivakumar2011 - Notch SignalinSivakumar2011 - Notch Signaling Pathway
|
pass[BIOMD0000000396_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000396#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000397](https://www.ebi.ac.uk/biomodels/BIOMD0000000397)
Sivakumar2011_WntSignalingPathway|
pass[BIOMD0000000397_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000397#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000398](https://www.ebi.ac.uk/biomodels/BIOMD0000000398)
Sivakumar2011_NeuralStemCellDiSivakumar2011_NeuralStemCellDifferentiation_Crosstalk
|
pass[BIOMD0000000398_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000398#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000399](https://www.ebi.ac.uk/biomodels/BIOMD0000000399)
Jenkinson2011_EGF_MAPK|
pass[BIOMD0000000399_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000399#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000400](https://www.ebi.ac.uk/biomodels/BIOMD0000000400)
Cooling2007_IP3transients_CardCooling2007_IP3transients_CardiacMyocyte
|
pass[BIOMD0000000400_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000400#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000401](https://www.ebi.ac.uk/biomodels/BIOMD0000000401)
Ayati2010_BoneRemodelingDynamiAyati2010_BoneRemodelingDynamics_NormalCondition
|
pass[BIOMD0000000401_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000401#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000402](https://www.ebi.ac.uk/biomodels/BIOMD0000000402)
Ayati2010_BoneRemodelingDynamiAyati2010_BoneRemodelingDynamics_WithTumour
|
pass[BIOMD0000000402_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000402#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000403](https://www.ebi.ac.uk/biomodels/BIOMD0000000403)
Ayati2010_BoneRemodelingDynamiAyati2010_BoneRemodelingDynamics_WithTumour+DrugTreatment
|
pass[BIOMD0000000403_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000403#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000404](https://www.ebi.ac.uk/biomodels/BIOMD0000000404)
Bray1993_chemotaxis|
pass[BIOMD0000000404_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000404#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000405](https://www.ebi.ac.uk/biomodels/BIOMD0000000405)
Cookson2011_EnzymaticQueueingCCookson2011_EnzymaticQueueingCoupling
|
pass[BIOMD0000000405_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000405#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000406](https://www.ebi.ac.uk/biomodels/BIOMD0000000406)
Moriya2011_CellCycle_FissionYeast|
pass[BIOMD0000000406_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000406#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000407](https://www.ebi.ac.uk/biomodels/BIOMD0000000407)
Schliemann2011_TNF_ProAntiApoptosis|
pass[BIOMD0000000407_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000407#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000408](https://www.ebi.ac.uk/biomodels/BIOMD0000000408)
Hettling2011_CreatineKinase|
pass[BIOMD0000000408_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000408#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000409](https://www.ebi.ac.uk/biomodels/BIOMD0000000409)
Queralt2006_MitoticExit_Cdc55DQueralt2006_MitoticExit_Cdc55DownregulationBySeparase
|
pass[BIOMD0000000409_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000409#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000410](https://www.ebi.ac.uk/biomodels/BIOMD0000000410)
Wegner2012_TGFbetaSignalling_FWegner2012_TGFbetaSignalling_FeedbackLoops
|
pass[BIOMD0000000410_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000410#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000411](https://www.ebi.ac.uk/biomodels/BIOMD0000000411)
Heiland2012_CircadianClock_C.rHeiland2012_CircadianClock_C.reinhardtii
|
pass[BIOMD0000000411_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000411#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000412](https://www.ebi.ac.uk/biomodels/BIOMD0000000412)
Pokhilko2012_CircClock_RepressPokhilko2012_CircClock_RepressilatorFeedbackloop
|
pass[BIOMD0000000412_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000412#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000413](https://www.ebi.ac.uk/biomodels/BIOMD0000000413)
Band2012_DII-Venus_FullModel|
pass[BIOMD0000000413_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000413#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000414](https://www.ebi.ac.uk/biomodels/BIOMD0000000414)
Band2012_DII-Venus_ReducedModel|
pass[BIOMD0000000414_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000414#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000415](https://www.ebi.ac.uk/biomodels/BIOMD0000000415)
Mellor2012_LipooxygenasePathway|
pass[BIOMD0000000415_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000415#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000416](https://www.ebi.ac.uk/biomodels/BIOMD0000000416)
Muraro2011_Cytokinin-Auxin_CroMuraro2011_Cytokinin-Auxin_CrossRegulation
|
pass[BIOMD0000000416_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000416#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000417](https://www.ebi.ac.uk/biomodels/BIOMD0000000417)
Ratushny2012_NF|
pass[BIOMD0000000417_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000417#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000418](https://www.ebi.ac.uk/biomodels/BIOMD0000000418)
Ratushny2012_SPF|
pass[BIOMD0000000418_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000418#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000419](https://www.ebi.ac.uk/biomodels/BIOMD0000000419)
Ratushny2012_SPF_I|
pass[BIOMD0000000419_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000419#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000420](https://www.ebi.ac.uk/biomodels/BIOMD0000000420)
Ratushny2012_ASSURE_I|
pass[BIOMD0000000420_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000420#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000421](https://www.ebi.ac.uk/biomodels/BIOMD0000000421)
Ratushny2012_ASSURE_II|
pass[BIOMD0000000421_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000421#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000422](https://www.ebi.ac.uk/biomodels/BIOMD0000000422)
Middleton2012_GibberellinSignalling|
pass[BIOMD0000000422_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000422#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000423](https://www.ebi.ac.uk/biomodels/BIOMD0000000423)
Nyman2012_InsulinSignalling|
pass[BIOMD0000000423_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000423#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000424](https://www.ebi.ac.uk/biomodels/BIOMD0000000424)
Faratian2009 - Role of PTEN inFaratian2009 - Role of PTEN in Trastuzumab resistance
|
pass[BIOMD0000000424_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000424#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000425](https://www.ebi.ac.uk/biomodels/BIOMD0000000425)
Tan2012 - Antibiotic TreatmentTan2012 - Antibiotic Treatment, Inoculum Effect
|
FAIL[BIOMD0000000425_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000425#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000426](https://www.ebi.ac.uk/biomodels/BIOMD0000000426)
Mosca2012 - Central Carbon MetMosca2012 - Central Carbon Metabolism Regulated by AKT
|
pass[BIOMD0000000426_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000426#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000427](https://www.ebi.ac.uk/biomodels/BIOMD0000000427)
Bianconi2012 - EGFR and IGF1R Bianconi2012 - EGFR and IGF1R pathway in lung cancer
|
pass[BIOMD0000000427_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000427#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000428](https://www.ebi.ac.uk/biomodels/BIOMD0000000428)
Achcar2012 - Glycolysis in bloAchcar2012 - Glycolysis in bloodstream form T. brucei
|
pass[BIOMD0000000428_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000428#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000429](https://www.ebi.ac.uk/biomodels/BIOMD0000000429)
Schaber2012 - Hog pathway in yeast|
pass[BIOMD0000000429_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000429#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000430](https://www.ebi.ac.uk/biomodels/BIOMD0000000430)
Sarma2012 - Interaction topoloSarma2012 - Interaction topologies of MAPK cascade (M4_K2_USEQ)
|
pass[BIOMD0000000430_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000430#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000431](https://www.ebi.ac.uk/biomodels/BIOMD0000000431)
Sarma2012 - Interaction topoloSarma2012 - Interaction topologies of MAPK cascade (M4_K2_PSEQ)
|
pass[BIOMD0000000431_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000431#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000432](https://www.ebi.ac.uk/biomodels/BIOMD0000000432)
Sarma2012 - Interaction topoloSarma2012 - Interaction topologies of MAPK cascade (M4_K2_QSS_USEQ)
|
pass[BIOMD0000000432_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000432#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000433](https://www.ebi.ac.uk/biomodels/BIOMD0000000433)
Sarma2012 - Interaction topoloSarma2012 - Interaction topologies of MAPK cascade (M4_K2_QSS_PSEQ)
|
pass[BIOMD0000000433_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000433#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000434](https://www.ebi.ac.uk/biomodels/BIOMD0000000434)
McAuley2012 - Whole-body CholeMcAuley2012 - Whole-body Cholesterol Metabolism
|
pass[BIOMD0000000434_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000434#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000435](https://www.ebi.ac.uk/biomodels/BIOMD0000000435)
deBack2012 - Lineage SpecificadeBack2012 - Lineage Specification in Pancreas Development
|
pass[BIOMD0000000435_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000435#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000436](https://www.ebi.ac.uk/biomodels/BIOMD0000000436)
Gupta2009 - Eicosanoid Metabolism|
pass[BIOMD0000000436_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000436#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000437](https://www.ebi.ac.uk/biomodels/BIOMD0000000437)
Tseng2012 - Circadian clock ofTseng2012 - Circadian clock of N.crassa
|
FAIL[BIOMD0000000437_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000437#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000438](https://www.ebi.ac.uk/biomodels/BIOMD0000000438)
Saeidi2012 - Quorum sensing deSaeidi2012 - Quorum sensing device that produces GFP
|
pass[BIOMD0000000438_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000438#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000439](https://www.ebi.ac.uk/biomodels/BIOMD0000000439)
Smith2009 - RGS mediated GTP hSmith2009 - RGS mediated GTP hydrolysis
|
FAIL[BIOMD0000000439_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000439#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000440](https://www.ebi.ac.uk/biomodels/BIOMD0000000440)
Sarma2012 - Oscillations in MASarma2012 - Oscillations in MAPK cascade (S1)
|
pass[BIOMD0000000440_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000440#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000441](https://www.ebi.ac.uk/biomodels/BIOMD0000000441)
Sarma2012 - Oscillations in MASarma2012 - Oscillations in MAPK cascade (S2)
|
pass[BIOMD0000000441_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000441#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000442](https://www.ebi.ac.uk/biomodels/BIOMD0000000442)
Sarma2012 - Oscillations in MASarma2012 - Oscillations in MAPK cascade (S2), inclusion of external signalling module
|
pass[BIOMD0000000442_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000442#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000443](https://www.ebi.ac.uk/biomodels/BIOMD0000000443)
Sarma2012 - Oscillations in MASarma2012 - Oscillations in MAPK cascade (S1n)
|
pass[BIOMD0000000443_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000443#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000444](https://www.ebi.ac.uk/biomodels/BIOMD0000000444)
Sarma2012 - Oscillations in MASarma2012 - Oscillations in MAPK cascade (S2n)
|
pass[BIOMD0000000444_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000444#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000445](https://www.ebi.ac.uk/biomodels/BIOMD0000000445)
Pokhilko2013 - TOC1 signallingPokhilko2013 - TOC1 signalling in Arabidopsis circadian clock
|
pass[BIOMD0000000445_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000445#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000446](https://www.ebi.ac.uk/biomodels/BIOMD0000000446)
Erguler2013 - Unfolded proteinErguler2013 - Unfolded protein stress response
|
pass[BIOMD0000000446_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000446#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000447](https://www.ebi.ac.uk/biomodels/BIOMD0000000447)
Venkatraman2012 - Interplay beVenkatraman2012 - Interplay between PLS and TSP1 in TGF-β1 activation
|
pass[BIOMD0000000447_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000447#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000448](https://www.ebi.ac.uk/biomodels/BIOMD0000000448)
Brännmark2013 - Insulin signalBrännmark2013 - Insulin signalling in human adipocytes (normal condition)
|
pass[BIOMD0000000448_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000448#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000449](https://www.ebi.ac.uk/biomodels/BIOMD0000000449)
Brännmark2013 - Insulin signalBrännmark2013 - Insulin signalling in human adipocytes (diabetic condition)
|
pass[BIOMD0000000449_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000449#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000450](https://www.ebi.ac.uk/biomodels/BIOMD0000000450)
Reyes-Palomares2012 - a combiReyes-Palomares2012 - a combined model hepatic polyamine and sulfur aminoacid metabolism - version2
|
pass[BIOMD0000000450_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000450#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000451](https://www.ebi.ac.uk/biomodels/BIOMD0000000451)
Carbo2013 - Cytokine driven CDCarbo2013 - Cytokine driven CD4+ T Cell differentiation and phenotype plasticity
|
pass[BIOMD0000000451_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000451#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000452](https://www.ebi.ac.uk/biomodels/BIOMD0000000452)
Bidkhori2012 - normal EGFR sigBidkhori2012 - normal EGFR signalling
|
pass[BIOMD0000000452_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000452#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000453](https://www.ebi.ac.uk/biomodels/BIOMD0000000453)
Bidkhori2012 - EGFR signallingBidkhori2012 - EGFR signalling in NSCLC
|
pass[BIOMD0000000453_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000453#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000454](https://www.ebi.ac.uk/biomodels/BIOMD0000000454)
Smallbone2013 - Metabolic ContSmallbone2013 - Metabolic Control Analysis - Example 1
|
pass[BIOMD0000000454_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000454#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000455](https://www.ebi.ac.uk/biomodels/BIOMD0000000455)
Smallbone2013 - Metabolic ContSmallbone2013 - Metabolic Control Analysis - Example 2
|
pass[BIOMD0000000455_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000455#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000456](https://www.ebi.ac.uk/biomodels/BIOMD0000000456)
Smallbone2013 - Metabolic ContSmallbone2013 - Metabolic Control Analysis - Example 3
|
pass[BIOMD0000000456_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000456#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000457](https://www.ebi.ac.uk/biomodels/BIOMD0000000457)
Firczuk2013 - Eukaryotic mRNA Firczuk2013 - Eukaryotic mRNA translation machinery
|
pass[BIOMD0000000457_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000457#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000458](https://www.ebi.ac.uk/biomodels/BIOMD0000000458)
Smallbone2013 - Serine biosynthesis|
pass[BIOMD0000000458_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000458#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000459](https://www.ebi.ac.uk/biomodels/BIOMD0000000459)
Liebal2012 - B.subtilis post-tLiebal2012 - B.subtilis post-transcriptional instability model
|
pass[BIOMD0000000459_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000459#Files)
|pass|
FAIL[BIOMD0000000459-SEDML.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000459#Files)
|pass|
SEDMLfile```failed to validate SEDML file BIOMD0000000459-SEDML.xml```
| -|
[BIOMD0000000460](https://www.ebi.ac.uk/biomodels/BIOMD0000000460)
Liebal2012 - B.subtilis sigB pLiebal2012 - B.subtilis sigB proteolysis model
|
pass[BIOMD0000000460_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000460#Files)
|pass|
FAIL[BIOMD0000000460-SEDML.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000460#Files)
|pass|
SEDMLfile```failed to validate SEDML file BIOMD0000000460-SEDML.xml```
| -|
[BIOMD0000000461](https://www.ebi.ac.uk/biomodels/BIOMD0000000461)
Liebal2012 - B.subtilis transcLiebal2012 - B.subtilis transcription inhibition model
|
pass[BIOMD0000000461_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000461#Files)
|pass|
FAIL[BIOMD0000000461-SEDML.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000461#Files)
|pass|
SEDMLfile```failed to validate SEDML file BIOMD0000000461-SEDML.xml```
| -|
[BIOMD0000000462](https://www.ebi.ac.uk/biomodels/BIOMD0000000462)
Proctor2012 - Role of Amyloid-Proctor2012 - Role of Amyloid-beta dimers in aggregation formation
|
pass[BIOMD0000000462_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000462#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000463](https://www.ebi.ac.uk/biomodels/BIOMD0000000463)
Heldt2012 - Influenza Virus ReHeldt2012 - Influenza Virus Replication
|
pass[BIOMD0000000463_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000463#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000464](https://www.ebi.ac.uk/biomodels/BIOMD0000000464)
Koo2013 - Shear stress inducedKoo2013 - Shear stress induced calcium influx and eNOS activation - Model 1
|
pass[BIOMD0000000464_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000464#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000465](https://www.ebi.ac.uk/biomodels/BIOMD0000000465)
Koo2013 - Shear stress inducedKoo2013 - Shear stress induced AKT and eNOS phosphorylation - Model 2
|
pass[BIOMD0000000465_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000465#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000466](https://www.ebi.ac.uk/biomodels/BIOMD0000000466)
Koo2013 - Shear stress inducedKoo2013 - Shear stress induced eNOS expression - Model 3
|
pass[BIOMD0000000466_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000466#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000467](https://www.ebi.ac.uk/biomodels/BIOMD0000000467)
Koo2013 - Shear stress inducedKoo2013 - Shear stress induced NO production - Model 4
|
pass[BIOMD0000000467_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000467#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000468](https://www.ebi.ac.uk/biomodels/BIOMD0000000468)
Koo2013 - Integrated shear strKoo2013 - Integrated shear stress induced NO production model
|
pass[BIOMD0000000468_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000468#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000469](https://www.ebi.ac.uk/biomodels/BIOMD0000000469)
Smallbone2013 - E.coli metabolSmallbone2013 - E.coli metabolic model with linlog rate law
|
pass[BIOMD0000000469_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000469#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000470](https://www.ebi.ac.uk/biomodels/BIOMD0000000470)
Smallbone2013 - E.coli metabolSmallbone2013 - E.coli metabolic model with modular rate law
|
pass[BIOMD0000000470_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000470#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000471](https://www.ebi.ac.uk/biomodels/BIOMD0000000471)
Smallbone2013 - Yeast metaboliSmallbone2013 - Yeast metabolic model with linlog rate law
|
pass[BIOMD0000000471_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000471#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000472](https://www.ebi.ac.uk/biomodels/BIOMD0000000472)
Smallbone2013 - Yeast metaboliSmallbone2013 - Yeast metabolic model with modular rate law
|
pass[BIOMD0000000472_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000472#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000473](https://www.ebi.ac.uk/biomodels/BIOMD0000000473)
Smallbone2013 - Yeast metaboliSmallbone2013 - Yeast metabolic model with modular rate law, merged with Pritchard 2002
|
pass[BIOMD0000000473_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000473#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000474](https://www.ebi.ac.uk/biomodels/BIOMD0000000474)
Smith2013 - Regulation of InsuSmith2013 - Regulation of Insulin Signalling by Oxidative Stress
|
pass[BIOMD0000000474_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000474#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000475](https://www.ebi.ac.uk/biomodels/BIOMD0000000475)
Amara2013 - PCNA ubiquitylatioAmara2013 - PCNA ubiquitylation in the activation of PRR pathway
|
pass[BIOMD0000000475_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000475#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000476](https://www.ebi.ac.uk/biomodels/BIOMD0000000476)
Adams2012 - Locke2006 CircadiaAdams2012 - Locke2006 Circadian Rhythm model refined with Input Signal Light Function
|
pass[BIOMD0000000476_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000476#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000477](https://www.ebi.ac.uk/biomodels/BIOMD0000000477)
Mol2013 - Immune Signal TransdMol2013 - Immune Signal Transduction in Leishmaniasis
|
pass[BIOMD0000000477_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000477#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000478](https://www.ebi.ac.uk/biomodels/BIOMD0000000478)
Besozzi2012 - Oscillatory regiBesozzi2012 - Oscillatory regimes in the Ras/cAMP/PKA pathway in S.cerevisiae
|
pass[BIOMD0000000478_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000478#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000479](https://www.ebi.ac.uk/biomodels/BIOMD0000000479)
Croft2013 - GPCR-RGS interactiCroft2013 - GPCR-RGS interaction that compartmentalizes RGS activity
|
FAIL[BIOMD0000000479_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000479#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000480](https://www.ebi.ac.uk/biomodels/BIOMD0000000480)
Carbo2013 - Mucosal Immune ResCarbo2013 - Mucosal Immune Response during H.pylori Infection
|
pass[BIOMD0000000480_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000480#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000481](https://www.ebi.ac.uk/biomodels/BIOMD0000000481)
Stötzel2012 - Bovine estrous cStötzel2012 - Bovine estrous cycle, synchronization with prostaglandin F2α
|
pass[BIOMD0000000481_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000481#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000482](https://www.ebi.ac.uk/biomodels/BIOMD0000000482)
Noguchi2013 - Insulin dependenNoguchi2013 - Insulin dependent glucose metabolism
|
pass[BIOMD0000000482_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000482#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000483](https://www.ebi.ac.uk/biomodels/BIOMD0000000483)
Cao2008 - Network of a toggle switch|
pass[BIOMD0000000483_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000483#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000484](https://www.ebi.ac.uk/biomodels/BIOMD0000000484)
Cao2013 - Application of ABSISCao2013 - Application of ABSIS method in birth-death process
|
pass[BIOMD0000000484_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000484#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000485](https://www.ebi.ac.uk/biomodels/BIOMD0000000485)
Cao2013 - Application of ABSISCao2013 - Application of ABSIS method in the bistable Schlögl model
|
pass[BIOMD0000000485_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000485#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000486](https://www.ebi.ac.uk/biomodels/BIOMD0000000486)
Cao2013 - Application of ABSISCao2013 - Application of ABSIS method in the reversible isomerization model
|
pass[BIOMD0000000486_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000486#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000487](https://www.ebi.ac.uk/biomodels/BIOMD0000000487)
Cao2013 - Application of ABSISCao2013 - Application of ABSIS in the the enzymatic futile cycle
|
pass[BIOMD0000000487_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000487#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000488](https://www.ebi.ac.uk/biomodels/BIOMD0000000488)
Proctor2013 - Effect of Aβ immProctor2013 - Effect of Aβ immunisation in Alzheimer's disease (deterministic version)
|
pass[BIOMD0000000488_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000488#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000489](https://www.ebi.ac.uk/biomodels/BIOMD0000000489)
Sharp2013 - LipopolysaccharideSharp2013 - Lipopolysaccharide induced NFkB activation
|
pass[BIOMD0000000489_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000489#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000490](https://www.ebi.ac.uk/biomodels/BIOMD0000000490)
Demin2013 - PKPD behaviour - 5Demin2013 - PKPD behaviour - 5-Lipoxygenase inhibitors
|
pass[BIOMD0000000490_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000490#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000491](https://www.ebi.ac.uk/biomodels/BIOMD0000000491)
Pathak2013 - MAPK activation iPathak2013 - MAPK activation in response to various abiotic stresses
|
pass[BIOMD0000000491_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000491#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000492](https://www.ebi.ac.uk/biomodels/BIOMD0000000492)
Pathak2013 - MAPK activation iPathak2013 - MAPK activation in response to various biotic stresses
|
pass[BIOMD0000000492_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000492#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000493](https://www.ebi.ac.uk/biomodels/BIOMD0000000493)
Schittler2010 - Cell fate of pSchittler2010 - Cell fate of progenitor cells, osteoblasts or chondrocytes
|
pass[BIOMD0000000493_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000493#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000494](https://www.ebi.ac.uk/biomodels/BIOMD0000000494)
Roblitz2013 - Menstrual Cycle Roblitz2013 - Menstrual Cycle following GnRH analogue administration
|
pass[BIOMD0000000494_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000494#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000495](https://www.ebi.ac.uk/biomodels/BIOMD0000000495)
Sen2013 - Phospholipid SynthesSen2013 - Phospholipid Synthesis in P.knowlesi
|
pass[BIOMD0000000495_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000495#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000496](https://www.ebi.ac.uk/biomodels/BIOMD0000000496)
Stanford2013 - Kinetic model oStanford2013 - Kinetic model of yeast metabolic network (standard)
|
pass[BIOMD0000000496_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000496#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000497](https://www.ebi.ac.uk/biomodels/BIOMD0000000497)
Stanford2013 - Kinetic model oStanford2013 - Kinetic model of yeast metabolic network (regulation)
|
pass[BIOMD0000000497_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000497#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000498](https://www.ebi.ac.uk/biomodels/BIOMD0000000498)
Mitchell2013 - Liver Iron Metabolism|
pass[BIOMD0000000498_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000498#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000499](https://www.ebi.ac.uk/biomodels/BIOMD0000000499)
Vizan2013 - TGF pathway long tVizan2013 - TGF pathway long term signaling
|
pass[BIOMD0000000499_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000499#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000500](https://www.ebi.ac.uk/biomodels/BIOMD0000000500)
Begitt2014 - STAT1 cooperativeBegitt2014 - STAT1 cooperative DNA binding - single GAS polymer model
|
pass[BIOMD0000000500_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000500#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000501](https://www.ebi.ac.uk/biomodels/BIOMD0000000501)
Begitt2014 - STAT1 cooperativeBegitt2014 - STAT1 cooperative DNA binding - double GAS polymer model
|
pass[BIOMD0000000501_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000501#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000502](https://www.ebi.ac.uk/biomodels/BIOMD0000000502)
Messiha2013 - Pentose phosphatMessiha2013 - Pentose phosphate pathway model
|
pass[BIOMD0000000502_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000502#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000503](https://www.ebi.ac.uk/biomodels/BIOMD0000000503)
Messiha2013 - combined glycolyMessiha2013 - combined glycolysis and pentose phosphate pathway model
|
pass[BIOMD0000000503_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000503#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000504](https://www.ebi.ac.uk/biomodels/BIOMD0000000504)
Proctor2013 - Cartilage breakdProctor2013 - Cartilage breakdown, interventions to reduce collagen release
|
pass[BIOMD0000000504_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000504#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000505](https://www.ebi.ac.uk/biomodels/BIOMD0000000505)
vanEunen2013 - Network dynamicvanEunen2013 - Network dynamics of fatty acid β-oxidation (steady-state model)
|
pass[BIOMD0000000505_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000505#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000506](https://www.ebi.ac.uk/biomodels/BIOMD0000000506)
vanEunen2013 - Network dynamicvanEunen2013 - Network dynamics of fatty acid β-oxidation (time-course model)
|
pass[BIOMD0000000506_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000506#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000507](https://www.ebi.ac.uk/biomodels/BIOMD0000000507)
Gardner2000 - genetic toggle sGardner2000 - genetic toggle switch in E.coli
|
pass[BIOMD0000000507_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000507#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000508](https://www.ebi.ac.uk/biomodels/BIOMD0000000508)
Barrack2014 - Calcium/cell cycBarrack2014 - Calcium/cell cycle coupling - Cyclin D dependent ATP release
|
FAIL[BIOMD0000000508_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000508#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000509](https://www.ebi.ac.uk/biomodels/BIOMD0000000509)
Barrack2014 - Calcium/cell cycBarrack2014 - Calcium/cell cycle coupling - Rs dependent ATP release
|
FAIL[BIOMD0000000509_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000509#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000510](https://www.ebi.ac.uk/biomodels/BIOMD0000000510)
Kerkhoven2013 - Glycolysis andKerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL C (with glucosomal ribokinase)
|
pass[BIOMD0000000510_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000510#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000511](https://www.ebi.ac.uk/biomodels/BIOMD0000000511)
Kerkhoven2013 - Glycolysis andKerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL D (with ATP:ADP antiporter)
|
pass[BIOMD0000000511_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000511#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000512](https://www.ebi.ac.uk/biomodels/BIOMD0000000512)
Benson2014 - FAAH inhibitors fBenson2014 - FAAH inhibitors for the treatment of osteoarthritic pain
|
pass[BIOMD0000000512_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000512#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000513](https://www.ebi.ac.uk/biomodels/BIOMD0000000513)
Kerkhoven2013 - Glycolysis in Kerkhoven2013 - Glycolysis in T.brucei - MODEL A
|
pass[BIOMD0000000513_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000513#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000514](https://www.ebi.ac.uk/biomodels/BIOMD0000000514)
Kerkhoven2013 - Glycolysis andKerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL B
|
pass[BIOMD0000000514_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000514#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000515](https://www.ebi.ac.uk/biomodels/BIOMD0000000515)
Kerkhoven2013 - Glycolysis andKerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL C in fructose medium (with glucosomal ribokinase)
|
pass[BIOMD0000000515_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000515#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000516](https://www.ebi.ac.uk/biomodels/BIOMD0000000516)
Kerkhoven2013 - Glycolysis andKerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL D in fructose medium (with ATP:ADP antiporter)
|
pass[BIOMD0000000516_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000516#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000517](https://www.ebi.ac.uk/biomodels/BIOMD0000000517)
Smallbone2013 - Colon Crypt cySmallbone2013 - Colon Crypt cycle - Version 3
|
pass[BIOMD0000000517_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000517#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000518](https://www.ebi.ac.uk/biomodels/BIOMD0000000518)
Smallbone2013 - Colon Crypt cySmallbone2013 - Colon Crypt cycle - Version 2
|
pass[BIOMD0000000518_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000518#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000519](https://www.ebi.ac.uk/biomodels/BIOMD0000000519)
Smallbone2013 - Colon Crypt cySmallbone2013 - Colon Crypt cycle - Version 1
|
pass[BIOMD0000000519_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000519#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000520](https://www.ebi.ac.uk/biomodels/BIOMD0000000520)
Smallbone2013 - Colon Crypt cySmallbone2013 - Colon Crypt cycle - Version 0
|
pass[BIOMD0000000520_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000520#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000521](https://www.ebi.ac.uk/biomodels/BIOMD0000000521)
Ribba2012 - Low-grade gliomas,Ribba2012 - Low-grade gliomas, tumour growth inhibition model
|
pass[BIOMD0000000521_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000521#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000522](https://www.ebi.ac.uk/biomodels/BIOMD0000000522)
Muraro2014 - Vascular patterniMuraro2014 - Vascular patterning in Arabidopsis roots
|
pass[BIOMD0000000522_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000522#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000523](https://www.ebi.ac.uk/biomodels/BIOMD0000000523)
Kallenberger2014 - CD95L inducKallenberger2014 - CD95L induced apoptosis initiated by caspase-8, CD95 HeLa cells (cis/trans variant)
|
pass[BIOMD0000000523_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000523#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000524](https://www.ebi.ac.uk/biomodels/BIOMD0000000524)
Kallenberger2014 - CD95L inducKallenberger2014 - CD95L induced apoptosis initiated by caspase-8, wild-type HeLa cells (cis/trans variant)
|
pass[BIOMD0000000524_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000524#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000525](https://www.ebi.ac.uk/biomodels/BIOMD0000000525)
Kallenberger2014 - CD95L inducKallenberger2014 - CD95L induced apoptosis initiated by caspase-8, CD95 HeLa cells (cis/trans-cis/trans variant)
|
pass[BIOMD0000000525_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000525#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000526](https://www.ebi.ac.uk/biomodels/BIOMD0000000526)
Kallenberger2014 - CD95L inducKallenberger2014 - CD95L induced apoptosis initiated by caspase-8, wild-type HeLa cells (cis/trans-cis/trans variant)
|
pass[BIOMD0000000526_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000526#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000527](https://www.ebi.ac.uk/biomodels/BIOMD0000000527)
Kaiser2014 - Salmonella persisKaiser2014 - Salmonella persistence after ciprofloxacin treatment
|
pass[BIOMD0000000527_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000527#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000528](https://www.ebi.ac.uk/biomodels/BIOMD0000000528)
Fribourg2014 - Dynamics of virFribourg2014 - Dynamics of viral antagonism and innate immune response (H1N1 influenza A virus - Cal/09)
|
pass[BIOMD0000000528_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000528#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000529](https://www.ebi.ac.uk/biomodels/BIOMD0000000529)
Fribourg2014 - Dynamics of virFribourg2014 - Dynamics of viral antagonism and innate immune response (H1N1 influenza A virus - NC/99)
|
pass[BIOMD0000000529_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000529#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000530](https://www.ebi.ac.uk/biomodels/BIOMD0000000530)
Schmitz2014 - RNA triplex formation|
pass[BIOMD0000000530_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000530#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000531](https://www.ebi.ac.uk/biomodels/BIOMD0000000531)
Crespo2012 - Kinetics of AmyloCrespo2012 - Kinetics of Amyloid Fibril Formation
|
pass[BIOMD0000000531_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000531#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000532](https://www.ebi.ac.uk/biomodels/BIOMD0000000532)
Vazquez2014 - Chemical inhibitVazquez2014 - Chemical inhibition from amyloid protein aggregation kinetics
|
pass[BIOMD0000000532_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000532#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000533](https://www.ebi.ac.uk/biomodels/BIOMD0000000533)
Steckmann2012 - Amyloid beta-pSteckmann2012 - Amyloid beta-protein fibrillogenesis (kinetics of secondary structure conversion)
|
pass[BIOMD0000000533_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000533#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000534](https://www.ebi.ac.uk/biomodels/BIOMD0000000534)
Dwivedi2014 - Healthy VolunteeDwivedi2014 - Healthy Volunteer IL6 Model
|
pass[BIOMD0000000534_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000534#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000535](https://www.ebi.ac.uk/biomodels/BIOMD0000000535)
Dwivedi2014 - Crohns IL6 DiseaDwivedi2014 - Crohns IL6 Disease model - Anti-IL6 Antibody
|
pass[BIOMD0000000535_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000535#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000536](https://www.ebi.ac.uk/biomodels/BIOMD0000000536)
Dwivedi2014 - Crohns IL6 DiseaDwivedi2014 - Crohns IL6 Disease model - sgp130 activity
|
pass[BIOMD0000000536_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000536#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000537](https://www.ebi.ac.uk/biomodels/BIOMD0000000537)
Dwivedi2014 - Crohns IL6 DiseaDwivedi2014 - Crohns IL6 Disease model - Anti-IL6R Antibody
|
pass[BIOMD0000000537_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000537#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000538](https://www.ebi.ac.uk/biomodels/BIOMD0000000538)
Clarke2000 - One-hit model of Clarke2000 - One-hit model of cell death in neuronal degenerations
|
pass[BIOMD0000000538_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000538#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000539](https://www.ebi.ac.uk/biomodels/BIOMD0000000539)
François2005 - Mixed Feedback François2005 - Mixed Feedback Loop (two-gene network)
|
pass[BIOMD0000000539_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000539#Files)
|pass|
FAIL[BIOMD0000000539.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000539#Files)
|pass|
SEDMLfile```failed to validate SEDML file BIOMD0000000539.sedml```
| -|
[BIOMD0000000540](https://www.ebi.ac.uk/biomodels/BIOMD0000000540)
Yugi2014 - Insulin induced sigYugi2014 - Insulin induced signalling (PFKL phosphorylation) - model 1
|
pass[BIOMD0000000540_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000540#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000541](https://www.ebi.ac.uk/biomodels/BIOMD0000000541)
Yugi2014 - Insulin induced sigYugi2014 - Insulin induced signalling (PFKL phosphorylation) - model 2
|
pass[BIOMD0000000541_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000541#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000542](https://www.ebi.ac.uk/biomodels/BIOMD0000000542)
Yuraszeck2010 - VulnerabilitieYuraszeck2010 - Vulnerabilities in the Tau Network in Tau Pathophysiology
|
pass[BIOMD0000000542_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000542#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000543](https://www.ebi.ac.uk/biomodels/BIOMD0000000543)
Qi2013 - IL-6 and IFN crosstalQi2013 - IL-6 and IFN crosstalk model (non-competitive)
|
pass[BIOMD0000000543_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000543#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000544](https://www.ebi.ac.uk/biomodels/BIOMD0000000544)
Qi2013 - IL-6 and IFN crosstalQi2013 - IL-6 and IFN crosstalk model
|
pass[BIOMD0000000544_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000544#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000545](https://www.ebi.ac.uk/biomodels/BIOMD0000000545)
Ouyang2014 - photomorphogenic Ouyang2014 - photomorphogenic UV-B signalling network
|
pass[BIOMD0000000545_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000545#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000546](https://www.ebi.ac.uk/biomodels/BIOMD0000000546)
Miao2010 - Innate and adaptiveMiao2010 - Innate and adaptive immune responses to primary Influenza A Virus infection_1_1
|
FAIL[BIOMD0000000546.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000546#Files)
|FAIL|
pass[BIOMD0000000546.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000546#Files)
|pass|pass| -|
[BIOMD0000000547](https://www.ebi.ac.uk/biomodels/BIOMD0000000547)
Talemi2014 - Arsenic toxicity Talemi2014 - Arsenic toxicity and detoxification mechanisms in yeast
|
pass[BIOMD0000000547_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000547#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000548](https://www.ebi.ac.uk/biomodels/BIOMD0000000548)
Sneppen2009 - Modeling proteasSneppen2009 - Modeling proteasome dynamics in Parkinson's disease
|
pass[BIOMD0000000548_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000548#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000549](https://www.ebi.ac.uk/biomodels/BIOMD0000000549)
Baker2013 - Cytokine Mediated Baker2013 - Cytokine Mediated Inflammation in Rheumatoid Arthritis - Age Dependent
|
pass[BIOMD0000000549_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000549#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000550](https://www.ebi.ac.uk/biomodels/BIOMD0000000550)
Baker2013 - Cytokine Mediated Baker2013 - Cytokine Mediated Inflammation in Rheumatoid Arthritis
|
pass[BIOMD0000000550_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000550#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000551](https://www.ebi.ac.uk/biomodels/BIOMD0000000551)
Das2010 - Effect of a gamma-seDas2010 - Effect of a gamma-secretase inhibitor on Amyloid-beta dynamics
|
pass[BIOMD0000000551_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000551#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000552](https://www.ebi.ac.uk/biomodels/BIOMD0000000552)
Ehrenstein2000 - Positive-FeedEhrenstein2000 - Positive-Feedback model for the loss of acetylcholine in Alzheimer's disease
|
pass[BIOMD0000000552_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000552#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000553](https://www.ebi.ac.uk/biomodels/BIOMD0000000553)
Ehrenstein1997 - The choline-lEhrenstein1997 - The choline-leakage hypothesis in Alzheimer's disease
|
pass[BIOMD0000000553_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000553#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000554](https://www.ebi.ac.uk/biomodels/BIOMD0000000554)
Cloutier2009 - Brain Energy MeCloutier2009 - Brain Energy Metabolism
|
pass[BIOMD0000000554_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000554#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000555](https://www.ebi.ac.uk/biomodels/BIOMD0000000555)
Auer2010 - Correlation betweenAuer2010 - Correlation between lag time and aggregation rate in protein aggregation
|
pass[BIOMD0000000555_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000555#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000556](https://www.ebi.ac.uk/biomodels/BIOMD0000000556)
Ortega2013 - Interplay betweenOrtega2013 - Interplay between secretases determines biphasic amyloid-beta level
|
pass[BIOMD0000000556_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000556#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000557](https://www.ebi.ac.uk/biomodels/BIOMD0000000557)
Reiterer2013 - pseudophosphataReiterer2013 - pseudophosphatase STYX role in ERK signalling
|
pass[BIOMD0000000557_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000557#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000558](https://www.ebi.ac.uk/biomodels/BIOMD0000000558)
Cloutier2012 - Feedback motif Cloutier2012 - Feedback motif for Parkinson's disease
|
pass[BIOMD0000000558_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000558#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000559](https://www.ebi.ac.uk/biomodels/BIOMD0000000559)
Ouzounoglou2014 - Modeling of Ouzounoglou2014 - Modeling of alpha-synuclein effects on neuronal homeostasis
|
pass[BIOMD0000000559_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000559#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000560](https://www.ebi.ac.uk/biomodels/BIOMD0000000560)
Hui2016 - Age-related changes Hui2016 - Age-related changes in articular cartilage
|
pass[BIOMD0000000560_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000560#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000561](https://www.ebi.ac.uk/biomodels/BIOMD0000000561)
Martins2013 - True and apparenMartins2013 - True and apparent inhibition of amyloid fribril formation
|
pass[BIOMD0000000561_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000561#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000562](https://www.ebi.ac.uk/biomodels/BIOMD0000000562)
Chaouiya2013 - EGF and TNFalphChaouiya2013 - EGF and TNFalpha mediated signalling pathway
|
pass[BIOMD0000000562_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000562#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000563](https://www.ebi.ac.uk/biomodels/BIOMD0000000563)
Pritchard2014 - plant-microbe Pritchard2014 - plant-microbe interaction
|
pass[BIOMD0000000563_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000563#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000564](https://www.ebi.ac.uk/biomodels/BIOMD0000000564)
Gould2013 - Temperature SensitGould2013 - Temperature Sensitive Circadian Clock
|
pass[BIOMD0000000564_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000564#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000565](https://www.ebi.ac.uk/biomodels/BIOMD0000000565)
Machado2014 - Curcumin productMachado2014 - Curcumin production pathway in Escherichia coli
|
pass[BIOMD0000000565_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000565#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000566](https://www.ebi.ac.uk/biomodels/BIOMD0000000566)
Morris2009 - α-Synuclein aggreMorris2009 - α-Synuclein aggregation variable temperature and pH
|
pass[BIOMD0000000566_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000566#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000567](https://www.ebi.ac.uk/biomodels/BIOMD0000000567)
Morris2008 - Fitting protein aMorris2008 - Fitting protein aggregation data via F-W 2-step mechanism
|
pass[BIOMD0000000567_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000567#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000568](https://www.ebi.ac.uk/biomodels/BIOMD0000000568)
Mueller2015 - Hepatocyte proliMueller2015 - Hepatocyte proliferation, T160 phosphorylation of CDK2
|
pass[BIOMD0000000568_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000568#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000569](https://www.ebi.ac.uk/biomodels/BIOMD0000000569)
Dutta-Roy2015 - Opening of theDutta-Roy2015 - Opening of the multiple AMPA receptor conductance states
|
pass[BIOMD0000000569_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000569#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000570](https://www.ebi.ac.uk/biomodels/BIOMD0000000570)
Aubert2002 - Coupling between Aubert2002 - Coupling between Brain electrical activity, Metabolism and Hemodynamics
|
pass[BIOMD0000000570_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000570#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000571](https://www.ebi.ac.uk/biomodels/BIOMD0000000571)
Nishio2008 - Design of the phoNishio2008 - Design of the phosphotransferase system for enhanced glucose uptake in E. coli.
|
pass[BIOMD0000000571_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000571#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000572](https://www.ebi.ac.uk/biomodels/BIOMD0000000572)
Costa2014 - Computational ModeCosta2014 - Computational Model of L. lactis Metabolism
|
pass[BIOMD0000000572_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000572#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000573](https://www.ebi.ac.uk/biomodels/BIOMD0000000573)
Aguilera 2014 - HIV latency. IAguilera 2014 - HIV latency. Interaction between HIV proteins and immune response
|
pass[BIOMD0000000573_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000573#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000574](https://www.ebi.ac.uk/biomodels/BIOMD0000000574)
Lai2014 - Hemiconcerted MWC moLai2014 - Hemiconcerted MWC model of intact calmodulin with two targets
|
pass[BIOMD0000000574_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000574#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000575](https://www.ebi.ac.uk/biomodels/BIOMD0000000575)
Sass2009 - Approach to an α-sySass2009 - Approach to an α-synuclein-based BST model of Parkinson's disease
|
pass[BIOMD0000000575_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000575#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000576](https://www.ebi.ac.uk/biomodels/BIOMD0000000576)
Kolodkin2013 - Nuclear receptoKolodkin2013 - Nuclear receptor-mediated cortisol signalling network
|
pass[BIOMD0000000576_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000576#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000577](https://www.ebi.ac.uk/biomodels/BIOMD0000000577)
Zhou2015 - Circadian clock witZhou2015 - Circadian clock with immune regulator NPR1
|
pass[BIOMD0000000577_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000577#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000578](https://www.ebi.ac.uk/biomodels/BIOMD0000000578)
Invergo2014 - PhototransductioInvergo2014 - Phototransduction cascade in mouse rod cells
|
pass[BIOMD0000000578_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000578#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000579](https://www.ebi.ac.uk/biomodels/BIOMD0000000579)
Sengupta2015 - Knowledge base Sengupta2015 - Knowledge base model of human energy pool network (HEPNet)
|
pass[BIOMD0000000579_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000579#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000580](https://www.ebi.ac.uk/biomodels/BIOMD0000000580)
Sonntag2012 - mTOR model - IRSSonntag2012 - mTOR model - IRS dependent regulation of AMPK by insulin
|
pass[BIOMD0000000580_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000580#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000581](https://www.ebi.ac.uk/biomodels/BIOMD0000000581)
DallePezze2012 - TSC-independeDallePezze2012 - TSC-independent mTORC2 regulation
|
pass[BIOMD0000000581_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000581#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000582](https://www.ebi.ac.uk/biomodels/BIOMD0000000582)
DallePezze2014 - Cellular senDallePezze2014 - Cellular senescene-induced mitochondrial dysfunction
|
pass[BIOMD0000000582_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000582#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000583](https://www.ebi.ac.uk/biomodels/BIOMD0000000583)
Leber2015 - Mucosal immunity aLeber2015 - Mucosal immunity and gut microbiome interaction during C. difficile infection
|
pass[BIOMD0000000583_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000583#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000584](https://www.ebi.ac.uk/biomodels/BIOMD0000000584)
Mandlik2015 - Tristable genetiMandlik2015 - Tristable genetic circuit of Leishmania
|
FAIL[BIOMD0000000584_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000584#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000585](https://www.ebi.ac.uk/biomodels/BIOMD0000000585)
Rateitschak2012 - Interferon-gRateitschak2012 - Interferon-gamma (IFNγ) induced STAT1 signalling (PC_IFNg100)
|
FAIL[BIOMD0000000585_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000585#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000586](https://www.ebi.ac.uk/biomodels/BIOMD0000000586)
Karapetyan2016 - Genetic oscilKarapetyan2016 - Genetic oscillatory network - Activator Titration Circuit (ATC)
|
pass[BIOMD0000000586_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000586#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000587](https://www.ebi.ac.uk/biomodels/BIOMD0000000587)
Karapetyan2016 - Genetic oscilKarapetyan2016 - Genetic oscillatory network - Repressor Titration Circuit (RTC)
|
pass[BIOMD0000000587_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000587#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000588](https://www.ebi.ac.uk/biomodels/BIOMD0000000588)
Benson2013 - Identification ofBenson2013 - Identification of key drug targets in nerve growth factor pathway
|
pass[BIOMD0000000588_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000588#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000589](https://www.ebi.ac.uk/biomodels/BIOMD0000000589)
Valero2016 - Ascorbate-GlutathValero2016 - Ascorbate-Glutathione cycle in chloroplasts under light/dark conditions
|
pass[BIOMD0000000589_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000589#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000590](https://www.ebi.ac.uk/biomodels/BIOMD0000000590)
Hermansen2015 - denovo biosyntHermansen2015 - denovo biosynthesis of pyrimidines in yeast
|
pass[BIOMD0000000590_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000590#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000591](https://www.ebi.ac.uk/biomodels/BIOMD0000000591)
Boehm2014 - isoform-specific dBoehm2014 - isoform-specific dimerization of pSTAT5A and pSTAT5B
|
pass[BIOMD0000000591_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000591#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000592](https://www.ebi.ac.uk/biomodels/BIOMD0000000592)
Martinez-Sanchez2015 - T CD4+ Martinez-Sanchez2015 - T CD4+ lymphocyte transcriptional regulatory network
|
pass[BIOMD0000000592_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000592#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000593](https://www.ebi.ac.uk/biomodels/BIOMD0000000593)
Martinez-Sanchez2015 - T CD4+ Martinez-Sanchez2015 - T CD4+ lymphocyte transcriptional-signaling regulatory network
|
pass[BIOMD0000000593_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000593#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000594](https://www.ebi.ac.uk/biomodels/BIOMD0000000594)
Capuani2015 - Binding of Cbl aCapuani2015 - Binding of Cbl and Gbr2 to EGFR (Multisite Phosphorylation Model - MPM)
|
pass[BIOMD0000000594_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000594#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000595](https://www.ebi.ac.uk/biomodels/BIOMD0000000595)
Capuani2015 - Binding of Cbl aCapuani2015 - Binding of Cbl and Grb2 to EGFR (Early Activation Model - EAM)
|
pass[BIOMD0000000595_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000595#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000596](https://www.ebi.ac.uk/biomodels/BIOMD0000000596)
Philipson2015 - Innate immune Philipson2015 - Innate immune response modulated by NLRX1
|
FAIL[Philipson2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000596#Files)
|FAIL|
pass[Philipson2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000596#Files)
|FAIL|pass| -|
[BIOMD0000000597](https://www.ebi.ac.uk/biomodels/BIOMD0000000597)
Flis2015 - Plant clock gene ciFlis2015 - Plant clock gene circuit (P2011.1.2 PLM_71 ver 1)
|
pass[BIOMD0000000597_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000597#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000598](https://www.ebi.ac.uk/biomodels/BIOMD0000000598)
Flis2015 - Plant clock gene ciFlis2015 - Plant clock gene circuit (P2011.2.1 PLM_71 ver 2)
|
pass[BIOMD0000000598_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000598#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000599](https://www.ebi.ac.uk/biomodels/BIOMD0000000599)
Coggins2014 - CXCL12 dependentCoggins2014 - CXCL12 dependent recruitment of beta arrestin
|
pass[BIOMD0000000599_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000599#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000600](https://www.ebi.ac.uk/biomodels/BIOMD0000000600)
Cellière2011 - Plasticity of TCellière2011 - Plasticity of TGF-β Signalling
|
pass[BIOMD0000000600_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000600#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000601](https://www.ebi.ac.uk/biomodels/BIOMD0000000601)
Rosas2015 - Caffeine-induced lRosas2015 - Caffeine-induced luminal SR calcium changes
|
pass[BIOMD0000000601_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000601#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000602](https://www.ebi.ac.uk/biomodels/BIOMD0000000602)
Stavrum2013 - Tryptophan MetabStavrum2013 - Tryptophan Metabolism in Liver
|
pass[BIOMD0000000602_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000602#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000603](https://www.ebi.ac.uk/biomodels/BIOMD0000000603)
PetelenzKuehn_osmoadaptation_WT|
pass[BIOMD0000000603_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000603#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000604](https://www.ebi.ac.uk/biomodels/BIOMD0000000604)
PetelenzKuehn_osmoadaptation_pPetelenzKuehn_osmoadaptation_pfk2627D
|
pass[BIOMD0000000604_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000604#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000605](https://www.ebi.ac.uk/biomodels/BIOMD0000000605)
PetelenzKuehn_osmoadaptation_HOG1att|
pass[BIOMD0000000605_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000605#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000606](https://www.ebi.ac.uk/biomodels/BIOMD0000000606)
PetelenzKuehn_osmoadaptation_hog1D|
pass[BIOMD0000000606_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000606#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000607](https://www.ebi.ac.uk/biomodels/BIOMD0000000607)
PetelenzKuehn_osmoadaptation_fps1D1|
pass[BIOMD0000000607_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000607#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000608](https://www.ebi.ac.uk/biomodels/BIOMD0000000608)
Palsson2013 - Fully-integratedPalsson2013 - Fully-integrated immune response model (FIRM)
|
pass[BIOMD0000000608_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000608#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000609](https://www.ebi.ac.uk/biomodels/BIOMD0000000609)
Reddyhoff2015 - Acetaminophen Reddyhoff2015 - Acetaminophen metabolism and toxicity
|
pass[BIOMD0000000609_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000609#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000610](https://www.ebi.ac.uk/biomodels/BIOMD0000000610)
PetelenzKuehn_osmoadaptation_gpd1D|
pass[BIOMD0000000610_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000610#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000611](https://www.ebi.ac.uk/biomodels/BIOMD0000000611)
Nayak2015 - Blood Coagulation Nayak2015 - Blood Coagulation Network - Predicting the Effects of Various Therapies on Biomarkers
|
pass[BIOMD0000000611_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000611#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000612](https://www.ebi.ac.uk/biomodels/BIOMD0000000612)
Proctor2016 - Circadian rhythmProctor2016 - Circadian rhythm of PTH and the dynamics of signaling molecules on bone remodeling
|
pass[BIOMD0000000612_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000612#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000613](https://www.ebi.ac.uk/biomodels/BIOMD0000000613)
Peterson2010 - Integrated calcPeterson2010 - Integrated calcium homeostasis and bone remodelling
|
pass[BIOMD0000000613_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000613#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000614](https://www.ebi.ac.uk/biomodels/BIOMD0000000614)
Kamihira2000 - calcitonin fibrKamihira2000 - calcitonin fibrillation kinetics
|
pass[BIOMD0000000614_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000614#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000615](https://www.ebi.ac.uk/biomodels/BIOMD0000000615)
Kuznetsov2016(II) - α-syn aggrKuznetsov2016(II) - α-syn aggregation kinetics in Parkinson's Disease
|
pass[BIOMD0000000615_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000615#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000616](https://www.ebi.ac.uk/biomodels/BIOMD0000000616)
Dunster2014 - WBC InteractionsDunster2014 - WBC Interactions (Model1)
|
pass[BIOMD0000000616_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000616#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000617](https://www.ebi.ac.uk/biomodels/BIOMD0000000617)
Walsh2014 - Inhibition kineticWalsh2014 - Inhibition kinetics of DAPT on APP Cleavage
|
pass[BIOMD0000000617_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000617#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000618](https://www.ebi.ac.uk/biomodels/BIOMD0000000618)
Krohn2011 - Cerebral amyloid-βKrohn2011 - Cerebral amyloid-β proteostasis regulated by membrane transport protein ABCC1
|
pass[BIOMD0000000618_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000618#Files)
|pass|
FAIL[BIOMD0000000618_SED-ML.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000618#Files)
|pass|
SEDMLfile```failed to validate SEDML file BIOMD0000000618_SED-ML.xml```
| -|[BIOMD0000000619](https://www.ebi.ac.uk/biomodels/BIOMD0000000619)
Sluka2016 - Acetaminophen PBPK|
pass[BIOMD0000000619_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000619#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000620](https://www.ebi.ac.uk/biomodels/BIOMD0000000620)
Palmer2014 - Effect of IL-1β-BPalmer2014 - Effect of IL-1β-Blocking therapies in T2DM - Disease Condition
|
pass[BIOMD0000000620_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000620#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000621](https://www.ebi.ac.uk/biomodels/BIOMD0000000621)
Palmer2014 - Effect of IL-1β-BPalmer2014 - Effect of IL-1β-Blocking therapies in T2DM - Healthy Condition
|
pass[BIOMD0000000621_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000621#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000622](https://www.ebi.ac.uk/biomodels/BIOMD0000000622)
NguyenLK2011 - Ubiquitination NguyenLK2011 - Ubiquitination dynamics in Ring1B/Bmi1 system
|
pass[BIOMD0000000622_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000622#Files)
|pass|
MultipleSEDMLs['NguyenLK2011_High_Free_Bmi1_Levels.sedml', 'NguyenLK2011_High_Free_Bmi1ubd_Levels.sedml']
|NA|NA| -|
[BIOMD0000000623](https://www.ebi.ac.uk/biomodels/BIOMD0000000623)
Orton2009 - Modelling cancerouOrton2009 - Modelling cancerous mutations in the EGFR/ERK pathway - EGF Model
|
pass[BIOMD0000000623_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000623#Files)
|pass|
pass[Orton2009.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000623#Files)
|FAIL|pass| -|[BIOMD0000000624](https://www.ebi.ac.uk/biomodels/BIOMD0000000624)
Sluka2016 - Acetaminophen metabolism|
pass[BIOMD0000000624_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000624#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000625](https://www.ebi.ac.uk/biomodels/BIOMD0000000625)
Leber2016 - Expanded model of Leber2016 - Expanded model of Tfh-Tfr differentiation - Helicobacter pylori infection
|
pass[BIOMD0000000625_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000625#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000626](https://www.ebi.ac.uk/biomodels/BIOMD0000000626)
Ray2013 - Meiotic initiation iRay2013 - Meiotic initiation in S. cerevisiae
|
pass[BIOMD0000000626_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000626#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000627](https://www.ebi.ac.uk/biomodels/BIOMD0000000627)
Winter2017 - Brain Energy MetaWinter2017 - Brain Energy Metabolism with PPP
|
pass[BIOMD0000000627_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000627#Files)
|pass|
FAIL[BIOMD0000000627_SED-ML.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000627#Files)
|pass|
SEDMLfile```failed to validate SEDML file BIOMD0000000627_SED-ML.xml```
| -|
[BIOMD0000000628](https://www.ebi.ac.uk/biomodels/BIOMD0000000628)
Li2012 Calcium mediated synaptLi2012 Calcium mediated synaptic plasticity
|
pass[BIOMD0000000628_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000628#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000629](https://www.ebi.ac.uk/biomodels/BIOMD0000000629)
Haffez2017 - RAR interaction wHaffez2017 - RAR interaction with synthetic analogues
|
pass[BIOMD0000000629_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000629#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000630](https://www.ebi.ac.uk/biomodels/BIOMD0000000630)
Venkatraman2011 - PLS-UPA behaVenkatraman2011 - PLS-UPA behaviour in the presence of substrate competition_1_1_1_1
|
pass[BIOMD0000000630_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000630#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000631](https://www.ebi.ac.uk/biomodels/BIOMD0000000631)
DeCaluwe2016 - Circadian Clock|
FAIL[BIOMD0000000631_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000631#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000632](https://www.ebi.ac.uk/biomodels/BIOMD0000000632)
Kollarovic2016 - Cell fate decKollarovic2016 - Cell fate decision at G1-S transition
|
pass[BIOMD0000000632_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000632#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000633](https://www.ebi.ac.uk/biomodels/BIOMD0000000633)
Bulik2016 - Regulation of hepaBulik2016 - Regulation of hepatic glucose metabolism
|
pass[BIOMD0000000633_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000633#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000634](https://www.ebi.ac.uk/biomodels/BIOMD0000000634)
Proctor2013 - Effect of Aβ immProctor2013 - Effect of Aβ immunisation in Alzheimer's disease (stochastic version)
|
pass[BIOMD0000000634_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000634#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000635](https://www.ebi.ac.uk/biomodels/BIOMD0000000635)
Nair2015 - Interaction betweenNair2015 - Interaction between neuromodulators via GPCRs - Effect on cAMP/PKA signaling (D1 Neuron)
|
pass[BIOMD0000000635_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000635#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000636](https://www.ebi.ac.uk/biomodels/BIOMD0000000636)
Nair2015 - Interaction betweenNair2015 - Interaction between neuromodulators via GPCRs - Effect on cAMP/PKA signaling (D2 Neuron)
|
pass[BIOMD0000000636_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000636#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000637](https://www.ebi.ac.uk/biomodels/BIOMD0000000637)
Bush2016 - Simplified CarrouseBush2016 - Simplified Carrousel model of GPCR
|
pass[BIOMD0000000637_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000637#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000638](https://www.ebi.ac.uk/biomodels/BIOMD0000000638)
Bush2016 - Extended Carrousel Bush2016 - Extended Carrousel model of GPCR-RGS
|
pass[BIOMD0000000638_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000638#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000639](https://www.ebi.ac.uk/biomodels/BIOMD0000000639)
Thiaville2016 - Wild type folaThiaville2016 - Wild type folate pathway model with proposed PanB reaction
|
pass[BIOMD0000000639_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000639#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000640](https://www.ebi.ac.uk/biomodels/BIOMD0000000640)
DallePezze2016 - Activation ofDallePezze2016 - Activation of AMPK and mTOR by amino acids
|
pass[BIOMD0000000640_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000640#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000641](https://www.ebi.ac.uk/biomodels/BIOMD0000000641)
Jaiswal2017 - Cell cycle arrest|
pass[BIOMD0000000641_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000641#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000642](https://www.ebi.ac.uk/biomodels/BIOMD0000000642)
Mufudza2012 - Estrogen effect Mufudza2012 - Estrogen effect on the dynamics of breast cancer
|
pass[BIOMD0000000642_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000642#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000643](https://www.ebi.ac.uk/biomodels/BIOMD0000000643)
Musante2017 - Switching behaviMusante2017 - Switching behaviour of PP2A inhibition by ARPP-16 - mutual inhibitions
|
pass[BIOMD0000000643_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000643#Files)
|pass|
FAIL[ARPP-16_Layer1_mutualInhibitions.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000643#Files)
|pass|
SEDMLfile```failed to validate SEDML file ARPP-16_Layer1_mutualInhibitions.sedml```
| -|
[BIOMD0000000644](https://www.ebi.ac.uk/biomodels/BIOMD0000000644)
Musante2017 - Switching behaviMusante2017 - Switching behaviour of PP2A inhibition by ARPP-16 - mutual inhibitions and PKA inhibits MAST3
|
pass[BIOMD0000000644_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000644#Files)
|pass|
FAIL[ARPP-16_Layer1and2_mutualInhibitions_PKAinhibitsMAST3.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000644#Files)
|pass|
SEDMLfile```failed to validate SEDML file ARPP-16_Layer1and2_mutualInhibitions_PKAinhibitsMAST3.sedml```
| -|
[BIOMD0000000645](https://www.ebi.ac.uk/biomodels/BIOMD0000000645)
Musante2017 - Switching behaviMusante2017 - Switching behaviour of PP2A inhibition by ARPP-16 - mutual inhibitions and PKA inhibits MAST3 and dominant negative effect
|
pass[BIOMD0000000645_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000645#Files)
|pass|
FAIL[ARPP-16_Layer1and2and3_mutualInhibitions_PKAinhibitsMAST3_dominantNegative.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000645#Files)
|pass|
SEDMLfile```failed to validate SEDML file ARPP-16_Layer1and2and3_mutualInhibitions_PKAinhibitsMAST3_dominantNegative.sedml```
| -|
[BIOMD0000000646](https://www.ebi.ac.uk/biomodels/BIOMD0000000646)
Barr2016 - All-or-nothing G1/SBarr2016 - All-or-nothing G1/S transition
|
pass[BIOMD0000000646_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000646#Files)
|pass|
FAIL[Barr2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000646#Files)
|pass|
SEDMLfile```failed to validate SEDML file Barr2016.sedml```
| -|
[BIOMD0000000647](https://www.ebi.ac.uk/biomodels/BIOMD0000000647)
Kwang2003 - The influence of RKwang2003 - The influence of RKIP on the ERK signaling pathway
|
pass[BIOMD0000000647_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000647#Files)
|pass|
FAIL[BIOMD0000000647.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000647#Files)
|pass|
SEDMLfile```failed to validate SEDML file BIOMD0000000647.sedml```
| -|
[BIOMD0000000648](https://www.ebi.ac.uk/biomodels/BIOMD0000000648)
Padala2017- ERK, PI3K/Akt and Padala2017- ERK, PI3K/Akt and Wnt signalling network (normal)
|
pass[BIOMD0000000648_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000648#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000650](https://www.ebi.ac.uk/biomodels/BIOMD0000000650)
Owen1998 - Tumour treatment model|
pass[BIOMD0000000650_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000650#Files)
|FAIL|
pass[MODEL1708250002_treatment_start10.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000650#Files)
|FAIL|
other```'NoneType' object is not subscriptable```
| -|
[BIOMD0000000651](https://www.ebi.ac.uk/biomodels/BIOMD0000000651)
Nguyen2016 - Feedback regulatiNguyen2016 - Feedback regulation in cell signalling: Lessons for cancer therapeutics
|
pass[BIOMD0000000651_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000651#Files)
|pass|
FAIL[BIOMD0000000651.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000651#Files)
|pass|
SEDMLfile```failed to validate SEDML file BIOMD0000000651.sedml```
| -|
[BIOMD0000000652](https://www.ebi.ac.uk/biomodels/BIOMD0000000652)
Padala2017- ERK, PI3K/Akt and Padala2017- ERK, PI3K/Akt and Wnt signalling network (PI3K mutated)
|
pass[BIOMD0000000652_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000652#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000653](https://www.ebi.ac.uk/biomodels/BIOMD0000000653)
Padala2017- ERK, PI3K/Akt and Padala2017- ERK, PI3K/Akt and Wnt signalling network (bRaf mutated)
|
pass[BIOMD0000000653_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000653#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000654](https://www.ebi.ac.uk/biomodels/BIOMD0000000654)
Padala2017- ERK, PI3K/Akt and Padala2017- ERK, PI3K/Akt and Wnt signalling network (Ras mutated)
|
pass[BIOMD0000000654_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000654#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000655](https://www.ebi.ac.uk/biomodels/BIOMD0000000655)
Padala2017- ERK, PI3K/Akt and Padala2017- ERK, PI3K/Akt and Wnt signalling network (PTEN mutation)
|
pass[BIOMD0000000655_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000655#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000656](https://www.ebi.ac.uk/biomodels/BIOMD0000000656)
Padala2017- ERK, PI3K/Akt and Padala2017- ERK, PI3K/Akt and Wnt signalling network (EGFR overexpression)
|
pass[BIOMD0000000656_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000656#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000657](https://www.ebi.ac.uk/biomodels/BIOMD0000000657)
Araujo2016 - Positive feedbackAraujo2016 - Positive feedback in Cdk1 signalling keeps mitotic duration short and constant
|
pass[BIOMD0000000657.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000657#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000658](https://www.ebi.ac.uk/biomodels/BIOMD0000000658)
Lee2003 - Roles of APC and AxiLee2003 - Roles of APC and Axin in Wnt Pathway (without regulatory loop)
|
pass[BIOMD0000000658_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000658#Files)
|pass|
pass[MODEL1708310000_edited.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000658#Files)
|FAIL|pass| -|
[BIOMD0000000659](https://www.ebi.ac.uk/biomodels/BIOMD0000000659)
Cursons2015 - Regulation of ERCursons2015 - Regulation of ERK-MAPK signaling in human epidermis
|
pass[BIOMD0000000659_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000659#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000660](https://www.ebi.ac.uk/biomodels/BIOMD0000000660)
Barr2017 - Dynamics of p21 in Barr2017 - Dynamics of p21 in hTert-RPE1 cells
|
pass[BIOMD0000000660_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000660#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000661](https://www.ebi.ac.uk/biomodels/BIOMD0000000661)
Webb2002 - Fas/FasL mediated tWebb2002 - Fas/FasL mediated tumor T-cell interaction
|
pass[BIOMD0000000661_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000661#Files)
|pass|
FAIL[MODEL1006230046.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000661#Files)
|pass|
SEDMLfile```failed to validate SEDML file MODEL1006230046.sedml```
| -|
[BIOMD0000000662](https://www.ebi.ac.uk/biomodels/BIOMD0000000662)
Moore2004 - Chronic Myeloid LeMoore2004 - Chronic Myeloid Leukemic cells and T-lymphocyte interaction
|
pass[BIOMD0000000662_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000662#Files)
|FAIL|
pass[Moore2004.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000662#Files)
|FAIL|pass| -|
[BIOMD0000000663](https://www.ebi.ac.uk/biomodels/BIOMD0000000663)
Wodarz2007 - HIV/CD4 T-cell inWodarz2007 - HIV/CD4 T-cell interaction
|
pass[BIOMD0000000663_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000663#Files)
|pass|
pass[Wodarz2007_model_2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000663#Files)
|FAIL|pass| -|
[BIOMD0000000664](https://www.ebi.ac.uk/biomodels/BIOMD0000000664)
Muller2008 - Simplified MAPK aMuller2008 - Simplified MAPK activation Dynamics (Model B)
|
pass[BIOMD0000000664_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000664#Files)
|FAIL|
pass[MODEL8687732743.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000664#Files)
|FAIL|pass| -|[BIOMD0000000665](https://www.ebi.ac.uk/biomodels/BIOMD0000000665)
Fallon2000 - Interleukin-2 dynamics|
pass[BIOMD0000000665_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000665#Files)
|FAIL|
pass[MODEL1006230001.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000665#Files)
|FAIL|pass| -|
[BIOMD0000000666](https://www.ebi.ac.uk/biomodels/BIOMD0000000666)
Pappalardo2016 - PI3K/AKT and Pappalardo2016 - PI3K/AKT and MAPK Signaling Pathways in Melanoma Cancer
|
pass[BIOMD0000000666_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000666#Files)
|pass|
pass[BIOMD0000000666.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000666#Files)
|FAIL|pass| -|[BIOMD0000000667](https://www.ebi.ac.uk/biomodels/BIOMD0000000667)
Hornberg2005 - MAPKsignalling|
pass[BIOMD0000000667_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000667#Files)
|pass|
pass[MODEL0848279215.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000667#Files)
|FAIL|pass| -|
[BIOMD0000000668](https://www.ebi.ac.uk/biomodels/BIOMD0000000668)
Zhu2015 - Combined gemcitabineZhu2015 - Combined gemcitabine and birinapant in pancreatic cancer cells - basic PD model
|
pass[BIOMD0000000668_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000668#Files)
|pass|
pass[MODEL1604270000_basic.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000668#Files)
|FAIL|pass| -|
[BIOMD0000000669](https://www.ebi.ac.uk/biomodels/BIOMD0000000669)
Zhu2015 - Combined gemcitabineZhu2015 - Combined gemcitabine and birinapant in pancreatic cancer cells - mechanistic PD model
|
pass[BIOMD0000000669_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000669#Files)
|pass|
pass[MODEL1604270001_mechanistic.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000669#Files)
|FAIL|pass| -|[BIOMD0000000670](https://www.ebi.ac.uk/biomodels/BIOMD0000000670)
Owen1998 - tumour growth model|
pass[BIOMD0000000670_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000670#Files)
|FAIL|
pass[MODEL1708240000.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000670#Files)
|FAIL|pass| -|
[BIOMD0000000671](https://www.ebi.ac.uk/biomodels/BIOMD0000000671)
Murphy2016 - Differences in prMurphy2016 - Differences in predictions of ODE models of tumor growth
|
pass[BIOMD0000000671_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000671#Files)
|FAIL|
pass[MODEL1708250001.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000671#Files)
|FAIL|pass| -|[BIOMD0000000672](https://www.ebi.ac.uk/biomodels/BIOMD0000000672)
Brown1997 - Plasma Melatonin Levels|
pass[BIOMD0000000672_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000672#Files)
|pass|
pass[MODEL1006230019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000672#Files)
|FAIL|pass| -|
[BIOMD0000000673](https://www.ebi.ac.uk/biomodels/BIOMD0000000673)
Lockwood2006 - Alzheimer's DisLockwood2006 - Alzheimer's Disease PBPK model
|
pass[BIOMD0000000673_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000673#Files)
|pass|
FAIL[MODEL1006230054_edited.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000673#Files)
|pass|
SEDMLfile```failed to validate SEDML file MODEL1006230054_edited.sedml```
| -|
[BIOMD0000000674](https://www.ebi.ac.uk/biomodels/BIOMD0000000674)
Reyes-Palomares2012 - a combinReyes-Palomares2012 - a combined model hepatic polyamine and sulfur aminoacid metabolism - version1
|
pass[BIOMD0000000674_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000674#Files)
|FAIL|
pass[MODEL1305060000_edited.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000674#Files)
|FAIL|pass| -|[BIOMD0000000675](https://www.ebi.ac.uk/biomodels/BIOMD0000000675)
Chen2000_CellCycle|
pass[BIOMD0000000675.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000675#Files)
|pass|
FAIL[MODEL1006230004.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000675#Files)
|pass|
SEDMLfile```failed to validate SEDML file MODEL1006230004.sedml```
| -|
[BIOMD0000000676](https://www.ebi.ac.uk/biomodels/BIOMD0000000676)
Chen2006 - Nitric Oxide ReleasChen2006 - Nitric Oxide Release from Endothelial Cells
|
pass[BIOMD0000000676_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000676#Files)
|pass|
pass[MODEL1006230005.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000676#Files)
|FAIL|pass| -|
[BIOMD0000000677](https://www.ebi.ac.uk/biomodels/BIOMD0000000677)
Holmes2006 - Hill's model of mHolmes2006 - Hill's model of muscle contraction
|
pass[BIOMD0000000677_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000677#Files)
|pass|
pass[MODEL1006230007.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000677#Files)
|FAIL|pass| -|
[BIOMD0000000678](https://www.ebi.ac.uk/biomodels/BIOMD0000000678)
Tomida2003 - Calcium OscillatoTomida2003 - Calcium Oscillatory-induced translocation of nuclear factor of activated T cells
|
pass[BIOMD0000000678_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000678#Files)
|pass|
FAIL[MODEL0912160005.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000678#Files)
|pass|
SEDMLfile```failed to validate SEDML file MODEL0912160005.sedml```
| -|
[BIOMD0000000679](https://www.ebi.ac.uk/biomodels/BIOMD0000000679)
Waugh2006 - Diabetic Wound HeaWaugh2006 - Diabetic Wound Healing - Macrophage Dynamics
|
pass[Waugh2006_1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000679#Files)
|FAIL|
pass[Waugh2006_1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000679#Files)
|FAIL|pass| -|
[BIOMD0000000680](https://www.ebi.ac.uk/biomodels/BIOMD0000000680)
Waugh2006 - Diabetic Wound HeaWaugh2006 - Diabetic Wound Healing - TGF-B Dynamics
|
pass[BIOMD0000000680_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000680#Files)
|FAIL|
pass[Waugh2006_2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000680#Files)
|FAIL|pass| -|
[BIOMD0000000681](https://www.ebi.ac.uk/biomodels/BIOMD0000000681)
Waugh2006 - Diabetic Wound HeaWaugh2006 - Diabetic Wound Healing - Treated and Untreated Macrophage Dynamics
|
pass[BIOMD0000000681_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000681#Files)
|FAIL|
pass[Waugh2006_3.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000681#Files)
|FAIL|pass| -|
[BIOMD0000000682](https://www.ebi.ac.uk/biomodels/BIOMD0000000682)
Wierschem2004 - Electrical burWierschem2004 - Electrical bursting activity in Pancreatic Islets
|
pass[BIOMD0000000682_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000682#Files)
|pass|
pass[MODEL1006230006.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000682#Files)
|FAIL|pass| -|[BIOMD0000000683](https://www.ebi.ac.uk/biomodels/BIOMD0000000683)
Wodarz1999 CTL memory response HIV|
pass[MODEL1006230062.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000683#Files)
|pass|
pass[MODEL1006230062.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000683#Files)
|FAIL|pass| -|[BIOMD0000000684](https://www.ebi.ac.uk/biomodels/BIOMD0000000684)
Wodarz2003 - Immunological Memory|
pass[BIOMD0000000684_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000684#Files)
|pass|
pass[MODEL1006230061.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000684#Files)
|FAIL|pass| -|
[BIOMD0000000685](https://www.ebi.ac.uk/biomodels/BIOMD0000000685)
Wodarz2003 - Cytotoxic T lymphWodarz2003 - Cytotoxic T lymphocyte cross-priming
|
pass[BIOMD0000000685_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000685#Files)
|pass|
pass[MODEL1006230094.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000685#Files)
|FAIL|pass| -|
[BIOMD0000000686](https://www.ebi.ac.uk/biomodels/BIOMD0000000686)
Wodarz2007 - Basic Model of CyWodarz2007 - Basic Model of Cytomegalovirus Infection
|
pass[BIOMD0000000686_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000686#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000687](https://www.ebi.ac.uk/biomodels/BIOMD0000000687)
Wodarz2007 - Cytomegalovirus iWodarz2007 - Cytomegalovirus infection model with cytotoxic T lymphocyte response
|
pass[BIOMD0000000687_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000687#Files)
|pass|
pass[MODEL1006230052.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000687#Files)
|FAIL|pass| -|
[BIOMD0000000688](https://www.ebi.ac.uk/biomodels/BIOMD0000000688)
Wodarz2007 - Cytomegalovirus iWodarz2007 - Cytomegalovirus infection model with cytotoxic T lymphocyte and natural killer cell response
|
pass[BIOMD0000000688_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000688#Files)
|pass|
pass[MODEL1006230097.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000688#Files)
|FAIL|pass| -|
[BIOMD0000000689](https://www.ebi.ac.uk/biomodels/BIOMD0000000689)
Thiaville2016 - Folate pathwayThiaville2016 - Folate pathway model (PanB overexpression)
|
pass[BIOMD0000000689_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000689#Files)
|pass|
pass[MODEL1602280002.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000689#Files)
|FAIL|pass| -|
[BIOMD0000000690](https://www.ebi.ac.uk/biomodels/BIOMD0000000690)
Thiaville2016 - Folate pathwayThiaville2016 - Folate pathway model (PanB overexpression and THF regulation)
|
pass[BIOMD0000000690_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000690#Files)
|pass|
pass[MODEL1602280003.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000690#Files)
|FAIL|pass| -|
[BIOMD0000000691](https://www.ebi.ac.uk/biomodels/BIOMD0000000691)
Wolf2000 - Cellular interactioWolf2000 - Cellular interaction on glycolytic oscillations in yeast
|
pass[BIOMD0000000691_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000691#Files)
|pass|
pass[MODEL1006230022.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000691#Files)
|FAIL|
CV_TOO_MUCH_WORK```CVODE Error: CV_TOO_MUCH_WORK: The solver took mxstep (20000) internal steps but could not reach tout.; In virtual double rr::CVODEIntegrator::integrate(double, double)```
| -|
[BIOMD0000000692](https://www.ebi.ac.uk/biomodels/BIOMD0000000692)
Phillips2003 - The Mechanism oPhillips2003 - The Mechanism of Ras GTPase Activation by Neurofibromin
|
pass[BIOMD0000000692_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000692#Files)
|pass|
pass[MODEL4968912141.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000692#Files)
|FAIL|pass| -|
[BIOMD0000000693](https://www.ebi.ac.uk/biomodels/BIOMD0000000693)
Wang2008 - Mimicking the inhibWang2008 - Mimicking the inhibitory effect of riluzole on membrane conductance in skeletal fibres
|
pass[BIOMD0000000693_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000693#Files)
|FAIL|
pass[MODEL7817907010.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000693#Files)
|FAIL|pass| -|
[BIOMD0000000695](https://www.ebi.ac.uk/biomodels/BIOMD0000000695)
FelixGarza2017 - Blue Light TrFelixGarza2017 - Blue Light Treatment of Psoriasis (simplified)
|
pass[BIOMD0000000695_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000695#Files)
|pass|
pass[MODEL1701090001.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000695#Files)
|FAIL|pass| -|
[BIOMD0000000696](https://www.ebi.ac.uk/biomodels/BIOMD0000000696)
Boada2016 - Incoherent type 1 Boada2016 - Incoherent type 1 feed-forward loop (I1-FFL)
|
pass[BIOMD0000000696_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000696#Files)
|pass|
pass[MODEL1511290000.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000696#Files)
|FAIL|
CV_CONV_FAILURE```CVODE Error: CV_CONV_FAILURE: Convergence test failures occurred too many times (= MXNCF = 10) during one internal timestep or occurred with |h| = hmin.; In virtual double rr::CVODEIntegrator::integrate(double, double)```
| -|
[BIOMD0000000697](https://www.ebi.ac.uk/biomodels/BIOMD0000000697)
Ciliberto2003 - CyclinE / Cdk2Ciliberto2003 - CyclinE / Cdk2 timer in the cell cycle of Xenopus laevis embryo
|
pass[BIOMD0000000697_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000697#Files)
|FAIL|
MultipleSEDMLs['MODEL0913242281_fig6.sedml', 'MODEL0913242281_fig5.sedml']
|NA|NA| -|[BIOMD0000000698](https://www.ebi.ac.uk/biomodels/BIOMD0000000698)
Reed2004 - Methionine Cycle|
pass[BIOMD0000000698_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000698#Files)
|pass|
pass[MODEL1006230091.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000698#Files)
|FAIL|pass| -|
[BIOMD0000000699](https://www.ebi.ac.uk/biomodels/BIOMD0000000699)
Caydasi2012 - Regulation of TeCaydasi2012 - Regulation of Tem1 by the GAP complex in spindle position cell cycle checkpoint - Ubiquitous association model
|
pass[BIOMD0000000699_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000699#Files)
|FAIL|
FAIL[MODEL1202090002_Fig5 i.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000699#Files)
|pass|
SEDMLfile```failed to validate SEDML file MODEL1202090002_Fig5 i.sedml```
| -|
[BIOMD0000000700](https://www.ebi.ac.uk/biomodels/BIOMD0000000700)
Heldt2018 - Proliferation-quieHeldt2018 - Proliferation-quiescence decision in response to DNA damage
|
pass[BIOMD0000000700_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000700#Files)
|pass|
pass[figure1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000700#Files)
|FAIL|pass| -|
[BIOMD0000000701](https://www.ebi.ac.uk/biomodels/BIOMD0000000701)
Caydasi2012 - Inhibition of TeCaydasi2012 - Inhibition of Tem1 by the GAP complex in Spindle Position Checkpoint
|
pass[MODEL1202090001_FINAL.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000701#Files)
|FAIL|
FAIL[MODEL1202090001_FINAL.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000701#Files)
|pass|
SEDMLfile```failed to validate SEDML file MODEL1202090001_FINAL.sedml```
| -|
[BIOMD0000000702](https://www.ebi.ac.uk/biomodels/BIOMD0000000702)
Caydasi2012 - Regulation of TeCaydasi2012 - Regulation of Tem1 by the GAP complex in Spindle Position Checkpoint - Ubiquitous inactive model
|
pass[BIOMD0000000702_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000702#Files)
|FAIL|
pass[MODEL1202090003_Fig5 iii.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000702#Files)
|FAIL|pass| -|
[BIOMD0000000703](https://www.ebi.ac.uk/biomodels/BIOMD0000000703)
Diedrichs2018 - A data-entrainDiedrichs2018 - A data-entrained computational model for testing the regulatory logic of the vertebrate unfolded protein response
|
pass[BIOMD0000000703_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000703#Files)
|FAIL|NoSEDML|NA|NA| -|[BIOMD0000000704](https://www.ebi.ac.uk/biomodels/BIOMD0000000704)
Aguda1999 - G2 DNA damage checkpoint|
pass[BIOMD0000000704_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000704#Files)
|pass|
pass[figure8.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000704#Files)
|FAIL|pass| -|
[BIOMD0000000705](https://www.ebi.ac.uk/biomodels/BIOMD0000000705)
Smith2010 - Response of FOXO TSmith2010 - Response of FOXO Transcription Factors to Post-Translational Modifications Made by Ageing-Related Signalling Pathways
|
pass[BIOMD0000000705_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000705#Files)
|pass|
MultipleSEDMLs['Smith2010_figure_4C_red_curve.sedml', 'Smith2010_figure_4C_blue_curve.sedml']
|NA|NA| -|
[BIOMD0000000706](https://www.ebi.ac.uk/biomodels/BIOMD0000000706)
Smith2010 - Response of FOXO TSmith2010 - Response of FOXO Transcription Factors to Post-Translational Modifications (with acetylation pathway)
|
pass[BIOMD0000000706_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000706#Files)
|pass|
MultipleSEDMLs['Smith2010_figure_4D_red_curve.sedml', 'Smith2010_figure_4D_blue_curve.sedml']
|NA|NA| -|
[BIOMD0000000707](https://www.ebi.ac.uk/biomodels/BIOMD0000000707)
Revilla2003 - Controlling HIV Revilla2003 - Controlling HIV infection using recombinant viruses
|
pass[MODEL1006230047.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000707#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000708](https://www.ebi.ac.uk/biomodels/BIOMD0000000708)
Liu2017 - Dynamics of Avian InLiu2017 - Dynamics of Avian Influenza with Logistic Growth
|
pass[Liu2017 - Dynamics of Avian Influenza with Logistic Growth.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000708#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000709](https://www.ebi.ac.uk/biomodels/BIOMD0000000709)
Liu2017 - Dynamics of Avian InLiu2017 - Dynamics of Avian Influenza with Allee Growth Effect
|
pass[Liu2017 - Dynamics of Avian Influenza with Allee Growth Effect.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000709#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000710](https://www.ebi.ac.uk/biomodels/BIOMD0000000710)
Hernandez-Vargas2012 - Innate Hernandez-Vargas2012 - Innate immune system dynamics to Influenza virus
|
pass[Hernandez-Vargas2012 - Innate immune system dynamics to Influenza virus.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000710#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000711](https://www.ebi.ac.uk/biomodels/BIOMD0000000711)
Hancioglu2007 - Human Immune RHancioglu2007 - Human Immune Response to Influenza A virus Infection
|
pass[Hancioglu2007 - Human Immune Response to Influenza A virus.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000711#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000712](https://www.ebi.ac.uk/biomodels/BIOMD0000000712)
Manchanda2014 - Effect on ImmuManchanda2014 - Effect on Immune System by 4 different Influenza A virus strains
|
pass[Jena5258.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000712#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000713](https://www.ebi.ac.uk/biomodels/BIOMD0000000713)
Aston2018 - Dynamics of HepatiAston2018 - Dynamics of Hepatitis C Infection
|
pass[PVR.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000713#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000714](https://www.ebi.ac.uk/biomodels/BIOMD0000000714)
Reynolds2006 - Reduced model oReynolds2006 - Reduced model of the acute inflammatory response
|
pass[HealthyOutcome.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000714#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000715](https://www.ebi.ac.uk/biomodels/BIOMD0000000715)
Huo2017 - SEIS epidemic model Huo2017 - SEIS epidemic model with the impact of media
|
pass[Epidemic Model with the impact of Media Reactions.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000715#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000716](https://www.ebi.ac.uk/biomodels/BIOMD0000000716)
Lee2018 - Avian human bilinearLee2018 - Avian human bilinear incidence (BI) model
|
pass[BI reactions.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000716#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000717](https://www.ebi.ac.uk/biomodels/BIOMD0000000717)
Lee2018 - Avian human half-satLee2018 - Avian human half-saturated incidence (HSI) model
|
pass[HSI reactions.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000717#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000718](https://www.ebi.ac.uk/biomodels/BIOMD0000000718)
Li2008 - Caulobacter Cell Cycle|
pass[Li2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000718#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000719](https://www.ebi.ac.uk/biomodels/BIOMD0000000719)
Tsai2014 - Cell cycle durationTsai2014 - Cell cycle duration control by oscillatory Dynamics in Early Xenopus laevis Embryos
|
pass[Tsai2014.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000719#Files)
|pass|
pass[tsai2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000719#Files)
|FAIL|pass| -|
[BIOMD0000000720](https://www.ebi.ac.uk/biomodels/BIOMD0000000720)
Yan2012 - Rb-E2F pathway dynamYan2012 - Rb-E2F pathway dynamics with miR449
|
pass[Yan2012.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000720#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000721](https://www.ebi.ac.uk/biomodels/BIOMD0000000721)
Graham2013 - Role of osteocyteGraham2013 - Role of osteocytes in targeted bone remodeling
|
pass[Model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000721#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000722](https://www.ebi.ac.uk/biomodels/BIOMD0000000722)
Bianchi2015 -Model for lymphanBianchi2015 -Model for lymphangiogenesis in normal and diabetic wounds
|
pass[Wound Healing with Normal health condition.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000722#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000723](https://www.ebi.ac.uk/biomodels/BIOMD0000000723)
Weis2014 - Data driven MammaliWeis2014 - Data driven Mammalian Cell Cycle Model
|
pass[Weis2014.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000723#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000724](https://www.ebi.ac.uk/biomodels/BIOMD0000000724)
Theinmozhi2018 - Mechanism of Theinmozhi2018 - Mechanism of PD1 inhibiting TCR signaling in Tumor immune regulation
|
pass[Theinmozhi_2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000724#Files)
|pass|
pass[Theinmozhi_2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000724#Files)
|pass|pass| -|
[BIOMD0000000725](https://www.ebi.ac.uk/biomodels/BIOMD0000000725)
Salcedo-Sora2016 - Microbial fSalcedo-Sora2016 - Microbial folate biosynthesis and utilisation
|
pass[Model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000725#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000726](https://www.ebi.ac.uk/biomodels/BIOMD0000000726)
Ruan2017 - Transmission dynamiRuan2017 - Transmission dynamics and control of rabies in China
|
pass[Model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000726#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000727](https://www.ebi.ac.uk/biomodels/BIOMD0000000727)
Li2009- Assymetric CaulobacterLi2009- Assymetric Caulobacter cell cycle
|
pass[Li2009.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000727#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000728](https://www.ebi.ac.uk/biomodels/BIOMD0000000728)
Norel1990 - MPF and Cyclin OscNorel1990 - MPF and Cyclin Oscillations
|
pass[Norell1990.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000728#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000729](https://www.ebi.ac.uk/biomodels/BIOMD0000000729)
Goldbeter1996 - Cyclin Cdc2 kiGoldbeter1996 - Cyclin Cdc2 kinase Oscillations
|
pass[Goldbeter1996.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000729#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000730](https://www.ebi.ac.uk/biomodels/BIOMD0000000730)
Gerard2009 - An Integrated MamGerard2009 - An Integrated Mammalian Cell Cycle Model
|
pass[Gerard2009.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000730#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000731](https://www.ebi.ac.uk/biomodels/BIOMD0000000731)
Robertson-Tessi M 2012 A modelRobertson-Tessi M 2012 A model of tumor Immune interaction
|
pass[22051568_Tessi.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000731#Files)
|FAIL|
FAIL[22051568_Tessi.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000731#Files)
|pass|
SEDMLfile```failed to validate SEDML file 22051568_Tessi.sedml```
| -|[BIOMD0000000732](https://www.ebi.ac.uk/biomodels/BIOMD0000000732)
Kirschner1998_Immunotherapy_Tumour|
pass[Kirschner_1998.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000732#Files)
|FAIL|
FAIL[Kirschner_1998.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000732#Files)
|pass|
SEDMLfile```failed to validate SEDML file Kirschner_1998.sedml```
| -|
[BIOMD0000000733](https://www.ebi.ac.uk/biomodels/BIOMD0000000733)
Moore_2004_Mathematical model Moore_2004_Mathematical model for CML and T cell interaction
|
pass[Moore_2004_fig6.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000733#Files)
|FAIL|
pass[Moore_2004_fig6.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000733#Files)
|FAIL|pass| -|
[BIOMD0000000734](https://www.ebi.ac.uk/biomodels/BIOMD0000000734)
Mouse Iron Distribution - RichMouse Iron Distribution - Rich and Deficient iron diets (tracer)
|
pass[BIOMD0000000734.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000734#Files)
|pass|
pass[Parmar2017_Deficient_Rich_tracer.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000734#Files)
|FAIL|pass| -|
[BIOMD0000000735](https://www.ebi.ac.uk/biomodels/BIOMD0000000735)
Mouse Iron Distribution - AdeqMouse Iron Distribution - Adequate iron diet (tracer)
|
pass[Parmar2017_Adequate_tracer.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000735#Files)
|pass|
pass[Parmar2017_Adequate_tracer.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000735#Files)
|FAIL|pass| -|
[BIOMD0000000736](https://www.ebi.ac.uk/biomodels/BIOMD0000000736)
Mouse Iron Distribution - AdeqMouse Iron Distribution - Adequate iron diet (No Tracer)
|
pass[Parmar2017_Adequate_diet_Anemia_NoTracer.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000736#Files)
|pass|
pass[Parmar2017_Adequate_diet_Anemia_NoTracer.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000736#Files)
|FAIL|pass| -|
[BIOMD0000000737](https://www.ebi.ac.uk/biomodels/BIOMD0000000737)
Mouse Iron Distribution - DefiMouse Iron Distribution - Deficient iron diet (No Tracer)
|
pass[Parmar2017_Deficient_NoTracer.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000737#Files)
|pass|
pass[Parmar2017_Deficient_NoTracer.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000737#Files)
|FAIL|pass| -|
[BIOMD0000000738](https://www.ebi.ac.uk/biomodels/BIOMD0000000738)
Mouse Iron Distribution - RichMouse Iron Distribution - Rich iron diet (No Tracer)
|
pass[Parmar2017_Rich_NoTracer.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000738#Files)
|pass|
pass[Parmar2017_Rich_NoTracer.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000738#Files)
|FAIL|pass| -|
[BIOMD0000000739](https://www.ebi.ac.uk/biomodels/BIOMD0000000739)
Bravo2012 - Modelling blood coBravo2012 - Modelling blood coagulation factor Va inactivation by APC
|
pass[Bravo2012.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000739#Files)
|pass|
pass[Bravo2012.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000739#Files)
|FAIL|pass| -|
[BIOMD0000000740](https://www.ebi.ac.uk/biomodels/BIOMD0000000740)
Panteleev2010 - Blood CoagulatPanteleev2010 - Blood Coagulation: Full Model
|
pass[Panteleev2010_full_model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000740#Files)
|pass|
pass[Panteleev2010_full_model.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000740#Files)
|FAIL|pass| -|
[BIOMD0000000741](https://www.ebi.ac.uk/biomodels/BIOMD0000000741)
Eftimie2018 - Cancer and ImmunEftimie2018 - Cancer and Immune biomarkers
|
pass[Eftimie2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000741#Files)
|FAIL|
FAIL[Eftimie2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000741#Files)
|pass|
SEDMLfile```failed to validate SEDML file Eftimie2018.sedml```
| -|
[BIOMD0000000742](https://www.ebi.ac.uk/biomodels/BIOMD0000000742)
Garcia2018basic - cancer and iGarcia2018basic - cancer and immune cell count basic model
|
pass[Garcia2018basic.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000742#Files)
|FAIL|
FAIL[Garcia2018basic.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000742#Files)
|pass|
SEDMLfile```failed to validate SEDML file Garcia2018basic.sedml```
| -|
[BIOMD0000000743](https://www.ebi.ac.uk/biomodels/BIOMD0000000743)
Gallaher2018 - Tumor–Immune dyGallaher2018 - Tumor–Immune dynamics in multiple myeloma
|
pass[Gallaher2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000743#Files)
|FAIL|
pass[Gallaher2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000743#Files)
|FAIL|pass| -|[BIOMD0000000744](https://www.ebi.ac.uk/biomodels/BIOMD0000000744)
Hu2019 - Pancreatic cancer dynamics|
pass[Hu2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000744#Files)
|FAIL|
pass[Hu2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000744#Files)
|FAIL|pass| -|
[BIOMD0000000745](https://www.ebi.ac.uk/biomodels/BIOMD0000000745)
Jarrett2018 - trastuzumab-induJarrett2018 - trastuzumab-induced immune response in murine HER2+ breast cancer model
|
pass[Jarrett2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000745#Files)
|FAIL|
pass[Jarrett2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000745#Files)
|FAIL|pass| -|
[BIOMD0000000746](https://www.ebi.ac.uk/biomodels/BIOMD0000000746)
Saad2017 - immune checkpoint aSaad2017 - immune checkpoint and BCG in superficial bladder cancer
|
pass[Saad2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000746#Files)
|FAIL|
pass[Saad2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000746#Files)
|FAIL|pass| -|
[BIOMD0000000747](https://www.ebi.ac.uk/biomodels/BIOMD0000000747)
Nagashima2002 - Simulating bloNagashima2002 - Simulating blood coagulation inhibitory effects
|
pass[Nagashima2002.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000747#Files)
|pass|
pass[Nagashima2002.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000747#Files)
|FAIL|pass| -|
[BIOMD0000000748](https://www.ebi.ac.uk/biomodels/BIOMD0000000748)
Phan2017 - innate immune in onPhan2017 - innate immune in oncolytic virotherapy
|
pass[Phan2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000748#Files)
|FAIL|
pass[Phan2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000748#Files)
|FAIL|pass| -|
[BIOMD0000000749](https://www.ebi.ac.uk/biomodels/BIOMD0000000749)
Reppas2015 - tumor control viaReppas2015 - tumor control via alternating immunostimulating and immunosuppressive phases
|
pass[Reppas2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000749#Files)
|FAIL|
pass[Reppas2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000749#Files)
|FAIL|pass| -|
[BIOMD0000000750](https://www.ebi.ac.uk/biomodels/BIOMD0000000750)
Lolas2016 - tumour-induced neoLolas2016 - tumour-induced neoneurogenesis and perineural tumour growth
|
pass[Lolas2016.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000750#Files)
|FAIL|
pass[Lolas2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000750#Files)
|FAIL|pass| -|
[BIOMD0000000751](https://www.ebi.ac.uk/biomodels/BIOMD0000000751)
Wilkie2013b - immune-induced cWilkie2013b - immune-induced cancer dormancy and immune evasion-basic
|
pass[Wilkie2013b.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000751#Files)
|FAIL|
pass[Wilkie2013b.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000751#Files)
|FAIL|pass| -|
[BIOMD0000000752](https://www.ebi.ac.uk/biomodels/BIOMD0000000752)
Wilkie2013r - immune-induced cWilkie2013r - immune-induced cancer dormancy and immune evasion-resistance
|
pass[Wilkie2013r.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000752#Files)
|FAIL|
pass[Wilkie2013r.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000752#Files)
|FAIL|pass| -|
[BIOMD0000000753](https://www.ebi.ac.uk/biomodels/BIOMD0000000753)
Figueredo2013/1 - immunointeraFigueredo2013/1 - immunointeraction base model
|
pass[Figueredo2013:1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000753#Files)
|FAIL|
pass[Figueredo2013:1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000753#Files)
|FAIL|pass| -|
[BIOMD0000000754](https://www.ebi.ac.uk/biomodels/BIOMD0000000754)
Figueredo2013/2 - immunointeraFigueredo2013/2 - immunointeraction model with IL2
|
pass[Figueredo2013:2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000754#Files)
|FAIL|
pass[Figueredo2013:2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000754#Files)
|FAIL|pass| -|
[BIOMD0000000755](https://www.ebi.ac.uk/biomodels/BIOMD0000000755)
Hansen2019 - Nine species reduHansen2019 - Nine species reduced model of blood coagulation
|
pass[Hansen2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000755#Files)
|pass|
FAIL[Hansen2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000755#Files)
|pass|
SEDMLfile```failed to validate SEDML file Hansen2019.sedml```
| -|
[BIOMD0000000756](https://www.ebi.ac.uk/biomodels/BIOMD0000000756)
Figueredo2013/3 - immunointeraFigueredo2013/3 - immunointeraction full model
|
pass[Figueredo2013:3.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000756#Files)
|FAIL|
pass[Figueredo2013:3.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000756#Files)
|FAIL|pass| -|
[BIOMD0000000757](https://www.ebi.ac.uk/biomodels/BIOMD0000000757)
Abernathy2016 - glioblastoma tAbernathy2016 - glioblastoma treatment
|
pass[Abernathy2016.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000757#Files)
|FAIL|
pass[Abernathy2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000757#Files)
|FAIL|pass| -|[BIOMD0000000758](https://www.ebi.ac.uk/biomodels/BIOMD0000000758)
Babbs2012 - immunotherapy|
pass[Babbs2012.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000758#Files)
|FAIL|
pass[Babbs2012.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000758#Files)
|FAIL|pass| -|
[BIOMD0000000759](https://www.ebi.ac.uk/biomodels/BIOMD0000000759)
den Breems2015 - macrophage inden Breems2015 - macrophage in cancer
|
pass[denBreems2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000759#Files)
|FAIL|
pass[denBreems2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000759#Files)
|FAIL|pass| -|
[BIOMD0000000760](https://www.ebi.ac.uk/biomodels/BIOMD0000000760)
Feizabadi2011/1 - immunodeficiFeizabadi2011/1 - immunodeficiency in cancer core model
|
pass[Feizabadi2011_1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000760#Files)
|FAIL|
pass[Feizabadi2011_1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000760#Files)
|FAIL|pass| -|
[BIOMD0000000761](https://www.ebi.ac.uk/biomodels/BIOMD0000000761)
Cappuccio2006 - Cancer immunotCappuccio2006 - Cancer immunotherapy by interleukin-21
|
pass[Cappuccio2006 v2.0.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000761#Files)
|FAIL|
pass[Cappuccio2006 v9.0.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000761#Files)
|FAIL|pass| -|
[BIOMD0000000762](https://www.ebi.ac.uk/biomodels/BIOMD0000000762)
Kuznetsov1994 - Nonlinear dynaKuznetsov1994 - Nonlinear dynamics of immunogenic tumors
|
pass[Kuznetsov1994.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000762#Files)
|pass|
pass[Kuznetsov1994.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000762#Files)
|FAIL|pass| -|
[BIOMD0000000763](https://www.ebi.ac.uk/biomodels/BIOMD0000000763)
Dritschel2018 - A mathematicalDritschel2018 - A mathematical model of cytotoxic and helper T cell interactions in a tumour microenvironment
|
pass[Dritschel2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000763#Files)
|FAIL|
pass[Dritschel2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000763#Files)
|FAIL|pass| -|[BIOMD0000000764](https://www.ebi.ac.uk/biomodels/BIOMD0000000764)
Malinzi2019 - chemovirotherapy|
pass[Malinzi2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000764#Files)
|FAIL|
pass[Malinzi2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000764#Files)
|FAIL|pass| -|
[BIOMD0000000765](https://www.ebi.ac.uk/biomodels/BIOMD0000000765)
Mager2005 - Quasi-equilibrium Mager2005 - Quasi-equilibrium pharmacokinetic model for drugs exhibiting target-mediated drug disposition
|
pass[Mager2005.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000765#Files)
|pass|
pass[Mager2005.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000765#Files)
|FAIL|pass| -|
[BIOMD0000000766](https://www.ebi.ac.uk/biomodels/BIOMD0000000766)
Macnamara2015/1 - virotherapy Macnamara2015/1 - virotherapy full model
|
pass[Macnamara2015:1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000766#Files)
|FAIL|
pass[Macnamara2015:1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000766#Files)
|FAIL|pass| -|
[BIOMD0000000767](https://www.ebi.ac.uk/biomodels/BIOMD0000000767)
Macnamara2015/2 - virotherapy Macnamara2015/2 - virotherapy virus-free submodel
|
pass[Macnamara2015:2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000767#Files)
|FAIL|
pass[Macnamara2015:2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000767#Files)
|FAIL|pass| -|[BIOMD0000000768](https://www.ebi.ac.uk/biomodels/BIOMD0000000768)
Eftimie2010 - immunity to melanoma|
pass[Eftimie2010.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000768#Files)
|FAIL|
pass[Eftimie2010.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000768#Files)
|FAIL|pass| -|
[BIOMD0000000769](https://www.ebi.ac.uk/biomodels/BIOMD0000000769)
Eftimie2017/2 - interaction ofEftimie2017/2 - interaction of Th and macrophage in melanoma
|
pass[Eftimie2017:2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000769#Files)
|FAIL|
pass[Eftimie2017:2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000769#Files)
|FAIL|pass| -|
[BIOMD0000000770](https://www.ebi.ac.uk/biomodels/BIOMD0000000770)
Eftimie2017/1 - interaction ofEftimie2017/1 - interaction of Th and macrophage
|
pass[Eftimie2017:1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000770#Files)
|FAIL|
pass[Eftimie2017:1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000770#Files)
|FAIL|pass| -|
[BIOMD0000000771](https://www.ebi.ac.uk/biomodels/BIOMD0000000771)
Bajzer2008 - Modeling of canceBajzer2008 - Modeling of cancer virotherapy with recombinant measles viruses
|
pass[Bazjer2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000771#Files)
|FAIL|
pass[Bazjer2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000771#Files)
|FAIL|pass| -|
[BIOMD0000000772](https://www.ebi.ac.uk/biomodels/BIOMD0000000772)
Wang2019 - A mathematical modeWang2019 - A mathematical model of oncolytic virotherapy with time delay
|
pass[Wang2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000772#Files)
|pass|
pass[Wang2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000772#Files)
|FAIL|pass| -|
[BIOMD0000000773](https://www.ebi.ac.uk/biomodels/BIOMD0000000773)
Wodarz2018/2 - model with tranWodarz2018/2 - model with transit amplifying cells
|
pass[Wodarz2018:2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000773#Files)
|FAIL|
pass[Wodarz2018:2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000773#Files)
|FAIL|pass| -|[BIOMD0000000774](https://www.ebi.ac.uk/biomodels/BIOMD0000000774)
Wodarz2018/1 - simple model|
pass[Wodarz2018:1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000774#Files)
|FAIL|
pass[Wodarz2018:1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000774#Files)
|FAIL|pass| -|[BIOMD0000000775](https://www.ebi.ac.uk/biomodels/BIOMD0000000775)
Iarosz2015 - brain tumor|
pass[Iarosz2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000775#Files)
|FAIL|
pass[Iarosz2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000775#Files)
|FAIL|
CV_CONV_FAILURE```CVODE Error: CV_CONV_FAILURE: Convergence test failures occurred too many times (= MXNCF = 10) during one internal timestep or occurred with |h| = hmin.; In virtual double rr::CVODEIntegrator::integrate(double, double)```
| -|[BIOMD0000000776](https://www.ebi.ac.uk/biomodels/BIOMD0000000776)
Monro2008 - chemotherapy resistance|
pass[Monro2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000776#Files)
|FAIL|
pass[Monro2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000776#Files)
|FAIL|pass| -|
[BIOMD0000000777](https://www.ebi.ac.uk/biomodels/BIOMD0000000777)
Chakrabarty2010 - A control thChakrabarty2010 - A control theory approach to cancer remission aided by an optimal therapy
|
pass[Chakrabarty2010.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000777#Files)
|pass|
FAIL[Chakrabarty2010.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000777#Files)
|pass|
SEDMLfile```failed to validate SEDML file Chakrabarty2010.sedml```
| -|
[BIOMD0000000778](https://www.ebi.ac.uk/biomodels/BIOMD0000000778)
Wei2017 - tumor, T cell and cyWei2017 - tumor, T cell and cytokine interaction
|
pass[Wei2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000778#Files)
|FAIL|
pass[Wei2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000778#Files)
|FAIL|pass| -|
[BIOMD0000000779](https://www.ebi.ac.uk/biomodels/BIOMD0000000779)
dePillis2009 - Mathematical modePillis2009 - Mathematical model creation for cancer chemo-immunotherapy
|
pass[dePillis2009.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000779#Files)
|pass|
pass[dePillis2009.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000779#Files)
|FAIL|pass| -|
[BIOMD0000000780](https://www.ebi.ac.uk/biomodels/BIOMD0000000780)
Wang2016/1 - oncolytic efficacWang2016/1 - oncolytic efficacy of M1 virus-SNTM model
|
pass[Wang2016:1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000780#Files)
|FAIL|
pass[Wang2016:1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000780#Files)
|FAIL|pass| -|
[BIOMD0000000781](https://www.ebi.ac.uk/biomodels/BIOMD0000000781)
Wang2016/2 - oncolytic efficacWang2016/2 - oncolytic efficacy of M1 virus-SNT model
|
pass[Wang2016:2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000781#Files)
|FAIL|
pass[Wang2016:2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000781#Files)
|FAIL|pass| -|
[BIOMD0000000782](https://www.ebi.ac.uk/biomodels/BIOMD0000000782)
Wang2016/3 - oncolytic efficacWang2016/3 - oncolytic efficacy of M1 virus-SN model
|
pass[Wang2016:3.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000782#Files)
|FAIL|
pass[Wang2016:3.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000782#Files)
|FAIL|pass| -|
[BIOMD0000000783](https://www.ebi.ac.uk/biomodels/BIOMD0000000783)
Dong2014 - Mathematical modeliDong2014 - Mathematical modeling on helper t cells in a tumor immune system
|
pass[Dong2014.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000783#Files)
|FAIL|
pass[Dong2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000783#Files)
|FAIL|pass| -|
[BIOMD0000000784](https://www.ebi.ac.uk/biomodels/BIOMD0000000784)
Lopez2014 - A Validated MathemLopez2014 - A Validated Mathematical Model of Tumor Growth Including Tumor-Host Interaction and Cell-Mediated Immune Response
|
pass[Lopez2014.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000784#Files)
|FAIL|
pass[Lopez2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000784#Files)
|FAIL|pass| -|
[BIOMD0000000785](https://www.ebi.ac.uk/biomodels/BIOMD0000000785)
Sotolongo-Costa2003 - BehaviorSotolongo-Costa2003 - Behavior of tumors under nonstationary therapy
|
pass[Sotolongo-Costa2003.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000785#Files)
|FAIL|
pass[Sotolongo-Costa2003.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000785#Files)
|FAIL|pass| -|
[BIOMD0000000786](https://www.ebi.ac.uk/biomodels/BIOMD0000000786)
Lipniacki2004 - Mathematical mLipniacki2004 - Mathematical model of NFKB regulatory module
|
FAIL[Lipniacki2004.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000786#Files)
|FAIL|
pass[Lipniacki2004.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000786#Files)
|FAIL|pass| -|
[BIOMD0000000787](https://www.ebi.ac.uk/biomodels/BIOMD0000000787)
Frascoli2014 - A dynamical modFrascoli2014 - A dynamical model of tumour immunotherapy
|
pass[Frascoli2014.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000787#Files)
|FAIL|
pass[Frascoli2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000787#Files)
|FAIL|pass| -|
[BIOMD0000000788](https://www.ebi.ac.uk/biomodels/BIOMD0000000788)
Schropp2019 - Target-Mediated Schropp2019 - Target-Mediated Drug Disposition Model for Bispecific Antibodies
|
pass[Schropp2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000788#Files)
|FAIL|
pass[Schropp2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000788#Files)
|FAIL|pass| -|
[BIOMD0000000789](https://www.ebi.ac.uk/biomodels/BIOMD0000000789)
Jenner2018 - treatment of oncoJenner2018 - treatment of oncolytic virus
|
pass[Jenner2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000789#Files)
|FAIL|
pass[Jenner2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000789#Files)
|FAIL|pass| -|
[BIOMD0000000790](https://www.ebi.ac.uk/biomodels/BIOMD0000000790)
Alvarez2019 - A nonlinear mathAlvarez2019 - A nonlinear mathematical model of cell-mediated immune response for tumor phenotypic heterogeneity
|
pass[Alvarez2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000790#Files)
|pass|
pass[Alvarez2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000790#Files)
|FAIL|pass| -|[BIOMD0000000791](https://www.ebi.ac.uk/biomodels/BIOMD0000000791)
Wilson2012 - tumor vaccine efficacy|
pass[Wilson2012.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000791#Files)
|FAIL|
pass[Wilson2012.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000791#Files)
|FAIL|pass| -|
[BIOMD0000000792](https://www.ebi.ac.uk/biomodels/BIOMD0000000792)
Hu2019 - Modeling Pancreatic CHu2019 - Modeling Pancreatic Cancer Dynamics with Immunotherapy
|
pass[Hu2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000792#Files)
|pass|
pass[Hu2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000792#Files)
|FAIL|pass| -|
[BIOMD0000000793](https://www.ebi.ac.uk/biomodels/BIOMD0000000793)
Chen2011/1 - bone marrow invasChen2011/1 - bone marrow invasion absolute model
|
pass[Chen2011:1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000793#Files)
|FAIL|
MultipleSEDMLs['Chen2011:1swapped.sedml', 'Chen2011:1.sedml']
|NA|NA| -|
[BIOMD0000000794](https://www.ebi.ac.uk/biomodels/BIOMD0000000794)
Benary2019 - Controlling NFKB Benary2019 - Controlling NFKB dynamics by B-TrCP
|
FAIL[Benary2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000794#Files)
|FAIL|
pass[Benary2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000794#Files)
|FAIL|pass| -|
[BIOMD0000000795](https://www.ebi.ac.uk/biomodels/BIOMD0000000795)
Chen2011/2 - bone marrow invasChen2011/2 - bone marrow invasion relative model
|
pass[Chen2011:2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000795#Files)
|FAIL|
pass[Chen2011:2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000795#Files)
|FAIL|pass| -|
[BIOMD0000000796](https://www.ebi.ac.uk/biomodels/BIOMD0000000796)
Yang2012 - cancer growth with Yang2012 - cancer growth with angiogenesis
|
pass[Yang2012.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000796#Files)
|FAIL|
pass[Yang2012.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000796#Files)
|FAIL|pass| -|
[BIOMD0000000797](https://www.ebi.ac.uk/biomodels/BIOMD0000000797)
Hu2018 - Dynamics of tumor-CD4Hu2018 - Dynamics of tumor-CD4+-cytokine-host cells interactions with treatments
|
pass[Hu2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000797#Files)
|pass|
pass[Hu2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000797#Files)
|FAIL|pass| -|[BIOMD0000000798](https://www.ebi.ac.uk/biomodels/BIOMD0000000798)
Sharp2019 - AML|
pass[Sharp2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000798#Files)
|FAIL|
pass[Sharp2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000798#Files)
|FAIL|pass| -|
[BIOMD0000000799](https://www.ebi.ac.uk/biomodels/BIOMD0000000799)
Cucuianu2010 - A hypothetical-Cucuianu2010 - A hypothetical-mathematical model of acute myeloid leukaemia pathogenesis
|
pass[Cucuianu2010.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000799#Files)
|pass|
FAIL[Cucuianu2010.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000799#Files)
|pass|
SEDMLfile```failed to validate SEDML file Cucuianu2010.sedml```
| -|
[BIOMD0000000800](https://www.ebi.ac.uk/biomodels/BIOMD0000000800)
Precup2012 - Mathematical modePrecup2012 - Mathematical modeling of cell dynamics after allogeneic bone marrow transplantation
|
pass[Precup2012.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000800#Files)
|pass|
pass[Precup2012.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000800#Files)
|FAIL|pass| -|[BIOMD0000000801](https://www.ebi.ac.uk/biomodels/BIOMD0000000801)
Sturrock2015 - glioma growth|
pass[Sturrock2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000801#Files)
|FAIL|
pass[Sturrock2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000801#Files)
|FAIL|pass| -|[BIOMD0000000802](https://www.ebi.ac.uk/biomodels/BIOMD0000000802)
Hoffman2018- ADCC against cancer|
pass[Hoffman2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000802#Files)
|FAIL|
pass[Hoffman2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000802#Files)
|FAIL|pass| -|
[BIOMD0000000803](https://www.ebi.ac.uk/biomodels/BIOMD0000000803)
Park2019 - IL7 receptor signalPark2019 - IL7 receptor signaling in T cells
|
pass[Park2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000803#Files)
|pass|
pass[Park2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000803#Files)
|FAIL|pass| -|[BIOMD0000000804](https://www.ebi.ac.uk/biomodels/BIOMD0000000804)
Koenders2015 - multiple myeloma|
pass[Koenders2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000804#Files)
|FAIL|
pass[Koenders2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000804#Files)
|FAIL|pass| -|
[BIOMD0000000805](https://www.ebi.ac.uk/biomodels/BIOMD0000000805)
Al-Husari2013 - pH and lactateAl-Husari2013 - pH and lactate in tumor
|
pass[Al-Husari2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000805#Files)
|FAIL|
pass[Al-Husari2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000805#Files)
|FAIL|pass| -|[BIOMD0000000806](https://www.ebi.ac.uk/biomodels/BIOMD0000000806)
Eftimie2019-Macrophages Plasticity|
pass[model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000806#Files)
|FAIL|
MultipleSEDMLs['Macrophages Plasticity a.sedml', 'Macrophages Plasticity b.sedml']
|NA|NA| -|
[BIOMD0000000807](https://www.ebi.ac.uk/biomodels/BIOMD0000000807)
Fassoni2019 - Oncogenesis encoFassoni2019 - Oncogenesis encompassing mutations and genetic instability
|
pass[model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000807#Files)
|FAIL|
pass[Fassoni2019 - 5A.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000807#Files)
|pass|pass| -|
[BIOMD0000000808](https://www.ebi.ac.uk/biomodels/BIOMD0000000808)
Kronik2008 - Improving alloreaKronik2008 - Improving alloreactive CTL immunotherapy for malignant gliomas using a simulation model of their interactive dynamics
|
pass[Kronik2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000808#Files)
|pass|
pass[Kronik2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000808#Files)
|FAIL|pass| -|
[BIOMD0000000809](https://www.ebi.ac.uk/biomodels/BIOMD0000000809)
Malinzi2018 - tumour-immune inMalinzi2018 - tumour-immune interaction model
|
pass[Malinzi2018 - tumour-immune interaction model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000809#Files)
|pass|
FAIL[Malinzi2018 - tumour-immune interaction model.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000809#Files)
|pass|
SEDMLfile```failed to validate SEDML file Malinzi2018 - tumour-immune interaction model.sedml```
| -|
[BIOMD0000000810](https://www.ebi.ac.uk/biomodels/BIOMD0000000810)
Ganguli2018-immuno regulatory Ganguli2018-immuno regulatory mechanisms in tumor microenvironment
|
pass[Ganguli2018-immuno regulatory mechanisms in tumor microenvironment.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000810#Files)
|FAIL|
FAIL[Ganguli2018-immuno regulatory mechanisms in tumor microenvironment.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000810#Files)
|pass|
SEDMLfile```failed to validate SEDML file Ganguli2018-immuno regulatory mechanisms in tumor microenvironment.sedml```
| -|
[BIOMD0000000811](https://www.ebi.ac.uk/biomodels/BIOMD0000000811)
He2017 - A mathematical model He2017 - A mathematical model of pancreatic cancer with two kinds of treatments
|
pass[He2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000811#Files)
|pass|
pass[He2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000811#Files)
|FAIL|pass| -|
[BIOMD0000000812](https://www.ebi.ac.uk/biomodels/BIOMD0000000812)
Galante2012 - B7-H1 and a MathGalante2012 - B7-H1 and a Mathematical Model for Cytotoxic T Cell and Tumor Cell Interaction
|
pass[Galante2012.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000812#Files)
|pass|
pass[Galante2012.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000812#Files)
|FAIL|pass| -|
[BIOMD0000000813](https://www.ebi.ac.uk/biomodels/BIOMD0000000813)
Anderson2015 - Qualitative behAnderson2015 - Qualitative behavior of systems of tumor-CD4+-cytokine interactions with treatments
|
pass[Anderson2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000813#Files)
|pass|
pass[Anderson2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000813#Files)
|FAIL|pass| -|
[BIOMD0000000814](https://www.ebi.ac.uk/biomodels/BIOMD0000000814)
Perez-Garcia19 - ComputationalPerez-Garcia19 - Computational design of improved standardized chemotherapy protocols for grade 2 oligodendrogliomas
|
pass[Perez-Garcia19 Computational design of improved standardized chemotherapy protocols for grade 2 oligodendrogliomas.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000814#Files)
|FAIL|
FAIL[Perez-Garcia19 Computational design of improved standardized chemotherapy protocols for grade 2 oligodendrogliomas.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000814#Files)
|pass|
SEDMLfile```failed to validate SEDML file Perez-Garcia19 Computational design of improved standardized chemotherapy protocols for grade 2 oligodendrogliomas.sedml```
| -|
[BIOMD0000000815](https://www.ebi.ac.uk/biomodels/BIOMD0000000815)
Chrobak2011 - A mathematical mChrobak2011 - A mathematical model of induced cancer-adaptive immune system competition
|
pass[Chrobak2011.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000815#Files)
|pass|
pass[Chrobak2011.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000815#Files)
|FAIL|pass| -|
[BIOMD0000000816](https://www.ebi.ac.uk/biomodels/BIOMD0000000816)
Gevertz2018 - Cancer TreatmentGevertz2018 - Cancer Treatment with Oncolytic Viruses and Dendritic Cell injections original model
|
pass[model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000816#Files)
|pass|
MultipleSEDMLs['OVDC.sedml', 'OV25.sedml', 'OV5.sedml']
|NA|NA| -|
[BIOMD0000000817](https://www.ebi.ac.uk/biomodels/BIOMD0000000817)
Gevertz2018 - cancer treatmentGevertz2018 - cancer treatment with oncolytic viruses and dendritic cell injections minimal model
|
pass[model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000817#Files)
|pass|
MultipleSEDMLs['OV5.sedml', 'OV25.sedml', 'OVDC.sedml']
|NA|NA| -|
[BIOMD0000000818](https://www.ebi.ac.uk/biomodels/BIOMD0000000818)
Lee2008 - ERK and PI3K signal Lee2008 - ERK and PI3K signal integration by Myc
|
pass[Lee2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000818#Files)
|pass|
pass[Lee2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000818#Files)
|FAIL|pass| -|
[BIOMD0000000819](https://www.ebi.ac.uk/biomodels/BIOMD0000000819)
Nazari2018 - IL6 mediated stemNazari2018 - IL6 mediated stem cell driven tumor growth and targeted treatment
|
pass[Nazari2018 - IL6 mediated stem cell driven tumor growth and targeted treatment.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000819#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000820](https://www.ebi.ac.uk/biomodels/BIOMD0000000820)
West2019 - Cellular interactioWest2019 - Cellular interactions constrain tumor growth
|
pass[West2019 - Cellular interactions constrain tumor growth.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000820#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000821](https://www.ebi.ac.uk/biomodels/BIOMD0000000821)
Yazdjer2019 - reinforcement leYazdjer2019 - reinforcement learning-based control of tumor growth under anti-angiogenic therapy
|
pass[Yazdjer2019 - reinforcement learning-based control of tumor growth under anti-angiogenic therapy.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000821#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000822](https://www.ebi.ac.uk/biomodels/BIOMD0000000822)
Dorvash2019 - Dynamic modelingDorvash2019 - Dynamic modeling of signal transduction by mTOR complexes in cancer
|
pass[Dorvash2019 - Dynamic modeling of signal transduction by mTOR complexes in cancer.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000822#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000823](https://www.ebi.ac.uk/biomodels/BIOMD0000000823)
Varusai2018 - Dynamic modellinVarusai2018 - Dynamic modelling of the mTOR signalling network reveals complex emergent behaviours conferred by DEPTOR
|
pass[Varusai2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000823#Files)
|pass|
pass[Varusai2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000823#Files)
|FAIL|pass| -|
[BIOMD0000000824](https://www.ebi.ac.uk/biomodels/BIOMD0000000824)
Lewkiewics2019 - effects of agLewkiewics2019 - effects of aging on naive T cell populations and diversity
|
pass[Lewkiewics2019 - effects of aging on naive T cell populations and diversity.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000824#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000825](https://www.ebi.ac.uk/biomodels/BIOMD0000000825)
Greene2019 - Differentiate SpoGreene2019 - Differentiate Spontaneous and Induced Evolution to Drug Resistance During Cancer Treatment
|
pass[Greene2019 - Differentiate Spontaneous and Induced Evolution to Drug Resistance During Cancer Treatment.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000825#Files)
|pass|
FAIL[Greene2019 - Differentiate Spontaneous and Induced Evolution to Drug Resistance During Cancer Treatment.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000825#Files)
|pass|
SEDMLfile```failed to validate SEDML file Greene2019 - Differentiate Spontaneous and Induced Evolution to Drug Resistance During Cancer Treatment.sedml```
| -|
[BIOMD0000000826](https://www.ebi.ac.uk/biomodels/BIOMD0000000826)
Shin_2018_EGFR-PYK2-c-Met inteShin_2018_EGFR-PYK2-c-Met interaction network_model
|
pass[Shin2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000826#Files)
|pass|
pass[Shin2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000826#Files)
|FAIL|pass| -|
[BIOMD0000000827](https://www.ebi.ac.uk/biomodels/BIOMD0000000827)
Ito2019 - gefitnib resistance Ito2019 - gefitnib resistance of lung adenocarcinoma caused by MET amplification
|
pass[Ito2019 - gefitnib resistance of lung adenocarcinoma caused by MET amplification.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000827#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000828](https://www.ebi.ac.uk/biomodels/BIOMD0000000828)
Jung2019 - Regulating glioblasJung2019 - Regulating glioblastoma signaling pathways and anti-invasion therapy - core control model
|
pass[Jung2019 model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000828#Files)
|FAIL|
pass[Jung2019 simulation.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000828#Files)
|pass|pass| -|
[BIOMD0000000829](https://www.ebi.ac.uk/biomodels/BIOMD0000000829)
Jung2019 - egulating glioblastJung2019 - egulating glioblastoma signaling pathways and anti-invasion therapy cell cycle dynamics model
|
pass[Jung2019 - egulating glioblastoma signaling pathways and anti-invasion therapy cell cycle dynamics model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000829#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000000830](https://www.ebi.ac.uk/biomodels/BIOMD0000000830)
GiantsosAdams2013 - Growth of GiantsosAdams2013 - Growth of glycocalyx under static conditions
|
FAIL[Giantsos-Adams2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000830#Files)
|FAIL|
pass[Giantsos-Adams2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000830#Files)
|FAIL|pass| -|[BIOMD0000000831](https://www.ebi.ac.uk/biomodels/BIOMD0000000831)
Smith1980 - Hypothalamic Regulation|
pass[Smith1980_HypothalamicRegulation.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000831#Files)
|FAIL|
FAIL[Smith1980_HypothalamicRegulation.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000831#Files)
|pass|
SEDMLfile```failed to validate SEDML file Smith1980_HypothalamicRegulation.sedml```
| -|
[BIOMD0000000832](https://www.ebi.ac.uk/biomodels/BIOMD0000000832)
Shin2016 - Unveiling Hidden DyShin2016 - Unveiling Hidden Dynamics of Hippo Signalling
|
pass[Shin2016.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000832#Files)
|pass|
pass[Shin2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000832#Files)
|FAIL|pass| -|
[BIOMD0000000833](https://www.ebi.ac.uk/biomodels/BIOMD0000000833)
DiCamillo2016 - Insulin signalDiCamillo2016 - Insulin signalling pathway - Rule-based model
|
pass[DiCamillo2016.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000833#Files)
|pass|
pass[DiCamillo2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000833#Files)
|FAIL|pass| -|
[BIOMD0000000834](https://www.ebi.ac.uk/biomodels/BIOMD0000000834)
Verma2016 - Ca(2+) Signal PropVerma2016 - Ca(2+) Signal Propagation Along Hepatocyte Cords
|
pass[Verma2016.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000834#Files)
|pass|
pass[Verma2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000834#Files)
|FAIL|pass| -|
[BIOMD0000000835](https://www.ebi.ac.uk/biomodels/BIOMD0000000835)
Rao2014 - Fatty acid beta-oxidRao2014 - Fatty acid beta-oxidation (reduced model)
|
pass[Rao2014.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000835#Files)
|pass|
pass[Rao2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000835#Files)
|FAIL|pass| -|
[BIOMD0000000836](https://www.ebi.ac.uk/biomodels/BIOMD0000000836)
Radosavljevic2009_BioterroristRadosavljevic2009_BioterroristAttack_PanicProtection_1
|
pass[Radosavljevic2009.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000836#Files)
|pass|
pass[Radosavljevic2009.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000836#Files)
|FAIL|pass| -|
[BIOMD0000000837](https://www.ebi.ac.uk/biomodels/BIOMD0000000837)
Hanson2016 - Toxicity ManagemeHanson2016 - Toxicity Management in CAR T cell therapy for B-ALL
|
pass[Hanson2016.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000837#Files)
|FAIL|
pass[Hanson2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000837#Files)
|FAIL|pass| -|
[BIOMD0000000838](https://www.ebi.ac.uk/biomodels/BIOMD0000000838)
Tsur2019 - Response of patientTsur2019 - Response of patients with melanoma to immune checkpoint blockade
|
pass[Tsur2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000838#Files)
|pass|
pass[Tsur2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000838#Files)
|FAIL|pass| -|
[BIOMD0000000839](https://www.ebi.ac.uk/biomodels/BIOMD0000000839)
Almeida2019 - Transcription-baAlmeida2019 - Transcription-based circadian mechanism controls the duration of molecular clock states in response to signaling inputs
|
pass[Almeida2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000839#Files)
|pass|
pass[Almeida2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000839#Files)
|FAIL|pass| -|
[BIOMD0000000840](https://www.ebi.ac.uk/biomodels/BIOMD0000000840)
Caldwell2019 - The Vicodin abuCaldwell2019 - The Vicodin abuse problem
|
pass[Caldwell2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000840#Files)
|pass|
pass[Caldwell2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000840#Files)
|FAIL|pass| -|
[BIOMD0000000841](https://www.ebi.ac.uk/biomodels/BIOMD0000000841)
Dhawan2019 - Endogenous miRNA Dhawan2019 - Endogenous miRNA sponges mediate the generation of oscillatory dynamics for a non-coding RNA network
|
pass[Dhawan2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000841#Files)
|pass|NoSEDML|NA|NA| -|[BIOMD0000000842](https://www.ebi.ac.uk/biomodels/BIOMD0000000842)
Heitzler2012 - GPCR signalling|
pass[MODEL1012080000.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000842#Files)
|pass|
pass[MODEL1012080000.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000842#Files)
|FAIL|pass| -|
[BIOMD0000000843](https://www.ebi.ac.uk/biomodels/BIOMD0000000843)
Dudziuk2019 - Biologically souDudziuk2019 - Biologically sound formal model of Hsp70 heat induction
|
pass[Dudziuk2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000843#Files)
|pass|
pass[Dudziuk2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000843#Files)
|FAIL|pass| -|
[BIOMD0000000844](https://www.ebi.ac.uk/biomodels/BIOMD0000000844)
Viertel2019 - A Computational Viertel2019 - A Computational model of the mammalian external tufted cell
|
pass[Viertel2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000844#Files)
|pass|
pass[Viertel2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000844#Files)
|FAIL|pass| -|
[BIOMD0000000845](https://www.ebi.ac.uk/biomodels/BIOMD0000000845)
Gulbudak2019.1 - HeterogeneousGulbudak2019.1 - Heterogeneous viral strategies promote coexistence in virus-microbe systems (Lytic)
|
pass[Gulbudak2019.1.Lytic.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000845#Files)
|pass|
pass[Gulbudak2019.1.Lytic.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000845#Files)
|FAIL|pass| -|
[BIOMD0000000846](https://www.ebi.ac.uk/biomodels/BIOMD0000000846)
Gulbudak2019.2 - HeterogeneousGulbudak2019.2 - Heterogeneous viral strategies promote coexistence in virus-microbe systems (Chronic)
|
pass[Gulbudak2019.2.Chronic.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000846#Files)
|pass|
FAIL[Gulbudak2019.2.Chronic.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000846#Files)
|pass|
SEDMLfile```failed to validate SEDML file Gulbudak2019.2.Chronic.sedml```
| -|
[BIOMD0000000847](https://www.ebi.ac.uk/biomodels/BIOMD0000000847)
Adams2019 - The regulatory rolAdams2019 - The regulatory role of shikimate in plant phenylalanine metabolism
|
pass[Adams2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000847#Files)
|pass|
pass[Adams2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000847#Files)
|FAIL|pass| -|
[BIOMD0000000848](https://www.ebi.ac.uk/biomodels/BIOMD0000000848)
FatehiChenar2018 - MathematicaFatehiChenar2018 - Mathematical model of immune response to hepatitis B
|
pass[FatehiChenar2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000848#Files)
|pass|
pass[FatehiChenar2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000848#Files)
|FAIL|pass| -|
[BIOMD0000000849](https://www.ebi.ac.uk/biomodels/BIOMD0000000849)
Potassium balance in lactatingPotassium balance in lactating and non-lactating dairy cows
|
FAIL[Berg2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000849#Files)
|FAIL|
pass[Berg2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000849#Files)
|FAIL|pass| -|
[BIOMD0000000850](https://www.ebi.ac.uk/biomodels/BIOMD0000000850)
Jenner2019 - Oncolytic virotheJenner2019 - Oncolytic virotherapy for tumours following a Gompertz growth law
|
pass[Jenner2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000850#Files)
|FAIL|
pass[Jenner2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000850#Files)
|FAIL|pass| -|
[BIOMD0000000851](https://www.ebi.ac.uk/biomodels/BIOMD0000000851)
Ho2019 - Mathematical models oHo2019 - Mathematical models of transmission dynamics and vaccine strategies in Hong Kong during the 2017-2018 winter influenza season (Simple)
|
pass[Ho2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000851#Files)
|pass|
pass[Ho2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000851#Files)
|FAIL|pass| -|
[BIOMD0000000852](https://www.ebi.ac.uk/biomodels/BIOMD0000000852)
Andersen2017 - Mathematical moAndersen2017 - Mathematical modelling as a proof of concept for MPNs as a human inflammation model for cancer development
|
pass[Andersen2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000852#Files)
|pass|
pass[Andersen2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000852#Files)
|FAIL|pass| -|
[BIOMD0000000853](https://www.ebi.ac.uk/biomodels/BIOMD0000000853)
Smolen2018 - Paradoxical LTP mSmolen2018 - Paradoxical LTP maintenance with inhibition of protein synthesis and the proteasome
|
pass[Smolen2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000853#Files)
|pass|
pass[Smolen2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000853#Files)
|FAIL|pass| -|[BIOMD0000000854](https://www.ebi.ac.uk/biomodels/BIOMD0000000854)
Gray2016 - The Akt switch model|
pass[Gray2016.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000854#Files)
|pass|
pass[Gray2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000854#Files)
|FAIL|pass| -|
[BIOMD0000000855](https://www.ebi.ac.uk/biomodels/BIOMD0000000855)
Cooper2015 - Modeling the effeCooper2015 - Modeling the effects of systemic mediators on the inflammatory phase of wound healing
|
pass[Cooper2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000855#Files)
|pass|
pass[Cooper2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000855#Files)
|FAIL|pass| -|
[BIOMD0000000856](https://www.ebi.ac.uk/biomodels/BIOMD0000000856)
Budding yeast size control by Budding yeast size control by titration of nuclear sites
|
pass[Heldt2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000856#Files)
|FAIL|
pass[Heldt2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000856#Files)
|FAIL|pass| -|
[BIOMD0000000857](https://www.ebi.ac.uk/biomodels/BIOMD0000000857)
Larbat2016.1 - Modeling the diLarbat2016.1 - Modeling the diversion of primary carbon flux into secondary metabolism under variable nitrate and light or dark conditions (Base Model)
|
pass[Larbat2016.1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000857#Files)
|pass|
pass[Larbat2016.1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000857#Files)
|FAIL|pass| -|
[BIOMD0000000858](https://www.ebi.ac.uk/biomodels/BIOMD0000000858)
Larbat2016.2 - Modeling the diLarbat2016.2 - Modeling the diversion of primary carbon flux into secondary metabolism under variable nitrate and light or dark conditions (Light Dark Cycles)
|
pass[Larbat2016.2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000858#Files)
|pass|
FAIL[Larbat2016.2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000858#Files)
|pass|
SEDMLfile```failed to validate SEDML file Larbat2016.2.sedml```
| -|
[BIOMD0000000859](https://www.ebi.ac.uk/biomodels/BIOMD0000000859)
Larbat2016.3 - Modeling the diLarbat2016.3 - Modeling the diversion of primary carbon flux into secondary metabolism under variable nitrate and light or dark conditions (Light Dark Cycles with Minimum Starch Adaption)
|
pass[Larbat2016.3.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000859#Files)
|pass|
FAIL[Larbat2016.3.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000859#Files)
|pass|
SEDMLfile```failed to validate SEDML file Larbat2016.3.sedml```
| -|
[BIOMD0000000860](https://www.ebi.ac.uk/biomodels/BIOMD0000000860)
Proctor2017- Role of microRNAsProctor2017- Role of microRNAs in osteoarthritis (Positive Feedforward Incoherent By MicroRNA)_1
|
pass[proctor2017_model4.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000860#Files)
|FAIL|
pass[proctor2017_model4.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000860#Files)
|FAIL|pass| -|
[BIOMD0000000861](https://www.ebi.ac.uk/biomodels/BIOMD0000000861)
Bachmann2011 - Division of labBachmann2011 - Division of labor by dual feedback regulators controls JAK2/STAT5 signaling over broad ligand range
|
pass[Bachmann2011.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000861#Files)
|pass|
pass[Bachmann2011.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000861#Files)
|FAIL|pass| -|
[BIOMD0000000862](https://www.ebi.ac.uk/biomodels/BIOMD0000000862)
Proctor2017- Role of microRNAsProctor2017- Role of microRNAs in osteoarthritis (Positive Feedback By Micro RNA)
|
pass[Proctor2017_model0.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000862#Files)
|pass|
pass[Proctor2017_model0.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000862#Files)
|FAIL|pass| -|
[BIOMD0000000863](https://www.ebi.ac.uk/biomodels/BIOMD0000000863)
Kosinsky2018 - Radiation and PKosinsky2018 - Radiation and PD-(L)1 treatment combinations
|
pass[Kosinsky2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000863#Files)
|FAIL|
pass[Kosinsky2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000863#Files)
|FAIL|pass| -|
[BIOMD0000000864](https://www.ebi.ac.uk/biomodels/BIOMD0000000864)
Proctor2017- Role of microRNAsProctor2017- Role of microRNAs in osteoarthritis (Negative Feedback By MicroRNA)
|
pass[Proctor2017_model1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000864#Files)
|pass|
pass[Proctor2017_model1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000864#Files)
|FAIL|pass| -|
[BIOMD0000000865](https://www.ebi.ac.uk/biomodels/BIOMD0000000865)
Nikolaev2019 - ImmunobiochemicNikolaev2019 - Immunobiochemical reconstruction of influenza lung infection-melanoma skin cancer interactions
|
pass[Nikolaev2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000865#Files)
|pass|
pass[Nikolaev2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000865#Files)
|FAIL|pass| -|
[BIOMD0000000866](https://www.ebi.ac.uk/biomodels/BIOMD0000000866)
Simon2019 - NIK-dependent p100Simon2019 - NIK-dependent p100 processing into p52, Michaelis-Menten, SBML 2v4
|
pass[Simon2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000866#Files)
|pass|
pass[Simon2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000866#Files)
|FAIL|pass| -|
[BIOMD0000000867](https://www.ebi.ac.uk/biomodels/BIOMD0000000867)
Coulibaly2019 - Interleukin-15Coulibaly2019 - Interleukin-15 Signaling in HIF-1a Regulation in Natural Killer Cells
|
pass[Coulibaly2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000867#Files)
|pass|
pass[Coulibaly2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000867#Files)
|FAIL|pass| -|
[BIOMD0000000868](https://www.ebi.ac.uk/biomodels/BIOMD0000000868)
Simon2019 - NIK-dependent p100Simon2019 - NIK-dependent p100 processing into p52, Mass Action, SBML 2v4
|
pass[simon2019_model2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000868#Files)
|pass|
pass[simon2019_model2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000868#Files)
|FAIL|pass| -|
[BIOMD0000000869](https://www.ebi.ac.uk/biomodels/BIOMD0000000869)
Simon2019 - NIK-dependent p100Simon2019 - NIK-dependent p100 processing into p52 and IkBd degradation, Michaelis-Menten, SBML 2v4
|
pass[Simon2019_model3.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000869#Files)
|pass|
pass[Simon2019_model3.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000869#Files)
|FAIL|pass| -|
[BIOMD0000000870](https://www.ebi.ac.uk/biomodels/BIOMD0000000870)
Simon2019 - NIK-dependent p100Simon2019 - NIK-dependent p100 processing into p52 and IkBd degradation, mass action, SBML 2v4
|
pass[Simon2019_model4.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000870#Files)
|pass|
FAIL[Simon2019_model4.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000870#Files)
|pass|
SEDMLfile```failed to validate SEDML file Simon2019_model4.sedml```
| -|
[BIOMD0000000871](https://www.ebi.ac.uk/biomodels/BIOMD0000000871)
NIK-dependent p100 processing NIK-dependent p100 processing into p52 with RelB binding and IkBd degradation, mass action, SBML 2v4
|
pass[Simon2019_Figure3b.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000871#Files)
|pass|
pass[Simon2019_Figure3b.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000871#Files)
|FAIL|pass| -|
[BIOMD0000000872](https://www.ebi.ac.uk/biomodels/BIOMD0000000872)
Verma2016 - HIV and HPV co-infVerma2016 - HIV and HPV co-infection, T-cell response
|
FAIL[verma2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000872#Files)
|FAIL|
pass[verma2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000872#Files)
|FAIL|pass| -|
[BIOMD0000000873](https://www.ebi.ac.uk/biomodels/BIOMD0000000873)
Soni2018 - IL6 induced M2 PhenSoni2018 - IL6 induced M2 Phenotype in Leishmania major infected macrophage
|
pass[Soni2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000873#Files)
|FAIL|
pass[Soni2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000873#Files)
|FAIL|pass| -|
[BIOMD0000000874](https://www.ebi.ac.uk/biomodels/BIOMD0000000874)
Perelson1993 - HIVinfection_CDPerelson1993 - HIVinfection_CD4Tcells_ModelA
|
pass[Perelson1993.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000874#Files)
|pass|
pass[Perelson1993.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000874#Files)
|FAIL|pass| -|[BIOMD0000000875](https://www.ebi.ac.uk/biomodels/BIOMD0000000875)
Nelson2000- HIV-1 general model 1|
pass[Nelson2000.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000875#Files)
|FAIL|
pass[Nelson2000.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000875#Files)
|FAIL|pass| -|
[BIOMD0000000876](https://www.ebi.ac.uk/biomodels/BIOMD0000000876)
Aavani2019 - The role of CD4 TAavani2019 - The role of CD4 T cells in immune system activation and viral reproduction in a simple model for HIV infection
|
pass[Aavani2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000876#Files)
|pass|
pass[Aavani2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000876#Files)
|FAIL|pass| -|
[BIOMD0000000877](https://www.ebi.ac.uk/biomodels/BIOMD0000000877)
Ontah2019 - Dynamic analysis oOntah2019 - Dynamic analysis of a tumor treatment model using oncolytic virus and chemotherapy with saturated infection rate
|
pass[Ontah2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000877#Files)
|pass|
pass[Ontah2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000877#Files)
|FAIL|pass| -|[BIOMD0000000878](https://www.ebi.ac.uk/biomodels/BIOMD0000000878)
Lenbury2001_InsulinKineticsModel_A|
pass[Lenbury2001.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000878#Files)
|pass|
pass[Lenbury2001.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000878#Files)
|FAIL|
CV_TOO_MUCH_WORK```CVODE Error: CV_TOO_MUCH_WORK: The solver took mxstep (20000) internal steps but could not reach tout.; In virtual double rr::CVODEIntegrator::integrate(double, double)```
| -|
[BIOMD0000000879](https://www.ebi.ac.uk/biomodels/BIOMD0000000879)
Rodrigues2019 - A mathematicalRodrigues2019 - A mathematical model for chemoimmunotherapy of chronic lymphocytic leukemia
|
pass[Rodrigues2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000879#Files)
|pass|
pass[Rodrigues2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000879#Files)
|FAIL|pass| -|
[BIOMD0000000880](https://www.ebi.ac.uk/biomodels/BIOMD0000000880)
Trisilowati2018 - Optimal contTrisilowati2018 - Optimal control of tumor-immune system interaction with treatment
|
pass[Trisilowati2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000880#Files)
|pass|
pass[Trisilowati2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000880#Files)
|FAIL|pass| -|
[BIOMD0000000881](https://www.ebi.ac.uk/biomodels/BIOMD0000000881)
Kogan2013 - A mathematical modKogan2013 - A mathematical model for the immunotherapeutic control of the TH1 TH2 imbalance in melanoma
|
pass[Kogan2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000881#Files)
|pass|
pass[Kogan2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000881#Files)
|FAIL|pass| -|[BIOMD0000000882](https://www.ebi.ac.uk/biomodels/BIOMD0000000882)
Munz2009 - Zombie SIZRC|
pass[munz2000.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000882#Files)
|pass|
pass[munz2000.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000882#Files)
|FAIL|pass| -|
[BIOMD0000000883](https://www.ebi.ac.uk/biomodels/BIOMD0000000883)
Giani2019 - Computational modeGiani2019 - Computational modeling to predict MAP3K8 effects as mediator of resistance to vemurafenib in thyroid cancer stem cells
|
pass[Giani2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000883#Files)
|pass|
pass[Giani2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000883#Files)
|FAIL|pass| -|
[BIOMD0000000884](https://www.ebi.ac.uk/biomodels/BIOMD0000000884)
Cortes2019 - Optimality of theCortes2019 - Optimality of the spontaneous prophage induction rate.
|
pass[Cortes2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000884#Files)
|pass|
FAIL[Cortes2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000884#Files)
|pass|
SEDMLfile```failed to validate SEDML file Cortes2019.sedml```
| -|
[BIOMD0000000885](https://www.ebi.ac.uk/biomodels/BIOMD0000000885)
Sumana2018 - Mathematical modeSumana2018 - Mathematical modeling of cancer-immune system, considering the role of antibodies.
|
pass[Sumana2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000885#Files)
|pass|
pass[Sumana2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000885#Files)
|FAIL|pass| -|
[BIOMD0000000886](https://www.ebi.ac.uk/biomodels/BIOMD0000000886)
Dubey2008 - Modeling the interDubey2008 - Modeling the interaction between avascular cancerous cells and acquired immune response
|
pass[Dubey2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000886#Files)
|pass|
pass[Dubey2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000886#Files)
|FAIL|pass| -|
[BIOMD0000000887](https://www.ebi.ac.uk/biomodels/BIOMD0000000887)
Lim2014 - HTLV-I infection A dLim2014 - HTLV-I infection A dynamic struggle between viral persistence and host immunity
|
pass[Lim2014.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000887#Files)
|pass|
pass[Lim2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000887#Files)
|FAIL|pass| -|
[BIOMD0000000888](https://www.ebi.ac.uk/biomodels/BIOMD0000000888)
Unni2019 - Mathematical ModeliUnni2019 - Mathematical Modeling, Analysis, and Simulation of Tumor Dynamics with Drug Interventions
|
pass[unni2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000888#Files)
|pass|
pass[unni2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000888#Files)
|FAIL|pass| -|
[BIOMD0000000889](https://www.ebi.ac.uk/biomodels/BIOMD0000000889)
Fribourg2014 - Model of influeFribourg2014 - Model of influenza A virus infection dynamics of viral antagonism and innate immune response.
|
pass[Fribourg2014.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000889#Files)
|pass|
pass[Fribourg2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000889#Files)
|FAIL|pass| -|
[BIOMD0000000890](https://www.ebi.ac.uk/biomodels/BIOMD0000000890)
Bhattacharya2014 - A mathematiBhattacharya2014 - A mathematical model of the sterol regulatory element binding protein 2 cholesterol biosynthesis pathway
|
pass[Bhattacharya2014.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000890#Files)
|FAIL|
pass[Bhattacharya2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000890#Files)
|FAIL|pass| -|
[BIOMD0000000891](https://www.ebi.ac.uk/biomodels/BIOMD0000000891)
Khajanchi2019 - Stability AnalKhajanchi2019 - Stability Analysis of a Mathematical Model forGlioma-Immune Interaction under OptimalTherapy
|
pass[Khajanchi2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000891#Files)
|pass|
pass[Khajanchi2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000891#Files)
|FAIL|pass| -|
[BIOMD0000000892](https://www.ebi.ac.uk/biomodels/BIOMD0000000892)
Sandip2013 - Modeling the dynaSandip2013 - Modeling the dynamics of hepatitis C virus with combined antiviral drug therapy: interferon and ribavirin.
|
pass[Sandip2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000892#Files)
|pass|
pass[Sandip2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000892#Files)
|FAIL|pass| -|
[BIOMD0000000893](https://www.ebi.ac.uk/biomodels/BIOMD0000000893)
GonzalezMiranda2013 - The effeGonzalezMiranda2013 - The effect of circadian oscillations on biochemical cell signaling by NF-κB
|
pass[GonzalezMiranda2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000893#Files)
|FAIL|
pass[GonzalezMiranda2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000893#Files)
|FAIL|pass| -|
[BIOMD0000000894](https://www.ebi.ac.uk/biomodels/BIOMD0000000894)
Bose2011 - Noise-assisted inteBose2011 - Noise-assisted interactions of tumor and immune cells
|
pass[Bose2011.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000894#Files)
|FAIL|
pass[Bose2011.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000894#Files)
|FAIL|pass| -|
[BIOMD0000000895](https://www.ebi.ac.uk/biomodels/BIOMD0000000895)
Schokker2013 - A mathematical Schokker2013 - A mathematical model representing cellular immune development and response to Salmonella of chicken intestinal tissue
|
pass[Schokker2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000895#Files)
|FAIL|
pass[Schokker2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000895#Files)
|FAIL|pass| -|
[BIOMD0000000896](https://www.ebi.ac.uk/biomodels/BIOMD0000000896)
Szymanska2009 - Mathematical mSzymanska2009 - Mathematical modeling of heat shock protein synthesis in response to temperature change
|
pass[Szymanska2009.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000896#Files)
|pass|
pass[Szymanska2009.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000896#Files)
|FAIL|pass| -|
[BIOMD0000000897](https://www.ebi.ac.uk/biomodels/BIOMD0000000897)
Khajanchi2015 - The combined eKhajanchi2015 - The combined effects of optimal control in cancer remission
|
pass[Khajanchi2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000897#Files)
|pass|
FAIL[Khajanchi2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000897#Files)
|pass|
SEDMLfile```failed to validate SEDML file Khajanchi2015.sedml```
| -|
[BIOMD0000000898](https://www.ebi.ac.uk/biomodels/BIOMD0000000898)
Jiao2018 - Feedback regulationJiao2018 - Feedback regulation in a stem cell model with acute myeloid leukaemia
|
pass[Jiao2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000898#Files)
|pass|
pass[Jiao2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000898#Files)
|FAIL|pass| -|
[BIOMD0000000899](https://www.ebi.ac.uk/biomodels/BIOMD0000000899)
Ota2015 - Positive regulation Ota2015 - Positive regulation of Rho GTPase activity by RhoGDIs as a result of their direct interaction with GAPs (GDI integrated)
|
FAIL[Ota2015_GDI-integrated.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000899#Files)
|FAIL|
pass[Ota2015_GDI-integrated.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000899#Files)
|FAIL|pass| -|
[BIOMD0000000900](https://www.ebi.ac.uk/biomodels/BIOMD0000000900)
Bianca2013 - Persistence analyBianca2013 - Persistence analysis in a Kolmogorov-type model for cancer-immune system competition
|
pass[Bianca2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000900#Files)
|pass|
pass[Bianca2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000900#Files)
|FAIL|pass| -|
[BIOMD0000000901](https://www.ebi.ac.uk/biomodels/BIOMD0000000901)
ChowHall2008 Dynamics of HumanChowHall2008 Dynamics of Human Weight Change_ODE_1
|
pass[ChowHall2008 - Dynamics of Human Weight Change.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000901#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000902](https://www.ebi.ac.uk/biomodels/BIOMD0000000902)
Wang2019 - A mathematical modeWang2019 - A mathematical model of oncolytic virotherapy with time delay
|
pass[Wang2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000902#Files)
|pass|
pass[Wang2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000902#Files)
|FAIL|pass| -|
[BIOMD0000000903](https://www.ebi.ac.uk/biomodels/BIOMD0000000903)
Solis-perez2019 - A fractionalSolis-perez2019 - A fractional mathematical model of breast cancer competition model
|
pass[Solis-perez2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000903#Files)
|pass|
pass[Solis-perez2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000903#Files)
|FAIL|pass| -|
[BIOMD0000000904](https://www.ebi.ac.uk/biomodels/BIOMD0000000904)
Admon2017 - Modelling tumor grAdmon2017 - Modelling tumor growth with immune response and drug using ordinary differential equations
|
pass[Admon2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000904#Files)
|pass|
pass[Admon2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000904#Files)
|FAIL|pass| -|
[BIOMD0000000905](https://www.ebi.ac.uk/biomodels/BIOMD0000000905)
Dubey2007 - A mathematical modDubey2007 - A mathematical model for the effect of toxicant on the immune system (with toxicant effect) Model2
|
pass[Dubey2007_model2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000905#Files)
|pass|
pass[Dubey2007_model2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000905#Files)
|FAIL|pass| -|
[BIOMD0000000906](https://www.ebi.ac.uk/biomodels/BIOMD0000000906)
Dubey2007 - A mathematical modDubey2007 - A mathematical model for the effect of toxicant on the immune system (without toxicant effect) Model1
|
pass[Dubey2007_model1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000906#Files)
|pass|
pass[Dubey2007_model1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000906#Files)
|FAIL|pass| -|
[BIOMD0000000907](https://www.ebi.ac.uk/biomodels/BIOMD0000000907)
HeberleRazquinNavas2019 - The HeberleRazquinNavas2019 - The PI3K and MAPK/p38 pathways control stress granuleassembly in a hierarchical manner model 3
|
pass[Navas2019_model3.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000907#Files)
|FAIL|
pass[Navas2019_model3.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000907#Files)
|FAIL|pass| -|
[BIOMD0000000908](https://www.ebi.ac.uk/biomodels/BIOMD0000000908)
dePillis2013 - Mathematical modePillis2013 - Mathematical modeling of regulatory T cell effects on renal cell carcinoma treatment
|
pass[dePillis2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000908#Files)
|pass|
pass[dePillis2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000908#Files)
|FAIL|pass| -|
[BIOMD0000000909](https://www.ebi.ac.uk/biomodels/BIOMD0000000909)
dePillis2003 - The dynamics ofdePillis2003 - The dynamics of an optimally controlled tumor model: A case study
|
pass[dePillis2003.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000909#Files)
|FAIL|
pass[dePillis2003.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000909#Files)
|FAIL|pass| -|
[BIOMD0000000910](https://www.ebi.ac.uk/biomodels/BIOMD0000000910)
Isaeva2008 - Modelling of AntiIsaeva2008 - Modelling of Anti-Tumour Immune Response Immunocorrective Effect of Weak Centimetre Electromagnetic Waves
|
pass[Isaeva2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000910#Files)
|pass|
pass[Isaeva2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000910#Files)
|FAIL|pass| -|
[BIOMD0000000911](https://www.ebi.ac.uk/biomodels/BIOMD0000000911)
Merola2008 - An insight into tMerola2008 - An insight into tumor dormancy equilibrium via the analysis of its domain of attraction
|
pass[Merola2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000911#Files)
|pass|
pass[Merola2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000911#Files)
|FAIL|pass| -|
[BIOMD0000000912](https://www.ebi.ac.uk/biomodels/BIOMD0000000912)
Caravagna2010 - Tumour suppresCaravagna2010 - Tumour suppression by immune system
|
pass[Caravagna2010.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000912#Files)
|pass|
FAIL[Caravagna2010.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000912#Files)
|pass|
SEDMLfile```failed to validate SEDML file Caravagna2010.sedml```
| -|
[BIOMD0000000913](https://www.ebi.ac.uk/biomodels/BIOMD0000000913)
dePillis2008 - Optimal controldePillis2008 - Optimal control of mixed immunotherapy and chemotherapy of tumors
|
pass[dePillis2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000913#Files)
|pass|
pass[dePillis2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000913#Files)
|FAIL|pass| -|
[BIOMD0000000914](https://www.ebi.ac.uk/biomodels/BIOMD0000000914)
Parra_Guillen2013 - MathematiParra_Guillen2013 - Mathematical model approach to describe tumour response in mice after vaccine administration_model1
|
pass[Parra_Guillen2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000914#Files)
|FAIL|
pass[Parra_Guillen2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000914#Files)
|FAIL|pass| -|
[BIOMD0000000915](https://www.ebi.ac.uk/biomodels/BIOMD0000000915)
Sun2018 - Instantaneous mutatiSun2018 - Instantaneous mutation rate in cancer initiation and progression
|
pass[Sun2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000915#Files)
|pass|
pass[Sun2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000915#Files)
|FAIL|pass| -|
[BIOMD0000000916](https://www.ebi.ac.uk/biomodels/BIOMD0000000916)
Kraan199_Kinetics of Cortisol Kraan199_Kinetics of Cortisol Metabolism and Excretion.
|
pass[Kraan1992.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000916#Files)
|pass|
pass[Kraan1992.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000916#Files)
|FAIL|pass| -|
[BIOMD0000000917](https://www.ebi.ac.uk/biomodels/BIOMD0000000917)
Phillips2007_AscendingArousalSPhillips2007_AscendingArousalSystem_SleepWakeDynamics
|
pass[Phillips2007_Curated.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000917#Files)
|pass|
FAIL[Phillips2007.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000917#Files)
|pass|
SEDMLfile```failed to validate SEDML file Phillips2007.sedml```
| -|
[BIOMD0000000918](https://www.ebi.ac.uk/biomodels/BIOMD0000000918)
Schwarz2018-Cdk Activity ThresSchwarz2018-Cdk Activity Threshold Determines Passage through the Restriction Point
|
pass[Schwarz2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000918#Files)
|pass|
FAIL[Schwarz2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000918#Files)
|pass|
SEDMLfile```failed to validate SEDML file Schwarz2018.sedml```
| -|
[BIOMD0000000919](https://www.ebi.ac.uk/biomodels/BIOMD0000000919)
Ledzewicz2013 - On optimal cheLedzewicz2013 - On optimal chemotherapy with a strongly targeted agent for a model of tumor immune system interactions with generalized logistic growth
|
pass[Ledzewicz2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000919#Files)
|pass|
FAIL[Ledzewicz2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000919#Files)
|pass|
SEDMLfile```failed to validate SEDML file Ledzewicz2013.sedml```
| -|
[BIOMD0000000920](https://www.ebi.ac.uk/biomodels/BIOMD0000000920)
Jarrett2015 - Modelling the inJarrett2015 - Modelling the interaction between immune response, bacterial dynamics and inflammatory damage
|
pass[Jarrett2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000920#Files)
|pass|
pass[Jarrett2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000920#Files)
|FAIL|pass| -|
[BIOMD0000000921](https://www.ebi.ac.uk/biomodels/BIOMD0000000921)
Khajanchi2017 - Uniform PersisKhajanchi2017 - Uniform Persistence and Global Stability for a Brain Tumor and Immune System Interaction
|
pass[khajanchi2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000921#Files)
|pass|
pass[khajanchi2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000921#Files)
|FAIL|pass| -|[BIOMD0000000922](https://www.ebi.ac.uk/biomodels/BIOMD0000000922)
Turner2015-Human/Mosquito ELP Model|
pass[Turner2015_ELP.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000922#Files)
|pass|
FAIL[Turner2015_ELP.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000922#Files)
|pass|
SEDMLfile```failed to validate SEDML file Turner2015_ELP.sedml```
| -|
[BIOMD0000000923](https://www.ebi.ac.uk/biomodels/BIOMD0000000923)
Liò2012_Modelling osteomyelitiLiò2012_Modelling osteomyelitis_Control Model
|
pass[Liò2012_Modelling osteomyelitis_Control Model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000923#Files)
|FAIL|
pass[Liò2012_Modelling osteomyelitis_Control Model.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000923#Files)
|FAIL|pass| -|
[BIOMD0000000924](https://www.ebi.ac.uk/biomodels/BIOMD0000000924)
Smith2011 - Three Stage InnateSmith2011 - Three Stage Innate Immune Response to a Pneumococcal Lung Infection
|
pass[Smith2011_V1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000924#Files)
|pass|
MultipleSEDMLs['Smith2011_V1.sedml', 'Smith2011_V1_Fig5.sedml']
|NA|NA| -|
[BIOMD0000000925](https://www.ebi.ac.uk/biomodels/BIOMD0000000925)
Dunster2016 - Nondimensional CDunster2016 - Nondimensional Coagulation Model
|
FAIL[Dunster2016_Nondimensional_Model_Curated.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000925#Files)
|FAIL|
pass[Dunster2016_Nondimensional_Model1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000925#Files)
|FAIL|
NoSBMLelement```No sbml element exists for concentration selection '[FactorXa]'```
| -|
[BIOMD0000000926](https://www.ebi.ac.uk/biomodels/BIOMD0000000926)
Rhodes2019 - Immune-Mediated tRhodes2019 - Immune-Mediated theory of Metastasis
|
pass[Rhodes2019-Immune-Mediated theory of Metastasis_V1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000926#Files)
|FAIL|
pass[Rhodes2019-Immune-Mediated theory of Metastasis_V1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000926#Files)
|FAIL|pass| -|
[BIOMD0000000927](https://www.ebi.ac.uk/biomodels/BIOMD0000000927)
Grigolon2018-Responses to auxiGrigolon2018-Responses to auxin signals
|
pass[Grigolon2018_fig1b.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000927#Files)
|pass|
pass[Grigolon2018_fig1b.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000927#Files)
|FAIL|pass| -|
[BIOMD0000000928](https://www.ebi.ac.uk/biomodels/BIOMD0000000928)
Baker2017 - The role of cytokiBaker2017 - The role of cytokines, MMPs and fibronectin fragments osteoarthritis
|
pass[Baker2017_Fig14..xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000928#Files)
|FAIL|
MultipleSEDMLs['Baker2017_Fig14.b_1.sedml', 'Baker2017_Fig14.a_3.sedml', 'Baker2017_Fig14.b_2.sedml', 'Baker2017_Fig14.a_2.sedml', 'Baker2017_Fig14.a_1.sedml']
|NA|NA| -|
[BIOMD0000000929](https://www.ebi.ac.uk/biomodels/BIOMD0000000929)
Li2016 - Model for pancreatic Li2016 - Model for pancreatic cancer patients receiving immunotherapy
|
pass[Li2016.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000929#Files)
|pass|
FAIL[Li2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000929#Files)
|pass|
SEDMLfile```failed to validate SEDML file Li2016.sedml```
| -|
[BIOMD0000000930](https://www.ebi.ac.uk/biomodels/BIOMD0000000930)
Liu2017 - chemotherapy targeteLiu2017 - chemotherapy targeted model of tumor immune system
|
pass[Liu2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000930#Files)
|pass|
pass[Liu2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000930#Files)
|FAIL|pass| -|[BIOMD0000000931](https://www.ebi.ac.uk/biomodels/BIOMD0000000931)
Voliotis2019-GnRH Pulse Generation|
pass[Voliotis2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000931#Files)
|pass|
pass[Voliotis2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000931#Files)
|FAIL|
NoSBMLelement```No sbml element exists for symbol 'Firing_Rate__HZ'```
| -|
[BIOMD0000000932](https://www.ebi.ac.uk/biomodels/BIOMD0000000932)
Garde2020-Minimal model descriGarde2020-Minimal model describing metabolic oscillations in Bacillus subtilis biofilms
|
pass[Garde2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000932#Files)
|pass|
MultipleSEDMLs['Garde2020-Fig2.sedml', 'Garde2020-Fig4.sedml']
|NA|NA| -|
[BIOMD0000000933](https://www.ebi.ac.uk/biomodels/BIOMD0000000933)
Kosiuk2015-Geometric analysis Kosiuk2015-Geometric analysis of the Goldbeter minimal model for the embryonic cell cycle
|
pass[Kosiuk2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000933#Files)
|pass|
pass[Kosiuk2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000933#Files)
|FAIL|pass| -|
[BIOMD0000000934](https://www.ebi.ac.uk/biomodels/BIOMD0000000934)
Linke2017 - Synchronization ofLinke2017 - Synchronization of Cyclins' expression by the Fkh2 transcription factor in the budding yeast cell cycle
|
pass[Linke2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000934#Files)
|pass|
MultipleSEDMLs['Linke2017_figure1e.sedml', 'Linke2017_figure1d.sedml', 'Linke2017_figure1c.sedml', 'Linke2017f1b.sedml']
|NA|NA| -|
[BIOMD0000000935](https://www.ebi.ac.uk/biomodels/BIOMD0000000935)
Ferrel2011 - Cdk1 and APC reguFerrel2011 - Cdk1 and APC regulation in cell cycle in Xenopus laevis
|
pass[Ferrel2011.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000935#Files)
|pass|
pass[Ferrel2011.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000935#Files)
|FAIL|pass| -|
[BIOMD0000000936](https://www.ebi.ac.uk/biomodels/BIOMD0000000936)
ferrel2011 - autonomous biocheferrel2011 - autonomous biochemical oscillator in cell cycle in Xenopus laevis v2
|
pass[Ferrel2011_V2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000936#Files)
|FAIL|
pass[Ferrel2011_V2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000936#Files)
|FAIL|pass| -|
[BIOMD0000000937](https://www.ebi.ac.uk/biomodels/BIOMD0000000937)
Ferrel2011 - Autonomous biocheFerrel2011 - Autonomous biochemical oscillator in regulation of CDK1, Plk1, and APC in Xenopus Laevis cell cycle
|
pass[Ferrel2011_V3.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000937#Files)
|pass|
pass[Ferrel2011_V3.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000937#Files)
|FAIL|pass| -|
[BIOMD0000000938](https://www.ebi.ac.uk/biomodels/BIOMD0000000938)
Gerard2013 - Model 3 - EmbryonGerard2013 - Model 3 - Embryonic-type eukaryotic Cell Cycle regulation based on negative feedback between Cdk/cyclin and APC and competitive inhibition between Cdk/cyclin and securin for polyubiquitylation_1
|
pass[Gerard2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000938#Files)
|pass|
pass[Gerard2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000938#Files)
|FAIL|pass| -|
[BIOMD0000000939](https://www.ebi.ac.uk/biomodels/BIOMD0000000939)
Iwamoto2010 - Cell cycle reponIwamoto2010 - Cell cycle reponse to DNA damage
|
pass[Iwamoto2010.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000939#Files)
|FAIL|
MultipleSEDMLs['iwamoto2010_Fig6.sedml', 'iwamoto2010_Fig4.sedml', 'iwamoto2010_Fig3.sedml']
|NA|NA| -|
[BIOMD0000000940](https://www.ebi.ac.uk/biomodels/BIOMD0000000940)
Tang2019 - Pharmacology modellTang2019 - Pharmacology modelling of AURKB and ZAK interaction in TNBC
|
pass[Tang2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000940#Files)
|pass|
FAIL[Tang2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000940#Files)
|pass|
SEDMLfile```failed to validate SEDML file Tang2019.sedml```
| -|
[BIOMD0000000941](https://www.ebi.ac.uk/biomodels/BIOMD0000000941)
Gerard2010 - Progression of maGerard2010 - Progression of mammalian cell cycle by successive activation of various cyclin cdk complexes
|
pass[gerard2010.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000941#Files)
|pass|
pass[gerard2010.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000941#Files)
|FAIL|pass| -|
[BIOMD0000000942](https://www.ebi.ac.uk/biomodels/BIOMD0000000942)
Sible2007 - Mitotic cell cycleSible2007 - Mitotic cell cycle mecanism in Xenopus Laevis
|
pass[Sible2007.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000942#Files)
|pass|
pass[Sible2007.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000942#Files)
|FAIL|pass| -|
[BIOMD0000000943](https://www.ebi.ac.uk/biomodels/BIOMD0000000943)
Hat2016 - Reponse of p53 SysteHat2016 - Reponse of p53 System to irradiation in cell fate decision making
|
pass[Hat2016.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000943#Files)
|pass|
pass[Hat2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000943#Files)
|FAIL|pass| -|
[BIOMD0000000944](https://www.ebi.ac.uk/biomodels/BIOMD0000000944)
Goldbeter2013-Oscillatory actiGoldbeter2013-Oscillatory activity of cyclin-dependent kinases in the cell cycle
|
pass[Goldbeter2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000944#Files)
|pass|
pass[Goldbeter2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000944#Files)
|FAIL|pass| -|
[BIOMD0000000945](https://www.ebi.ac.uk/biomodels/BIOMD0000000945)
Evans2004 - Cell based mathemaEvans2004 - Cell based mathematical model of topotecan
|
pass[Evans2004.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000945#Files)
|pass|
pass[Evans2004.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000945#Files)
|FAIL|pass| -|
[BIOMD0000000946](https://www.ebi.ac.uk/biomodels/BIOMD0000000946)
Evans2005 - Compartmental modeEvans2005 - Compartmental model for antineoplastic drug topotecan in breast cancer cells
|
pass[Evans2005.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000946#Files)
|pass|
pass[Evans2005.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000946#Files)
|FAIL|pass| -|
[BIOMD0000000947](https://www.ebi.ac.uk/biomodels/BIOMD0000000947)
Lee2017 - Paracetamol first-paLee2017 - Paracetamol first-pass metabolism PK model
|
pass[Lee2017_Paracetamol_Metabolism.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000947#Files)
|pass|
pass[Evans2005.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000947#Files)
|FAIL|
NoSBMLelement```No sbml element exists for concentration selection '[L_e]'```
| -|
[BIOMD0000000948](https://www.ebi.ac.uk/biomodels/BIOMD0000000948)
Landberg2009 - AlkylresorcinolLandberg2009 - Alkylresorcinol Dose Response
|
pass[Landberg2009.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000948#Files)
|FAIL|
pass[Landberg2009.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000948#Files)
|FAIL|pass| -|
[BIOMD0000000949](https://www.ebi.ac.uk/biomodels/BIOMD0000000949)
Chitnis2008 - Mathematical modChitnis2008 - Mathematical model of malaria transmission
|
pass[Chitnis2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000949#Files)
|pass|
pass[Chitnis2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000949#Files)
|FAIL|pass| -|
[BIOMD0000000950](https://www.ebi.ac.uk/biomodels/BIOMD0000000950)
Chitnis2012 - Model Rift ValleChitnis2012 - Model Rift Valley Fever transmission between cattle and mosquitoes (Model 1)
|
pass[Chitnis2012_model_1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000950#Files)
|pass|
pass[Chitnis2012_model_1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000950#Files)
|FAIL|pass| -|
[BIOMD0000000951](https://www.ebi.ac.uk/biomodels/BIOMD0000000951)
Mitrophanov2015 - Simulating eMitrophanov2015 - Simulating extended Hockin Blood Coagulation Model under varied pH
|
pass[Mitrophanov2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000951#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000000952](https://www.ebi.ac.uk/biomodels/BIOMD0000000952)
Rodenfels2019 - Heat OscillatiRodenfels2019 - Heat Oscillations Driven by the Embryonic Cell Cycle Reveal the Energetic Costs of Signaling
|
pass[Rodenfels2019_V1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000952#Files)
|pass|
FAIL[Rodenfels2019_V1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000952#Files)
|pass|
SEDMLfile```failed to validate SEDML file Rodenfels2019_V1.sedml```
| -|
[BIOMD0000000953](https://www.ebi.ac.uk/biomodels/BIOMD0000000953)
Queralt2006 - Initiation of miQueralt2006 - Initiation of mitotic exit by downregulation of PP2A in budding yeast
|
pass[queralt2006_final.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000953#Files)
|FAIL|
pass[queralt2006_final.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000953#Files)
|FAIL|pass| -|
[BIOMD0000000954](https://www.ebi.ac.uk/biomodels/BIOMD0000000954)
Pandey2018-reversible transitiPandey2018-reversible transition between quiescence and proliferation
|
pass[Pandey2018_wildtype.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000954#Files)
|pass|
MultipleSEDMLs['Pandey2018_Figure2D.sedml', 'Pandey2018_Figure2C.sedml', 'Pandey2018_Figure2B.sedml', 'Pandey2018_Figure2A.sedml']
|NA|NA| -|
[BIOMD0000000955](https://www.ebi.ac.uk/biomodels/BIOMD0000000955)
Giordano2020 - SIDARTHE model Giordano2020 - SIDARTHE model of COVID-19 spread in Italy
|
pass[Giordano2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000955#Files)
|FAIL|
pass[Giordano2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000955#Files)
|FAIL|pass| -|
[BIOMD0000000956](https://www.ebi.ac.uk/biomodels/BIOMD0000000956)
Bertozzi2020 - SIR model of scBertozzi2020 - SIR model of scenarios of COVID-19 spread in CA and NY
|
pass[Bertozzi2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000956#Files)
|pass|
pass[Bertozzi2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000956#Files)
|FAIL|
other```only integers, slices (`:`), ellipsis (`...`), numpy.newaxis (`None`) and integer or boolean arrays are valid indices```
| -|
[BIOMD0000000957](https://www.ebi.ac.uk/biomodels/BIOMD0000000957)
Roda2020 - SIR model of COVID-Roda2020 - SIR model of COVID-19 spread in Wuhan
|
pass[Roda2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000957#Files)
|pass|
pass[Roda2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000957#Files)
|FAIL|pass| -|
[BIOMD0000000958](https://www.ebi.ac.uk/biomodels/BIOMD0000000958)
Ndairou2020 - early-stage tranNdairou2020 - early-stage transmission dynamics of COVID-19 in Wuhan
|
pass[Ndairou2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000958#Files)
|FAIL|
FAIL[Ndairou2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000958#Files)
|pass|
SEDMLfile```failed to validate SEDML file Ndairou2020.sedml```
| -|
[BIOMD0000000959](https://www.ebi.ac.uk/biomodels/BIOMD0000000959)
Kok2020 - IFNalpha-induced sigKok2020 - IFNalpha-induced signaling in Huh7.5 cells
|
pass[Kok2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000959#Files)
|pass|
pass[Kok2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000959#Files)
|FAIL|pass| -|
[BIOMD0000000960](https://www.ebi.ac.uk/biomodels/BIOMD0000000960)
Paiva2020 - SEIAHRD model of tPaiva2020 - SEIAHRD model of transmission dynamics of COVID-19
|
pass[Paiva2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000960#Files)
|pass|
pass[Paiva2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000960#Files)
|FAIL|pass| -|
[BIOMD0000000961](https://www.ebi.ac.uk/biomodels/BIOMD0000000961)
McDougal2017 - Metabolism in iMcDougal2017 - Metabolism in ischemic cardiomyocytes
|
FAIL[McDougal2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000961#Files)
|FAIL|
pass[McDougal2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000961#Files)
|FAIL|pass| -|
[BIOMD0000000962](https://www.ebi.ac.uk/biomodels/BIOMD0000000962)
Zhao2020 - SUQC model of COVIDZhao2020 - SUQC model of COVID-19 transmission dynamics in Wuhan, Hubei, and China
|
pass[Zhao2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000962#Files)
|pass|
FAIL[Zhao2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000962#Files)
|pass|
SEDMLfile```failed to validate SEDML file Zhao2020.sedml```
| -|
[BIOMD0000000963](https://www.ebi.ac.uk/biomodels/BIOMD0000000963)
Weitz2020 - SIR model of COVIDWeitz2020 - SIR model of COVID-19 transmission with shielding
|
pass[Weitz2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000963#Files)
|pass|
pass[Weitz2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000963#Files)
|FAIL|pass| -|
[BIOMD0000000964](https://www.ebi.ac.uk/biomodels/BIOMD0000000964)
Mwalili2020 - SEIR model of COMwalili2020 - SEIR model of COVID-19 transmission and environmental pathogen prevalence
|
pass[Mwalili2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000964#Files)
|FAIL|
pass[Mwalili2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000964#Files)
|FAIL|pass| -|
[BIOMD0000000965](https://www.ebi.ac.uk/biomodels/BIOMD0000000965)
LeBeau1999 - IP3-dependent intLeBeau1999 - IP3-dependent intracellular calcium oscillations due to agonist stimulation from Cholecytokinin
|
FAIL[LeBeau1999_Phosphorylation_CCK.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000965#Files)
|FAIL|
pass[LeBeau1999_Phosphorylation_CCK.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000965#Files)
|FAIL|pass| -|
[BIOMD0000000966](https://www.ebi.ac.uk/biomodels/BIOMD0000000966)
Cui2008 - in vitro transcriptiCui2008 - in vitro transcriptional response of zinc homeostasis system in Escherichia coli
|
FAIL[Cui2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000966#Files)
|FAIL|
pass[Cui2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000966#Files)
|FAIL|pass| -|
[BIOMD0000000967](https://www.ebi.ac.uk/biomodels/BIOMD0000000967)
McLean1991 - Behaviour of HIV McLean1991 - Behaviour of HIV in the presence of zidovudine
|
FAIL[McLean1991.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000967#Files)
|FAIL|
pass[McLean1991.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000967#Files)
|FAIL|pass| -|
[BIOMD0000000968](https://www.ebi.ac.uk/biomodels/BIOMD0000000968)
Palmer2008 - Negative FeedbackPalmer2008 - Negative Feedback in IL-7 mediated Jak-Stat signaling
|
pass[Palmer2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000968#Files)
|pass|
pass[Palmer2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000968#Files)
|FAIL|pass| -|
[BIOMD0000000969](https://www.ebi.ac.uk/biomodels/BIOMD0000000969)
Cuadros2020 - SIHRD spatiotempCuadros2020 - SIHRD spatiotemporal model of COVID-19 transmission in Ohio
|
pass[Cuadros2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000969#Files)
|pass|
pass[Cuadros2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000969#Files)
|FAIL|pass| -|
[BIOMD0000000970](https://www.ebi.ac.uk/biomodels/BIOMD0000000970)
Hou2020 - SEIR model of COVID-Hou2020 - SEIR model of COVID-19 transmission in Wuhan
|
pass[Hou2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000970#Files)
|pass|
pass[Hou2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000970#Files)
|FAIL|pass| -|
[BIOMD0000000971](https://www.ebi.ac.uk/biomodels/BIOMD0000000971)
Tang2020 - Estimation of transTang2020 - Estimation of transmission risk of COVID-19 and impact of public health interventions
|
pass[Tang2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000971#Files)
|pass|
pass[Tang2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000971#Files)
|FAIL|pass| -|
[BIOMD0000000972](https://www.ebi.ac.uk/biomodels/BIOMD0000000972)
Tang2020 - Estimation of transTang2020 - Estimation of transmission risk of COVID-19 and impact of public health interventions - update
|
pass[Tang2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000972#Files)
|pass|
pass[Tang2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000972#Files)
|FAIL|pass| -|
[BIOMD0000000973](https://www.ebi.ac.uk/biomodels/BIOMD0000000973)
Dasgupta2020 - Reduced model oDasgupta2020 - Reduced model of receptor clusturing and aggregation
|
pass[Dasgupta2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000973#Files)
|pass|
pass[Dasgupta2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000973#Files)
|FAIL|pass| -|
[BIOMD0000000974](https://www.ebi.ac.uk/biomodels/BIOMD0000000974)
Carcione2020 - Deterministic SCarcione2020 - Deterministic SEIR simulation of a COVID-19 outbreak
|
pass[Carcione2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000974#Files)
|pass|
pass[Carcione2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000974#Files)
|FAIL|pass| -|
[BIOMD0000000975](https://www.ebi.ac.uk/biomodels/BIOMD0000000975)
Leloup2004 - Mammalian CircadiLeloup2004 - Mammalian Circadian Rhythm models for 23.8 and 24.2 hours timeperiod
|
pass[Leloup2004_Set1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000975#Files)
|FAIL|
pass[Leloup2004_Set1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000975#Files)
|FAIL|pass| -|
[BIOMD0000000976](https://www.ebi.ac.uk/biomodels/BIOMD0000000976)
Ghanbari2020 - forecasting theGhanbari2020 - forecasting the second wave of COVID-19 in Iran
|
pass[Ghanbari2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000976#Files)
|pass|
pass[Ghanbari2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000976#Files)
|FAIL|pass| -|
[BIOMD0000000977](https://www.ebi.ac.uk/biomodels/BIOMD0000000977)
Sarkar2020 - SAIR model of COVSarkar2020 - SAIR model of COVID-19 transmission with quarantine measures in India
|
pass[Sarkar2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000977#Files)
|pass|
pass[Sarkar2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000977#Files)
|FAIL|pass| -|
[BIOMD0000000978](https://www.ebi.ac.uk/biomodels/BIOMD0000000978)
Mukandavire2020 - SEIR model oMukandavire2020 - SEIR model of early COVID-19 transmission in South Africa
|
pass[Mukandavire2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000978#Files)
|pass|
pass[Mukandavire2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000978#Files)
|FAIL|pass| -|
[BIOMD0000000979](https://www.ebi.ac.uk/biomodels/BIOMD0000000979)
Malkov2020 - SEIRS model of COMalkov2020 - SEIRS model of COVID-19 transmission with reinfection
|
pass[Malkov2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000979#Files)
|pass|
pass[Malkov2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000979#Files)
|FAIL|
OutOfRange```list index out of range```
| -|
[BIOMD0000000980](https://www.ebi.ac.uk/biomodels/BIOMD0000000980)
Malkov2020 - SEIRS model of COMalkov2020 - SEIRS model of COVID-19 transmission with time-varying R values and reinfection
|
pass[Malkov2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000980#Files)
|pass|
pass[Malkov2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000980#Files)
|FAIL|
OutOfRange```list index out of range```
| -|
[BIOMD0000000981](https://www.ebi.ac.uk/biomodels/BIOMD0000000981)
Wan2020 - risk estimation and Wan2020 - risk estimation and prediction of the transmission of COVID-19 in maninland China excluding Hubei province
|
pass[Wan2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000981#Files)
|pass|
pass[Wan2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000981#Files)
|FAIL|pass| -|
[BIOMD0000000982](https://www.ebi.ac.uk/biomodels/BIOMD0000000982)
Law2020 - SIR model of COVID-1Law2020 - SIR model of COVID-19 transmission in Malyasia with time-varying parameters
|
pass[Law2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000982#Files)
|FAIL|
pass[Law2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000982#Files)
|FAIL|pass| -|
[BIOMD0000000983](https://www.ebi.ac.uk/biomodels/BIOMD0000000983)
Zongo2020 - model of COVID-19 Zongo2020 - model of COVID-19 transmission dynamics under containment measures in France
|
pass[Zongo2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000983#Files)
|pass|
pass[Zongo2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000983#Files)
|FAIL|pass| -|
[BIOMD0000000984](https://www.ebi.ac.uk/biomodels/BIOMD0000000984)
Fang2020 - SEIR model of COVIDFang2020 - SEIR model of COVID-19 transmission considering government interventions in Wuhan
|
pass[Fang2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000984#Files)
|pass|
pass[Fang2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000984#Files)
|FAIL|pass| -|
[BIOMD0000000985](https://www.ebi.ac.uk/biomodels/BIOMD0000000985)
Gex-Fabry1984 - model of recepGex-Fabry1984 - model of receptor-mediated endocytosis of EGF in BALB/c 3T3 cells
|
pass[Gex-Fabry1984.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000985#Files)
|pass|
pass[Gex-Fabry1984.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000985#Files)
|FAIL|pass| -|
[BIOMD0000000986](https://www.ebi.ac.uk/biomodels/BIOMD0000000986)
Aubry1995 - Multi-compartment Aubry1995 - Multi-compartment model of fluid-phase endocytosis kinetics in Dictyostelium discoideum
|
pass[Aubry1995.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000986#Files)
|pass|
pass[Aubry1995.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000986#Files)
|FAIL|pass| -|
[BIOMD0000000987](https://www.ebi.ac.uk/biomodels/BIOMD0000000987)
Aubry1995 - Nine-compartment mAubry1995 - Nine-compartment model of fluid-phase endocytosis kinetics in Dictyostelium discoideum
|
pass[Aubry1995.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000987#Files)
|pass|
pass[Aubry1995.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000987#Files)
|FAIL|pass| -|
[BIOMD0000000988](https://www.ebi.ac.uk/biomodels/BIOMD0000000988)
Westerhoff2020 - systems bioloWesterhoff2020 - systems biology model of the coronavirus pandemic 2020
|
FAIL[Westerhoff2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000988#Files)
|FAIL|
pass[Westerhoff2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000988#Files)
|FAIL|pass| -|
[BIOMD0000000989](https://www.ebi.ac.uk/biomodels/BIOMD0000000989)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling - Dose dependent dynamics upon TGFb stimulation
|
pass[MODEL1712050001.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000989#Files)
|FAIL|
FAIL[MODEL1712050001.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000989#Files)
|pass|
SEDMLfile```failed to validate SEDML file MODEL1712050001.sedml```
| -|
[BIOMD0000000990](https://www.ebi.ac.uk/biomodels/BIOMD0000000990)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling - Degradation of 25pM ligand (TGFb)
|
pass[MODEL1712050002.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000990#Files)
|FAIL|
FAIL[MODEL1712050002.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000990#Files)
|pass|
SEDMLfile```failed to validate SEDML file MODEL1712050002.sedml```
| -|
[BIOMD0000000991](https://www.ebi.ac.uk/biomodels/BIOMD0000000991)
Okuonghae2020 - SEAIR model ofOkuonghae2020 - SEAIR model of COVID-19 transmission in Lagos, Nigeria
|
pass[Okuonghae2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000991#Files)
|FAIL|
pass[Okuonghae2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000991#Files)
|FAIL|pass| -|
[BIOMD0000000994](https://www.ebi.ac.uk/biomodels/BIOMD0000000994)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling - Restimulation with 5pM TGFb at 3hr
|
pass[MODEL1712050003.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000994#Files)
|FAIL|
pass[MODEL1712050003.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000994#Files)
|FAIL|pass| -|
[BIOMD0000000995](https://www.ebi.ac.uk/biomodels/BIOMD0000000995)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling - Restimulation with 5pM TGFb at 8hr
|
pass[MODEL1712050004.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000995#Files)
|FAIL|
pass[MODEL1712050004.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000995#Files)
|FAIL|pass| -|
[BIOMD0000000996](https://www.ebi.ac.uk/biomodels/BIOMD0000000996)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling - Restimulation with 100pM TGFb at 6hr
|
pass[MODEL1712050005.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000996#Files)
|FAIL|
pass[MODEL1712050005.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000996#Files)
|FAIL|pass| -|
[BIOMD0000000997](https://www.ebi.ac.uk/biomodels/BIOMD0000000997)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling - DRB treatment
|
pass[MODEL1712050006.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000997#Files)
|FAIL|
pass[MODEL1712050006.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000997#Files)
|FAIL|pass| -|
[BIOMD0000000998](https://www.ebi.ac.uk/biomodels/BIOMD0000000998)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling Class 1
|
pass[MODEL1712050007.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000998#Files)
|FAIL|
pass[MODEL1712050007.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000998#Files)
|FAIL|pass| -|
[BIOMD0000000999](https://www.ebi.ac.uk/biomodels/BIOMD0000000999)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling Class 2
|
pass[MODEL1712050008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000999#Files)
|FAIL|
pass[MODEL1712050008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000999#Files)
|FAIL|pass| -|
[BIOMD0000001000](https://www.ebi.ac.uk/biomodels/BIOMD0000001000)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling Class 3
|
pass[MODEL1712050009.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001000#Files)
|FAIL|
pass[MODEL1712050009.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001000#Files)
|FAIL|pass| -|
[BIOMD0000001001](https://www.ebi.ac.uk/biomodels/BIOMD0000001001)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling Class 4
|
pass[MODEL1712050010.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001001#Files)
|FAIL|
pass[MODEL1712050010.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001001#Files)
|FAIL|pass| -|
[BIOMD0000001002](https://www.ebi.ac.uk/biomodels/BIOMD0000001002)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling Class 5
|
pass[MODEL1712050011.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001002#Files)
|FAIL|
pass[MODEL1712050011.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001002#Files)
|FAIL|pass| -|
[BIOMD0000001003](https://www.ebi.ac.uk/biomodels/BIOMD0000001003)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling Class 6
|
pass[MODEL17120500012.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001003#Files)
|FAIL|
pass[MODEL17120500012.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001003#Files)
|FAIL|pass| -|
[BIOMD0000001004](https://www.ebi.ac.uk/biomodels/BIOMD0000001004)
Intosalmi2015 - Th17 core netwIntosalmi2015 - Th17 core network model
|
pass[Intosalmi2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001004#Files)
|pass|
FAIL[Intosalmi2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001004#Files)
|pass|
SEDMLfile```failed to validate SEDML file Intosalmi2015.sedml```
| -|
[BIOMD0000001005](https://www.ebi.ac.uk/biomodels/BIOMD0000001005)
Bae2017 - Mathematical analysiBae2017 - Mathematical analysis of circadian disruption and metabolic re-entrainment of hepatic gluconeogenesis
|
pass[Bae2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001005#Files)
|FAIL|
pass[Bae2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001005#Files)
|FAIL|pass| -|
[BIOMD0000001006](https://www.ebi.ac.uk/biomodels/BIOMD0000001006)
Ciliberto2005 - Steady states Ciliberto2005 - Steady states and oscillations in the p53/Mdm2 network
|
pass[Ciliberto2005.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001006#Files)
|pass|
pass[Ciliberto2005.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001006#Files)
|FAIL|pass| -|
[BIOMD0000001007](https://www.ebi.ac.uk/biomodels/BIOMD0000001007)
Zhang2007 - Mechanism of DNA dZhang2007 - Mechanism of DNA damage response (Model1)
|
pass[Zhang2007_M1_lowDD.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001007#Files)
|pass|
MultipleSEDMLs['Zhang2007_M1_highDD.sedml', 'Zhang2007_M1_lowDD.sedml']
|NA|NA| -|
[BIOMD0000001008](https://www.ebi.ac.uk/biomodels/BIOMD0000001008)
Scaramellini1997 - Two-receptoScaramellini1997 - Two-receptor:One-transducer (2R1T) model for analysis of interactions between agonists
|
pass[Scaramellini1997.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001008#Files)
|pass|
pass[Scaramellini1997.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001008#Files)
|FAIL|
OutOfRange```list index out of range```
| -|
[BIOMD0000001009](https://www.ebi.ac.uk/biomodels/BIOMD0000001009)
Zhang2007 - Mechanism of DNA dZhang2007 - Mechanism of DNA damage response (Model2)
|
pass[Zhang2007_M2_low_dose.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001009#Files)
|pass|
FAIL[Zhang2007_M2_high_dose.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001009#Files)
|pass|
SEDMLfile```failed to validate SEDML file Zhang2007_M2_high_dose.sedml```
| -|
[BIOMD0000001010](https://www.ebi.ac.uk/biomodels/BIOMD0000001010)
Zhang2007 - Mechanism of DNA dZhang2007 - Mechanism of DNA damage response (Model3)
|
pass[Zhang2007_M3_low_DD.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001010#Files)
|pass|
MultipleSEDMLs['Zhang2007_M3_low_DD.sedml', 'Zhang2007_M3_high_DD.sedml']
|NA|NA| -|
[BIOMD0000001011](https://www.ebi.ac.uk/biomodels/BIOMD0000001011)
Leon-Triana2020 - CAR T-cell tLeon-Triana2020 - CAR T-cell therapy in B-cell acute lymphoblastic leukaemia
|
pass[Leon-Triana2020 (eqs 4).xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001011#Files)
|FAIL|
pass[Leon-Triana2020 (eqs 4).sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001011#Files)
|FAIL|pass| -|
[BIOMD0000001012](https://www.ebi.ac.uk/biomodels/BIOMD0000001012)
Leon-Triana2020 - CAR T-cell tLeon-Triana2020 - CAR T-cell therapy in B-cell acute lymphoblastic leukaemia with contribution from immature B cells
|
pass[Leon-Triana2020 (eqs 3).xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001012#Files)
|FAIL|
pass[Leon-Triana2020 (eqs 3).sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001012#Files)
|FAIL|pass| -|
[BIOMD0000001013](https://www.ebi.ac.uk/biomodels/BIOMD0000001013)
Leon-Triana2021 - Competition Leon-Triana2021 - Competition between tumour cells and single-target CAR T-cells
|
pass[Leon-Triana2021 (eqs 1 and 2).xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001013#Files)
|FAIL|
MultipleSEDMLs['Leon-Triana2021 (eqs 1 and 2) - fig 4(a).sedml', 'Leon-Triana2021 (eqs 1 and 2) - fig 1 (a, c).sedml', 'Leon-Triana2021 (eqs 1 and 2) - fig 3(b).sedml', 'Leon-Triana2021 (eqs 1 and 2) - fig 3(a).sedml', 'Leon-Triana2021 (eqs 1 and 2) - fig 5(a).sedml', 'Leon-Triana2021 (eqs 1 and 2) - fig 1 (b, d).sedml', 'Leon-Triana2021 (eqs 1 and 2) - fig 4(c).sedml', 'Leon-Triana2021 (eqs 1 and 2) - fig 4(b).sedml']
|NA|NA| -|
[BIOMD0000001014](https://www.ebi.ac.uk/biomodels/BIOMD0000001014)
Leon-Triana2021 - Competition Leon-Triana2021 - Competition between tumour cells and dual-target CAR T-cells
|
pass[Leon-Triana2021 (eqs 3-6).xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001014#Files)
|FAIL|
pass[Leon-Triana2021 (eqs 3-6).sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001014#Files)
|FAIL|pass| -|
[BIOMD0000001015](https://www.ebi.ac.uk/biomodels/BIOMD0000001015)
Jarrah2014 - mathematical modeJarrah2014 - mathematical model of the immune response in muscle degeneration and subsequent regeneration in Duchenne muscular dystrophy in mdx mice
|
pass[Jarrah2014.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001015#Files)
|pass|
pass[Jarrah2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001015#Files)
|FAIL|pass| -|
[BIOMD0000001016](https://www.ebi.ac.uk/biomodels/BIOMD0000001016)
Bakshi2020 - Truncated minimalBakshi2020 - Truncated minimal model of alternative pathway of complement system
|
pass[Bakshi2020 truncated minimal model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001016#Files)
|FAIL|
FAIL[Bakshi2020 truncated minimal model.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001016#Files)
|pass|
SEDMLfile```failed to validate SEDML file Bakshi2020 truncated minimal model.sedml```
| -|
[BIOMD0000001017](https://www.ebi.ac.uk/biomodels/BIOMD0000001017)
Bakshi2020 - Minimal model of Bakshi2020 - Minimal model of alternative pathway of complement system
|
pass[Bakshi2020 minimal model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001017#Files)
|FAIL|
pass[Bakshi2020 minimal model.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001017#Files)
|FAIL|pass| -|
[BIOMD0000001018](https://www.ebi.ac.uk/biomodels/BIOMD0000001018)
Bakshi2020 - Properdin model oBakshi2020 - Properdin model of alternative pathway of complement system
|
pass[Bakshi2020 properdin model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001018#Files)
|FAIL|
FAIL[Bakshi2020 properdin model.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001018#Files)
|pass|
SEDMLfile```failed to validate SEDML file Bakshi2020 properdin model.sedml```
| -|
[BIOMD0000001019](https://www.ebi.ac.uk/biomodels/BIOMD0000001019)
Barros2021 - CARTmath, MathemaBarros2021 - CARTmath, Mathematical Model of CAR-T Immunotherapy in HDLM-2 cell line
|
pass[Barros2021_HDLM2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001019#Files)
|FAIL|
FAIL[Barros2021_HDLM2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001019#Files)
|pass|
SEDMLfile```failed to validate SEDML file Barros2021_HDLM2.sedml```
| -|
[BIOMD0000001020](https://www.ebi.ac.uk/biomodels/BIOMD0000001020)
Barros2021 - CARTmath, MathemaBarros2021 - CARTmath, Mathematical Model of CAR-T Immunotherapy in Raji Cell Line
|
pass[Barros2021_RAJI.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001020#Files)
|FAIL|
FAIL[Barros2021_RAJI.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001020#Files)
|pass|
SEDMLfile```failed to validate SEDML file Barros2021_RAJI.sedml```
| -|
[BIOMD0000001021](https://www.ebi.ac.uk/biomodels/BIOMD0000001021)
Lavigne2021 - Non-spatial modeLavigne2021 - Non-spatial model of viral infection dynamics and interferon response of well-mixed viral infection
|
pass[Lavigne2021 - ODE model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001021#Files)
|FAIL|
MultipleSEDMLs['Lavigne2021 - ODE model (paracrine only condition).sedml', 'Lavigne2021 - ODE model (with IFN condition).sedml', 'Lavigne2021 - ODE model (no IFN condition).sedml']
|NA|NA| -|
[BIOMD0000001022](https://www.ebi.ac.uk/biomodels/BIOMD0000001022)
Creemers2021 - Tumor-immune dyCreemers2021 - Tumor-immune dynamics and implications on immunotherapy responses
|
pass[Creemers2021.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001022#Files)
|FAIL|
MultipleSEDMLs['Creemers2021 - Fig 2(B) inset 1.sedml', 'Creemers2021 - Fig 2(A) inset 1.sedml', 'Creemers2021 - Fig 2(A) inset 2.sedml', 'Creemers2021 - Fig 1(C).sedml', 'Creemers2021 - Fig 2(B) inset 2.sedml', 'Creemers2021 - Fig 1(B).sedml', 'Creemers2021 - Fig 1(D).sedml']
|NA|NA| -|
[BIOMD0000001023](https://www.ebi.ac.uk/biomodels/BIOMD0000001023)
Alharbi2020 - An ODE-based modAlharbi2020 - An ODE-based model of the dynamics of tumor cell progression and its effects on normal cell growth and immune system functionality
|
pass[Alharbi2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001023#Files)
|pass|
pass[Alharbi2020 - Fig 5.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001023#Files)
|FAIL|pass| -|
[BIOMD0000001024](https://www.ebi.ac.uk/biomodels/BIOMD0000001024)
Chaudhury2020 - Lotka-VolterraChaudhury2020 - Lotka-Volterra mathematical model of CAR-T cell and tumour kinetics
|
pass[Chaudhury2020 Eq 4-5.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001024#Files)
|FAIL|
pass[Chaudhury2020 Eq 4-5 - Fig 3(C) simulation.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001024#Files)
|FAIL|pass| -|
[BIOMD0000001025](https://www.ebi.ac.uk/biomodels/BIOMD0000001025)
Chaudhury2020 - EC50 expansionChaudhury2020 - EC50 expansion and killing mathematical model of CAR-T cell and tumour kinetics
|
pass[Chaudhury2020 Eq 7-9.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001025#Files)
|pass|
MultipleSEDMLs['Chaudhury2020 Eq 7-9 - Fig 3(B) simulation.sedml', 'Chaudhury2020 Eq 7-9 - Fig 3(A) simulation.sedml', 'Chaudhury2020 Eq 7-9 - Fig 4(B) simulation.sedml', 'Chaudhury2020 Eq 7-9 - Fig 4(A) simulation.sedml']
|NA|NA| -|
[BIOMD0000001026](https://www.ebi.ac.uk/biomodels/BIOMD0000001026)
Kurlovics2021 - Metformin partKurlovics2021 - Metformin partitioning between plasma and RBC with independent Kin and Kout coefficients
|
pass[Kurlovics2021.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001026#Files)
|pass|
FAIL[Kurlovics2021.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001026#Files)
|pass|
SEDMLfile```failed to validate SEDML file Kurlovics2021.sedml```
| -|
[BIOMD0000001027](https://www.ebi.ac.uk/biomodels/BIOMD0000001027)
Zake2021 - PBPK model of metfoZake2021 - PBPK model of metformin in mice: single dose peroral
|
pass[Zake2021_Metformin+Mice+PO.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001027#Files)
|pass|
pass[Zake2021_Metformin+Mice+PO.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001027#Files)
|FAIL|pass| -|
[BIOMD0000001028](https://www.ebi.ac.uk/biomodels/BIOMD0000001028)
Zake2021 - PBPK model of metfoZake2021 - PBPK model of metformin in humans, single PO dose
|
pass[Zake2021_Metformin+Human+single+PO+dose.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001028#Files)
|pass|
pass[Zake2021_Metformin+Human+single+PO+dose.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001028#Files)
|FAIL|pass| -|
[BIOMD0000001029](https://www.ebi.ac.uk/biomodels/BIOMD0000001029)
Zake2021 - PBPK model of metfoZake2021 - PBPK model of metformin in humans, eight PO administrations with 12h interval
|
pass[Zake2021_Metformin+Human+multiple+PO+dose.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001029#Files)
|pass|
pass[Zake2021_Metformin+Human+multiple+PO+dose.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001029#Files)
|FAIL|
other```duration and steps must be non-negative```
| -|
[BIOMD0000001030](https://www.ebi.ac.uk/biomodels/BIOMD0000001030)
Sontag2017 - Dynamic model of Sontag2017 - Dynamic model of immune responses to antigen presentation by tumor or pathogen
|
pass[Sontag2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001030#Files)
|FAIL|
MultipleSEDMLs['Sontag2017 - Fig 1D shifted ramp simulation.sedml', 'Sontag2017 - Fig 1D shifted exponential simulation.sedml', 'Sontag2017 - Fig 1D new constant value simulation.sedml']
|NA|NA| -|
[BIOMD0000001031](https://www.ebi.ac.uk/biomodels/BIOMD0000001031)
Al-Tuwairqi2020 - Dynamics of Al-Tuwairqi2020 - Dynamics of cancer virotherapy - Phase I treatment
|
pass[Al-Tuwairqi2020 - Phase I virotherapy.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001031#Files)
|FAIL|
MultipleSEDMLs['Al-Tuwairqi2020 - Fig2a simulation.sedml', 'Al-Tuwairqi2020 - Fig2b simulation.sedml']
|NA|NA| -|
[BIOMD0000001032](https://www.ebi.ac.uk/biomodels/BIOMD0000001032)
Al-Tuwairqi2020 - Dynamics of Al-Tuwairqi2020 - Dynamics of cancer radiovirotherapy - Phase II treatment
|
pass[Al-Tuwairqi2020 - Phase II radiovirotherapy treatment.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001032#Files)
|FAIL|
FAIL[Al-Tuwairqi2020 - Fig8 simulation.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001032#Files)
|pass|
SEDMLfile```failed to validate SEDML file Al-Tuwairqi2020 - Fig8 simulation.sedml```
| -|
[BIOMD0000001033](https://www.ebi.ac.uk/biomodels/BIOMD0000001033)
Almuallem2020 - Virus-macrophaAlmuallem2020 - Virus-macrophage-tumour interactions in oncolytic viral therapies
|
pass[Almuallem2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001033#Files)
|pass|
pass[Almuallem2020 - Fig6.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001033#Files)
|FAIL|pass| -|
[BIOMD0000001034](https://www.ebi.ac.uk/biomodels/BIOMD0000001034)
Bunimovich-Mendrazitsky2007 - Bunimovich-Mendrazitsky2007 - Mathematical model of BCG immunotherapy
|
pass[Bunimovich-Mendrazitsky2007.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001034#Files)
|pass|
pass[Bunimovich-Mendrazitsky2007 - Fig4.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001034#Files)
|FAIL|pass| -|
[BIOMD0000001035](https://www.ebi.ac.uk/biomodels/BIOMD0000001035)
Al-Tuwairqi2020 - Dynamics of Al-Tuwairqi2020 - Dynamics of cancer virotherapy with immune response
|
pass[Al-Tuwairqi2020 - Virotherapy.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001035#Files)
|pass|
MultipleSEDMLs['Al-Tuwairqi2020 - Fig2(a) simulation.sedml', 'Al-Tuwairqi2020 - Fig7(a) simulation.sedml', 'Al-Tuwairqi2020 - Fig7(b) simulation.sedml', 'Al-Tuwairqi2020 - Fig2(c) simulation.sedml', 'Al-Tuwairqi2020 - Fig2(b) simulation.sedml']
|NA|NA| -|
[BIOMD0000001036](https://www.ebi.ac.uk/biomodels/BIOMD0000001036)
Cappuccio2007 - Tumor-immune sCappuccio2007 - Tumor-immune system interactions and determination of the optimal therapeutic protocol in immunotherapy
|
pass[Cappuccio2007.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001036#Files)
|pass|
FAIL[Cappuccio2007 - Fig1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001036#Files)
|pass|
SEDMLfile```failed to validate SEDML file Cappuccio2007 - Fig1.sedml```
| -|
[BIOMD0000001037](https://www.ebi.ac.uk/biomodels/BIOMD0000001037)
Alharbi2019 - Tumor-normal modAlharbi2019 - Tumor-normal model (TNM) of the development of tumor cells and their impact on normal cell dynamics
|
pass[Alharbi2019 TNM.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001037#Files)
|pass|
FAIL[Alharbi2019 TNM - Fig10.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001037#Files)
|pass|
SEDMLfile```failed to validate SEDML file Alharbi2019 TNM - Fig10.sedml```
| -|
[BIOMD0000001038](https://www.ebi.ac.uk/biomodels/BIOMD0000001038)
Alharbi2019 - Tumor-normal-vitAlharbi2019 - Tumor-normal-vitamins model (TNVM) of the effects of vitamins on delaying the growth of tumor cells
|
pass[Alharbi2019 TNVM.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001038#Files)
|pass|
FAIL[Alharbi2019 TNVM - Fig11.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001038#Files)
|pass|
SEDMLfile```failed to validate SEDML file Alharbi2019 TNVM - Fig11.sedml```
| -|
[BIOMD0000001039](https://www.ebi.ac.uk/biomodels/BIOMD0000001039)
Zake2021 - PBPK model of metfoZake2021 - PBPK model of metformin in mice: single dose intavenous
|
pass[Zake2021_Metformin+Mice+IV.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001039#Files)
|pass|
FAIL[Zake2021_Metformin+Mice+IV.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001039#Files)
|pass|
SEDMLfile```failed to validate SEDML file Zake2021_Metformin+Mice+IV.sedml```
| -|
[BIOMD0000001040](https://www.ebi.ac.uk/biomodels/BIOMD0000001040)
Kurlovics2021 - Metformin partKurlovics2021 - Metformin partitioning from plasma to RBC, single coefficient
|
pass[Kurlovics2021_single.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001040#Files)
|pass|
FAIL[Kurlovics2021_single.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001040#Files)
|pass|
SEDMLfile```failed to validate SEDML file Kurlovics2021_single.sedml```
| -|
[BIOMD0000001041](https://www.ebi.ac.uk/biomodels/BIOMD0000001041)
Kimmel2021 - T cell competitioKimmel2021 - T cell competition and stochastic extinction events in CAR T cell therapy
|
pass[Kimmel2021.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001041#Files)
|FAIL|
pass[Kimmel2021 - Fig2(a) and (b).sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001041#Files)
|FAIL|pass| -|
[BIOMD0000001042](https://www.ebi.ac.uk/biomodels/BIOMD0000001042)
Makhlouf2020 - No treatment moMakhlouf2020 - No treatment model of the role of CD4 T cells in tumor-immune interactions
|
pass[Makhlouf2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001042#Files)
|FAIL|
MultipleSEDMLs['Makhlouf2020 - Fig1(a).sedml', 'Makhlouf2020 - Fig1(b).sedml', 'Makhlouf2020 - Fig1(c).sedml']
|NA|NA| -|
[BIOMD0000001043](https://www.ebi.ac.uk/biomodels/BIOMD0000001043)
Wodarz2001 - Viruses as antituWodarz2001 - Viruses as antitumor weapons
|
pass[Wodarz2001.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001043#Files)
|pass|
MultipleSEDMLs['Wodarz2001 - Fig3A non-cytotoxic.sedml', 'Wodarz2001 - Fig3A more cytotoxic.sedml']
|NA|NA| -|
[BIOMD0000001044](https://www.ebi.ac.uk/biomodels/BIOMD0000001044)
Csikasz-Nagy2006 - Mammalian CCsikasz-Nagy2006 - Mammalian Cell Cycle model
|
FAIL[Csikasz-Nagy2006.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001044#Files)
|FAIL|
pass[Csikasz-Nagy2006.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001044#Files)
|FAIL|
CV_ILL_INPUT```CVODE Error: CV_ILL_INPUT: One of the inputs to CVode is illegal. This includes the situation when a component of the error weight vectors becomes < 0 during internal time-stepping. It also includes the situation where a root of one of the root functions was found both at t0 and very near t0. The ILL_INPUT flag will also be returned if the linear solver routine CV--- (called by the user after calling CVodeCreate) failed to set one of the linear solver-related fields in cvode_mem or if the linear solver's init routine failed. In any case, the user should see the printed error message for more details.; In virtual double rr::CVODEIntegrator::integrate(double, double)```
| -|
[BIOMD0000001045](https://www.ebi.ac.uk/biomodels/BIOMD0000001045)
Smith&Moore2004 - The SIR modeSmith&Moore2004 - The SIR model for the spread of HongKong Flu
|
pass[Smith and moore2004-the SIR Model for Spread of Disease.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001045#Files)
|pass|
pass[Smith and moore2004-the SIR Model for Spread of Disease.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001045#Files)
|FAIL|pass| -|
[BIOMD0000001046](https://www.ebi.ac.uk/biomodels/BIOMD0000001046)
Raman2005 - Mycolic acid pathwRaman2005 - Mycolic acid pathway of M. tuberculosis
|
pass[Raman2005_MAP.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001046#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000001047](https://www.ebi.ac.uk/biomodels/BIOMD0000001047)
Collier1996 - Delta Notch inteCollier1996 - Delta Notch intercellular signalling and lateral inhibition
|
pass[delta_notch.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001047#Files)
|pass|
pass[delta_notch.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001047#Files)
|pass|pass| -|
[BIOMD0000001048](https://www.ebi.ac.uk/biomodels/BIOMD0000001048)
Siddhartha2002 - Kinetic modelSiddhartha2002 - Kinetic modelling of cancer therapies
|
pass[cancer_therapy.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001048#Files)
|pass|
pass[cancer_therapy.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001048#Files)
|FAIL|pass| -|
[BIOMD0000001052](https://www.ebi.ac.uk/biomodels/BIOMD0000001052)
Alharbi2020 - Tumor and immuneAlharbi2020 - Tumor and immune system competition
|
pass[Tumor_cells_immune_system_competition.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001052#Files)
|pass|
pass[Tumor_cells_immune_system_competition.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001052#Files)
|FAIL|pass| -|
[BIOMD0000001053](https://www.ebi.ac.uk/biomodels/BIOMD0000001053)
Garde2020 - metabolic oscillatGarde2020 - metabolic oscillations in Bacillus subtilis biofilms
|
pass[Garde2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001053#Files)
|pass|
pass[Garde2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001053#Files)
|FAIL|pass| -|[BIOMD0000001054](https://www.ebi.ac.uk/biomodels/BIOMD0000001054)
Pearce2021 - Fibrin Polymerization|
pass[fibrin_polymerization.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001054#Files)
|pass|
pass[fibrin_polymerization.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001054#Files)
|FAIL|pass| -|
[BIOMD0000001055](https://www.ebi.ac.uk/biomodels/BIOMD0000001055)
Jeon2018 - Enzyme clustering iJeon2018 - Enzyme clustering in Glucose metabolism
|
pass[Enzyme_clustering_in glucose_metabolism.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001055#Files)
|pass|
pass[Enzyme_clustering_in glucose_metabolism.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001055#Files)
|FAIL|pass| -|
[BIOMD0000001056](https://www.ebi.ac.uk/biomodels/BIOMD0000001056)
Chulian2021 - feedback signallChulian2021 - feedback signalling in B lymphopoeisis
|
pass[chulian2021.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001056#Files)
|pass|
pass[chulian2021.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001056#Files)
|FAIL|pass| -|[BIOMD0000001057](https://www.ebi.ac.uk/biomodels/BIOMD0000001057)
Nikolov2020 - p53-miR34 model|
pass[Nikolov2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001057#Files)
|pass|
pass[Nikolov2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001057#Files)
|FAIL|pass| -|
[BIOMD0000001058](https://www.ebi.ac.uk/biomodels/BIOMD0000001058)
Novak2022 - Mitotic kinase oscNovak2022 - Mitotic kinase oscillation
|
pass[Novak2022.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001058#Files)
|pass|
pass[Novak2022.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001058#Files)
|FAIL|pass| -|[BIOMD0000001059](https://www.ebi.ac.uk/biomodels/BIOMD0000001059)
Stucki2005 - caspase-3 metabolism|
pass[Stucki2005.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001059#Files)
|pass|
pass[Stucki2005.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001059#Files)
|FAIL|pass| -|[BIOMD0000001060](https://www.ebi.ac.uk/biomodels/BIOMD0000001060)
Frank2021 - Macrophage polarization|
pass[Frank2021.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001060#Files)
|pass|
pass[Frank2021.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001060#Files)
|FAIL|pass| -|
[BIOMD0000001061](https://www.ebi.ac.uk/biomodels/BIOMD0000001061)
Canto-Encalada2022-FBA of simuCanto-Encalada2022-FBA of simultaneous degradation of ammonia and pollutants
|
pass[Canto-Encalada2022-FBA+of+simultaneous+degradation+of+ammonia+and+pollutants.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001061#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000001062](https://www.ebi.ac.uk/biomodels/BIOMD0000001062)
Kim2021 - Development of a GenKim2021 - Development of a Genome-Scale Metabolic Model and Phenome Analysis of the Probiotic Escherichia coli Strain Nissle 1917
|
pass[iDK1463.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001062#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000001063](https://www.ebi.ac.uk/biomodels/BIOMD0000001063)
Lu2019 - Genome scale metaboliLu2019 - Genome scale metabolic model for Saccharomyces cerevisiae - yeastGEM8.5.0
|
pass[yeast-GEM.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001063#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000001064](https://www.ebi.ac.uk/biomodels/BIOMD0000001064)
Kim2011 - the genome scale recKim2011 - the genome scale reconstruction of the Vibrio vulnificus metabolic network - VvuMBEL943
|
pass[Kim2011_VvuMBEL943.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001064#Files)
|pass|NoSEDML|NA|NA| -|
[BIOMD0000001065](https://www.ebi.ac.uk/biomodels/BIOMD0000001065)
vonDassow2000 - Segment PolarivonDassow2000 - Segment Polarity Network model on 1x4 grid of cells
|
FAIL[vonDassow2000_1x4.timecourse1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001065#Files)
|FAIL|NoSEDML|NA|NA| -|
[BIOMD0000001066](https://www.ebi.ac.uk/biomodels/BIOMD0000001066)
Chowell2022 - Random Forest moChowell2022 - Random Forest model to predict efficacy of immune checkpoint blockade across multiple cancer patient cohorts
|
NonSBMLOpen Neural Network Exchange:[{'name': 'RF16.onnx', 'fileSize': '1889619'}]
|NA|NA|NA|NA| -|
[BIOMD0000001067](https://www.ebi.ac.uk/biomodels/BIOMD0000001067)
Deshpande2019 - Random Forest Deshpande2019 - Random Forest model to predict long non-coding RNAs from coding RNAs in Zea Mays plant transcriptomic data
|
NonSBMLOpen Neural Network Exchange:[{'name': 'zmays_trained_model.onnx', 'fileSize': '35521903'}]
|NA|NA|NA|NA| -|
[BIOMD0000001068](https://www.ebi.ac.uk/biomodels/BIOMD0000001068)
Nassar2022 - Metagenomics ClasNassar2022 - Metagenomics Classification Task for Scientific Literature Text
|
NonSBMLOpen Neural Network Exchange:[{'name': 'doc2vec-model.onnx', 'fileSize': '865713'}]
|NA|NA|NA|NA| -|
[BIOMD0000001069](https://www.ebi.ac.uk/biomodels/BIOMD0000001069)
Alam2019 - Machine learning apAlam2019 - Machine learning approach of automatic identification and counting of blood cells
|
NonSBMLOpen Neural Network Exchange:[{'name': 'saved_model.onnx', 'fileSize': '63132297'}]
|NA|NA|NA|NA| -|
[BIOMD0000001070](https://www.ebi.ac.uk/biomodels/BIOMD0000001070)
Kong2022 - Conditional AntibodKong2022 - Conditional Antibody Design as 3D Equivariant Graph Translation
|
NonSBMLOther:[{'name': 'mean.Dockerfile', 'fileSize': '799'}]
|NA|NA|NA|NA| -|
[BIOMD0000001071](https://www.ebi.ac.uk/biomodels/BIOMD0000001071)
Wang2022 - Scaffolding proteinWang2022 - Scaffolding protein functional sites using deep learning
|
NonSBMLOther:[{'name': 'Dockerfile.txt', 'fileSize': '2612'}]
|NA|NA|NA|NA| -|
[BIOMD0000001072](https://www.ebi.ac.uk/biomodels/BIOMD0000001072)
Phillips2013 - physiologicallyPhillips2013 - physiologically based modeling explaining Mammalian rest/activity patterns
|
pass[Phillips2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001072#Files)
|FAIL|
pass[Phillips2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001072#Files)
|FAIL|pass| -|
[BIOMD0000001073](https://www.ebi.ac.uk/biomodels/BIOMD0000001073)
Patterson2022 - Tumour mutatioPatterson2022 - Tumour mutation data driven Random Forest model to predict immune checkpoint inhibitor therapy benefit in metastatic melanoma
|
NonSBMLOpen Neural Network Exchange:[{'name': 'rforest_ROLP.onnx', 'fileSize': '80528'}]
|NA|NA|NA|NA| -|
[BIOMD0000001074](https://www.ebi.ac.uk/biomodels/BIOMD0000001074)
Liu2023 - Predicting the efficLiu2023 - Predicting the efficacy of immune checkpoint inhibitors monotherapy in advanced non-small cell lung cancer: a machine learning method based on multidimensional data
|
NonSBMLOpen Neural Network Exchange:[{'name': 'rf_ici.onnx', 'fileSize': '37866'}]
|NA|NA|NA|NA| -|
[BIOMD0000001075](https://www.ebi.ac.uk/biomodels/BIOMD0000001075)
Sammut2022 - Multi-omic machinSammut2022 - Multi-omic machine learning model to predict pathological complete response for breast cancer neoadjuvant therapy
|
NonSBMLOther:[{'name': 'reproduced_trained_models.zip', 'fileSize': '87786133'}]
|NA|NA|NA|NA| -|
[BIOMD0000001076](https://www.ebi.ac.uk/biomodels/BIOMD0000001076)
López-Cortés2020 - Prediction López-Cortés2020 - Prediction of Breast Cancer (BC) proteins involved in cancer immunotherapy using molecular descriptors and Multi Layer Perceptron (MLP) neural network
|
NonSBMLOpen Neural Network Exchange:[{'name': 'MLP_model3.onnx', 'fileSize': '25518'}]
|NA|NA|NA|NA| -|
[BIOMD0000001077](https://www.ebi.ac.uk/biomodels/BIOMD0000001077)
Adlung2021 - Cell-to-cell variAdlung2021 - Cell-to-cell variability in JAK2/STAT5 pathway
|
pass[Adlung2021 _model_jakstat_pa.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001077#Files)
|pass|
pass[Adlung2021 _model_jakstat_pa.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001077#Files)
|FAIL|pass| -|[BIOMD0000001078](https://www.ebi.ac.uk/biomodels/BIOMD0000001078)
Hammaren-Geissen2022_PPToP_Model12|
pass[Hammaren-Geissen2022_PPToP_Model12_withParameterSets.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001078#Files)
|pass|
pass[Hammaren-Geissen2022_PPToP_Model12_withParameterSets.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001078#Files)
|FAIL|pass| -|
[BIOMD0000001079](https://www.ebi.ac.uk/biomodels/BIOMD0000001079)
DeBoeck2021 - Modular approachDeBoeck2021 - Modular approach to modeling the cell cycle, simple cell cycle model
|
pass[DeBoeck2021_cellcycle_bistableapc.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001079#Files)
|pass|
pass[DeBoeck2021_cellcycle_bistableapc.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001079#Files)
|FAIL|pass| -|
[BIOMD0000001080](https://www.ebi.ac.uk/biomodels/BIOMD0000001080)
DeBoeck2021 - Modular approachDeBoeck2021 - Modular approach to modeling the cell cycle, 5 ODE model with 3 bistable switches
|
pass[DeBoeck2021_cellcycle_threeswitches.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001080#Files)
|pass|
pass[DeBoeck2021_cellcycle_threeswitches.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001080#Files)
|FAIL|pass| +|Model|valid-sbml|valid-sbml-units|valid-sedml|broken-ref|tellurium|tellurium-remote|copasi-remote| +|---|---|---|---|---|---|---|---| +|n=1026|
pass=1015 FAIL=11n_FAIL=2 n_NonSBML=9
|pass=760 NA=9 FAIL=257|
pass=939 NA=9 FAIL=78n_FAIL=10 n_MultipleSEDMLs=62 n_NoSEDML=6
|pass=949 NA=77|
pass=558 NA=77 FAIL=391n_SEDMLfile=10 n_delay=6 n_other=374 n_CV_CONV_FAILURE=1
|
pass=924 NA=77 FAIL=25n_FAIL=22 n_ERROR=3
|
pass=921 NA=77 FAIL=28n_FAIL=27 n_ERROR=1
| +|[BIOMD0000000001](https://www.ebi.ac.uk/biomodels/BIOMD0000000001)
Edelstein1996 - EPSP ACh event|
pass[BIOMD0000000001_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000001#Files)
|pass|
pass[BIOMD0000000001_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000001#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752c9fbc3054f763d54f26a/download

Logs: https://api.biosimulations.org/logs/6752c9fbc3054f763d54f26a?includeOutput=true

View: https://api.biosimulations.org/runs/6752c9fbc3054f763d54f26a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752c9f9c3054f763d54f267/download

Logs: https://api.biosimulations.org/logs/6752c9f9c3054f763d54f267?includeOutput=true

View: https://api.biosimulations.org/runs/6752c9f9c3054f763d54f267

HTTP response: 201
| +|[BIOMD0000000002](https://www.ebi.ac.uk/biomodels/BIOMD0000000002)
Edelstein1996 - EPSP ACh species|
pass[BIOMD0000000002_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000002#Files)
|pass|
pass[BIOMD0000000002_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000002#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ca13707aa641045e9936/download

Logs: https://api.biosimulations.org/logs/6752ca13707aa641045e9936?includeOutput=true

View: https://api.biosimulations.org/runs/6752ca13707aa641045e9936

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ca10c3054f763d54f27d/download

Logs: https://api.biosimulations.org/logs/6752ca10c3054f763d54f27d?includeOutput=true

View: https://api.biosimulations.org/runs/6752ca10c3054f763d54f27d

HTTP response: 201
| +|[BIOMD0000000003](https://www.ebi.ac.uk/biomodels/BIOMD0000000003)
Goldbeter1991 - Min Mit Oscil|
pass[BIOMD0000000003_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000003#Files)
|pass|
pass[BIOMD0000000003_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000003#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cbaf9fa297efdca18c72/download

Logs: https://api.biosimulations.org/logs/6752cbaf9fa297efdca18c72?includeOutput=true

View: https://api.biosimulations.org/runs/6752cbaf9fa297efdca18c72

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cbacc3054f763d54f2bf/download

Logs: https://api.biosimulations.org/logs/6752cbacc3054f763d54f2bf?includeOutput=true

View: https://api.biosimulations.org/runs/6752cbacc3054f763d54f2bf

HTTP response: 201
| +|
[BIOMD0000000004](https://www.ebi.ac.uk/biomodels/BIOMD0000000004)
Goldbeter1991 - Min Mit Oscil,Goldbeter1991 - Min Mit Oscil, Expl Inact
|
pass[BIOMD0000000004_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000004#Files)
|pass|
pass[BIOMD0000000004_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000004#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cbc3c3054f763d54f2d3/download

Logs: https://api.biosimulations.org/logs/6752cbc3c3054f763d54f2d3?includeOutput=true

View: https://api.biosimulations.org/runs/6752cbc3c3054f763d54f2d3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cbc1c3054f763d54f2d0/download

Logs: https://api.biosimulations.org/logs/6752cbc1c3054f763d54f2d0?includeOutput=true

View: https://api.biosimulations.org/runs/6752cbc1c3054f763d54f2d0

HTTP response: 201
| +|[BIOMD0000000005](https://www.ebi.ac.uk/biomodels/BIOMD0000000005)
Tyson1991 - Cell Cycle 6 var|
pass[BIOMD0000000005_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000005#Files)
|pass|
pass[BIOMD0000000005.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000005#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cbd8707aa641045e99b7/download

Logs: https://api.biosimulations.org/logs/6752cbd8707aa641045e99b7?includeOutput=true

View: https://api.biosimulations.org/runs/6752cbd8707aa641045e99b7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cbd69fa297efdca18c9b/download

Logs: https://api.biosimulations.org/logs/6752cbd69fa297efdca18c9b?includeOutput=true

View: https://api.biosimulations.org/runs/6752cbd69fa297efdca18c9b

HTTP response: 201
| +|[BIOMD0000000006](https://www.ebi.ac.uk/biomodels/BIOMD0000000006)
Tyson1991 - Cell Cycle 2 var|
pass[BIOMD0000000006_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000006#Files)
|pass|
pass[BIOMD0000000006_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000006#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cbed9fa297efdca18cab/download

Logs: https://api.biosimulations.org/logs/6752cbed9fa297efdca18cab?includeOutput=true

View: https://api.biosimulations.org/runs/6752cbed9fa297efdca18cab

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cbeb707aa641045e99cb/download

Logs: https://api.biosimulations.org/logs/6752cbeb707aa641045e99cb?includeOutput=true

View: https://api.biosimulations.org/runs/6752cbeb707aa641045e99cb

HTTP response: 201
| +|[BIOMD0000000007](https://www.ebi.ac.uk/biomodels/BIOMD0000000007)
Novak1997 - Cell Cycle|
pass[BIOMD0000000007_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000007#Files)
|pass|
pass[BIOMD0000000007_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000007#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cc019fa297efdca18cc2/download

Logs: https://api.biosimulations.org/logs/6752cc019fa297efdca18cc2?includeOutput=true

View: https://api.biosimulations.org/runs/6752cc019fa297efdca18cc2

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cbffc3054f763d54f30b/download

Logs: https://api.biosimulations.org/logs/6752cbffc3054f763d54f30b?includeOutput=true

View: https://api.biosimulations.org/runs/6752cbffc3054f763d54f30b

HTTP response: 201
| +|[BIOMD0000000008](https://www.ebi.ac.uk/biomodels/BIOMD0000000008)
Gardner1998 - Cell Cycle Goldbeter|
pass[BIOMD0000000008_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000008#Files)
|pass|
pass[BIOMD0000000008_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000008#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cc17707aa641045e99f6/download

Logs: https://api.biosimulations.org/logs/6752cc17707aa641045e99f6?includeOutput=true

View: https://api.biosimulations.org/runs/6752cc17707aa641045e99f6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cc15c3054f763d54f31a/download

Logs: https://api.biosimulations.org/logs/6752cc15c3054f763d54f31a?includeOutput=true

View: https://api.biosimulations.org/runs/6752cc15c3054f763d54f31a

HTTP response: 201
| +|
[BIOMD0000000009](https://www.ebi.ac.uk/biomodels/BIOMD0000000009)
Huang1996 - Ultrasensitivity iHuang1996 - Ultrasensitivity in MAPK cascade
|
pass[BIOMD0000000009_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000009#Files)
|FAIL|
pass[BIOMD0000000009_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000009#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cc299fa297efdca18cff/download

Logs: https://api.biosimulations.org/logs/6752cc299fa297efdca18cff?includeOutput=true

View: https://api.biosimulations.org/runs/6752cc299fa297efdca18cff

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cc27c3054f763d54f323/download

Logs: https://api.biosimulations.org/logs/6752cc27c3054f763d54f323?includeOutput=true

View: https://api.biosimulations.org/runs/6752cc27c3054f763d54f323

HTTP response: 201
| +|
[BIOMD0000000010](https://www.ebi.ac.uk/biomodels/BIOMD0000000010)
Kholodenko2000 - UltrasensitivKholodenko2000 - Ultrasensitivity and negative feedback bring oscillations in MAPK cascade
|
pass[BIOMD0000000010_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000010#Files)
|pass|
FAIL[BIOMD0000000010_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000010#Files)
|pass|
SEDMLfile```failed to validate SEDML file BIOMD0000000010_url.sedml```
|
FAILDownload: https://api.biosimulations.org/results/6752cc3ec3054f763d54f342/download

Logs: https://api.biosimulations.org/logs/6752cc3ec3054f763d54f342?includeOutput=true

View: https://api.biosimulations.org/runs/6752cc3ec3054f763d54f342

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to process a change to model 'kholodenko_b' with the target /sbml:sbml/sbml:model/sbml:listOfReactions/sbml:reaction[@id='J0']/sbml:kineticLaw/sbml:listOfParameters/sbml:parameter[@id='n']/@value because changing local parameters is not yet implemented.

Exception type: CombineArchiveExecutionError
|
passDownload: https://api.biosimulations.org/results/6752cc3c707aa641045e9a14/download

Logs: https://api.biosimulations.org/logs/6752cc3c707aa641045e9a14?includeOutput=true

View: https://api.biosimulations.org/runs/6752cc3c707aa641045e9a14

HTTP response: 201
| +|[BIOMD0000000011](https://www.ebi.ac.uk/biomodels/BIOMD0000000011)
Levchenko2000_MAPK_noScaffold|
pass[BIOMD0000000011_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000011#Files)
|pass|
pass[BIOMD0000000011_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000011#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cc54c3054f763d54f364/download

Logs: https://api.biosimulations.org/logs/6752cc54c3054f763d54f364?includeOutput=true

View: https://api.biosimulations.org/runs/6752cc54c3054f763d54f364

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cc52c3054f763d54f361/download

Logs: https://api.biosimulations.org/logs/6752cc52c3054f763d54f361?includeOutput=true

View: https://api.biosimulations.org/runs/6752cc52c3054f763d54f361

HTTP response: 201
| +|[BIOMD0000000012](https://www.ebi.ac.uk/biomodels/BIOMD0000000012)
Elowitz2000 - Repressilator|
pass[BIOMD0000000012_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000012#Files)
|pass|
pass[BIOMD0000000012_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000012#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cc69707aa641045e9a3f/download

Logs: https://api.biosimulations.org/logs/6752cc69707aa641045e9a3f?includeOutput=true

View: https://api.biosimulations.org/runs/6752cc69707aa641045e9a3f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cc679fa297efdca18d36/download

Logs: https://api.biosimulations.org/logs/6752cc679fa297efdca18d36?includeOutput=true

View: https://api.biosimulations.org/runs/6752cc679fa297efdca18d36

HTTP response: 201
| +|[BIOMD0000000013](https://www.ebi.ac.uk/biomodels/BIOMD0000000013)
Poolman2004_CalvinCycle|
pass[BIOMD0000000013_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000013#Files)
|pass|
pass[BIOMD0000000013_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000013#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cc7f707aa641045e9a56/download

Logs: https://api.biosimulations.org/logs/6752cc7f707aa641045e9a56?includeOutput=true

View: https://api.biosimulations.org/runs/6752cc7f707aa641045e9a56

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cc7cc3054f763d54f38d/download

Logs: https://api.biosimulations.org/logs/6752cc7cc3054f763d54f38d?includeOutput=true

View: https://api.biosimulations.org/runs/6752cc7cc3054f763d54f38d

HTTP response: 201
| +|[BIOMD0000000014](https://www.ebi.ac.uk/biomodels/BIOMD0000000014)
Levchenko2000_MAPK_Scaffold|
pass[BIOMD0000000014_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000014#Files)
|pass|
pass[BIOMD0000000014_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000014#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cc95c3054f763d54f3a7/download

Logs: https://api.biosimulations.org/logs/6752cc95c3054f763d54f3a7?includeOutput=true

View: https://api.biosimulations.org/runs/6752cc95c3054f763d54f3a7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cc92c3054f763d54f3a4/download

Logs: https://api.biosimulations.org/logs/6752cc92c3054f763d54f3a4?includeOutput=true

View: https://api.biosimulations.org/runs/6752cc92c3054f763d54f3a4

HTTP response: 201
| +|[BIOMD0000000015](https://www.ebi.ac.uk/biomodels/BIOMD0000000015)
Curto1998 - purine metabolism|
pass[BIOMD0000000015_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000015#Files)
|FAIL|
pass[BIOMD0000000015_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000015#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ccb2c3054f763d54f3b8/download

Logs: https://api.biosimulations.org/logs/6752ccb2c3054f763d54f3b8?includeOutput=true

View: https://api.biosimulations.org/runs/6752ccb2c3054f763d54f3b8

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ccaf9fa297efdca18d6f/download

Logs: https://api.biosimulations.org/logs/6752ccaf9fa297efdca18d6f?includeOutput=true

View: https://api.biosimulations.org/runs/6752ccaf9fa297efdca18d6f

HTTP response: 201
| +|[BIOMD0000000016](https://www.ebi.ac.uk/biomodels/BIOMD0000000016)
Goldbeter1995_CircClock|
pass[BIOMD0000000016_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000016#Files)
|pass|
pass[BIOMD0000000016_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000016#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ccc6c3054f763d54f3c8/download

Logs: https://api.biosimulations.org/logs/6752ccc6c3054f763d54f3c8?includeOutput=true

View: https://api.biosimulations.org/runs/6752ccc6c3054f763d54f3c8

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ccc4707aa641045e9a9f/download

Logs: https://api.biosimulations.org/logs/6752ccc4707aa641045e9a9f?includeOutput=true

View: https://api.biosimulations.org/runs/6752ccc4707aa641045e9a9f

HTTP response: 201
| +|[BIOMD0000000017](https://www.ebi.ac.uk/biomodels/BIOMD0000000017)
Hoefnagel2002_PyruvateBranches|
pass[BIOMD0000000017_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000017#Files)
|pass|
pass[BIOMD0000000017_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000017#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ccdb9fa297efdca18d9a/download

Logs: https://api.biosimulations.org/logs/6752ccdb9fa297efdca18d9a?includeOutput=true

View: https://api.biosimulations.org/runs/6752ccdb9fa297efdca18d9a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ccd9c3054f763d54f3da/download

Logs: https://api.biosimulations.org/logs/6752ccd9c3054f763d54f3da?includeOutput=true

View: https://api.biosimulations.org/runs/6752ccd9c3054f763d54f3da

HTTP response: 201
| +|[BIOMD0000000018](https://www.ebi.ac.uk/biomodels/BIOMD0000000018)
Morrison1989 - Folate Cycle|
pass[BIOMD0000000018_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000018#Files)
|pass|
pass[BIOMD0000000018_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000018#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ccf0707aa641045e9add/download

Logs: https://api.biosimulations.org/logs/6752ccf0707aa641045e9add?includeOutput=true

View: https://api.biosimulations.org/runs/6752ccf0707aa641045e9add

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ccee707aa641045e9ada/download

Logs: https://api.biosimulations.org/logs/6752ccee707aa641045e9ada?includeOutput=true

View: https://api.biosimulations.org/runs/6752ccee707aa641045e9ada

HTTP response: 201
| +|[BIOMD0000000019](https://www.ebi.ac.uk/biomodels/BIOMD0000000019)
Schoeberl2002 - EGF MAPK|
pass[BIOMD0000000019_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000019#Files)
|pass|
pass[BIOMD0000000019_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000019#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cd06c3054f763d54f404/download

Logs: https://api.biosimulations.org/logs/6752cd06c3054f763d54f404?includeOutput=true

View: https://api.biosimulations.org/runs/6752cd06c3054f763d54f404

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cd04c3054f763d54f401/download

Logs: https://api.biosimulations.org/logs/6752cd04c3054f763d54f401?includeOutput=true

View: https://api.biosimulations.org/runs/6752cd04c3054f763d54f401

HTTP response: 201
| +|[BIOMD0000000020](https://www.ebi.ac.uk/biomodels/BIOMD0000000020)
hodgkin-huxley squid-axon 1952|
pass[BIOMD0000000020_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000020#Files)
|pass|
pass[BIOMD0000000020_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000020#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cd229fa297efdca18ddb/download

Logs: https://api.biosimulations.org/logs/6752cd229fa297efdca18ddb?includeOutput=true

View: https://api.biosimulations.org/runs/6752cd229fa297efdca18ddb

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cd20707aa641045e9afe/download

Logs: https://api.biosimulations.org/logs/6752cd20707aa641045e9afe?includeOutput=true

View: https://api.biosimulations.org/runs/6752cd20707aa641045e9afe

HTTP response: 201
| +|[BIOMD0000000021](https://www.ebi.ac.uk/biomodels/BIOMD0000000021)
Leloup1999_CircClock|
pass[BIOMD0000000021_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000021#Files)
|pass|
pass[BIOMD0000000021_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000021#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cd36c3054f763d54f437/download

Logs: https://api.biosimulations.org/logs/6752cd36c3054f763d54f437?includeOutput=true

View: https://api.biosimulations.org/runs/6752cd36c3054f763d54f437

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cd349fa297efdca18dec/download

Logs: https://api.biosimulations.org/logs/6752cd349fa297efdca18dec?includeOutput=true

View: https://api.biosimulations.org/runs/6752cd349fa297efdca18dec

HTTP response: 201
| +|[BIOMD0000000022](https://www.ebi.ac.uk/biomodels/BIOMD0000000022)
Ueda2001_CircClock|
pass[BIOMD0000000022_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000022#Files)
|pass|
pass[BIOMD0000000022_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000022#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cd48707aa641045e9b46/download

Logs: https://api.biosimulations.org/logs/6752cd48707aa641045e9b46?includeOutput=true

View: https://api.biosimulations.org/runs/6752cd48707aa641045e9b46

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cd469fa297efdca18e07/download

Logs: https://api.biosimulations.org/logs/6752cd469fa297efdca18e07?includeOutput=true

View: https://api.biosimulations.org/runs/6752cd469fa297efdca18e07

HTTP response: 201
| +|[BIOMD0000000023](https://www.ebi.ac.uk/biomodels/BIOMD0000000023)
Rohwer2001_Sucrose|
pass[BIOMD0000000023_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000023#Files)
|pass|
pass[BIOMD0000000023_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000023#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cd5d9fa297efdca18e2e/download

Logs: https://api.biosimulations.org/logs/6752cd5d9fa297efdca18e2e?includeOutput=true

View: https://api.biosimulations.org/runs/6752cd5d9fa297efdca18e2e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cd5b9fa297efdca18e2b/download

Logs: https://api.biosimulations.org/logs/6752cd5b9fa297efdca18e2b?includeOutput=true

View: https://api.biosimulations.org/runs/6752cd5b9fa297efdca18e2b

HTTP response: 201
| +|[BIOMD0000000024](https://www.ebi.ac.uk/biomodels/BIOMD0000000024)
Scheper1999_CircClock|
pass[BIOMD0000000024_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000024#Files)
|pass|
pass[BIOMD0000000024_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000024#Files)
|pass|
delay```Unable to support delay differential equations. The function 'delay(M, parameter_0000009)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
|
FAILDownload: https://api.biosimulations.org/results/6752cd71707aa641045e9b6c/download

Logs: https://api.biosimulations.org/logs/6752cd71707aa641045e9b6c?includeOutput=true

View: https://api.biosimulations.org/runs/6752cd71707aa641045e9b6c

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(M, parameter_0000009)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)

Exception type: CombineArchiveExecutionError
|
passDownload: https://api.biosimulations.org/results/6752cd6f9fa297efdca18e4c/download

Logs: https://api.biosimulations.org/logs/6752cd6f9fa297efdca18e4c?includeOutput=true

View: https://api.biosimulations.org/runs/6752cd6f9fa297efdca18e4c

HTTP response: 201
| +|[BIOMD0000000025](https://www.ebi.ac.uk/biomodels/BIOMD0000000025)
Smolen2002_CircClock|
pass[BIOMD0000000025_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000025#Files)
|pass|
pass[BIOMD0000000025_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000025#Files)
|pass|
delay```Unable to support delay differential equations. The function 'delay(dClk, tau1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
|
FAILDownload: https://api.biosimulations.org/results/6752cd839fa297efdca18e69/download

Logs: https://api.biosimulations.org/logs/6752cd839fa297efdca18e69?includeOutput=true

View: https://api.biosimulations.org/runs/6752cd839fa297efdca18e69

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(dClk, tau1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)

Exception type: CombineArchiveExecutionError
|
passDownload: https://api.biosimulations.org/results/6752cd81707aa641045e9b77/download

Logs: https://api.biosimulations.org/logs/6752cd81707aa641045e9b77?includeOutput=true

View: https://api.biosimulations.org/runs/6752cd81707aa641045e9b77

HTTP response: 201
| +|[BIOMD0000000026](https://www.ebi.ac.uk/biomodels/BIOMD0000000026)
Markevich2004_MAPK_orderedElementary|
pass[BIOMD0000000026_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000026#Files)
|pass|
pass[BIOMD0000000026_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000026#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cd96707aa641045e9b8a/download

Logs: https://api.biosimulations.org/logs/6752cd96707aa641045e9b8a?includeOutput=true

View: https://api.biosimulations.org/runs/6752cd96707aa641045e9b8a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cd94c3054f763d54f4a0/download

Logs: https://api.biosimulations.org/logs/6752cd94c3054f763d54f4a0?includeOutput=true

View: https://api.biosimulations.org/runs/6752cd94c3054f763d54f4a0

HTTP response: 201
| +|
[BIOMD0000000027](https://www.ebi.ac.uk/biomodels/BIOMD0000000027)
Markevich2004 - MAPK double phMarkevich2004 - MAPK double phosphorylation, ordered Michaelis-Menton
|
pass[BIOMD0000000027_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000027#Files)
|pass|
pass[BIOMD0000000027_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000027#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cdaa9fa297efdca18e96/download

Logs: https://api.biosimulations.org/logs/6752cdaa9fa297efdca18e96?includeOutput=true

View: https://api.biosimulations.org/runs/6752cdaa9fa297efdca18e96

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cda8c3054f763d54f4c2/download

Logs: https://api.biosimulations.org/logs/6752cda8c3054f763d54f4c2?includeOutput=true

View: https://api.biosimulations.org/runs/6752cda8c3054f763d54f4c2

HTTP response: 201
| +|
[BIOMD0000000028](https://www.ebi.ac.uk/biomodels/BIOMD0000000028)
Markevich2004_MAPK_phosphoRandMarkevich2004_MAPK_phosphoRandomElementary
|
pass[BIOMD0000000028_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000028#Files)
|pass|
pass[BIOMD0000000028_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000028#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cdbb9fa297efdca18ea1/download

Logs: https://api.biosimulations.org/logs/6752cdbb9fa297efdca18ea1?includeOutput=true

View: https://api.biosimulations.org/runs/6752cdbb9fa297efdca18ea1

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cdb89fa297efdca18e9e/download

Logs: https://api.biosimulations.org/logs/6752cdb89fa297efdca18e9e?includeOutput=true

View: https://api.biosimulations.org/runs/6752cdb89fa297efdca18e9e

HTTP response: 201
| +|[BIOMD0000000029](https://www.ebi.ac.uk/biomodels/BIOMD0000000029)
Markevich2004_MAPK_phosphoRandomMM|
pass[BIOMD0000000029_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000029#Files)
|pass|
pass[BIOMD0000000029_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000029#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cdd0c3054f763d54f4e7/download

Logs: https://api.biosimulations.org/logs/6752cdd0c3054f763d54f4e7?includeOutput=true

View: https://api.biosimulations.org/runs/6752cdd0c3054f763d54f4e7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cdcd9fa297efdca18ebe/download

Logs: https://api.biosimulations.org/logs/6752cdcd9fa297efdca18ebe?includeOutput=true

View: https://api.biosimulations.org/runs/6752cdcd9fa297efdca18ebe

HTTP response: 201
| +|
[BIOMD0000000030](https://www.ebi.ac.uk/biomodels/BIOMD0000000030)
Markevich2004_MAPK_AllRandomElMarkevich2004_MAPK_AllRandomElementary
|
pass[BIOMD0000000030_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000030#Files)
|pass|
pass[BIOMD0000000030_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000030#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cde19fa297efdca18eca/download

Logs: https://api.biosimulations.org/logs/6752cde19fa297efdca18eca?includeOutput=true

View: https://api.biosimulations.org/runs/6752cde19fa297efdca18eca

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cddfc3054f763d54f4f7/download

Logs: https://api.biosimulations.org/logs/6752cddfc3054f763d54f4f7?includeOutput=true

View: https://api.biosimulations.org/runs/6752cddfc3054f763d54f4f7

HTTP response: 201
| +|[BIOMD0000000031](https://www.ebi.ac.uk/biomodels/BIOMD0000000031)
Markevich2004_MAPK_orderedMM2kinases|
pass[BIOMD0000000031_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000031#Files)
|pass|
pass[BIOMD0000000031_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000031#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cdf6707aa641045e9bf3/download

Logs: https://api.biosimulations.org/logs/6752cdf6707aa641045e9bf3?includeOutput=true

View: https://api.biosimulations.org/runs/6752cdf6707aa641045e9bf3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cdf49fa297efdca18ee3/download

Logs: https://api.biosimulations.org/logs/6752cdf49fa297efdca18ee3?includeOutput=true

View: https://api.biosimulations.org/runs/6752cdf49fa297efdca18ee3

HTTP response: 201
| +|[BIOMD0000000032](https://www.ebi.ac.uk/biomodels/BIOMD0000000032)
Kofahl2004_PheromonePathway|
pass[BIOMD0000000032_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000032#Files)
|pass|
pass[BIOMD0000000032_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000032#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ce0ac3054f763d54f525/download

Logs: https://api.biosimulations.org/logs/6752ce0ac3054f763d54f525?includeOutput=true

View: https://api.biosimulations.org/runs/6752ce0ac3054f763d54f525

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ce089fa297efdca18ef7/download

Logs: https://api.biosimulations.org/logs/6752ce089fa297efdca18ef7?includeOutput=true

View: https://api.biosimulations.org/runs/6752ce089fa297efdca18ef7

HTTP response: 201
| +|[BIOMD0000000033](https://www.ebi.ac.uk/biomodels/BIOMD0000000033)
Brown2004 - NGF and EGF signaling|
pass[BIOMD0000000033_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000033#Files)
|pass|
pass[BIOMD0000000033_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000033#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ce22707aa641045e9c29/download

Logs: https://api.biosimulations.org/logs/6752ce22707aa641045e9c29?includeOutput=true

View: https://api.biosimulations.org/runs/6752ce22707aa641045e9c29

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ce20c3054f763d54f531/download

Logs: https://api.biosimulations.org/logs/6752ce20c3054f763d54f531?includeOutput=true

View: https://api.biosimulations.org/runs/6752ce20c3054f763d54f531

HTTP response: 201
| +|[BIOMD0000000034](https://www.ebi.ac.uk/biomodels/BIOMD0000000034)
Smolen2004_CircClock|
pass[BIOMD0000000034_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000034#Files)
|pass|
pass[BIOMD0000000034_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000034#Files)
|pass|
delay```Unable to support delay differential equations. The function 'delay(parameter_0000029 * parameter_0000022 + parameter_0000034, parameter_0000039)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
|
FAILDownload: https://api.biosimulations.org/results/6752ce38c3054f763d54f555/download

Logs: https://api.biosimulations.org/logs/6752ce38c3054f763d54f555?includeOutput=true

View: https://api.biosimulations.org/runs/6752ce38c3054f763d54f555

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(parameter_0000029 * parameter_0000022 + parameter_0000034, parameter_0000039)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)

Exception type: CombineArchiveExecutionError
|
passDownload: https://api.biosimulations.org/results/6752ce36707aa641045e9c3e/download

Logs: https://api.biosimulations.org/logs/6752ce36707aa641045e9c3e?includeOutput=true

View: https://api.biosimulations.org/runs/6752ce36707aa641045e9c3e

HTTP response: 201
| +|[BIOMD0000000035](https://www.ebi.ac.uk/biomodels/BIOMD0000000035)
Vilar2002_Oscillator|
pass[BIOMD0000000035_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000035#Files)
|pass|
pass[BIOMD0000000035_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000035#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ce4b707aa641045e9c4f/download

Logs: https://api.biosimulations.org/logs/6752ce4b707aa641045e9c4f?includeOutput=true

View: https://api.biosimulations.org/runs/6752ce4b707aa641045e9c4f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ce499fa297efdca18f1f/download

Logs: https://api.biosimulations.org/logs/6752ce499fa297efdca18f1f?includeOutput=true

View: https://api.biosimulations.org/runs/6752ce499fa297efdca18f1f

HTTP response: 201
| +|[BIOMD0000000036](https://www.ebi.ac.uk/biomodels/BIOMD0000000036)
Tyson1999_CircClock|
pass[BIOMD0000000036_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000036#Files)
|pass|
pass[BIOMD0000000036_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000036#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ce5fc3054f763d54f58b/download

Logs: https://api.biosimulations.org/logs/6752ce5fc3054f763d54f58b?includeOutput=true

View: https://api.biosimulations.org/runs/6752ce5fc3054f763d54f58b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ce5dc3054f763d54f588/download

Logs: https://api.biosimulations.org/logs/6752ce5dc3054f763d54f588?includeOutput=true

View: https://api.biosimulations.org/runs/6752ce5dc3054f763d54f588

HTTP response: 201
| +|
[BIOMD0000000037](https://www.ebi.ac.uk/biomodels/BIOMD0000000037)
Marwan2003 - Genetics, regulatMarwan2003 - Genetics, regulatory hierarchy between genes
|
pass[BIOMD0000000037_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000037#Files)
|pass|
pass[BIOMD0000000037_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000037#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ce739fa297efdca18f4c/download

Logs: https://api.biosimulations.org/logs/6752ce739fa297efdca18f4c?includeOutput=true

View: https://api.biosimulations.org/runs/6752ce739fa297efdca18f4c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ce71707aa641045e9c76/download

Logs: https://api.biosimulations.org/logs/6752ce71707aa641045e9c76?includeOutput=true

View: https://api.biosimulations.org/runs/6752ce71707aa641045e9c76

HTTP response: 201
| +|[BIOMD0000000038](https://www.ebi.ac.uk/biomodels/BIOMD0000000038)
Rohwer2000_Phosphotransferase_System|
pass[BIOMD0000000038_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000038#Files)
|pass|
pass[BIOMD0000000038_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000038#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ce889fa297efdca18f5d/download

Logs: https://api.biosimulations.org/logs/6752ce889fa297efdca18f5d?includeOutput=true

View: https://api.biosimulations.org/runs/6752ce889fa297efdca18f5d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ce86c3054f763d54f5b2/download

Logs: https://api.biosimulations.org/logs/6752ce86c3054f763d54f5b2?includeOutput=true

View: https://api.biosimulations.org/runs/6752ce86c3054f763d54f5b2

HTTP response: 201
| +|[BIOMD0000000039](https://www.ebi.ac.uk/biomodels/BIOMD0000000039)
Marhl2000_CaOscillations|
pass[BIOMD0000000039_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000039#Files)
|pass|
pass[BIOMD0000000039_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000039#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ce9b707aa641045e9ca7/download

Logs: https://api.biosimulations.org/logs/6752ce9b707aa641045e9ca7?includeOutput=true

View: https://api.biosimulations.org/runs/6752ce9b707aa641045e9ca7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ce999fa297efdca18f6a/download

Logs: https://api.biosimulations.org/logs/6752ce999fa297efdca18f6a?includeOutput=true

View: https://api.biosimulations.org/runs/6752ce999fa297efdca18f6a

HTTP response: 201
| +|[BIOMD0000000040](https://www.ebi.ac.uk/biomodels/BIOMD0000000040)
Field1974_Oregonator|
pass[BIOMD0000000040_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000040#Files)
|pass|
pass[BIOMD0000000040_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000040#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ceaf707aa641045e9cba/download

Logs: https://api.biosimulations.org/logs/6752ceaf707aa641045e9cba?includeOutput=true

View: https://api.biosimulations.org/runs/6752ceaf707aa641045e9cba

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cead707aa641045e9cb2/download

Logs: https://api.biosimulations.org/logs/6752cead707aa641045e9cb2?includeOutput=true

View: https://api.biosimulations.org/runs/6752cead707aa641045e9cb2

HTTP response: 201
| +|
[BIOMD0000000041](https://www.ebi.ac.uk/biomodels/BIOMD0000000041)
Kongas2007 - Creatine Kinase iKongas2007 - Creatine Kinase in energy metabolic signaling in muscle
|
pass[BIOMD0000000041_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000041#Files)
|pass|
pass[BIOMD0000000041_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000041#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cec3c3054f763d54f5e8/download

Logs: https://api.biosimulations.org/logs/6752cec3c3054f763d54f5e8?includeOutput=true

View: https://api.biosimulations.org/runs/6752cec3c3054f763d54f5e8

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cec09fa297efdca18f98/download

Logs: https://api.biosimulations.org/logs/6752cec09fa297efdca18f98?includeOutput=true

View: https://api.biosimulations.org/runs/6752cec09fa297efdca18f98

HTTP response: 201
| +|[BIOMD0000000042](https://www.ebi.ac.uk/biomodels/BIOMD0000000042)
Nielsen1998_Glycolysis|
pass[BIOMD0000000042_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000042#Files)
|pass|
pass[BIOMD0000000042.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000042#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6752ced7c3054f763d54f600/download

Logs: https://api.biosimulations.org/logs/6752ced7c3054f763d54f600?includeOutput=true

View: https://api.biosimulations.org/runs/6752ced7c3054f763d54f600

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ced4c3054f763d54f5fd/download

Logs: https://api.biosimulations.org/logs/6752ced4c3054f763d54f5fd?includeOutput=true

View: https://api.biosimulations.org/runs/6752ced4c3054f763d54f5fd

HTTP response: 201
| +|
[BIOMD0000000043](https://www.ebi.ac.uk/biomodels/BIOMD0000000043)
Borghans1997 - Calcium OscillaBorghans1997 - Calcium Oscillation - Model 1
|
pass[BIOMD0000000043_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000043#Files)
|pass|
pass[BIOMD0000000043_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000043#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ceebc3054f763d54f61c/download

Logs: https://api.biosimulations.org/logs/6752ceebc3054f763d54f61c?includeOutput=true

View: https://api.biosimulations.org/runs/6752ceebc3054f763d54f61c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cee9707aa641045e9ce9/download

Logs: https://api.biosimulations.org/logs/6752cee9707aa641045e9ce9?includeOutput=true

View: https://api.biosimulations.org/runs/6752cee9707aa641045e9ce9

HTTP response: 201
| +|
[BIOMD0000000044](https://www.ebi.ac.uk/biomodels/BIOMD0000000044)
Borghans1997 - Calcium OscillaBorghans1997 - Calcium Oscillation - Model 2
|
pass[BIOMD0000000044_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000044#Files)
|pass|
pass[BIOMD0000000044_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000044#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cefcc3054f763d54f621/download

Logs: https://api.biosimulations.org/logs/6752cefcc3054f763d54f621?includeOutput=true

View: https://api.biosimulations.org/runs/6752cefcc3054f763d54f621

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cefa707aa641045e9cf2/download

Logs: https://api.biosimulations.org/logs/6752cefa707aa641045e9cf2?includeOutput=true

View: https://api.biosimulations.org/runs/6752cefa707aa641045e9cf2

HTTP response: 201
| +|
[BIOMD0000000045](https://www.ebi.ac.uk/biomodels/BIOMD0000000045)
Borghans1997 - Calcium OscillaBorghans1997 - Calcium Oscillation - Model 3
|
pass[BIOMD0000000045_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000045#Files)
|pass|
pass[BIOMD0000000045_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000045#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cf10c3054f763d54f633/download

Logs: https://api.biosimulations.org/logs/6752cf10c3054f763d54f633?includeOutput=true

View: https://api.biosimulations.org/runs/6752cf10c3054f763d54f633

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cf0e707aa641045e9d0b/download

Logs: https://api.biosimulations.org/logs/6752cf0e707aa641045e9d0b?includeOutput=true

View: https://api.biosimulations.org/runs/6752cf0e707aa641045e9d0b

HTTP response: 201
| +|[BIOMD0000000046](https://www.ebi.ac.uk/biomodels/BIOMD0000000046)
Olsen2003_peroxidase|
pass[BIOMD0000000046_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000046#Files)
|pass|
pass[BIOMD0000000046_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000046#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cf26c3054f763d54f645/download

Logs: https://api.biosimulations.org/logs/6752cf26c3054f763d54f645?includeOutput=true

View: https://api.biosimulations.org/runs/6752cf26c3054f763d54f645

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cf249fa297efdca18ffe/download

Logs: https://api.biosimulations.org/logs/6752cf249fa297efdca18ffe?includeOutput=true

View: https://api.biosimulations.org/runs/6752cf249fa297efdca18ffe

HTTP response: 201
| +|[BIOMD0000000047](https://www.ebi.ac.uk/biomodels/BIOMD0000000047)
Oxhamre2005_Ca_oscillation|
pass[BIOMD0000000047_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000047#Files)
|pass|
pass[BIOMD0000000047_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000047#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cf3b9fa297efdca19027/download

Logs: https://api.biosimulations.org/logs/6752cf3b9fa297efdca19027?includeOutput=true

View: https://api.biosimulations.org/runs/6752cf3b9fa297efdca19027

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cf39707aa641045e9d38/download

Logs: https://api.biosimulations.org/logs/6752cf39707aa641045e9d38?includeOutput=true

View: https://api.biosimulations.org/runs/6752cf39707aa641045e9d38

HTTP response: 201
| +|[BIOMD0000000048](https://www.ebi.ac.uk/biomodels/BIOMD0000000048)
Kholodenko1999 - EGFR signaling|
pass[BIOMD0000000048_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000048#Files)
|pass|
pass[BIOMD0000000048_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000048#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cf4ec3054f763d54f66d/download

Logs: https://api.biosimulations.org/logs/6752cf4ec3054f763d54f66d?includeOutput=true

View: https://api.biosimulations.org/runs/6752cf4ec3054f763d54f66d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cf4c707aa641045e9d4d/download

Logs: https://api.biosimulations.org/logs/6752cf4c707aa641045e9d4d?includeOutput=true

View: https://api.biosimulations.org/runs/6752cf4c707aa641045e9d4d

HTTP response: 201
| +|[BIOMD0000000049](https://www.ebi.ac.uk/biomodels/BIOMD0000000049)
Sasagawa2005_MAPK|
pass[BIOMD0000000049_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000049#Files)
|pass|
pass[BIOMD0000000049_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000049#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cf65707aa641045e9d62/download

Logs: https://api.biosimulations.org/logs/6752cf65707aa641045e9d62?includeOutput=true

View: https://api.biosimulations.org/runs/6752cf65707aa641045e9d62

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cf639fa297efdca19052/download

Logs: https://api.biosimulations.org/logs/6752cf639fa297efdca19052?includeOutput=true

View: https://api.biosimulations.org/runs/6752cf639fa297efdca19052

HTTP response: 201
| +|[BIOMD0000000050](https://www.ebi.ac.uk/biomodels/BIOMD0000000050)
Martins2003_AmadoriDegradation|
pass[BIOMD0000000050_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000050#Files)
|pass|
pass[BIOMD0000000050_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000050#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cf80707aa641045e9d83/download

Logs: https://api.biosimulations.org/logs/6752cf80707aa641045e9d83?includeOutput=true

View: https://api.biosimulations.org/runs/6752cf80707aa641045e9d83

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cf7dc3054f763d54f68e/download

Logs: https://api.biosimulations.org/logs/6752cf7dc3054f763d54f68e?includeOutput=true

View: https://api.biosimulations.org/runs/6752cf7dc3054f763d54f68e

HTTP response: 201
| +|[BIOMD0000000051](https://www.ebi.ac.uk/biomodels/BIOMD0000000051)
Chassagnole2002_Carbon_Metabolism|
pass[BIOMD0000000051_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000051#Files)
|FAIL|
pass[BIOMD0000000051_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000051#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cf96707aa641045e9da5/download

Logs: https://api.biosimulations.org/logs/6752cf96707aa641045e9da5?includeOutput=true

View: https://api.biosimulations.org/runs/6752cf96707aa641045e9da5

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cf93c3054f763d54f6a0/download

Logs: https://api.biosimulations.org/logs/6752cf93c3054f763d54f6a0?includeOutput=true

View: https://api.biosimulations.org/runs/6752cf93c3054f763d54f6a0

HTTP response: 201
| +|
[BIOMD0000000052](https://www.ebi.ac.uk/biomodels/BIOMD0000000052)
Brands2002 - Monosaccharide-caBrands2002 - Monosaccharide-casein systems
|
pass[BIOMD0000000052_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000052#Files)
|pass|
pass[BIOMD0000000052_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000052#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cfab707aa641045e9dc3/download

Logs: https://api.biosimulations.org/logs/6752cfab707aa641045e9dc3?includeOutput=true

View: https://api.biosimulations.org/runs/6752cfab707aa641045e9dc3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cfa9c3054f763d54f6b0/download

Logs: https://api.biosimulations.org/logs/6752cfa9c3054f763d54f6b0?includeOutput=true

View: https://api.biosimulations.org/runs/6752cfa9c3054f763d54f6b0

HTTP response: 201
| +|[BIOMD0000000054](https://www.ebi.ac.uk/biomodels/BIOMD0000000054)
Ataullahkhanov1996_Adenylate|
pass[BIOMD0000000054_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000054#Files)
|pass|
pass[BIOMD0000000054_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000054#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cfbd707aa641045e9dd8/download

Logs: https://api.biosimulations.org/logs/6752cfbd707aa641045e9dd8?includeOutput=true

View: https://api.biosimulations.org/runs/6752cfbd707aa641045e9dd8

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cfbbc3054f763d54f6ba/download

Logs: https://api.biosimulations.org/logs/6752cfbbc3054f763d54f6ba?includeOutput=true

View: https://api.biosimulations.org/runs/6752cfbbc3054f763d54f6ba

HTTP response: 201
| +|[BIOMD0000000055](https://www.ebi.ac.uk/biomodels/BIOMD0000000055)
Locke2005 - Circadian Clock|
pass[BIOMD0000000055_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000055#Files)
|FAIL|
pass[BIOMD0000000055_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000055#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cfd0707aa641045e9df1/download

Logs: https://api.biosimulations.org/logs/6752cfd0707aa641045e9df1?includeOutput=true

View: https://api.biosimulations.org/runs/6752cfd0707aa641045e9df1

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cfce707aa641045e9dee/download

Logs: https://api.biosimulations.org/logs/6752cfce707aa641045e9dee?includeOutput=true

View: https://api.biosimulations.org/runs/6752cfce707aa641045e9dee

HTTP response: 201
| +|[BIOMD0000000056](https://www.ebi.ac.uk/biomodels/BIOMD0000000056)
Chen2004 - Cell Cycle Regulation|
pass[BIOMD0000000056_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000056#Files)
|pass|
pass[BIOMD0000000056_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000056#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cfe7c3054f763d54f6ea/download

Logs: https://api.biosimulations.org/logs/6752cfe7c3054f763d54f6ea?includeOutput=true

View: https://api.biosimulations.org/runs/6752cfe7c3054f763d54f6ea

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cfe4c3054f763d54f6e5/download

Logs: https://api.biosimulations.org/logs/6752cfe4c3054f763d54f6e5?includeOutput=true

View: https://api.biosimulations.org/runs/6752cfe4c3054f763d54f6e5

HTTP response: 201
| +|[BIOMD0000000057](https://www.ebi.ac.uk/biomodels/BIOMD0000000057)
Sneyd2002_IP3_Receptor|
pass[BIOMD0000000057_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000057#Files)
|pass|
pass[BIOMD0000000057_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000057#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752cfffc3054f763d54f705/download

Logs: https://api.biosimulations.org/logs/6752cfffc3054f763d54f705?includeOutput=true

View: https://api.biosimulations.org/runs/6752cfffc3054f763d54f705

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752cffdc3054f763d54f702/download

Logs: https://api.biosimulations.org/logs/6752cffdc3054f763d54f702?includeOutput=true

View: https://api.biosimulations.org/runs/6752cffdc3054f763d54f702

HTTP response: 201
| +|
[BIOMD0000000058](https://www.ebi.ac.uk/biomodels/BIOMD0000000058)
Bindschadler2001_coupled_Ca_osBindschadler2001_coupled_Ca_oscillators
|
pass[BIOMD0000000058_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000058#Files)
|pass|
pass[BIOMD0000000058_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000058#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d013c3054f763d54f722/download

Logs: https://api.biosimulations.org/logs/6752d013c3054f763d54f722?includeOutput=true

View: https://api.biosimulations.org/runs/6752d013c3054f763d54f722

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d011c3054f763d54f71f/download

Logs: https://api.biosimulations.org/logs/6752d011c3054f763d54f71f?includeOutput=true

View: https://api.biosimulations.org/runs/6752d011c3054f763d54f71f

HTTP response: 201
| +|[BIOMD0000000059](https://www.ebi.ac.uk/biomodels/BIOMD0000000059)
Fridlyand2003_Calcium_flux|
pass[BIOMD0000000059_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000059#Files)
|pass|
pass[BIOMD0000000059_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000059#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d028c3054f763d54f73b/download

Logs: https://api.biosimulations.org/logs/6752d028c3054f763d54f73b?includeOutput=true

View: https://api.biosimulations.org/runs/6752d028c3054f763d54f73b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d0269fa297efdca190ed/download

Logs: https://api.biosimulations.org/logs/6752d0269fa297efdca190ed?includeOutput=true

View: https://api.biosimulations.org/runs/6752d0269fa297efdca190ed

HTTP response: 201
| +|
[BIOMD0000000060](https://www.ebi.ac.uk/biomodels/BIOMD0000000060)
Keizer1996_Ryanodine_receptor_Keizer1996_Ryanodine_receptor_adaptation
|
pass[BIOMD0000000060_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000060#Files)
|FAIL|
pass[BIOMD0000000060_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000060#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d03d9fa297efdca19106/download

Logs: https://api.biosimulations.org/logs/6752d03d9fa297efdca19106?includeOutput=true

View: https://api.biosimulations.org/runs/6752d03d9fa297efdca19106

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d03b9fa297efdca19103/download

Logs: https://api.biosimulations.org/logs/6752d03b9fa297efdca19103?includeOutput=true

View: https://api.biosimulations.org/runs/6752d03b9fa297efdca19103

HTTP response: 201
| +|[BIOMD0000000061](https://www.ebi.ac.uk/biomodels/BIOMD0000000061)
Hynne2001_Glycolysis|
pass[BIOMD0000000061_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000061#Files)
|pass|
pass[BIOMD0000000061_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000061#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d04f9fa297efdca19123/download

Logs: https://api.biosimulations.org/logs/6752d04f9fa297efdca19123?includeOutput=true

View: https://api.biosimulations.org/runs/6752d04f9fa297efdca19123

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d04c9fa297efdca19119/download

Logs: https://api.biosimulations.org/logs/6752d04c9fa297efdca19119?includeOutput=true

View: https://api.biosimulations.org/runs/6752d04c9fa297efdca19119

HTTP response: 201
| +|[BIOMD0000000062](https://www.ebi.ac.uk/biomodels/BIOMD0000000062)
Bhartiya2003_Tryptophan_operon|
pass[BIOMD0000000062_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000062#Files)
|FAIL|
pass[BIOMD0000000062_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000062#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d063c3054f763d54f797/download

Logs: https://api.biosimulations.org/logs/6752d063c3054f763d54f797?includeOutput=true

View: https://api.biosimulations.org/runs/6752d063c3054f763d54f797

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d0619fa297efdca1913e/download

Logs: https://api.biosimulations.org/logs/6752d0619fa297efdca1913e?includeOutput=true

View: https://api.biosimulations.org/runs/6752d0619fa297efdca1913e

HTTP response: 201
| +|
[BIOMD0000000063](https://www.ebi.ac.uk/biomodels/BIOMD0000000063)
Galazzo1990_FermentationPathwaGalazzo1990_FermentationPathwayKinetics
|
pass[BIOMD0000000063_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000063#Files)
|FAIL|
pass[BIOMD0000000063_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000063#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d07a9fa297efdca19155/download

Logs: https://api.biosimulations.org/logs/6752d07a9fa297efdca19155?includeOutput=true

View: https://api.biosimulations.org/runs/6752d07a9fa297efdca19155

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d078707aa641045e9e9c/download

Logs: https://api.biosimulations.org/logs/6752d078707aa641045e9e9c?includeOutput=true

View: https://api.biosimulations.org/runs/6752d078707aa641045e9e9c

HTTP response: 201
| +|[BIOMD0000000064](https://www.ebi.ac.uk/biomodels/BIOMD0000000064)
Teusink2000_Glycolysis|
pass[BIOMD0000000064_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000064#Files)
|FAIL|
pass[BIOMD0000000064_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000064#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d08ec3054f763d54f7cb/download

Logs: https://api.biosimulations.org/logs/6752d08ec3054f763d54f7cb?includeOutput=true

View: https://api.biosimulations.org/runs/6752d08ec3054f763d54f7cb

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d08c9fa297efdca19165/download

Logs: https://api.biosimulations.org/logs/6752d08c9fa297efdca19165?includeOutput=true

View: https://api.biosimulations.org/runs/6752d08c9fa297efdca19165

HTTP response: 201
| +|[BIOMD0000000065](https://www.ebi.ac.uk/biomodels/BIOMD0000000065)
Yildirim2003_Lac_Operon|
pass[BIOMD0000000065_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000065#Files)
|pass|
pass[BIOMD0000000065_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000065#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d0a39fa297efdca1917b/download

Logs: https://api.biosimulations.org/logs/6752d0a39fa297efdca1917b?includeOutput=true

View: https://api.biosimulations.org/runs/6752d0a39fa297efdca1917b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d0a1c3054f763d54f7d3/download

Logs: https://api.biosimulations.org/logs/6752d0a1c3054f763d54f7d3?includeOutput=true

View: https://api.biosimulations.org/runs/6752d0a1c3054f763d54f7d3

HTTP response: 201
| +|[BIOMD0000000066](https://www.ebi.ac.uk/biomodels/BIOMD0000000066)
Chassagnole2001_Threonine Synthesis|
pass[BIOMD0000000066_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000066#Files)
|FAIL|
pass[BIOMD0000000066_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000066#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d0b7707aa641045e9ed9/download

Logs: https://api.biosimulations.org/logs/6752d0b7707aa641045e9ed9?includeOutput=true

View: https://api.biosimulations.org/runs/6752d0b7707aa641045e9ed9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d0b6c3054f763d54f7eb/download

Logs: https://api.biosimulations.org/logs/6752d0b6c3054f763d54f7eb?includeOutput=true

View: https://api.biosimulations.org/runs/6752d0b6c3054f763d54f7eb

HTTP response: 201
| +|[BIOMD0000000067](https://www.ebi.ac.uk/biomodels/BIOMD0000000067)
Fung2005_Metabolic_Oscillator|
pass[BIOMD0000000067_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000067#Files)
|pass|
pass[BIOMD0000000067_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000067#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d0ccc3054f763d54f809/download

Logs: https://api.biosimulations.org/logs/6752d0ccc3054f763d54f809?includeOutput=true

View: https://api.biosimulations.org/runs/6752d0ccc3054f763d54f809

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d0ca707aa641045e9efd/download

Logs: https://api.biosimulations.org/logs/6752d0ca707aa641045e9efd?includeOutput=true

View: https://api.biosimulations.org/runs/6752d0ca707aa641045e9efd

HTTP response: 201
| +|[BIOMD0000000068](https://www.ebi.ac.uk/biomodels/BIOMD0000000068)
Curien2003_MetThr_synthesis|
pass[BIOMD0000000068_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000068#Files)
|FAIL|
pass[BIOMD0000000068_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000068#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d0e19fa297efdca191bf/download

Logs: https://api.biosimulations.org/logs/6752d0e19fa297efdca191bf?includeOutput=true

View: https://api.biosimulations.org/runs/6752d0e19fa297efdca191bf

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d0df9fa297efdca191b6/download

Logs: https://api.biosimulations.org/logs/6752d0df9fa297efdca191b6?includeOutput=true

View: https://api.biosimulations.org/runs/6752d0df9fa297efdca191b6

HTTP response: 201
| +|[BIOMD0000000069](https://www.ebi.ac.uk/biomodels/BIOMD0000000069)
Fuss2006_MitoticActivation|
pass[BIOMD0000000069_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000069#Files)
|pass|
pass[BIOMD0000000069_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000069#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d0f4c3054f763d54f838/download

Logs: https://api.biosimulations.org/logs/6752d0f4c3054f763d54f838?includeOutput=true

View: https://api.biosimulations.org/runs/6752d0f4c3054f763d54f838

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d0f2c3054f763d54f830/download

Logs: https://api.biosimulations.org/logs/6752d0f2c3054f763d54f830?includeOutput=true

View: https://api.biosimulations.org/runs/6752d0f2c3054f763d54f830

HTTP response: 201
| +|
[BIOMD0000000070](https://www.ebi.ac.uk/biomodels/BIOMD0000000070)
Holzhutter2004_Erythrocyte_MetHolzhutter2004_Erythrocyte_Metabolism
|
pass[BIOMD0000000070_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000070#Files)
|FAIL|
pass[BIOMD0000000070_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000070#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d10b707aa641045e9f4e/download

Logs: https://api.biosimulations.org/logs/6752d10b707aa641045e9f4e?includeOutput=true

View: https://api.biosimulations.org/runs/6752d10b707aa641045e9f4e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d1099fa297efdca191db/download

Logs: https://api.biosimulations.org/logs/6752d1099fa297efdca191db?includeOutput=true

View: https://api.biosimulations.org/runs/6752d1099fa297efdca191db

HTTP response: 201
| +|[BIOMD0000000071](https://www.ebi.ac.uk/biomodels/BIOMD0000000071)
Bakker2001_Glycolysis|
pass[BIOMD0000000071_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000071#Files)
|FAIL|
pass[BIOMD0000000071_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000071#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d121c3054f763d54f85f/download

Logs: https://api.biosimulations.org/logs/6752d121c3054f763d54f85f?includeOutput=true

View: https://api.biosimulations.org/runs/6752d121c3054f763d54f85f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d11fc3054f763d54f85c/download

Logs: https://api.biosimulations.org/logs/6752d11fc3054f763d54f85c?includeOutput=true

View: https://api.biosimulations.org/runs/6752d11fc3054f763d54f85c

HTTP response: 201
| +|[BIOMD0000000072](https://www.ebi.ac.uk/biomodels/BIOMD0000000072)
Yi2003_GproteinCycle|
pass[BIOMD0000000072_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000072#Files)
|pass|
pass[BIOMD0000000072_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000072#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d1359fa297efdca19221/download

Logs: https://api.biosimulations.org/logs/6752d1359fa297efdca19221?includeOutput=true

View: https://api.biosimulations.org/runs/6752d1359fa297efdca19221

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d1339fa297efdca1921d/download

Logs: https://api.biosimulations.org/logs/6752d1339fa297efdca1921d?includeOutput=true

View: https://api.biosimulations.org/runs/6752d1339fa297efdca1921d

HTTP response: 201
| +|[BIOMD0000000073](https://www.ebi.ac.uk/biomodels/BIOMD0000000073)
Leloup2003_CircClock_DD|
pass[BIOMD0000000073_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000073#Files)
|pass|
pass[BIOMD0000000073_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000073#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d1499fa297efdca19235/download

Logs: https://api.biosimulations.org/logs/6752d1499fa297efdca19235?includeOutput=true

View: https://api.biosimulations.org/runs/6752d1499fa297efdca19235

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d147c3054f763d54f884/download

Logs: https://api.biosimulations.org/logs/6752d147c3054f763d54f884?includeOutput=true

View: https://api.biosimulations.org/runs/6752d147c3054f763d54f884

HTTP response: 201
| +|[BIOMD0000000074](https://www.ebi.ac.uk/biomodels/BIOMD0000000074)
Leloup2003_CircClock_DD_REV-ERBalpha|
pass[BIOMD0000000074_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000074#Files)
|pass|
pass[BIOMD0000000074_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000074#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d15fc3054f763d54f89a/download

Logs: https://api.biosimulations.org/logs/6752d15fc3054f763d54f89a?includeOutput=true

View: https://api.biosimulations.org/runs/6752d15fc3054f763d54f89a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d15cc3054f763d54f895/download

Logs: https://api.biosimulations.org/logs/6752d15cc3054f763d54f895?includeOutput=true

View: https://api.biosimulations.org/runs/6752d15cc3054f763d54f895

HTTP response: 201
| +|[BIOMD0000000075](https://www.ebi.ac.uk/biomodels/BIOMD0000000075)
Xu2003 - Phosphoinositide turnover|
pass[BIOMD0000000075_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000075#Files)
|FAIL|
pass[BIOMD0000000075_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000075#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d17a9fa297efdca19259/download

Logs: https://api.biosimulations.org/logs/6752d17a9fa297efdca19259?includeOutput=true

View: https://api.biosimulations.org/runs/6752d17a9fa297efdca19259

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d178c3054f763d54f8ac/download

Logs: https://api.biosimulations.org/logs/6752d178c3054f763d54f8ac?includeOutput=true

View: https://api.biosimulations.org/runs/6752d178c3054f763d54f8ac

HTTP response: 201
| +|[BIOMD0000000076](https://www.ebi.ac.uk/biomodels/BIOMD0000000076)
Cronwright2002_Glycerol_Synthesis|
pass[BIOMD0000000076_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000076#Files)
|pass|
pass[BIOMD0000000076_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000076#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d18e9fa297efdca19277/download

Logs: https://api.biosimulations.org/logs/6752d18e9fa297efdca19277?includeOutput=true

View: https://api.biosimulations.org/runs/6752d18e9fa297efdca19277

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d18c9fa297efdca19271/download

Logs: https://api.biosimulations.org/logs/6752d18c9fa297efdca19271?includeOutput=true

View: https://api.biosimulations.org/runs/6752d18c9fa297efdca19271

HTTP response: 201
| +|[BIOMD0000000077](https://www.ebi.ac.uk/biomodels/BIOMD0000000077)
Blum2000_LHsecretion_1|
pass[BIOMD0000000077_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000077#Files)
|pass|
pass[BIOMD0000000077_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000077#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d1a3707aa641045e9fc9/download

Logs: https://api.biosimulations.org/logs/6752d1a3707aa641045e9fc9?includeOutput=true

View: https://api.biosimulations.org/runs/6752d1a3707aa641045e9fc9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d1a19fa297efdca19293/download

Logs: https://api.biosimulations.org/logs/6752d1a19fa297efdca19293?includeOutput=true

View: https://api.biosimulations.org/runs/6752d1a19fa297efdca19293

HTTP response: 201
| +|[BIOMD0000000078](https://www.ebi.ac.uk/biomodels/BIOMD0000000078)
Leloup2003_CircClock_LD|
pass[BIOMD0000000078_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000078#Files)
|pass|
pass[BIOMD0000000078_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000078#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d1b7c3054f763d54f8f1/download

Logs: https://api.biosimulations.org/logs/6752d1b7c3054f763d54f8f1?includeOutput=true

View: https://api.biosimulations.org/runs/6752d1b7c3054f763d54f8f1

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d1b5707aa641045e9fdf/download

Logs: https://api.biosimulations.org/logs/6752d1b5707aa641045e9fdf?includeOutput=true

View: https://api.biosimulations.org/runs/6752d1b5707aa641045e9fdf

HTTP response: 201
| +|[BIOMD0000000079](https://www.ebi.ac.uk/biomodels/BIOMD0000000079)
Goldbeter2006_weightCycling|
pass[BIOMD0000000079_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000079#Files)
|FAIL|
pass[BIOMD0000000079_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000079#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d1cec3054f763d54f904/download

Logs: https://api.biosimulations.org/logs/6752d1cec3054f763d54f904?includeOutput=true

View: https://api.biosimulations.org/runs/6752d1cec3054f763d54f904

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d1cc9fa297efdca192b1/download

Logs: https://api.biosimulations.org/logs/6752d1cc9fa297efdca192b1?includeOutput=true

View: https://api.biosimulations.org/runs/6752d1cc9fa297efdca192b1

HTTP response: 201
| +|[BIOMD0000000080](https://www.ebi.ac.uk/biomodels/BIOMD0000000080)
Thomsen1989_AdenylateCyclase|
pass[BIOMD0000000080_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000080#Files)
|pass|
pass[BIOMD0000000080_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000080#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d1e39fa297efdca192c5/download

Logs: https://api.biosimulations.org/logs/6752d1e39fa297efdca192c5?includeOutput=true

View: https://api.biosimulations.org/runs/6752d1e39fa297efdca192c5

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d1e19fa297efdca192c1/download

Logs: https://api.biosimulations.org/logs/6752d1e19fa297efdca192c1?includeOutput=true

View: https://api.biosimulations.org/runs/6752d1e19fa297efdca192c1

HTTP response: 201
| +|[BIOMD0000000081](https://www.ebi.ac.uk/biomodels/BIOMD0000000081)
Suh2004_KCNQ_Regulation|
pass[BIOMD0000000081_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000081#Files)
|FAIL|
pass[BIOMD0000000081_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000081#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d1f8c3054f763d54f92b/download

Logs: https://api.biosimulations.org/logs/6752d1f8c3054f763d54f92b?includeOutput=true

View: https://api.biosimulations.org/runs/6752d1f8c3054f763d54f92b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d1f69fa297efdca192d7/download

Logs: https://api.biosimulations.org/logs/6752d1f69fa297efdca192d7?includeOutput=true

View: https://api.biosimulations.org/runs/6752d1f69fa297efdca192d7

HTTP response: 201
| +|
[BIOMD0000000082](https://www.ebi.ac.uk/biomodels/BIOMD0000000082)
Thomsen1988_AdenylateCyclase_IThomsen1988_AdenylateCyclase_Inhibition
|
pass[BIOMD0000000082_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000082#Files)
|pass|
pass[BIOMD0000000082_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000082#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d20d707aa641045ea043/download

Logs: https://api.biosimulations.org/logs/6752d20d707aa641045ea043?includeOutput=true

View: https://api.biosimulations.org/runs/6752d20d707aa641045ea043

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d20b707aa641045ea03f/download

Logs: https://api.biosimulations.org/logs/6752d20b707aa641045ea03f?includeOutput=true

View: https://api.biosimulations.org/runs/6752d20b707aa641045ea03f

HTTP response: 201
| +|[BIOMD0000000083](https://www.ebi.ac.uk/biomodels/BIOMD0000000083)
Leloup2003_CircClock_LD_REV-ERBalpha|
pass[BIOMD0000000083_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000083#Files)
|pass|
pass[BIOMD0000000083_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000083#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d221c3054f763d54f95e/download

Logs: https://api.biosimulations.org/logs/6752d221c3054f763d54f95e?includeOutput=true

View: https://api.biosimulations.org/runs/6752d221c3054f763d54f95e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d21f707aa641045ea04d/download

Logs: https://api.biosimulations.org/logs/6752d21f707aa641045ea04d?includeOutput=true

View: https://api.biosimulations.org/runs/6752d21f707aa641045ea04d

HTTP response: 201
| +|[BIOMD0000000084](https://www.ebi.ac.uk/biomodels/BIOMD0000000084)
Hornberg2005_ERKcascade|
pass[BIOMD0000000084_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000084#Files)
|pass|
pass[BIOMD0000000084_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000084#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d236c3054f763d54f96f/download

Logs: https://api.biosimulations.org/logs/6752d236c3054f763d54f96f?includeOutput=true

View: https://api.biosimulations.org/runs/6752d236c3054f763d54f96f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d234c3054f763d54f969/download

Logs: https://api.biosimulations.org/logs/6752d234c3054f763d54f969?includeOutput=true

View: https://api.biosimulations.org/runs/6752d234c3054f763d54f969

HTTP response: 201
| +|[BIOMD0000000085](https://www.ebi.ac.uk/biomodels/BIOMD0000000085)
Maurya2005_GTPaseCycle_reducedOrder|
pass[BIOMD0000000085_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000085#Files)
|pass|
pass[BIOMD0000000085_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000085#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d24b707aa641045ea081/download

Logs: https://api.biosimulations.org/logs/6752d24b707aa641045ea081?includeOutput=true

View: https://api.biosimulations.org/runs/6752d24b707aa641045ea081

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d249c3054f763d54f983/download

Logs: https://api.biosimulations.org/logs/6752d249c3054f763d54f983?includeOutput=true

View: https://api.biosimulations.org/runs/6752d249c3054f763d54f983

HTTP response: 201
| +|[BIOMD0000000086](https://www.ebi.ac.uk/biomodels/BIOMD0000000086)
Bornheimer2004_GTPaseCycle|
pass[BIOMD0000000086_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000086#Files)
|pass|
pass[BIOMD0000000086_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000086#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d261c3054f763d54f999/download

Logs: https://api.biosimulations.org/logs/6752d261c3054f763d54f999?includeOutput=true

View: https://api.biosimulations.org/runs/6752d261c3054f763d54f999

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d25e707aa641045ea092/download

Logs: https://api.biosimulations.org/logs/6752d25e707aa641045ea092?includeOutput=true

View: https://api.biosimulations.org/runs/6752d25e707aa641045ea092

HTTP response: 201
| +|[BIOMD0000000087](https://www.ebi.ac.uk/biomodels/BIOMD0000000087)
Proctor2006_telomere|
pass[BIOMD0000000087_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000087#Files)
|pass|
pass[BIOMD0000000087_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000087#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d273c3054f763d54f9af/download

Logs: https://api.biosimulations.org/logs/6752d273c3054f763d54f9af?includeOutput=true

View: https://api.biosimulations.org/runs/6752d273c3054f763d54f9af

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d2719fa297efdca19340/download

Logs: https://api.biosimulations.org/logs/6752d2719fa297efdca19340?includeOutput=true

View: https://api.biosimulations.org/runs/6752d2719fa297efdca19340

HTTP response: 201
| +|[BIOMD0000000088](https://www.ebi.ac.uk/biomodels/BIOMD0000000088)
Maeda2006_MyosinPhosphorylation|
pass[BIOMD0000000088_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000088#Files)
|pass|
pass[BIOMD0000000088_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000088#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d28a707aa641045ea0b2/download

Logs: https://api.biosimulations.org/logs/6752d28a707aa641045ea0b2?includeOutput=true

View: https://api.biosimulations.org/runs/6752d28a707aa641045ea0b2

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d288707aa641045ea0ac/download

Logs: https://api.biosimulations.org/logs/6752d288707aa641045ea0ac?includeOutput=true

View: https://api.biosimulations.org/runs/6752d288707aa641045ea0ac

HTTP response: 201
| +|[BIOMD0000000089](https://www.ebi.ac.uk/biomodels/BIOMD0000000089)
Locke2006_CircClock_LL|
pass[BIOMD0000000089_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000089#Files)
|FAIL|
pass[BIOMD0000000089_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000089#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d2a6707aa641045ea0d2/download

Logs: https://api.biosimulations.org/logs/6752d2a6707aa641045ea0d2?includeOutput=true

View: https://api.biosimulations.org/runs/6752d2a6707aa641045ea0d2

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d2a39fa297efdca19376/download

Logs: https://api.biosimulations.org/logs/6752d2a39fa297efdca19376?includeOutput=true

View: https://api.biosimulations.org/runs/6752d2a39fa297efdca19376

HTTP response: 201
| +|[BIOMD0000000090](https://www.ebi.ac.uk/biomodels/BIOMD0000000090)
Wolf2001_Respiratory_Oscillations|
pass[BIOMD0000000090_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000090#Files)
|pass|
pass[BIOMD0000000090_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000090#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d2bb707aa641045ea0e5/download

Logs: https://api.biosimulations.org/logs/6752d2bb707aa641045ea0e5?includeOutput=true

View: https://api.biosimulations.org/runs/6752d2bb707aa641045ea0e5

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d2b99fa297efdca1938a/download

Logs: https://api.biosimulations.org/logs/6752d2b99fa297efdca1938a?includeOutput=true

View: https://api.biosimulations.org/runs/6752d2b99fa297efdca1938a

HTTP response: 201
| +|
[BIOMD0000000091](https://www.ebi.ac.uk/biomodels/BIOMD0000000091)
Proctor2005 - Actions of chapeProctor2005 - Actions of chaperones and their role in ageing
|
pass[BIOMD0000000091_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000091#Files)
|pass|
pass[BIOMD0000000091_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000091#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d2d09fa297efdca193a7/download

Logs: https://api.biosimulations.org/logs/6752d2d09fa297efdca193a7?includeOutput=true

View: https://api.biosimulations.org/runs/6752d2d09fa297efdca193a7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d2cec3054f763d54fa01/download

Logs: https://api.biosimulations.org/logs/6752d2cec3054f763d54fa01?includeOutput=true

View: https://api.biosimulations.org/runs/6752d2cec3054f763d54fa01

HTTP response: 201
| +|[BIOMD0000000092](https://www.ebi.ac.uk/biomodels/BIOMD0000000092)
Fuentes2005_ZymogenActivation|
pass[BIOMD0000000092_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000092#Files)
|pass|
pass[BIOMD0000000092_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000092#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d2e59fa297efdca193bf/download

Logs: https://api.biosimulations.org/logs/6752d2e59fa297efdca193bf?includeOutput=true

View: https://api.biosimulations.org/runs/6752d2e59fa297efdca193bf

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d2e3c3054f763d54fa13/download

Logs: https://api.biosimulations.org/logs/6752d2e3c3054f763d54fa13?includeOutput=true

View: https://api.biosimulations.org/runs/6752d2e3c3054f763d54fa13

HTTP response: 201
| +|[BIOMD0000000093](https://www.ebi.ac.uk/biomodels/BIOMD0000000093)
Yamada2003_JAK_STAT_pathway|
pass[BIOMD0000000093_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000093#Files)
|pass|
pass[BIOMD0000000093_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000093#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d2f9c3054f763d54fa2d/download

Logs: https://api.biosimulations.org/logs/6752d2f9c3054f763d54fa2d?includeOutput=true

View: https://api.biosimulations.org/runs/6752d2f9c3054f763d54fa2d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d2f7707aa641045ea120/download

Logs: https://api.biosimulations.org/logs/6752d2f7707aa641045ea120?includeOutput=true

View: https://api.biosimulations.org/runs/6752d2f7707aa641045ea120

HTTP response: 201
| +|[BIOMD0000000094](https://www.ebi.ac.uk/biomodels/BIOMD0000000094)
Yamada2003_JAK_STAT_SOCS1_knockout|
pass[BIOMD0000000094_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000094#Files)
|pass|
pass[BIOMD0000000094_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000094#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d30dc3054f763d54fa48/download

Logs: https://api.biosimulations.org/logs/6752d30dc3054f763d54fa48?includeOutput=true

View: https://api.biosimulations.org/runs/6752d30dc3054f763d54fa48

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d30bc3054f763d54fa44/download

Logs: https://api.biosimulations.org/logs/6752d30bc3054f763d54fa44?includeOutput=true

View: https://api.biosimulations.org/runs/6752d30bc3054f763d54fa44

HTTP response: 201
| +|[BIOMD0000000095](https://www.ebi.ac.uk/biomodels/BIOMD0000000095)
Zeilinger2006_PRR7-PRR9-Y|
pass[BIOMD0000000095_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000095#Files)
|FAIL|
pass[BIOMD0000000095_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000095#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d323707aa641045ea143/download

Logs: https://api.biosimulations.org/logs/6752d323707aa641045ea143?includeOutput=true

View: https://api.biosimulations.org/runs/6752d323707aa641045ea143

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d321707aa641045ea140/download

Logs: https://api.biosimulations.org/logs/6752d321707aa641045ea140?includeOutput=true

View: https://api.biosimulations.org/runs/6752d321707aa641045ea140

HTTP response: 201
| +|[BIOMD0000000096](https://www.ebi.ac.uk/biomodels/BIOMD0000000096)
Zeilinger2006_PRR7-PRR9light-Y|
pass[BIOMD0000000096_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000096#Files)
|FAIL|
pass[BIOMD0000000096_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000096#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d339707aa641045ea151/download

Logs: https://api.biosimulations.org/logs/6752d339707aa641045ea151?includeOutput=true

View: https://api.biosimulations.org/runs/6752d339707aa641045ea151

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d337c3054f763d54fa70/download

Logs: https://api.biosimulations.org/logs/6752d337c3054f763d54fa70?includeOutput=true

View: https://api.biosimulations.org/runs/6752d337c3054f763d54fa70

HTTP response: 201
| +|[BIOMD0000000097](https://www.ebi.ac.uk/biomodels/BIOMD0000000097)
Zeilinger2006_PRR7-PRR9light-Yprime|
pass[BIOMD0000000097_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000097#Files)
|FAIL|
pass[BIOMD0000000097_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000097#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d352c3054f763d54fa84/download

Logs: https://api.biosimulations.org/logs/6752d352c3054f763d54fa84?includeOutput=true

View: https://api.biosimulations.org/runs/6752d352c3054f763d54fa84

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d350c3054f763d54fa7d/download

Logs: https://api.biosimulations.org/logs/6752d350c3054f763d54fa7d?includeOutput=true

View: https://api.biosimulations.org/runs/6752d350c3054f763d54fa7d

HTTP response: 201
| +|[BIOMD0000000098](https://www.ebi.ac.uk/biomodels/BIOMD0000000098)
Goldbeter1990_CalciumSpike_CICR|
pass[BIOMD0000000098_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000098#Files)
|pass|
pass[BIOMD0000000098_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000098#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d3679fa297efdca1943a/download

Logs: https://api.biosimulations.org/logs/6752d3679fa297efdca1943a?includeOutput=true

View: https://api.biosimulations.org/runs/6752d3679fa297efdca1943a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d3659fa297efdca19437/download

Logs: https://api.biosimulations.org/logs/6752d3659fa297efdca19437?includeOutput=true

View: https://api.biosimulations.org/runs/6752d3659fa297efdca19437

HTTP response: 201
| +|[BIOMD0000000099](https://www.ebi.ac.uk/biomodels/BIOMD0000000099)
Laub1998_SpontaneousOscillations|
pass[BIOMD0000000099_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000099#Files)
|pass|
pass[BIOMD0000000099_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000099#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d37bc3054f763d54faca/download

Logs: https://api.biosimulations.org/logs/6752d37bc3054f763d54faca?includeOutput=true

View: https://api.biosimulations.org/runs/6752d37bc3054f763d54faca

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d379c3054f763d54fabe/download

Logs: https://api.biosimulations.org/logs/6752d379c3054f763d54fabe?includeOutput=true

View: https://api.biosimulations.org/runs/6752d379c3054f763d54fabe

HTTP response: 201
| +|
[BIOMD0000000100](https://www.ebi.ac.uk/biomodels/BIOMD0000000100)
Rozi2003_GlycogenPhosphorylaseRozi2003_GlycogenPhosphorylase_Activation
|
pass[BIOMD0000000100_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000100#Files)
|pass|
pass[BIOMD0000000100_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000100#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d3909fa297efdca19470/download

Logs: https://api.biosimulations.org/logs/6752d3909fa297efdca19470?includeOutput=true

View: https://api.biosimulations.org/runs/6752d3909fa297efdca19470

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d38e9fa297efdca1946d/download

Logs: https://api.biosimulations.org/logs/6752d38e9fa297efdca1946d?includeOutput=true

View: https://api.biosimulations.org/runs/6752d38e9fa297efdca1946d

HTTP response: 201
| +|[BIOMD0000000101](https://www.ebi.ac.uk/biomodels/BIOMD0000000101)
Vilar2006_TGFbeta|
pass[BIOMD0000000101_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000101#Files)
|pass|
pass[BIOMD0000000101_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000101#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d3a3c3054f763d54fafd/download

Logs: https://api.biosimulations.org/logs/6752d3a3c3054f763d54fafd?includeOutput=true

View: https://api.biosimulations.org/runs/6752d3a3c3054f763d54fafd

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d3a2707aa641045ea1d3/download

Logs: https://api.biosimulations.org/logs/6752d3a2707aa641045ea1d3?includeOutput=true

View: https://api.biosimulations.org/runs/6752d3a2707aa641045ea1d3

HTTP response: 201
| +|[BIOMD0000000102](https://www.ebi.ac.uk/biomodels/BIOMD0000000102)
Legewie2006_apoptosis_WT|
pass[BIOMD0000000102_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000102#Files)
|pass|
pass[BIOMD0000000102_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000102#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d3b99fa297efdca1949b/download

Logs: https://api.biosimulations.org/logs/6752d3b99fa297efdca1949b?includeOutput=true

View: https://api.biosimulations.org/runs/6752d3b99fa297efdca1949b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d3b79fa297efdca19498/download

Logs: https://api.biosimulations.org/logs/6752d3b79fa297efdca19498?includeOutput=true

View: https://api.biosimulations.org/runs/6752d3b79fa297efdca19498

HTTP response: 201
| +|[BIOMD0000000103](https://www.ebi.ac.uk/biomodels/BIOMD0000000103)
Legewie2006_apoptosis_NC|
pass[BIOMD0000000103_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000103#Files)
|pass|
pass[BIOMD0000000103_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000103#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d3d1c3054f763d54fb26/download

Logs: https://api.biosimulations.org/logs/6752d3d1c3054f763d54fb26?includeOutput=true

View: https://api.biosimulations.org/runs/6752d3d1c3054f763d54fb26

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d3cf9fa297efdca194a5/download

Logs: https://api.biosimulations.org/logs/6752d3cf9fa297efdca194a5?includeOutput=true

View: https://api.biosimulations.org/runs/6752d3cf9fa297efdca194a5

HTTP response: 201
| +|
[BIOMD0000000104](https://www.ebi.ac.uk/biomodels/BIOMD0000000104)
Klipp2002_MetabolicOptimizatioKlipp2002_MetabolicOptimization_linearPathway(n=2)
|
pass[BIOMD0000000104_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000104#Files)
|pass|
pass[BIOMD0000000104_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000104#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d3e7707aa641045ea217/download

Logs: https://api.biosimulations.org/logs/6752d3e7707aa641045ea217?includeOutput=true

View: https://api.biosimulations.org/runs/6752d3e7707aa641045ea217

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d3e59fa297efdca194c0/download

Logs: https://api.biosimulations.org/logs/6752d3e59fa297efdca194c0?includeOutput=true

View: https://api.biosimulations.org/runs/6752d3e59fa297efdca194c0

HTTP response: 201
| +|
[BIOMD0000000105](https://www.ebi.ac.uk/biomodels/BIOMD0000000105)
Proctor2007 - Age related declProctor2007 - Age related decline of proteolysis, ubiquitin-proteome system
|
pass[BIOMD0000000105_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000105#Files)
|pass|
pass[BIOMD0000000105_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000105#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d3fc707aa641045ea229/download

Logs: https://api.biosimulations.org/logs/6752d3fc707aa641045ea229?includeOutput=true

View: https://api.biosimulations.org/runs/6752d3fc707aa641045ea229

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d3fac3054f763d54fb4b/download

Logs: https://api.biosimulations.org/logs/6752d3fac3054f763d54fb4b?includeOutput=true

View: https://api.biosimulations.org/runs/6752d3fac3054f763d54fb4b

HTTP response: 201
| +|[BIOMD0000000106](https://www.ebi.ac.uk/biomodels/BIOMD0000000106)
Yang2007_ArachidonicAcid|
pass[BIOMD0000000106_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000106#Files)
|pass|
pass[BIOMD0000000106_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000106#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d416707aa641045ea23c/download

Logs: https://api.biosimulations.org/logs/6752d416707aa641045ea23c?includeOutput=true

View: https://api.biosimulations.org/runs/6752d416707aa641045ea23c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d414c3054f763d54fb52/download

Logs: https://api.biosimulations.org/logs/6752d414c3054f763d54fb52?includeOutput=true

View: https://api.biosimulations.org/runs/6752d414c3054f763d54fb52

HTTP response: 201
| +|
[BIOMD0000000107](https://www.ebi.ac.uk/biomodels/BIOMD0000000107)
Novak1993 - Cell cycle M-phaseNovak1993 - Cell cycle M-phase control
|
pass[BIOMD0000000107_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000107#Files)
|pass|
pass[BIOMD0000000107_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000107#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d42f707aa641045ea253/download

Logs: https://api.biosimulations.org/logs/6752d42f707aa641045ea253?includeOutput=true

View: https://api.biosimulations.org/runs/6752d42f707aa641045ea253

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d42d707aa641045ea248/download

Logs: https://api.biosimulations.org/logs/6752d42d707aa641045ea248?includeOutput=true

View: https://api.biosimulations.org/runs/6752d42d707aa641045ea248

HTTP response: 201
| +|[BIOMD0000000108](https://www.ebi.ac.uk/biomodels/BIOMD0000000108)
Kowald2006_SOD|
pass[BIOMD0000000108_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000108#Files)
|pass|
pass[BIOMD0000000108_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000108#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d444c3054f763d54fb7a/download

Logs: https://api.biosimulations.org/logs/6752d444c3054f763d54fb7a?includeOutput=true

View: https://api.biosimulations.org/runs/6752d444c3054f763d54fb7a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d442707aa641045ea263/download

Logs: https://api.biosimulations.org/logs/6752d442707aa641045ea263?includeOutput=true

View: https://api.biosimulations.org/runs/6752d442707aa641045ea263

HTTP response: 201
| +|[BIOMD0000000109](https://www.ebi.ac.uk/biomodels/BIOMD0000000109)
Haberichter2007_cellcycle|
pass[BIOMD0000000109_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000109#Files)
|pass|
pass[BIOMD0000000109_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000109#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d459c3054f763d54fb8e/download

Logs: https://api.biosimulations.org/logs/6752d459c3054f763d54fb8e?includeOutput=true

View: https://api.biosimulations.org/runs/6752d459c3054f763d54fb8e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d457c3054f763d54fb8b/download

Logs: https://api.biosimulations.org/logs/6752d457c3054f763d54fb8b?includeOutput=true

View: https://api.biosimulations.org/runs/6752d457c3054f763d54fb8b

HTTP response: 201
| +|[BIOMD0000000110](https://www.ebi.ac.uk/biomodels/BIOMD0000000110)
Qu2003_CellCycle|
pass[BIOMD0000000110_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000110#Files)
|pass|
pass[BIOMD0000000110_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000110#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d4749fa297efdca1954c/download

Logs: https://api.biosimulations.org/logs/6752d4749fa297efdca1954c?includeOutput=true

View: https://api.biosimulations.org/runs/6752d4749fa297efdca1954c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d472c3054f763d54fb9b/download

Logs: https://api.biosimulations.org/logs/6752d472c3054f763d54fb9b?includeOutput=true

View: https://api.biosimulations.org/runs/6752d472c3054f763d54fb9b

HTTP response: 201
| +|[BIOMD0000000111](https://www.ebi.ac.uk/biomodels/BIOMD0000000111)
Novak2001_FissionYeast_CellCycle|
pass[BIOMD0000000111_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000111#Files)
|pass|
pass[BIOMD0000000111_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000111#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d4899fa297efdca1955a/download

Logs: https://api.biosimulations.org/logs/6752d4899fa297efdca1955a?includeOutput=true

View: https://api.biosimulations.org/runs/6752d4899fa297efdca1955a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d487c3054f763d54fbb8/download

Logs: https://api.biosimulations.org/logs/6752d487c3054f763d54fbb8?includeOutput=true

View: https://api.biosimulations.org/runs/6752d487c3054f763d54fbb8

HTTP response: 201
| +|[BIOMD0000000112](https://www.ebi.ac.uk/biomodels/BIOMD0000000112)
Clarke2006_Smad_signalling|
pass[BIOMD0000000112_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000112#Files)
|pass|
pass[BIOMD0000000112_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000112#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d49e9fa297efdca19569/download

Logs: https://api.biosimulations.org/logs/6752d49e9fa297efdca19569?includeOutput=true

View: https://api.biosimulations.org/runs/6752d49e9fa297efdca19569

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d49c9fa297efdca19564/download

Logs: https://api.biosimulations.org/logs/6752d49c9fa297efdca19564?includeOutput=true

View: https://api.biosimulations.org/runs/6752d49c9fa297efdca19564

HTTP response: 201
| +|[BIOMD0000000113](https://www.ebi.ac.uk/biomodels/BIOMD0000000113)
Dupont1992_Ca_dpt_protein_phospho|
pass[BIOMD0000000113_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000113#Files)
|pass|
pass[BIOMD0000000113_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000113#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d4b3c3054f763d54fbda/download

Logs: https://api.biosimulations.org/logs/6752d4b3c3054f763d54fbda?includeOutput=true

View: https://api.biosimulations.org/runs/6752d4b3c3054f763d54fbda

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d4b19fa297efdca19579/download

Logs: https://api.biosimulations.org/logs/6752d4b19fa297efdca19579?includeOutput=true

View: https://api.biosimulations.org/runs/6752d4b19fa297efdca19579

HTTP response: 201
| +|[BIOMD0000000114](https://www.ebi.ac.uk/biomodels/BIOMD0000000114)
Somogyi1990_CaOscillations|
pass[BIOMD0000000114_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000114#Files)
|pass|
pass[BIOMD0000000114_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000114#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d4c8707aa641045ea317/download

Logs: https://api.biosimulations.org/logs/6752d4c8707aa641045ea317?includeOutput=true

View: https://api.biosimulations.org/runs/6752d4c8707aa641045ea317

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d4c6c3054f763d54fbe8/download

Logs: https://api.biosimulations.org/logs/6752d4c6c3054f763d54fbe8?includeOutput=true

View: https://api.biosimulations.org/runs/6752d4c6c3054f763d54fbe8

HTTP response: 201
| +|
[BIOMD0000000115](https://www.ebi.ac.uk/biomodels/BIOMD0000000115)
Somogyi1990_CaOscillations_SinSomogyi1990_CaOscillations_SingleCaSpike
|
pass[BIOMD0000000115_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000115#Files)
|pass|
pass[BIOMD0000000115_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000115#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d4d89fa297efdca195a2/download

Logs: https://api.biosimulations.org/logs/6752d4d89fa297efdca195a2?includeOutput=true

View: https://api.biosimulations.org/runs/6752d4d89fa297efdca195a2

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d4d6707aa641045ea31d/download

Logs: https://api.biosimulations.org/logs/6752d4d6707aa641045ea31d?includeOutput=true

View: https://api.biosimulations.org/runs/6752d4d6707aa641045ea31d

HTTP response: 201
| +|[BIOMD0000000116](https://www.ebi.ac.uk/biomodels/BIOMD0000000116)
McClean2007_CrossTalk|
pass[BIOMD0000000116_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000116#Files)
|pass|
pass[BIOMD0000000116_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000116#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d4ea9fa297efdca195bb/download

Logs: https://api.biosimulations.org/logs/6752d4ea9fa297efdca195bb?includeOutput=true

View: https://api.biosimulations.org/runs/6752d4ea9fa297efdca195bb

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d4e8707aa641045ea335/download

Logs: https://api.biosimulations.org/logs/6752d4e8707aa641045ea335?includeOutput=true

View: https://api.biosimulations.org/runs/6752d4e8707aa641045ea335

HTTP response: 201
| +|[BIOMD0000000118](https://www.ebi.ac.uk/biomodels/BIOMD0000000118)
Golomb2006_SomaticBursting|
pass[BIOMD0000000118_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000118#Files)
|pass|
pass[BIOMD0000000118_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000118#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d4fe707aa641045ea355/download

Logs: https://api.biosimulations.org/logs/6752d4fe707aa641045ea355?includeOutput=true

View: https://api.biosimulations.org/runs/6752d4fe707aa641045ea355

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d4fcc3054f763d54fc1d/download

Logs: https://api.biosimulations.org/logs/6752d4fcc3054f763d54fc1d?includeOutput=true

View: https://api.biosimulations.org/runs/6752d4fcc3054f763d54fc1d

HTTP response: 201
| +|
[BIOMD0000000119](https://www.ebi.ac.uk/biomodels/BIOMD0000000119)
Golomb2006_SomaticBursting_nonGolomb2006_SomaticBursting_nonzero[Ca]
|
pass[BIOMD0000000119_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000119#Files)
|pass|
pass[BIOMD0000000119_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000119#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d5139fa297efdca195e5/download

Logs: https://api.biosimulations.org/logs/6752d5139fa297efdca195e5?includeOutput=true

View: https://api.biosimulations.org/runs/6752d5139fa297efdca195e5

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d511c3054f763d54fc32/download

Logs: https://api.biosimulations.org/logs/6752d511c3054f763d54fc32?includeOutput=true

View: https://api.biosimulations.org/runs/6752d511c3054f763d54fc32

HTTP response: 201
| +|[BIOMD0000000120](https://www.ebi.ac.uk/biomodels/BIOMD0000000120)
Chan2004_TCell_receptor_activation|
pass[BIOMD0000000120_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000120#Files)
|FAIL|
pass[BIOMD0000000120_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000120#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d5289fa297efdca195f9/download

Logs: https://api.biosimulations.org/logs/6752d5289fa297efdca195f9?includeOutput=true

View: https://api.biosimulations.org/runs/6752d5289fa297efdca195f9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d526c3054f763d54fc46/download

Logs: https://api.biosimulations.org/logs/6752d526c3054f763d54fc46?includeOutput=true

View: https://api.biosimulations.org/runs/6752d526c3054f763d54fc46

HTTP response: 201
| +|[BIOMD0000000121](https://www.ebi.ac.uk/biomodels/BIOMD0000000121)
Clancy2001_Kchannel|
pass[BIOMD0000000121_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000121#Files)
|pass|
pass[BIOMD0000000121_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000121#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d53bc3054f763d54fc54/download

Logs: https://api.biosimulations.org/logs/6752d53bc3054f763d54fc54?includeOutput=true

View: https://api.biosimulations.org/runs/6752d53bc3054f763d54fc54

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d539707aa641045ea38d/download

Logs: https://api.biosimulations.org/logs/6752d539707aa641045ea38d?includeOutput=true

View: https://api.biosimulations.org/runs/6752d539707aa641045ea38d

HTTP response: 201
| +|
[BIOMD0000000122](https://www.ebi.ac.uk/biomodels/BIOMD0000000122)
Fisher2006_Ca_Oscillation_dpdnFisher2006_Ca_Oscillation_dpdnt_NFAT_dynamics
|
pass[BIOMD0000000122_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000122#Files)
|pass|
pass[BIOMD0000000122_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000122#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d54fc3054f763d54fc64/download

Logs: https://api.biosimulations.org/logs/6752d54fc3054f763d54fc64?includeOutput=true

View: https://api.biosimulations.org/runs/6752d54fc3054f763d54fc64

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d54d707aa641045ea3af/download

Logs: https://api.biosimulations.org/logs/6752d54d707aa641045ea3af?includeOutput=true

View: https://api.biosimulations.org/runs/6752d54d707aa641045ea3af

HTTP response: 201
| +|[BIOMD0000000123](https://www.ebi.ac.uk/biomodels/BIOMD0000000123)
Fisher2006_NFAT_Activation|
pass[BIOMD0000000123_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000123#Files)
|pass|
pass[BIOMD0000000123_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000123#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d562c3054f763d54fc71/download

Logs: https://api.biosimulations.org/logs/6752d562c3054f763d54fc71?includeOutput=true

View: https://api.biosimulations.org/runs/6752d562c3054f763d54fc71

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d560c3054f763d54fc6b/download

Logs: https://api.biosimulations.org/logs/6752d560c3054f763d54fc6b?includeOutput=true

View: https://api.biosimulations.org/runs/6752d560c3054f763d54fc6b

HTTP response: 201
| +|[BIOMD0000000124](https://www.ebi.ac.uk/biomodels/BIOMD0000000124)
Wu2006_K+Channel|
pass[BIOMD0000000124_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000124#Files)
|pass|
pass[BIOMD0000000124_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000124#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d5789fa297efdca19645/download

Logs: https://api.biosimulations.org/logs/6752d5789fa297efdca19645?includeOutput=true

View: https://api.biosimulations.org/runs/6752d5789fa297efdca19645

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d576707aa641045ea3db/download

Logs: https://api.biosimulations.org/logs/6752d576707aa641045ea3db?includeOutput=true

View: https://api.biosimulations.org/runs/6752d576707aa641045ea3db

HTTP response: 201
| +|
[BIOMD0000000125](https://www.ebi.ac.uk/biomodels/BIOMD0000000125)
Komarova2005_TheoreticalFramewKomarova2005_TheoreticalFramework_BasicArchitecture
|
pass[BIOMD0000000125_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000125#Files)
|pass|
pass[BIOMD0000000125_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000125#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d58d9fa297efdca19659/download

Logs: https://api.biosimulations.org/logs/6752d58d9fa297efdca19659?includeOutput=true

View: https://api.biosimulations.org/runs/6752d58d9fa297efdca19659

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d58b9fa297efdca19653/download

Logs: https://api.biosimulations.org/logs/6752d58b9fa297efdca19653?includeOutput=true

View: https://api.biosimulations.org/runs/6752d58b9fa297efdca19653

HTTP response: 201
| +|[BIOMD0000000126](https://www.ebi.ac.uk/biomodels/BIOMD0000000126)
Clancy2002_CardiacSodiumChannel_WT|
pass[BIOMD0000000126_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000126#Files)
|pass|
pass[BIOMD0000000126_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000126#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d59f9fa297efdca19669/download

Logs: https://api.biosimulations.org/logs/6752d59f9fa297efdca19669?includeOutput=true

View: https://api.biosimulations.org/runs/6752d59f9fa297efdca19669

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d59d707aa641045ea3f4/download

Logs: https://api.biosimulations.org/logs/6752d59d707aa641045ea3f4?includeOutput=true

View: https://api.biosimulations.org/runs/6752d59d707aa641045ea3f4

HTTP response: 201
| +|[BIOMD0000000127](https://www.ebi.ac.uk/biomodels/BIOMD0000000127)
Izhikevich2003_SpikingNeuron|
pass[BIOMD0000000127_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000127#Files)
|pass|
pass[BIOMD0000000127_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000127#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d5b4c3054f763d54fcd5/download

Logs: https://api.biosimulations.org/logs/6752d5b4c3054f763d54fcd5?includeOutput=true

View: https://api.biosimulations.org/runs/6752d5b4c3054f763d54fcd5

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d5b2707aa641045ea40e/download

Logs: https://api.biosimulations.org/logs/6752d5b2707aa641045ea40e?includeOutput=true

View: https://api.biosimulations.org/runs/6752d5b2707aa641045ea40e

HTTP response: 201
| +|[BIOMD0000000128](https://www.ebi.ac.uk/biomodels/BIOMD0000000128)
Bertram2006_Endothelin|
pass[BIOMD0000000128_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000128#Files)
|pass|
pass[BIOMD0000000128_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000128#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d5c49fa297efdca196a5/download

Logs: https://api.biosimulations.org/logs/6752d5c49fa297efdca196a5?includeOutput=true

View: https://api.biosimulations.org/runs/6752d5c49fa297efdca196a5

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d5c2c3054f763d54fcdc/download

Logs: https://api.biosimulations.org/logs/6752d5c2c3054f763d54fcdc?includeOutput=true

View: https://api.biosimulations.org/runs/6752d5c2c3054f763d54fcdc

HTTP response: 201
| +|
[BIOMD0000000129](https://www.ebi.ac.uk/biomodels/BIOMD0000000129)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_inhibitionInducedSpiking
|
pass[BIOMD0000000129_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000129#Files)
|pass|
pass[BIOMD0000000129_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000129#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d5db707aa641045ea431/download

Logs: https://api.biosimulations.org/logs/6752d5db707aa641045ea431?includeOutput=true

View: https://api.biosimulations.org/runs/6752d5db707aa641045ea431

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d5d99fa297efdca196bd/download

Logs: https://api.biosimulations.org/logs/6752d5d99fa297efdca196bd?includeOutput=true

View: https://api.biosimulations.org/runs/6752d5d99fa297efdca196bd

HTTP response: 201
| +|
[BIOMD0000000130](https://www.ebi.ac.uk/biomodels/BIOMD0000000130)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_integrator
|
pass[BIOMD0000000130_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000130#Files)
|pass|
pass[BIOMD0000000130_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000130#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d5ef9fa297efdca196f4/download

Logs: https://api.biosimulations.org/logs/6752d5ef9fa297efdca196f4?includeOutput=true

View: https://api.biosimulations.org/runs/6752d5ef9fa297efdca196f4

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d5edc3054f763d54fd35/download

Logs: https://api.biosimulations.org/logs/6752d5edc3054f763d54fd35?includeOutput=true

View: https://api.biosimulations.org/runs/6752d5edc3054f763d54fd35

HTTP response: 201
| +|
[BIOMD0000000131](https://www.ebi.ac.uk/biomodels/BIOMD0000000131)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_reboundBurst
|
pass[BIOMD0000000131_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000131#Files)
|pass|
pass[BIOMD0000000131_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000131#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d601c3054f763d54fd4d/download

Logs: https://api.biosimulations.org/logs/6752d601c3054f763d54fd4d?includeOutput=true

View: https://api.biosimulations.org/runs/6752d601c3054f763d54fd4d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d600707aa641045ea456/download

Logs: https://api.biosimulations.org/logs/6752d600707aa641045ea456?includeOutput=true

View: https://api.biosimulations.org/runs/6752d600707aa641045ea456

HTTP response: 201
| +|
[BIOMD0000000132](https://www.ebi.ac.uk/biomodels/BIOMD0000000132)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_reboundSpike
|
pass[BIOMD0000000132_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000132#Files)
|pass|
pass[BIOMD0000000132_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000132#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d615c3054f763d54fd5e/download

Logs: https://api.biosimulations.org/logs/6752d615c3054f763d54fd5e?includeOutput=true

View: https://api.biosimulations.org/runs/6752d615c3054f763d54fd5e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d613c3054f763d54fd58/download

Logs: https://api.biosimulations.org/logs/6752d613c3054f763d54fd58?includeOutput=true

View: https://api.biosimulations.org/runs/6752d613c3054f763d54fd58

HTTP response: 201
| +|
[BIOMD0000000133](https://www.ebi.ac.uk/biomodels/BIOMD0000000133)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_resonator
|
pass[BIOMD0000000133_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000133#Files)
|pass|
pass[BIOMD0000000133_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000133#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d628c3054f763d54fd72/download

Logs: https://api.biosimulations.org/logs/6752d628c3054f763d54fd72?includeOutput=true

View: https://api.biosimulations.org/runs/6752d628c3054f763d54fd72

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d6269fa297efdca19733/download

Logs: https://api.biosimulations.org/logs/6752d6269fa297efdca19733?includeOutput=true

View: https://api.biosimulations.org/runs/6752d6269fa297efdca19733

HTTP response: 201
| +|
[BIOMD0000000134](https://www.ebi.ac.uk/biomodels/BIOMD0000000134)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_SpikeLatency
|
pass[BIOMD0000000134_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000134#Files)
|pass|
pass[BIOMD0000000134_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000134#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d63c9fa297efdca19750/download

Logs: https://api.biosimulations.org/logs/6752d63c9fa297efdca19750?includeOutput=true

View: https://api.biosimulations.org/runs/6752d63c9fa297efdca19750

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d63a9fa297efdca1974d/download

Logs: https://api.biosimulations.org/logs/6752d63a9fa297efdca1974d?includeOutput=true

View: https://api.biosimulations.org/runs/6752d63a9fa297efdca1974d

HTTP response: 201
| +|
[BIOMD0000000135](https://www.ebi.ac.uk/biomodels/BIOMD0000000135)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_subthresholdOscillations
|
pass[BIOMD0000000135_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000135#Files)
|pass|
pass[BIOMD0000000135_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000135#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d650707aa641045ea4ac/download

Logs: https://api.biosimulations.org/logs/6752d650707aa641045ea4ac?includeOutput=true

View: https://api.biosimulations.org/runs/6752d650707aa641045ea4ac

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d64e707aa641045ea4a8/download

Logs: https://api.biosimulations.org/logs/6752d64e707aa641045ea4a8?includeOutput=true

View: https://api.biosimulations.org/runs/6752d64e707aa641045ea4a8

HTTP response: 201
| +|
[BIOMD0000000136](https://www.ebi.ac.uk/biomodels/BIOMD0000000136)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_thresholdVariability
|
pass[BIOMD0000000136_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000136#Files)
|pass|
pass[BIOMD0000000136_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000136#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d661707aa641045ea4c8/download

Logs: https://api.biosimulations.org/logs/6752d661707aa641045ea4c8?includeOutput=true

View: https://api.biosimulations.org/runs/6752d661707aa641045ea4c8

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d65fc3054f763d54fdb2/download

Logs: https://api.biosimulations.org/logs/6752d65fc3054f763d54fdb2?includeOutput=true

View: https://api.biosimulations.org/runs/6752d65fc3054f763d54fdb2

HTTP response: 201
| +|
[BIOMD0000000137](https://www.ebi.ac.uk/biomodels/BIOMD0000000137)
Sedaghat2002_InsulinSignallingSedaghat2002_InsulinSignalling_noFeedback
|
pass[BIOMD0000000137_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000137#Files)
|pass|
pass[BIOMD0000000137_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000137#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d675707aa641045ea4d8/download

Logs: https://api.biosimulations.org/logs/6752d675707aa641045ea4d8?includeOutput=true

View: https://api.biosimulations.org/runs/6752d675707aa641045ea4d8

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d673c3054f763d54fdca/download

Logs: https://api.biosimulations.org/logs/6752d673c3054f763d54fdca?includeOutput=true

View: https://api.biosimulations.org/runs/6752d673c3054f763d54fdca

HTTP response: 201
| +|[BIOMD0000000138](https://www.ebi.ac.uk/biomodels/BIOMD0000000138)
Tabak2007_dopamine|
pass[BIOMD0000000138_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000138#Files)
|pass|
pass[BIOMD0000000138_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000138#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d68c9fa297efdca197a0/download

Logs: https://api.biosimulations.org/logs/6752d68c9fa297efdca197a0?includeOutput=true

View: https://api.biosimulations.org/runs/6752d68c9fa297efdca197a0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d6899fa297efdca1979d/download

Logs: https://api.biosimulations.org/logs/6752d6899fa297efdca1979d?includeOutput=true

View: https://api.biosimulations.org/runs/6752d6899fa297efdca1979d

HTTP response: 201
| +|
[BIOMD0000000139](https://www.ebi.ac.uk/biomodels/BIOMD0000000139)
Hoffmann2002_KnockOut_IkBNFkB_Hoffmann2002_KnockOut_IkBNFkB_Signaling
|
pass[BIOMD0000000139_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000139#Files)
|pass|
pass[BIOMD0000000139_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000139#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d6a09fa297efdca197af/download

Logs: https://api.biosimulations.org/logs/6752d6a09fa297efdca197af?includeOutput=true

View: https://api.biosimulations.org/runs/6752d6a09fa297efdca197af

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d69f707aa641045ea501/download

Logs: https://api.biosimulations.org/logs/6752d69f707aa641045ea501?includeOutput=true

View: https://api.biosimulations.org/runs/6752d69f707aa641045ea501

HTTP response: 201
| +|[BIOMD0000000140](https://www.ebi.ac.uk/biomodels/BIOMD0000000140)
Hoffmann2002_WT_IkBNFkB_Signaling|
pass[BIOMD0000000140_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000140#Files)
|pass|
pass[BIOMD0000000140_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000140#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d6b69fa297efdca197c9/download

Logs: https://api.biosimulations.org/logs/6752d6b69fa297efdca197c9?includeOutput=true

View: https://api.biosimulations.org/runs/6752d6b69fa297efdca197c9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d6b4c3054f763d54fe05/download

Logs: https://api.biosimulations.org/logs/6752d6b4c3054f763d54fe05?includeOutput=true

View: https://api.biosimulations.org/runs/6752d6b4c3054f763d54fe05

HTTP response: 201
| +|
[BIOMD0000000141](https://www.ebi.ac.uk/biomodels/BIOMD0000000141)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_Class1Excitable
|
pass[BIOMD0000000141_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000141#Files)
|pass|
pass[BIOMD0000000141_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000141#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d6cbc3054f763d54fe28/download

Logs: https://api.biosimulations.org/logs/6752d6cbc3054f763d54fe28?includeOutput=true

View: https://api.biosimulations.org/runs/6752d6cbc3054f763d54fe28

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d6c99fa297efdca197e3/download

Logs: https://api.biosimulations.org/logs/6752d6c99fa297efdca197e3?includeOutput=true

View: https://api.biosimulations.org/runs/6752d6c99fa297efdca197e3

HTTP response: 201
| +|
[BIOMD0000000142](https://www.ebi.ac.uk/biomodels/BIOMD0000000142)
Izhikevich2004_SpikingNeurons_Izhikevich2004_SpikingNeurons_Class2Excitable
|
pass[BIOMD0000000142_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000142#Files)
|pass|
pass[BIOMD0000000142_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000142#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d6de707aa641045ea538/download

Logs: https://api.biosimulations.org/logs/6752d6de707aa641045ea538?includeOutput=true

View: https://api.biosimulations.org/runs/6752d6de707aa641045ea538

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d6dc9fa297efdca197eb/download

Logs: https://api.biosimulations.org/logs/6752d6dc9fa297efdca197eb?includeOutput=true

View: https://api.biosimulations.org/runs/6752d6dc9fa297efdca197eb

HTTP response: 201
| +|
[BIOMD0000000143](https://www.ebi.ac.uk/biomodels/BIOMD0000000143)
Olsen2003_neutrophil_oscillatoOlsen2003_neutrophil_oscillatory_metabolism
|
pass[BIOMD0000000143_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000143#Files)
|pass|
pass[BIOMD0000000143_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000143#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d6f2c3054f763d54fe55/download

Logs: https://api.biosimulations.org/logs/6752d6f2c3054f763d54fe55?includeOutput=true

View: https://api.biosimulations.org/runs/6752d6f2c3054f763d54fe55

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d6f0c3054f763d54fe51/download

Logs: https://api.biosimulations.org/logs/6752d6f0c3054f763d54fe51?includeOutput=true

View: https://api.biosimulations.org/runs/6752d6f0c3054f763d54fe51

HTTP response: 201
| +|[BIOMD0000000144](https://www.ebi.ac.uk/biomodels/BIOMD0000000144)
Calzone2007_CellCycle|
pass[BIOMD0000000144_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000144#Files)
|pass|
pass[BIOMD0000000144_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000144#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d707c3054f763d54fe71/download

Logs: https://api.biosimulations.org/logs/6752d707c3054f763d54fe71?includeOutput=true

View: https://api.biosimulations.org/runs/6752d707c3054f763d54fe71

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d705707aa641045ea55c/download

Logs: https://api.biosimulations.org/logs/6752d705707aa641045ea55c?includeOutput=true

View: https://api.biosimulations.org/runs/6752d705707aa641045ea55c

HTTP response: 201
| +|
[BIOMD0000000145](https://www.ebi.ac.uk/biomodels/BIOMD0000000145)
Wang2007 - ATP induced intraceWang2007 - ATP induced intracellular Calcium Oscillation
|
pass[BIOMD0000000145_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000145#Files)
|pass|
pass[BIOMD0000000145_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000145#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d71cc3054f763d54fe95/download

Logs: https://api.biosimulations.org/logs/6752d71cc3054f763d54fe95?includeOutput=true

View: https://api.biosimulations.org/runs/6752d71cc3054f763d54fe95

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d71a707aa641045ea56e/download

Logs: https://api.biosimulations.org/logs/6752d71a707aa641045ea56e?includeOutput=true

View: https://api.biosimulations.org/runs/6752d71a707aa641045ea56e

HTTP response: 201
| +|[BIOMD0000000146](https://www.ebi.ac.uk/biomodels/BIOMD0000000146)
Hatakeyama2003_MAPK|
pass[BIOMD0000000146_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000146#Files)
|pass|
pass[BIOMD0000000146_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000146#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d732c3054f763d54feaa/download

Logs: https://api.biosimulations.org/logs/6752d732c3054f763d54feaa?includeOutput=true

View: https://api.biosimulations.org/runs/6752d732c3054f763d54feaa

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d7309fa297efdca19834/download

Logs: https://api.biosimulations.org/logs/6752d7309fa297efdca19834?includeOutput=true

View: https://api.biosimulations.org/runs/6752d7309fa297efdca19834

HTTP response: 201
| +|[BIOMD0000000147](https://www.ebi.ac.uk/biomodels/BIOMD0000000147)
ODea2007_IkappaB|
pass[BIOMD0000000147_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000147#Files)
|FAIL|
pass[BIOMD0000000147_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000147#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d749707aa641045ea596/download

Logs: https://api.biosimulations.org/logs/6752d749707aa641045ea596?includeOutput=true

View: https://api.biosimulations.org/runs/6752d749707aa641045ea596

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d7479fa297efdca19849/download

Logs: https://api.biosimulations.org/logs/6752d7479fa297efdca19849?includeOutput=true

View: https://api.biosimulations.org/runs/6752d7479fa297efdca19849

HTTP response: 201
| +|[BIOMD0000000148](https://www.ebi.ac.uk/biomodels/BIOMD0000000148)
Komarova2003_BoneRemodeling|
pass[BIOMD0000000148_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000148#Files)
|FAIL|
pass[BIOMD0000000148_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000148#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d75d9fa297efdca19855/download

Logs: https://api.biosimulations.org/logs/6752d75d9fa297efdca19855?includeOutput=true

View: https://api.biosimulations.org/runs/6752d75d9fa297efdca19855

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d75bc3054f763d54fee8/download

Logs: https://api.biosimulations.org/logs/6752d75bc3054f763d54fee8?includeOutput=true

View: https://api.biosimulations.org/runs/6752d75bc3054f763d54fee8

HTTP response: 201
| +|
[BIOMD0000000149](https://www.ebi.ac.uk/biomodels/BIOMD0000000149)
Kim2007 - Crosstalk between WnKim2007 - Crosstalk between Wnt and ERK pathways
|
pass[BIOMD0000000149_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000149#Files)
|pass|
pass[BIOMD0000000149_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000149#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d772c3054f763d54ff05/download

Logs: https://api.biosimulations.org/logs/6752d772c3054f763d54ff05?includeOutput=true

View: https://api.biosimulations.org/runs/6752d772c3054f763d54ff05

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d770707aa641045ea5bb/download

Logs: https://api.biosimulations.org/logs/6752d770707aa641045ea5bb?includeOutput=true

View: https://api.biosimulations.org/runs/6752d770707aa641045ea5bb

HTTP response: 201
| +|[BIOMD0000000150](https://www.ebi.ac.uk/biomodels/BIOMD0000000150)
Morris2002_CellCycle_CDK2Cyclin|
pass[BIOMD0000000150_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000150#Files)
|pass|
pass[BIOMD0000000150_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000150#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d788707aa641045ea5d1/download

Logs: https://api.biosimulations.org/logs/6752d788707aa641045ea5d1?includeOutput=true

View: https://api.biosimulations.org/runs/6752d788707aa641045ea5d1

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d7859fa297efdca19878/download

Logs: https://api.biosimulations.org/logs/6752d7859fa297efdca19878?includeOutput=true

View: https://api.biosimulations.org/runs/6752d7859fa297efdca19878

HTTP response: 201
| +|[BIOMD0000000151](https://www.ebi.ac.uk/biomodels/BIOMD0000000151)
Singh2006_IL6_Signal_Transduction|
pass[BIOMD0000000151_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000151#Files)
|pass|
pass[BIOMD0000000151_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000151#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d79dc3054f763d54ff23/download

Logs: https://api.biosimulations.org/logs/6752d79dc3054f763d54ff23?includeOutput=true

View: https://api.biosimulations.org/runs/6752d79dc3054f763d54ff23

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d79b9fa297efdca1988b/download

Logs: https://api.biosimulations.org/logs/6752d79b9fa297efdca1988b?includeOutput=true

View: https://api.biosimulations.org/runs/6752d79b9fa297efdca1988b

HTTP response: 201
| +|[BIOMD0000000152](https://www.ebi.ac.uk/biomodels/BIOMD0000000152)
Fernandez2006_ModelA|
pass[BIOMD0000000152_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000152#Files)
|pass|
pass[BIOMD0000000152_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000152#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d7b8707aa641045ea606/download

Logs: https://api.biosimulations.org/logs/6752d7b8707aa641045ea606?includeOutput=true

View: https://api.biosimulations.org/runs/6752d7b8707aa641045ea606

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d7b39fa297efdca198a5/download

Logs: https://api.biosimulations.org/logs/6752d7b39fa297efdca198a5?includeOutput=true

View: https://api.biosimulations.org/runs/6752d7b39fa297efdca198a5

HTTP response: 201
| +|[BIOMD0000000153](https://www.ebi.ac.uk/biomodels/BIOMD0000000153)
Fernandez2006_ModelB|
pass[BIOMD0000000153_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000153#Files)
|pass|
pass[BIOMD0000000153_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000153#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d7cf9fa297efdca198d0/download

Logs: https://api.biosimulations.org/logs/6752d7cf9fa297efdca198d0?includeOutput=true

View: https://api.biosimulations.org/runs/6752d7cf9fa297efdca198d0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d7cd9fa297efdca198c6/download

Logs: https://api.biosimulations.org/logs/6752d7cd9fa297efdca198c6?includeOutput=true

View: https://api.biosimulations.org/runs/6752d7cd9fa297efdca198c6

HTTP response: 201
| +|[BIOMD0000000154](https://www.ebi.ac.uk/biomodels/BIOMD0000000154)
Zatorsky2006_p53_Model3|
pass[BIOMD0000000154_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000154#Files)
|pass|
pass[BIOMD0000000154_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000154#Files)
|pass|
delay```Unable to support delay differential equations. The function 'delay(x, tau)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
|
FAILDownload: https://api.biosimulations.org/results/6752d7e8707aa641045ea63f/download

Logs: https://api.biosimulations.org/logs/6752d7e8707aa641045ea63f?includeOutput=true

View: https://api.biosimulations.org/runs/6752d7e8707aa641045ea63f

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(x, tau)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)

Exception type: CombineArchiveExecutionError
|
passDownload: https://api.biosimulations.org/results/6752d7e5c3054f763d54ff79/download

Logs: https://api.biosimulations.org/logs/6752d7e5c3054f763d54ff79?includeOutput=true

View: https://api.biosimulations.org/runs/6752d7e5c3054f763d54ff79

HTTP response: 201
| +|[BIOMD0000000155](https://www.ebi.ac.uk/biomodels/BIOMD0000000155)
Zatorsky2006_p53_Model6|
pass[BIOMD0000000155_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000155#Files)
|pass|
pass[BIOMD0000000155_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000155#Files)
|pass|
delay```Unable to support delay differential equations. The function 'delay(x, tau)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
|
FAILDownload: https://api.biosimulations.org/results/6752d7fac3054f763d54ff95/download

Logs: https://api.biosimulations.org/logs/6752d7fac3054f763d54ff95?includeOutput=true

View: https://api.biosimulations.org/runs/6752d7fac3054f763d54ff95

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(x, tau)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)

Exception type: CombineArchiveExecutionError
|
passDownload: https://api.biosimulations.org/results/6752d7f8c3054f763d54ff89/download

Logs: https://api.biosimulations.org/logs/6752d7f8c3054f763d54ff89?includeOutput=true

View: https://api.biosimulations.org/runs/6752d7f8c3054f763d54ff89

HTTP response: 201
| +|[BIOMD0000000156](https://www.ebi.ac.uk/biomodels/BIOMD0000000156)
Zatorsky2006_p53_Model5|
pass[BIOMD0000000156_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000156#Files)
|pass|
pass[BIOMD0000000156_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000156#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d80d707aa641045ea66b/download

Logs: https://api.biosimulations.org/logs/6752d80d707aa641045ea66b?includeOutput=true

View: https://api.biosimulations.org/runs/6752d80d707aa641045ea66b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d80b707aa641045ea663/download

Logs: https://api.biosimulations.org/logs/6752d80b707aa641045ea663?includeOutput=true

View: https://api.biosimulations.org/runs/6752d80b707aa641045ea663

HTTP response: 201
| +|[BIOMD0000000157](https://www.ebi.ac.uk/biomodels/BIOMD0000000157)
Zatorsky2006_p53_Model4|
pass[BIOMD0000000157_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000157#Files)
|pass|
pass[BIOMD0000000157_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000157#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d822c3054f763d54ffc6/download

Logs: https://api.biosimulations.org/logs/6752d822c3054f763d54ffc6?includeOutput=true

View: https://api.biosimulations.org/runs/6752d822c3054f763d54ffc6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d820707aa641045ea67d/download

Logs: https://api.biosimulations.org/logs/6752d820707aa641045ea67d?includeOutput=true

View: https://api.biosimulations.org/runs/6752d820707aa641045ea67d

HTTP response: 201
| +|[BIOMD0000000158](https://www.ebi.ac.uk/biomodels/BIOMD0000000158)
Zatorsky2006_p53_Model2|
pass[BIOMD0000000158_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000158#Files)
|pass|
pass[BIOMD0000000158_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000158#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d838c3054f763d54ffe0/download

Logs: https://api.biosimulations.org/logs/6752d838c3054f763d54ffe0?includeOutput=true

View: https://api.biosimulations.org/runs/6752d838c3054f763d54ffe0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d836c3054f763d54ffd9/download

Logs: https://api.biosimulations.org/logs/6752d836c3054f763d54ffd9?includeOutput=true

View: https://api.biosimulations.org/runs/6752d836c3054f763d54ffd9

HTTP response: 201
| +|[BIOMD0000000159](https://www.ebi.ac.uk/biomodels/BIOMD0000000159)
Zatorsky2006_p53_Model1|
pass[BIOMD0000000159_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000159#Files)
|pass|
pass[BIOMD0000000159_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000159#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d84a9fa297efdca1993a/download

Logs: https://api.biosimulations.org/logs/6752d84a9fa297efdca1993a?includeOutput=true

View: https://api.biosimulations.org/runs/6752d84a9fa297efdca1993a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d848707aa641045ea6a7/download

Logs: https://api.biosimulations.org/logs/6752d848707aa641045ea6a7?includeOutput=true

View: https://api.biosimulations.org/runs/6752d848707aa641045ea6a7

HTTP response: 201
| +|[BIOMD0000000160](https://www.ebi.ac.uk/biomodels/BIOMD0000000160)
Xie2007_CircClock|
pass[BIOMD0000000160_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000160#Files)
|pass|
pass[BIOMD0000000160_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000160#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d85f707aa641045ea6ca/download

Logs: https://api.biosimulations.org/logs/6752d85f707aa641045ea6ca?includeOutput=true

View: https://api.biosimulations.org/runs/6752d85f707aa641045ea6ca

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d85d9fa297efdca19949/download

Logs: https://api.biosimulations.org/logs/6752d85d9fa297efdca19949?includeOutput=true

View: https://api.biosimulations.org/runs/6752d85d9fa297efdca19949

HTTP response: 201
| +|[BIOMD0000000161](https://www.ebi.ac.uk/biomodels/BIOMD0000000161)
Eungdamrong2007_Ras_Activation|
pass[BIOMD0000000161_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000161#Files)
|FAIL|
pass[BIOMD0000000161_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000161#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d8759fa297efdca19961/download

Logs: https://api.biosimulations.org/logs/6752d8759fa297efdca19961?includeOutput=true

View: https://api.biosimulations.org/runs/6752d8759fa297efdca19961

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d873707aa641045ea6e1/download

Logs: https://api.biosimulations.org/logs/6752d873707aa641045ea6e1?includeOutput=true

View: https://api.biosimulations.org/runs/6752d873707aa641045ea6e1

HTTP response: 201
| +|[BIOMD0000000162](https://www.ebi.ac.uk/biomodels/BIOMD0000000162)
Hernjak2005_Calcium_Signaling|
pass[BIOMD0000000162_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000162#Files)
|pass|
pass[BIOMD0000000162_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000162#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d88d9fa297efdca1996a/download

Logs: https://api.biosimulations.org/logs/6752d88d9fa297efdca1996a?includeOutput=true

View: https://api.biosimulations.org/runs/6752d88d9fa297efdca1996a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d88b707aa641045ea6f2/download

Logs: https://api.biosimulations.org/logs/6752d88b707aa641045ea6f2?includeOutput=true

View: https://api.biosimulations.org/runs/6752d88b707aa641045ea6f2

HTTP response: 201
| +|[BIOMD0000000163](https://www.ebi.ac.uk/biomodels/BIOMD0000000163)
Zi2007_TGFbeta_signaling|
pass[BIOMD0000000163_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000163#Files)
|pass|
pass[BIOMD0000000163_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000163#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d8a2c3054f763d550039/download

Logs: https://api.biosimulations.org/logs/6752d8a2c3054f763d550039?includeOutput=true

View: https://api.biosimulations.org/runs/6752d8a2c3054f763d550039

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d8a0c3054f763d550036/download

Logs: https://api.biosimulations.org/logs/6752d8a0c3054f763d550036?includeOutput=true

View: https://api.biosimulations.org/runs/6752d8a0c3054f763d550036

HTTP response: 201
| +|[BIOMD0000000164](https://www.ebi.ac.uk/biomodels/BIOMD0000000164)
SmithAE2002_RanTransport|
pass[BIOMD0000000164_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000164#Files)
|FAIL|
pass[BIOMD0000000164_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000164#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d8b7707aa641045ea71c/download

Logs: https://api.biosimulations.org/logs/6752d8b7707aa641045ea71c?includeOutput=true

View: https://api.biosimulations.org/runs/6752d8b7707aa641045ea71c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d8b59fa297efdca19990/download

Logs: https://api.biosimulations.org/logs/6752d8b59fa297efdca19990?includeOutput=true

View: https://api.biosimulations.org/runs/6752d8b59fa297efdca19990

HTTP response: 201
| +|[BIOMD0000000165](https://www.ebi.ac.uk/biomodels/BIOMD0000000165)
Saucerman2006_PKA|
pass[BIOMD0000000165_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000165#Files)
|pass|
pass[BIOMD0000000165_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000165#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d8cd707aa641045ea73d/download

Logs: https://api.biosimulations.org/logs/6752d8cd707aa641045ea73d?includeOutput=true

View: https://api.biosimulations.org/runs/6752d8cd707aa641045ea73d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d8cb707aa641045ea737/download

Logs: https://api.biosimulations.org/logs/6752d8cb707aa641045ea737?includeOutput=true

View: https://api.biosimulations.org/runs/6752d8cb707aa641045ea737

HTTP response: 201
| +|[BIOMD0000000166](https://www.ebi.ac.uk/biomodels/BIOMD0000000166)
Zhu2007_TF_modulated_by_Calcium|
pass[BIOMD0000000166_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000166#Files)
|pass|
pass[BIOMD0000000166_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000166#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d8e2707aa641045ea755/download

Logs: https://api.biosimulations.org/logs/6752d8e2707aa641045ea755?includeOutput=true

View: https://api.biosimulations.org/runs/6752d8e2707aa641045ea755

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d8e0707aa641045ea74c/download

Logs: https://api.biosimulations.org/logs/6752d8e0707aa641045ea74c?includeOutput=true

View: https://api.biosimulations.org/runs/6752d8e0707aa641045ea74c

HTTP response: 201
| +|[BIOMD0000000167](https://www.ebi.ac.uk/biomodels/BIOMD0000000167)
Mayya2005_STATmodule|
pass[BIOMD0000000167_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000167#Files)
|pass|
pass[BIOMD0000000167_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000167#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d8f39fa297efdca199d4/download

Logs: https://api.biosimulations.org/logs/6752d8f39fa297efdca199d4?includeOutput=true

View: https://api.biosimulations.org/runs/6752d8f39fa297efdca199d4

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d8f19fa297efdca199cd/download

Logs: https://api.biosimulations.org/logs/6752d8f19fa297efdca199cd?includeOutput=true

View: https://api.biosimulations.org/runs/6752d8f19fa297efdca199cd

HTTP response: 201
| +|[BIOMD0000000168](https://www.ebi.ac.uk/biomodels/BIOMD0000000168)
Obeyesekere1999_CellCycle|
pass[BIOMD0000000168_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000168#Files)
|pass|
pass[BIOMD0000000168_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000168#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d908707aa641045ea78b/download

Logs: https://api.biosimulations.org/logs/6752d908707aa641045ea78b?includeOutput=true

View: https://api.biosimulations.org/runs/6752d908707aa641045ea78b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d9059fa297efdca199e3/download

Logs: https://api.biosimulations.org/logs/6752d9059fa297efdca199e3?includeOutput=true

View: https://api.biosimulations.org/runs/6752d9059fa297efdca199e3

HTTP response: 201
| +|[BIOMD0000000169](https://www.ebi.ac.uk/biomodels/BIOMD0000000169)
Aguda1999_CellCycle|
pass[BIOMD0000000169_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000169#Files)
|pass|
pass[BIOMD0000000169_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000169#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d91cc3054f763d5500ae/download

Logs: https://api.biosimulations.org/logs/6752d91cc3054f763d5500ae?includeOutput=true

View: https://api.biosimulations.org/runs/6752d91cc3054f763d5500ae

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d91a707aa641045ea79e/download

Logs: https://api.biosimulations.org/logs/6752d91a707aa641045ea79e?includeOutput=true

View: https://api.biosimulations.org/runs/6752d91a707aa641045ea79e

HTTP response: 201
| +|[BIOMD0000000170](https://www.ebi.ac.uk/biomodels/BIOMD0000000170)
Weimann2004_CircadianOscillator|
pass[BIOMD0000000170_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000170#Files)
|pass|
pass[BIOMD0000000170_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000170#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d931707aa641045ea7b7/download

Logs: https://api.biosimulations.org/logs/6752d931707aa641045ea7b7?includeOutput=true

View: https://api.biosimulations.org/runs/6752d931707aa641045ea7b7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d92f707aa641045ea7b4/download

Logs: https://api.biosimulations.org/logs/6752d92f707aa641045ea7b4?includeOutput=true

View: https://api.biosimulations.org/runs/6752d92f707aa641045ea7b4

HTTP response: 201
| +|[BIOMD0000000171](https://www.ebi.ac.uk/biomodels/BIOMD0000000171)
Leloup1998_CircClock_LD|
pass[BIOMD0000000171_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000171#Files)
|pass|
pass[BIOMD0000000171_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000171#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d949707aa641045ea7cf/download

Logs: https://api.biosimulations.org/logs/6752d949707aa641045ea7cf?includeOutput=true

View: https://api.biosimulations.org/runs/6752d949707aa641045ea7cf

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d947c3054f763d5500ce/download

Logs: https://api.biosimulations.org/logs/6752d947c3054f763d5500ce?includeOutput=true

View: https://api.biosimulations.org/runs/6752d947c3054f763d5500ce

HTTP response: 201
| +|[BIOMD0000000172](https://www.ebi.ac.uk/biomodels/BIOMD0000000172)
Pritchard2002_glycolysis|
pass[BIOMD0000000172_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000172#Files)
|pass|
pass[BIOMD0000000172_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000172#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d95f707aa641045ea7ec/download

Logs: https://api.biosimulations.org/logs/6752d95f707aa641045ea7ec?includeOutput=true

View: https://api.biosimulations.org/runs/6752d95f707aa641045ea7ec

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d95d707aa641045ea7e9/download

Logs: https://api.biosimulations.org/logs/6752d95d707aa641045ea7e9?includeOutput=true

View: https://api.biosimulations.org/runs/6752d95d707aa641045ea7e9

HTTP response: 201
| +|
[BIOMD0000000174](https://www.ebi.ac.uk/biomodels/BIOMD0000000174)
Del_Conte_Zerial2008_Rab5_Rab7Del_Conte_Zerial2008_Rab5_Rab7_cut_out_switch
|
pass[BIOMD0000000174_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000174#Files)
|pass|
pass[BIOMD0000000174_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000174#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d974c3054f763d5500f6/download

Logs: https://api.biosimulations.org/logs/6752d974c3054f763d5500f6?includeOutput=true

View: https://api.biosimulations.org/runs/6752d974c3054f763d5500f6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d972c3054f763d5500f3/download

Logs: https://api.biosimulations.org/logs/6752d972c3054f763d5500f3?includeOutput=true

View: https://api.biosimulations.org/runs/6752d972c3054f763d5500f3

HTTP response: 201
| +|[BIOMD0000000175](https://www.ebi.ac.uk/biomodels/BIOMD0000000175)
Birtwistle2007_ErbB_Signalling|
pass[BIOMD0000000175_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000175#Files)
|pass|
pass[BIOMD0000000175_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000175#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d98bc3054f763d550102/download

Logs: https://api.biosimulations.org/logs/6752d98bc3054f763d550102?includeOutput=true

View: https://api.biosimulations.org/runs/6752d98bc3054f763d550102

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d989707aa641045ea81d/download

Logs: https://api.biosimulations.org/logs/6752d989707aa641045ea81d?includeOutput=true

View: https://api.biosimulations.org/runs/6752d989707aa641045ea81d

HTTP response: 201
| +|[BIOMD0000000176](https://www.ebi.ac.uk/biomodels/BIOMD0000000176)
Conant2007_WGD_glycolysis_2A3AB|
pass[BIOMD0000000176_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000176#Files)
|pass|
pass[BIOMD0000000176_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000176#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d9ad9fa297efdca19a75/download

Logs: https://api.biosimulations.org/logs/6752d9ad9fa297efdca19a75?includeOutput=true

View: https://api.biosimulations.org/runs/6752d9ad9fa297efdca19a75

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d9abc3054f763d550118/download

Logs: https://api.biosimulations.org/logs/6752d9abc3054f763d550118?includeOutput=true

View: https://api.biosimulations.org/runs/6752d9abc3054f763d550118

HTTP response: 201
| +|[BIOMD0000000177](https://www.ebi.ac.uk/biomodels/BIOMD0000000177)
Conant2007_glycolysis_2C|
pass[BIOMD0000000177_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000177#Files)
|pass|
pass[BIOMD0000000177_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000177#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d9c3707aa641045ea848/download

Logs: https://api.biosimulations.org/logs/6752d9c3707aa641045ea848?includeOutput=true

View: https://api.biosimulations.org/runs/6752d9c3707aa641045ea848

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d9c0707aa641045ea845/download

Logs: https://api.biosimulations.org/logs/6752d9c0707aa641045ea845?includeOutput=true

View: https://api.biosimulations.org/runs/6752d9c0707aa641045ea845

HTTP response: 201
| +|
[BIOMD0000000178](https://www.ebi.ac.uk/biomodels/BIOMD0000000178)
Lebeda2008 - BoTN Paralysis (4Lebeda2008 - BoTN Paralysis (4 step model)
|
pass[BIOMD0000000178_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000178#Files)
|pass|
pass[BIOMD0000000178_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000178#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d9d99fa297efdca19a91/download

Logs: https://api.biosimulations.org/logs/6752d9d99fa297efdca19a91?includeOutput=true

View: https://api.biosimulations.org/runs/6752d9d99fa297efdca19a91

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d9d7c3054f763d550144/download

Logs: https://api.biosimulations.org/logs/6752d9d7c3054f763d550144?includeOutput=true

View: https://api.biosimulations.org/runs/6752d9d7c3054f763d550144

HTTP response: 201
| +|
[BIOMD0000000179](https://www.ebi.ac.uk/biomodels/BIOMD0000000179)
Kim2007_CellularMemory_AsymmetKim2007_CellularMemory_AsymmetricModel
|
pass[BIOMD0000000179_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000179#Files)
|pass|
pass[BIOMD0000000179_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000179#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752d9f0c3054f763d55018d/download

Logs: https://api.biosimulations.org/logs/6752d9f0c3054f763d55018d?includeOutput=true

View: https://api.biosimulations.org/runs/6752d9f0c3054f763d55018d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752d9ed9fa297efdca19aad/download

Logs: https://api.biosimulations.org/logs/6752d9ed9fa297efdca19aad?includeOutput=true

View: https://api.biosimulations.org/runs/6752d9ed9fa297efdca19aad

HTTP response: 201
| +|
[BIOMD0000000180](https://www.ebi.ac.uk/biomodels/BIOMD0000000180)
Kim2007_CellularMemory_SymmetrKim2007_CellularMemory_SymmetricModel
|
pass[BIOMD0000000180_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000180#Files)
|pass|
pass[BIOMD0000000180_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000180#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752da06707aa641045ea89d/download

Logs: https://api.biosimulations.org/logs/6752da06707aa641045ea89d?includeOutput=true

View: https://api.biosimulations.org/runs/6752da06707aa641045ea89d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752da039fa297efdca19ac4/download

Logs: https://api.biosimulations.org/logs/6752da039fa297efdca19ac4?includeOutput=true

View: https://api.biosimulations.org/runs/6752da039fa297efdca19ac4

HTTP response: 201
| +|[BIOMD0000000181](https://www.ebi.ac.uk/biomodels/BIOMD0000000181)
Sriram2007_CellCycle|
pass[BIOMD0000000181_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000181#Files)
|pass|
pass[BIOMD0000000181_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000181#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752da18c3054f763d5501bd/download

Logs: https://api.biosimulations.org/logs/6752da18c3054f763d5501bd?includeOutput=true

View: https://api.biosimulations.org/runs/6752da18c3054f763d5501bd

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752da16707aa641045ea8a9/download

Logs: https://api.biosimulations.org/logs/6752da16707aa641045ea8a9?includeOutput=true

View: https://api.biosimulations.org/runs/6752da16707aa641045ea8a9

HTTP response: 201
| +|
[BIOMD0000000182](https://www.ebi.ac.uk/biomodels/BIOMD0000000182)
Neves2008 - Role of cell shapeNeves2008 - Role of cell shape and size in controlling intracellular signalling
|
pass[BIOMD0000000182_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000182#Files)
|pass|
pass[BIOMD0000000182_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000182#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752da2d707aa641045ea8d2/download

Logs: https://api.biosimulations.org/logs/6752da2d707aa641045ea8d2?includeOutput=true

View: https://api.biosimulations.org/runs/6752da2d707aa641045ea8d2

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752da2c707aa641045ea8cf/download

Logs: https://api.biosimulations.org/logs/6752da2c707aa641045ea8cf?includeOutput=true

View: https://api.biosimulations.org/runs/6752da2c707aa641045ea8cf

HTTP response: 201
| +|[BIOMD0000000183](https://www.ebi.ac.uk/biomodels/BIOMD0000000183)
Stefan2008 - calmodulin allostery|
pass[BIOMD0000000183_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000183#Files)
|pass|
pass[BIOMD0000000183_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000183#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752da4a9fa297efdca19af7/download

Logs: https://api.biosimulations.org/logs/6752da4a9fa297efdca19af7?includeOutput=true

View: https://api.biosimulations.org/runs/6752da4a9fa297efdca19af7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752da479fa297efdca19af4/download

Logs: https://api.biosimulations.org/logs/6752da479fa297efdca19af4?includeOutput=true

View: https://api.biosimulations.org/runs/6752da479fa297efdca19af4

HTTP response: 201
| +|[BIOMD0000000184](https://www.ebi.ac.uk/biomodels/BIOMD0000000184)
Lavrentovich2008_Ca_Oscillations|
pass[BIOMD0000000184_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000184#Files)
|FAIL|
pass[BIOMD0000000184_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000184#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752da6d707aa641045ea8fe/download

Logs: https://api.biosimulations.org/logs/6752da6d707aa641045ea8fe?includeOutput=true

View: https://api.biosimulations.org/runs/6752da6d707aa641045ea8fe

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752da6b9fa297efdca19b0b/download

Logs: https://api.biosimulations.org/logs/6752da6b9fa297efdca19b0b?includeOutput=true

View: https://api.biosimulations.org/runs/6752da6b9fa297efdca19b0b

HTTP response: 201
| +|[BIOMD0000000185](https://www.ebi.ac.uk/biomodels/BIOMD0000000185)
Locke2008_Circadian_Clock|
pass[BIOMD0000000185_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000185#Files)
|FAIL|
pass[BIOMD0000000185_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000185#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752da82c3054f763d550214/download

Logs: https://api.biosimulations.org/logs/6752da82c3054f763d550214?includeOutput=true

View: https://api.biosimulations.org/runs/6752da82c3054f763d550214

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752da80c3054f763d55020e/download

Logs: https://api.biosimulations.org/logs/6752da80c3054f763d55020e?includeOutput=true

View: https://api.biosimulations.org/runs/6752da80c3054f763d55020e

HTTP response: 201
| +|
[BIOMD0000000186](https://www.ebi.ac.uk/biomodels/BIOMD0000000186)
Ibrahim2008 - Mitotic Spindle Ibrahim2008 - Mitotic Spindle Assembly Checkpoint - Dissociation variant
|
pass[BIOMD0000000186_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000186#Files)
|pass|
pass[BIOMD0000000186_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000186#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752da99707aa641045ea92c/download

Logs: https://api.biosimulations.org/logs/6752da99707aa641045ea92c?includeOutput=true

View: https://api.biosimulations.org/runs/6752da99707aa641045ea92c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752da96c3054f763d550222/download

Logs: https://api.biosimulations.org/logs/6752da96c3054f763d550222?includeOutput=true

View: https://api.biosimulations.org/runs/6752da96c3054f763d550222

HTTP response: 201
| +|
[BIOMD0000000187](https://www.ebi.ac.uk/biomodels/BIOMD0000000187)
Ibrahim2008 - Mitotic Spindle Ibrahim2008 - Mitotic Spindle Assembly Checkpoint - Convey variant
|
pass[BIOMD0000000187_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000187#Files)
|pass|
pass[BIOMD0000000187_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000187#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752daaf9fa297efdca19b49/download

Logs: https://api.biosimulations.org/logs/6752daaf9fa297efdca19b49?includeOutput=true

View: https://api.biosimulations.org/runs/6752daaf9fa297efdca19b49

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752daac707aa641045ea93e/download

Logs: https://api.biosimulations.org/logs/6752daac707aa641045ea93e?includeOutput=true

View: https://api.biosimulations.org/runs/6752daac707aa641045ea93e

HTTP response: 201
| +|
[BIOMD0000000188](https://www.ebi.ac.uk/biomodels/BIOMD0000000188)
Proctor2008 - p53/Mdm2 circuitProctor2008 - p53/Mdm2 circuit - p53 stabilisation by ATM
|
pass[BIOMD0000000188_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000188#Files)
|pass|
pass[BIOMD0000000188_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000188#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dac19fa297efdca19b60/download

Logs: https://api.biosimulations.org/logs/6752dac19fa297efdca19b60?includeOutput=true

View: https://api.biosimulations.org/runs/6752dac19fa297efdca19b60

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dabfc3054f763d550245/download

Logs: https://api.biosimulations.org/logs/6752dabfc3054f763d550245?includeOutput=true

View: https://api.biosimulations.org/runs/6752dabfc3054f763d550245

HTTP response: 201
| +|
[BIOMD0000000189](https://www.ebi.ac.uk/biomodels/BIOMD0000000189)
Proctor2008 - p53/Mdm2 circuitProctor2008 - p53/Mdm2 circuit - p53 stablisation by p14ARF
|
pass[BIOMD0000000189_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000189#Files)
|pass|
pass[BIOMD0000000189_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000189#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dad7707aa641045ea96e/download

Logs: https://api.biosimulations.org/logs/6752dad7707aa641045ea96e?includeOutput=true

View: https://api.biosimulations.org/runs/6752dad7707aa641045ea96e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dad5c3054f763d55025d/download

Logs: https://api.biosimulations.org/logs/6752dad5c3054f763d55025d?includeOutput=true

View: https://api.biosimulations.org/runs/6752dad5c3054f763d55025d

HTTP response: 201
| +|
[BIOMD0000000190](https://www.ebi.ac.uk/biomodels/BIOMD0000000190)
Rodriguez-Caso2006_Polyamine_MRodriguez-Caso2006_Polyamine_Metabolism
|
pass[BIOMD0000000190_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000190#Files)
|pass|
pass[BIOMD0000000190_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000190#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752daedc3054f763d55026d/download

Logs: https://api.biosimulations.org/logs/6752daedc3054f763d55026d?includeOutput=true

View: https://api.biosimulations.org/runs/6752daedc3054f763d55026d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752daeac3054f763d550268/download

Logs: https://api.biosimulations.org/logs/6752daeac3054f763d550268?includeOutput=true

View: https://api.biosimulations.org/runs/6752daeac3054f763d550268

HTTP response: 201
| +|[BIOMD0000000191](https://www.ebi.ac.uk/biomodels/BIOMD0000000191)
Montañez2008_Arginine_catabolism|
pass[BIOMD0000000191_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000191#Files)
|pass|
pass[BIOMD0000000191_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000191#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752db03707aa641045ea990/download

Logs: https://api.biosimulations.org/logs/6752db03707aa641045ea990?includeOutput=true

View: https://api.biosimulations.org/runs/6752db03707aa641045ea990

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752db009fa297efdca19bb6/download

Logs: https://api.biosimulations.org/logs/6752db009fa297efdca19bb6?includeOutput=true

View: https://api.biosimulations.org/runs/6752db009fa297efdca19bb6

HTTP response: 201
| +|[BIOMD0000000192](https://www.ebi.ac.uk/biomodels/BIOMD0000000192)
Görlich2003_RanGTP_gradient|
pass[BIOMD0000000192_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000192#Files)
|pass|
pass[BIOMD0000000192_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000192#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752db18c3054f763d55028f/download

Logs: https://api.biosimulations.org/logs/6752db18c3054f763d55028f?includeOutput=true

View: https://api.biosimulations.org/runs/6752db18c3054f763d55028f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752db16c3054f763d55028c/download

Logs: https://api.biosimulations.org/logs/6752db16c3054f763d55028c?includeOutput=true

View: https://api.biosimulations.org/runs/6752db16c3054f763d55028c

HTTP response: 201
| +|[BIOMD0000000193](https://www.ebi.ac.uk/biomodels/BIOMD0000000193)
Ibrahim2008_MCC_assembly_model_KDM|
pass[BIOMD0000000193_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000193#Files)
|pass|
pass[BIOMD0000000193_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000193#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752db2c707aa641045ea9b7/download

Logs: https://api.biosimulations.org/logs/6752db2c707aa641045ea9b7?includeOutput=true

View: https://api.biosimulations.org/runs/6752db2c707aa641045ea9b7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752db2a9fa297efdca19be5/download

Logs: https://api.biosimulations.org/logs/6752db2a9fa297efdca19be5?includeOutput=true

View: https://api.biosimulations.org/runs/6752db2a9fa297efdca19be5

HTTP response: 201
| +|
[BIOMD0000000194](https://www.ebi.ac.uk/biomodels/BIOMD0000000194)
Ibrahim2008_Cdc20_Sequestring_Ibrahim2008_Cdc20_Sequestring_Template_Model
|
pass[BIOMD0000000194_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000194#Files)
|pass|
pass[BIOMD0000000194_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000194#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752db40707aa641045ea9c7/download

Logs: https://api.biosimulations.org/logs/6752db40707aa641045ea9c7?includeOutput=true

View: https://api.biosimulations.org/runs/6752db40707aa641045ea9c7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752db3dc3054f763d5502b3/download

Logs: https://api.biosimulations.org/logs/6752db3dc3054f763d5502b3?includeOutput=true

View: https://api.biosimulations.org/runs/6752db3dc3054f763d5502b3

HTTP response: 201
| +|[BIOMD0000000195](https://www.ebi.ac.uk/biomodels/BIOMD0000000195)
Tyson2001_Cell_Cycle_Regulation|
pass[BIOMD0000000195_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000195#Files)
|pass|
pass[BIOMD0000000195_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000195#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752db53c3054f763d5502db/download

Logs: https://api.biosimulations.org/logs/6752db53c3054f763d5502db?includeOutput=true

View: https://api.biosimulations.org/runs/6752db53c3054f763d5502db

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752db51707aa641045ea9d2/download

Logs: https://api.biosimulations.org/logs/6752db51707aa641045ea9d2?includeOutput=true

View: https://api.biosimulations.org/runs/6752db51707aa641045ea9d2

HTTP response: 201
| +|[BIOMD0000000196](https://www.ebi.ac.uk/biomodels/BIOMD0000000196)
Srividhya2006_CellCycle|
pass[BIOMD0000000196_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000196#Files)
|pass|
pass[BIOMD0000000196_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000196#Files)
|pass|
delay```Unable to support delay differential equations. The function 'delay(x3, tau)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
|
FAILDownload: https://api.biosimulations.org/results/6752db679fa297efdca19c1d/download

Logs: https://api.biosimulations.org/logs/6752db679fa297efdca19c1d?includeOutput=true

View: https://api.biosimulations.org/runs/6752db679fa297efdca19c1d

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(x3, tau)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)

Exception type: CombineArchiveExecutionError
|
passDownload: https://api.biosimulations.org/results/6752db649fa297efdca19c1a/download

Logs: https://api.biosimulations.org/logs/6752db649fa297efdca19c1a?includeOutput=true

View: https://api.biosimulations.org/runs/6752db649fa297efdca19c1a

HTTP response: 201
| +|[BIOMD0000000197](https://www.ebi.ac.uk/biomodels/BIOMD0000000197)
Bartholome2007_MDCKII|
pass[BIOMD0000000197_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000197#Files)
|pass|
pass[BIOMD0000000197_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000197#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752db79c3054f763d550309/download

Logs: https://api.biosimulations.org/logs/6752db79c3054f763d550309?includeOutput=true

View: https://api.biosimulations.org/runs/6752db79c3054f763d550309

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752db76707aa641045ea9f5/download

Logs: https://api.biosimulations.org/logs/6752db76707aa641045ea9f5?includeOutput=true

View: https://api.biosimulations.org/runs/6752db76707aa641045ea9f5

HTTP response: 201
| +|
[BIOMD0000000198](https://www.ebi.ac.uk/biomodels/BIOMD0000000198)
Stone1996 - activation of soluStone1996 - activation of soluble guanylate cyclase by nitric oxide
|
pass[BIOMD0000000198_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000198#Files)
|pass|
pass[BIOMD0000000198_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000198#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752db8cc3054f763d550323/download

Logs: https://api.biosimulations.org/logs/6752db8cc3054f763d550323?includeOutput=true

View: https://api.biosimulations.org/runs/6752db8cc3054f763d550323

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752db8a707aa641045eaa07/download

Logs: https://api.biosimulations.org/logs/6752db8a707aa641045eaa07?includeOutput=true

View: https://api.biosimulations.org/runs/6752db8a707aa641045eaa07

HTTP response: 201
| +|
[BIOMD0000000199](https://www.ebi.ac.uk/biomodels/BIOMD0000000199)
Santolini2001_nNOS_Mechanism_RSantolini2001_nNOS_Mechanism_Regulation
|
pass[BIOMD0000000199_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000199#Files)
|pass|
pass[BIOMD0000000199_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000199#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dba1c3054f763d55033c/download

Logs: https://api.biosimulations.org/logs/6752dba1c3054f763d55033c?includeOutput=true

View: https://api.biosimulations.org/runs/6752dba1c3054f763d55033c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752db9e9fa297efdca19c53/download

Logs: https://api.biosimulations.org/logs/6752db9e9fa297efdca19c53?includeOutput=true

View: https://api.biosimulations.org/runs/6752db9e9fa297efdca19c53

HTTP response: 201
| +|
[BIOMD0000000200](https://www.ebi.ac.uk/biomodels/BIOMD0000000200)
Bray1995_chemotaxis_receptorliBray1995_chemotaxis_receptorlinkedcomplex
|
pass[BIOMD0000000200_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000200#Files)
|FAIL|
pass[BIOMD0000000200_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000200#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dbb5707aa641045eaa3e/download

Logs: https://api.biosimulations.org/logs/6752dbb5707aa641045eaa3e?includeOutput=true

View: https://api.biosimulations.org/runs/6752dbb5707aa641045eaa3e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dbb2707aa641045eaa3b/download

Logs: https://api.biosimulations.org/logs/6752dbb2707aa641045eaa3b?includeOutput=true

View: https://api.biosimulations.org/runs/6752dbb2707aa641045eaa3b

HTTP response: 201
| +|
[BIOMD0000000201](https://www.ebi.ac.uk/biomodels/BIOMD0000000201)
Goldbeter2008_Somite_SegmentatGoldbeter2008_Somite_Segmentation_Clock_Notch_Wnt_FGF
|
pass[BIOMD0000000201_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000201#Files)
|pass|
pass[BIOMD0000000201_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000201#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dbcd9fa297efdca19c7c/download

Logs: https://api.biosimulations.org/logs/6752dbcd9fa297efdca19c7c?includeOutput=true

View: https://api.biosimulations.org/runs/6752dbcd9fa297efdca19c7c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dbcb707aa641045eaa50/download

Logs: https://api.biosimulations.org/logs/6752dbcb707aa641045eaa50?includeOutput=true

View: https://api.biosimulations.org/runs/6752dbcb707aa641045eaa50

HTTP response: 201
| +|[BIOMD0000000202](https://www.ebi.ac.uk/biomodels/BIOMD0000000202)
ChenXF2008_CICR|
pass[BIOMD0000000202_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000202#Files)
|pass|
pass[BIOMD0000000202_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000202#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dbe4707aa641045eaa73/download

Logs: https://api.biosimulations.org/logs/6752dbe4707aa641045eaa73?includeOutput=true

View: https://api.biosimulations.org/runs/6752dbe4707aa641045eaa73

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dbe29fa297efdca19c8a/download

Logs: https://api.biosimulations.org/logs/6752dbe29fa297efdca19c8a?includeOutput=true

View: https://api.biosimulations.org/runs/6752dbe29fa297efdca19c8a

HTTP response: 201
| +|
[BIOMD0000000203](https://www.ebi.ac.uk/biomodels/BIOMD0000000203)
Chickarmane2006 - Stem cell swChickarmane2006 - Stem cell switch reversible
|
pass[BIOMD0000000203_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000203#Files)
|pass|
pass[BIOMD0000000203_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000203#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dbfb707aa641045eaa82/download

Logs: https://api.biosimulations.org/logs/6752dbfb707aa641045eaa82?includeOutput=true

View: https://api.biosimulations.org/runs/6752dbfb707aa641045eaa82

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dbf8c3054f763d55038f/download

Logs: https://api.biosimulations.org/logs/6752dbf8c3054f763d55038f?includeOutput=true

View: https://api.biosimulations.org/runs/6752dbf8c3054f763d55038f

HTTP response: 201
| +|
[BIOMD0000000204](https://www.ebi.ac.uk/biomodels/BIOMD0000000204)
Chickarmane2006 - Stem cell swChickarmane2006 - Stem cell switch irreversible
|
pass[BIOMD0000000204_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000204#Files)
|pass|
pass[BIOMD0000000204_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000204#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dc11c3054f763d5503a0/download

Logs: https://api.biosimulations.org/logs/6752dc11c3054f763d5503a0?includeOutput=true

View: https://api.biosimulations.org/runs/6752dc11c3054f763d5503a0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dc0e9fa297efdca19ca8/download

Logs: https://api.biosimulations.org/logs/6752dc0e9fa297efdca19ca8?includeOutput=true

View: https://api.biosimulations.org/runs/6752dc0e9fa297efdca19ca8

HTTP response: 201
| +|[BIOMD0000000205](https://www.ebi.ac.uk/biomodels/BIOMD0000000205)
Ung2008_EGFR_Endocytosis|
pass[BIOMD0000000205_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000205#Files)
|pass|
pass[BIOMD0000000205_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000205#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dc27c3054f763d5503b1/download

Logs: https://api.biosimulations.org/logs/6752dc27c3054f763d5503b1?includeOutput=true

View: https://api.biosimulations.org/runs/6752dc27c3054f763d5503b1

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dc249fa297efdca19cda/download

Logs: https://api.biosimulations.org/logs/6752dc249fa297efdca19cda?includeOutput=true

View: https://api.biosimulations.org/runs/6752dc249fa297efdca19cda

HTTP response: 201
| +|[BIOMD0000000206](https://www.ebi.ac.uk/biomodels/BIOMD0000000206)
Wolf2000_Glycolytic_Oscillations|
pass[BIOMD0000000206_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000206#Files)
|pass|
pass[BIOMD0000000206_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000206#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dc4ec3054f763d5503c7/download

Logs: https://api.biosimulations.org/logs/6752dc4ec3054f763d5503c7?includeOutput=true

View: https://api.biosimulations.org/runs/6752dc4ec3054f763d5503c7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dc4b9fa297efdca19cf7/download

Logs: https://api.biosimulations.org/logs/6752dc4b9fa297efdca19cf7?includeOutput=true

View: https://api.biosimulations.org/runs/6752dc4b9fa297efdca19cf7

HTTP response: 201
| +|[BIOMD0000000207](https://www.ebi.ac.uk/biomodels/BIOMD0000000207)
Romond1999_CellCycle|
pass[BIOMD0000000207_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000207#Files)
|FAIL|
pass[BIOMD0000000207_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000207#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dc62707aa641045eaad0/download

Logs: https://api.biosimulations.org/logs/6752dc62707aa641045eaad0?includeOutput=true

View: https://api.biosimulations.org/runs/6752dc62707aa641045eaad0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dc60707aa641045eaacc/download

Logs: https://api.biosimulations.org/logs/6752dc60707aa641045eaacc?includeOutput=true

View: https://api.biosimulations.org/runs/6752dc60707aa641045eaacc

HTTP response: 201
| +|[BIOMD0000000208](https://www.ebi.ac.uk/biomodels/BIOMD0000000208)
Deineko2003_CellCycle|
pass[BIOMD0000000208_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000208#Files)
|pass|
pass[BIOMD0000000208_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000208#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dc769fa297efdca19d23/download

Logs: https://api.biosimulations.org/logs/6752dc769fa297efdca19d23?includeOutput=true

View: https://api.biosimulations.org/runs/6752dc769fa297efdca19d23

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dc74c3054f763d5503ef/download

Logs: https://api.biosimulations.org/logs/6752dc74c3054f763d5503ef?includeOutput=true

View: https://api.biosimulations.org/runs/6752dc74c3054f763d5503ef

HTTP response: 201
| +|
[BIOMD0000000209](https://www.ebi.ac.uk/biomodels/BIOMD0000000209)
Chickarmane2008 - Stem cell liChickarmane2008 - Stem cell lineage determination
|
pass[BIOMD0000000209_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000209#Files)
|pass|
pass[BIOMD0000000209_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000209#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dc89707aa641045eab03/download

Logs: https://api.biosimulations.org/logs/6752dc89707aa641045eab03?includeOutput=true

View: https://api.biosimulations.org/runs/6752dc89707aa641045eab03

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dc87c3054f763d5503fc/download

Logs: https://api.biosimulations.org/logs/6752dc87c3054f763d5503fc?includeOutput=true

View: https://api.biosimulations.org/runs/6752dc87c3054f763d5503fc

HTTP response: 201
| +|
[BIOMD0000000210](https://www.ebi.ac.uk/biomodels/BIOMD0000000210)
Chickarmane2008 - Stem cell liChickarmane2008 - Stem cell lineage - NANOG GATA-6 switch
|
pass[BIOMD0000000210_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000210#Files)
|pass|
pass[BIOMD0000000210_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000210#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dc9ec3054f763d55042b/download

Logs: https://api.biosimulations.org/logs/6752dc9ec3054f763d55042b?includeOutput=true

View: https://api.biosimulations.org/runs/6752dc9ec3054f763d55042b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dc9c9fa297efdca19d66/download

Logs: https://api.biosimulations.org/logs/6752dc9c9fa297efdca19d66?includeOutput=true

View: https://api.biosimulations.org/runs/6752dc9c9fa297efdca19d66

HTTP response: 201
| +|[BIOMD0000000211](https://www.ebi.ac.uk/biomodels/BIOMD0000000211)
Albert2005_Glycolysis|
pass[BIOMD0000000211_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000211#Files)
|pass|
pass[BIOMD0000000211_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000211#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dcb29fa297efdca19d7d/download

Logs: https://api.biosimulations.org/logs/6752dcb29fa297efdca19d7d?includeOutput=true

View: https://api.biosimulations.org/runs/6752dcb29fa297efdca19d7d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dcb0c3054f763d550440/download

Logs: https://api.biosimulations.org/logs/6752dcb0c3054f763d550440?includeOutput=true

View: https://api.biosimulations.org/runs/6752dcb0c3054f763d550440

HTTP response: 201
| +|[BIOMD0000000212](https://www.ebi.ac.uk/biomodels/BIOMD0000000212)
Curien2009_Aspartate_Metabolism|
pass[BIOMD0000000212_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000212#Files)
|FAIL|
pass[BIOMD0000000212_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000212#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dcc9c3054f763d550451/download

Logs: https://api.biosimulations.org/logs/6752dcc9c3054f763d550451?includeOutput=true

View: https://api.biosimulations.org/runs/6752dcc9c3054f763d550451

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dcc79fa297efdca19d8a/download

Logs: https://api.biosimulations.org/logs/6752dcc79fa297efdca19d8a?includeOutput=true

View: https://api.biosimulations.org/runs/6752dcc79fa297efdca19d8a

HTTP response: 201
| +|[BIOMD0000000213](https://www.ebi.ac.uk/biomodels/BIOMD0000000213)
Nijhout2004_Folate_Cycle|
pass[BIOMD0000000213_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000213#Files)
|pass|
pass[BIOMD0000000213_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000213#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dce0c3054f763d550474/download

Logs: https://api.biosimulations.org/logs/6752dce0c3054f763d550474?includeOutput=true

View: https://api.biosimulations.org/runs/6752dce0c3054f763d550474

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dcddc3054f763d550471/download

Logs: https://api.biosimulations.org/logs/6752dcddc3054f763d550471?includeOutput=true

View: https://api.biosimulations.org/runs/6752dcddc3054f763d550471

HTTP response: 201
| +|[BIOMD0000000214](https://www.ebi.ac.uk/biomodels/BIOMD0000000214)
Akman2008_Circadian_Clock_Model2|
pass[BIOMD0000000214_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000214#Files)
|FAIL|
pass[BIOMD0000000214_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000214#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dcf4707aa641045eab65/download

Logs: https://api.biosimulations.org/logs/6752dcf4707aa641045eab65?includeOutput=true

View: https://api.biosimulations.org/runs/6752dcf4707aa641045eab65

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dcf19fa297efdca19da5/download

Logs: https://api.biosimulations.org/logs/6752dcf19fa297efdca19da5?includeOutput=true

View: https://api.biosimulations.org/runs/6752dcf19fa297efdca19da5

HTTP response: 201
| +|[BIOMD0000000215](https://www.ebi.ac.uk/biomodels/BIOMD0000000215)
Schulz2009_Th1_differentiation|
pass[BIOMD0000000215_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000215#Files)
|pass|
pass[BIOMD0000000215_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000215#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dd089fa297efdca19dc5/download

Logs: https://api.biosimulations.org/logs/6752dd089fa297efdca19dc5?includeOutput=true

View: https://api.biosimulations.org/runs/6752dd089fa297efdca19dc5

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dd05707aa641045eab6c/download

Logs: https://api.biosimulations.org/logs/6752dd05707aa641045eab6c?includeOutput=true

View: https://api.biosimulations.org/runs/6752dd05707aa641045eab6c

HTTP response: 201
| +|[BIOMD0000000216](https://www.ebi.ac.uk/biomodels/BIOMD0000000216)
Hong2009_CircadianClock|
pass[BIOMD0000000216_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000216#Files)
|pass|
pass[BIOMD0000000216_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000216#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dd1c707aa641045eab81/download

Logs: https://api.biosimulations.org/logs/6752dd1c707aa641045eab81?includeOutput=true

View: https://api.biosimulations.org/runs/6752dd1c707aa641045eab81

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dd199fa297efdca19dd9/download

Logs: https://api.biosimulations.org/logs/6752dd199fa297efdca19dd9?includeOutput=true

View: https://api.biosimulations.org/runs/6752dd199fa297efdca19dd9

HTTP response: 201
| +|[BIOMD0000000217](https://www.ebi.ac.uk/biomodels/BIOMD0000000217)
Bruggeman2005_AmmoniumAssimilation|
pass[BIOMD0000000217_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000217#Files)
|pass|
pass[BIOMD0000000217_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000217#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dd32c3054f763d5504c2/download

Logs: https://api.biosimulations.org/logs/6752dd32c3054f763d5504c2?includeOutput=true

View: https://api.biosimulations.org/runs/6752dd32c3054f763d5504c2

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dd30707aa641045eab9a/download

Logs: https://api.biosimulations.org/logs/6752dd30707aa641045eab9a?includeOutput=true

View: https://api.biosimulations.org/runs/6752dd30707aa641045eab9a

HTTP response: 201
| +|[BIOMD0000000218](https://www.ebi.ac.uk/biomodels/BIOMD0000000218)
Singh2006_TCA_mtu_model2|
pass[BIOMD0000000218_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000218#Files)
|pass|
pass[BIOMD0000000218_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000218#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dd49707aa641045eabb0/download

Logs: https://api.biosimulations.org/logs/6752dd49707aa641045eabb0?includeOutput=true

View: https://api.biosimulations.org/runs/6752dd49707aa641045eabb0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dd469fa297efdca19e07/download

Logs: https://api.biosimulations.org/logs/6752dd469fa297efdca19e07?includeOutput=true

View: https://api.biosimulations.org/runs/6752dd469fa297efdca19e07

HTTP response: 201
| +|[BIOMD0000000219](https://www.ebi.ac.uk/biomodels/BIOMD0000000219)
Singh2006_TCA_mtu_model1|
pass[BIOMD0000000219_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000219#Files)
|pass|
pass[BIOMD0000000219_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000219#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dd5f707aa641045eabc0/download

Logs: https://api.biosimulations.org/logs/6752dd5f707aa641045eabc0?includeOutput=true

View: https://api.biosimulations.org/runs/6752dd5f707aa641045eabc0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dd5c9fa297efdca19e13/download

Logs: https://api.biosimulations.org/logs/6752dd5c9fa297efdca19e13?includeOutput=true

View: https://api.biosimulations.org/runs/6752dd5c9fa297efdca19e13

HTTP response: 201
| +|[BIOMD0000000220](https://www.ebi.ac.uk/biomodels/BIOMD0000000220)
Albeck2008_extrinsic_apoptosis|
pass[BIOMD0000000220_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000220#Files)
|pass|
pass[BIOMD0000000220_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000220#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dd75c3054f763d550513/download

Logs: https://api.biosimulations.org/logs/6752dd75c3054f763d550513?includeOutput=true

View: https://api.biosimulations.org/runs/6752dd75c3054f763d550513

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dd72c3054f763d550510/download

Logs: https://api.biosimulations.org/logs/6752dd72c3054f763d550510?includeOutput=true

View: https://api.biosimulations.org/runs/6752dd72c3054f763d550510

HTTP response: 201
| +|[BIOMD0000000221](https://www.ebi.ac.uk/biomodels/BIOMD0000000221)
Singh2006_TCA_Ecoli_acetate|
pass[BIOMD0000000221_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000221#Files)
|pass|
pass[BIOMD0000000221_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000221#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dd8f9fa297efdca19e41/download

Logs: https://api.biosimulations.org/logs/6752dd8f9fa297efdca19e41?includeOutput=true

View: https://api.biosimulations.org/runs/6752dd8f9fa297efdca19e41

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dd8d707aa641045eabe2/download

Logs: https://api.biosimulations.org/logs/6752dd8d707aa641045eabe2?includeOutput=true

View: https://api.biosimulations.org/runs/6752dd8d707aa641045eabe2

HTTP response: 201
| +|[BIOMD0000000222](https://www.ebi.ac.uk/biomodels/BIOMD0000000222)
Singh2006_TCA_Ecoli_glucose|
pass[BIOMD0000000222_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000222#Files)
|pass|
pass[BIOMD0000000222_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000222#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dda29fa297efdca19e4f/download

Logs: https://api.biosimulations.org/logs/6752dda29fa297efdca19e4f?includeOutput=true

View: https://api.biosimulations.org/runs/6752dda29fa297efdca19e4f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dda0c3054f763d55052e/download

Logs: https://api.biosimulations.org/logs/6752dda0c3054f763d55052e?includeOutput=true

View: https://api.biosimulations.org/runs/6752dda0c3054f763d55052e

HTTP response: 201
| +|[BIOMD0000000223](https://www.ebi.ac.uk/biomodels/BIOMD0000000223)
Borisov2009_EGF_Insulin_Crosstalk|
pass[BIOMD0000000223_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000223#Files)
|pass|
pass[BIOMD0000000223_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000223#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ddb7707aa641045eac1c/download

Logs: https://api.biosimulations.org/logs/6752ddb7707aa641045eac1c?includeOutput=true

View: https://api.biosimulations.org/runs/6752ddb7707aa641045eac1c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ddb49fa297efdca19e5d/download

Logs: https://api.biosimulations.org/logs/6752ddb49fa297efdca19e5d?includeOutput=true

View: https://api.biosimulations.org/runs/6752ddb49fa297efdca19e5d

HTTP response: 201
| +|[BIOMD0000000224](https://www.ebi.ac.uk/biomodels/BIOMD0000000224)
Meyer1991_CalciumSpike_ICC|
pass[BIOMD0000000224_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000224#Files)
|FAIL|
pass[BIOMD0000000224_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000224#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ddd49fa297efdca19e76/download

Logs: https://api.biosimulations.org/logs/6752ddd49fa297efdca19e76?includeOutput=true

View: https://api.biosimulations.org/runs/6752ddd49fa297efdca19e76

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ddd29fa297efdca19e73/download

Logs: https://api.biosimulations.org/logs/6752ddd29fa297efdca19e73?includeOutput=true

View: https://api.biosimulations.org/runs/6752ddd29fa297efdca19e73

HTTP response: 201
| +|
[BIOMD0000000225](https://www.ebi.ac.uk/biomodels/BIOMD0000000225)
Westermark2003_Pancreatic_GlycWestermark2003_Pancreatic_GlycOsc_basic
|
pass[BIOMD0000000225_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000225#Files)
|pass|
pass[BIOMD0000000225_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000225#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dde6707aa641045eac4b/download

Logs: https://api.biosimulations.org/logs/6752dde6707aa641045eac4b?includeOutput=true

View: https://api.biosimulations.org/runs/6752dde6707aa641045eac4b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dde4707aa641045eac3c/download

Logs: https://api.biosimulations.org/logs/6752dde4707aa641045eac3c?includeOutput=true

View: https://api.biosimulations.org/runs/6752dde4707aa641045eac3c

HTTP response: 201
| +|
[BIOMD0000000226](https://www.ebi.ac.uk/biomodels/BIOMD0000000226)
Radulescu2008_NFkB_hierarchy_MRadulescu2008_NFkB_hierarchy_M_14_25_28_Lipniacky
|
pass[BIOMD0000000226_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000226#Files)
|pass|
pass[BIOMD0000000226_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000226#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ddfb9fa297efdca19e9d/download

Logs: https://api.biosimulations.org/logs/6752ddfb9fa297efdca19e9d?includeOutput=true

View: https://api.biosimulations.org/runs/6752ddfb9fa297efdca19e9d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ddf9707aa641045eac5a/download

Logs: https://api.biosimulations.org/logs/6752ddf9707aa641045eac5a?includeOutput=true

View: https://api.biosimulations.org/runs/6752ddf9707aa641045eac5a

HTTP response: 201
| +|
[BIOMD0000000227](https://www.ebi.ac.uk/biomodels/BIOMD0000000227)
Radulescu2008_NFkB_hierarchy_MRadulescu2008_NFkB_hierarchy_M_39_65_90
|
pass[BIOMD0000000227_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000227#Files)
|pass|
pass[BIOMD0000000227_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000227#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752de10c3054f763d5505c0/download

Logs: https://api.biosimulations.org/logs/6752de10c3054f763d5505c0?includeOutput=true

View: https://api.biosimulations.org/runs/6752de10c3054f763d5505c0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752de0d707aa641045eac6a/download

Logs: https://api.biosimulations.org/logs/6752de0d707aa641045eac6a?includeOutput=true

View: https://api.biosimulations.org/runs/6752de0d707aa641045eac6a

HTTP response: 201
| +|[BIOMD0000000228](https://www.ebi.ac.uk/biomodels/BIOMD0000000228)
Swat2004_Mammalian_G1_S_Transition|
pass[BIOMD0000000228_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000228#Files)
|pass|
pass[BIOMD0000000228_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000228#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752de27707aa641045eac79/download

Logs: https://api.biosimulations.org/logs/6752de27707aa641045eac79?includeOutput=true

View: https://api.biosimulations.org/runs/6752de27707aa641045eac79

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752de259fa297efdca19ecb/download

Logs: https://api.biosimulations.org/logs/6752de259fa297efdca19ecb?includeOutput=true

View: https://api.biosimulations.org/runs/6752de259fa297efdca19ecb

HTTP response: 201
| +|[BIOMD0000000229](https://www.ebi.ac.uk/biomodels/BIOMD0000000229)
Ma2002_cAMP_oscillations|
pass[BIOMD0000000229_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000229#Files)
|pass|
pass[BIOMD0000000229_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000229#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752de3c707aa641045eac96/download

Logs: https://api.biosimulations.org/logs/6752de3c707aa641045eac96?includeOutput=true

View: https://api.biosimulations.org/runs/6752de3c707aa641045eac96

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752de3a9fa297efdca19edb/download

Logs: https://api.biosimulations.org/logs/6752de3a9fa297efdca19edb?includeOutput=true

View: https://api.biosimulations.org/runs/6752de3a9fa297efdca19edb

HTTP response: 201
| +|[BIOMD0000000230](https://www.ebi.ac.uk/biomodels/BIOMD0000000230)
Ihekwaba2004_NFkB_Sensitivity|
pass[BIOMD0000000230_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000230#Files)
|pass|
pass[BIOMD0000000230_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000230#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752de4fc3054f763d55060f/download

Logs: https://api.biosimulations.org/logs/6752de4fc3054f763d55060f?includeOutput=true

View: https://api.biosimulations.org/runs/6752de4fc3054f763d55060f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752de4d9fa297efdca19ee6/download

Logs: https://api.biosimulations.org/logs/6752de4d9fa297efdca19ee6?includeOutput=true

View: https://api.biosimulations.org/runs/6752de4d9fa297efdca19ee6

HTTP response: 201
| +|[BIOMD0000000231](https://www.ebi.ac.uk/biomodels/BIOMD0000000231)
Valero2006_Adenine_TernaryCycle|
pass[BIOMD0000000231_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000231#Files)
|pass|
pass[BIOMD0000000231_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000231#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752de66707aa641045eacce/download

Logs: https://api.biosimulations.org/logs/6752de66707aa641045eacce?includeOutput=true

View: https://api.biosimulations.org/runs/6752de66707aa641045eacce

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752de64707aa641045eaccb/download

Logs: https://api.biosimulations.org/logs/6752de64707aa641045eaccb?includeOutput=true

View: https://api.biosimulations.org/runs/6752de64707aa641045eaccb

HTTP response: 201
| +|[BIOMD0000000232](https://www.ebi.ac.uk/biomodels/BIOMD0000000232)
Nazaret2009_TCA_RC_ATP|
pass[BIOMD0000000232_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000232#Files)
|FAIL|
pass[BIOMD0000000232_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000232#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752de7bc3054f763d550630/download

Logs: https://api.biosimulations.org/logs/6752de7bc3054f763d550630?includeOutput=true

View: https://api.biosimulations.org/runs/6752de7bc3054f763d550630

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752de79707aa641045eacdc/download

Logs: https://api.biosimulations.org/logs/6752de79707aa641045eacdc?includeOutput=true

View: https://api.biosimulations.org/runs/6752de79707aa641045eacdc

HTTP response: 201
| +|[BIOMD0000000233](https://www.ebi.ac.uk/biomodels/BIOMD0000000233)
Wilhelm2009_BistableReaction|
pass[BIOMD0000000233_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000233#Files)
|pass|
pass[BIOMD0000000233_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000233#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752de8f9fa297efdca19f38/download

Logs: https://api.biosimulations.org/logs/6752de8f9fa297efdca19f38?includeOutput=true

View: https://api.biosimulations.org/runs/6752de8f9fa297efdca19f38

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752de8d9fa297efdca19f2c/download

Logs: https://api.biosimulations.org/logs/6752de8d9fa297efdca19f2c?includeOutput=true

View: https://api.biosimulations.org/runs/6752de8d9fa297efdca19f2c

HTTP response: 201
| +|
[BIOMD0000000234](https://www.ebi.ac.uk/biomodels/BIOMD0000000234)
Tham2008 - PDmodel, Tumour shrTham2008 - PDmodel, Tumour shrinkage by gemcitabine and carboplatin
|
pass[GemcitabineCorrected.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000234#Files)
|pass|
pass[GemcitabineCorrected.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000234#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6752dea29fa297efdca19f4b/download

Logs: https://api.biosimulations.org/logs/6752dea29fa297efdca19f4b?includeOutput=true

View: https://api.biosimulations.org/runs/6752dea29fa297efdca19f4b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dea0707aa641045eacf7/download

Logs: https://api.biosimulations.org/logs/6752dea0707aa641045eacf7?includeOutput=true

View: https://api.biosimulations.org/runs/6752dea0707aa641045eacf7

HTTP response: 201
| +|[BIOMD0000000235](https://www.ebi.ac.uk/biomodels/BIOMD0000000235)
Kuhn2009_EndoMesodermNetwork|
pass[BIOMD0000000235_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000235#Files)
|pass|
pass[BIOMD0000000235_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000235#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dec6c3054f763d55066d/download

Logs: https://api.biosimulations.org/logs/6752dec6c3054f763d55066d?includeOutput=true

View: https://api.biosimulations.org/runs/6752dec6c3054f763d55066d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dec3707aa641045ead23/download

Logs: https://api.biosimulations.org/logs/6752dec3707aa641045ead23?includeOutput=true

View: https://api.biosimulations.org/runs/6752dec3707aa641045ead23

HTTP response: 201
| +|
[BIOMD0000000236](https://www.ebi.ac.uk/biomodels/BIOMD0000000236)
Westermark2003_Pancreatic_GlycWestermark2003_Pancreatic_GlycOsc_extended
|
pass[BIOMD0000000236_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000236#Files)
|FAIL|
pass[BIOMD0000000236_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000236#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752df0d707aa641045ead50/download

Logs: https://api.biosimulations.org/logs/6752df0d707aa641045ead50?includeOutput=true

View: https://api.biosimulations.org/runs/6752df0d707aa641045ead50

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752df0ac3054f763d550690/download

Logs: https://api.biosimulations.org/logs/6752df0ac3054f763d550690?includeOutput=true

View: https://api.biosimulations.org/runs/6752df0ac3054f763d550690

HTTP response: 201
| +|
[BIOMD0000000237](https://www.ebi.ac.uk/biomodels/BIOMD0000000237)
Schaber2006_Pheromone_StarvatiSchaber2006_Pheromone_Starvation_Crosstalk
|
pass[BIOMD0000000237_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000237#Files)
|pass|
pass[BIOMD0000000237_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000237#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752df2d9fa297efdca19fb9/download

Logs: https://api.biosimulations.org/logs/6752df2d9fa297efdca19fb9?includeOutput=true

View: https://api.biosimulations.org/runs/6752df2d9fa297efdca19fb9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752df2a707aa641045ead5d/download

Logs: https://api.biosimulations.org/logs/6752df2a707aa641045ead5d?includeOutput=true

View: https://api.biosimulations.org/runs/6752df2a707aa641045ead5d

HTTP response: 201
| +|[BIOMD0000000238](https://www.ebi.ac.uk/biomodels/BIOMD0000000238)
Overgaard2007_PDmodel_IL21|
pass[BIOMD0000000238_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000238#Files)
|pass|
pass[BIOMD0000000238_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000238#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752df419fa297efdca19fd6/download

Logs: https://api.biosimulations.org/logs/6752df419fa297efdca19fd6?includeOutput=true

View: https://api.biosimulations.org/runs/6752df419fa297efdca19fd6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752df3f707aa641045ead76/download

Logs: https://api.biosimulations.org/logs/6752df3f707aa641045ead76?includeOutput=true

View: https://api.biosimulations.org/runs/6752df3f707aa641045ead76

HTTP response: 201
| +|
[BIOMD0000000239](https://www.ebi.ac.uk/biomodels/BIOMD0000000239)
Jiang2007 - GSIS system, PancrJiang2007 - GSIS system, Pancreatic Beta Cells
|
pass[BIOMD0000000239_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000239#Files)
|pass|
pass[BIOMD0000000239_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000239#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752df5a707aa641045ead90/download

Logs: https://api.biosimulations.org/logs/6752df5a707aa641045ead90?includeOutput=true

View: https://api.biosimulations.org/runs/6752df5a707aa641045ead90

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752df579fa297efdca19fe9/download

Logs: https://api.biosimulations.org/logs/6752df579fa297efdca19fe9?includeOutput=true

View: https://api.biosimulations.org/runs/6752df579fa297efdca19fe9

HTTP response: 201
| +|[BIOMD0000000240](https://www.ebi.ac.uk/biomodels/BIOMD0000000240)
Veening2008_DegU_Regulation|
pass[BIOMD0000000240_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000240#Files)
|pass|
pass[BIOMD0000000240_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000240#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752df74c3054f763d5506f9/download

Logs: https://api.biosimulations.org/logs/6752df74c3054f763d5506f9?includeOutput=true

View: https://api.biosimulations.org/runs/6752df74c3054f763d5506f9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752df709fa297efdca19ff2/download

Logs: https://api.biosimulations.org/logs/6752df709fa297efdca19ff2?includeOutput=true

View: https://api.biosimulations.org/runs/6752df709fa297efdca19ff2

HTTP response: 201
| +|[BIOMD0000000241](https://www.ebi.ac.uk/biomodels/BIOMD0000000241)
Shi1993_Caffeine_pressor_tolerance|
pass[BIOMD0000000241_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000241#Files)
|pass|
pass[BIOMD0000000241_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000241#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752df89707aa641045eadc6/download

Logs: https://api.biosimulations.org/logs/6752df89707aa641045eadc6?includeOutput=true

View: https://api.biosimulations.org/runs/6752df89707aa641045eadc6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752df86707aa641045eadc3/download

Logs: https://api.biosimulations.org/logs/6752df86707aa641045eadc3?includeOutput=true

View: https://api.biosimulations.org/runs/6752df86707aa641045eadc3

HTTP response: 201
| +|[BIOMD0000000242](https://www.ebi.ac.uk/biomodels/BIOMD0000000242)
Bai2003_G1phaseRegulation|
pass[BIOMD0000000242_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000242#Files)
|pass|
pass[BIOMD0000000242_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000242#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752df9f707aa641045eadd4/download

Logs: https://api.biosimulations.org/logs/6752df9f707aa641045eadd4?includeOutput=true

View: https://api.biosimulations.org/runs/6752df9f707aa641045eadd4

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752df9cc3054f763d550719/download

Logs: https://api.biosimulations.org/logs/6752df9cc3054f763d550719?includeOutput=true

View: https://api.biosimulations.org/runs/6752df9cc3054f763d550719

HTTP response: 201
| +|
[BIOMD0000000243](https://www.ebi.ac.uk/biomodels/BIOMD0000000243)
Neumann2010_CD95Stimulation_NFNeumann2010_CD95Stimulation_NFkB_Apoptosis
|
pass[BIOMD0000000243_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000243#Files)
|pass|
pass[BIOMD0000000243_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000243#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dfb2707aa641045eadea/download

Logs: https://api.biosimulations.org/logs/6752dfb2707aa641045eadea?includeOutput=true

View: https://api.biosimulations.org/runs/6752dfb2707aa641045eadea

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dfb0c3054f763d55072b/download

Logs: https://api.biosimulations.org/logs/6752dfb0c3054f763d55072b?includeOutput=true

View: https://api.biosimulations.org/runs/6752dfb0c3054f763d55072b

HTTP response: 201
| +|[BIOMD0000000244](https://www.ebi.ac.uk/biomodels/BIOMD0000000244)
Kotte2010_Ecoli_Metabolic_Adaption|
pass[BIOMD0000000244_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000244#Files)
|FAIL|
pass[BIOMD0000000244_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000244#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dfca707aa641045eae03/download

Logs: https://api.biosimulations.org/logs/6752dfca707aa641045eae03?includeOutput=true

View: https://api.biosimulations.org/runs/6752dfca707aa641045eae03

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dfc8707aa641045eadff/download

Logs: https://api.biosimulations.org/logs/6752dfc8707aa641045eadff?includeOutput=true

View: https://api.biosimulations.org/runs/6752dfc8707aa641045eadff

HTTP response: 201
| +|[BIOMD0000000245](https://www.ebi.ac.uk/biomodels/BIOMD0000000245)
Lei2001_Yeast_Aerobic_Metabolism|
pass[BIOMD0000000245_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000245#Files)
|FAIL|
pass[BIOMD0000000245_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000245#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752dfe79fa297efdca1a05f/download

Logs: https://api.biosimulations.org/logs/6752dfe79fa297efdca1a05f?includeOutput=true

View: https://api.biosimulations.org/runs/6752dfe79fa297efdca1a05f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dfe5707aa641045eae12/download

Logs: https://api.biosimulations.org/logs/6752dfe5707aa641045eae12?includeOutput=true

View: https://api.biosimulations.org/runs/6752dfe5707aa641045eae12

HTTP response: 201
| +|[BIOMD0000000246](https://www.ebi.ac.uk/biomodels/BIOMD0000000246)
Vasalou2010_Pacemaker_Neuron_SCN|
pass[BIOMD0000000246_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000246#Files)
|FAIL|
pass[BIOMD0000000246_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000246#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e002707aa641045eae28/download

Logs: https://api.biosimulations.org/logs/6752e002707aa641045eae28?includeOutput=true

View: https://api.biosimulations.org/runs/6752e002707aa641045eae28

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752dfff9fa297efdca1a077/download

Logs: https://api.biosimulations.org/logs/6752dfff9fa297efdca1a077?includeOutput=true

View: https://api.biosimulations.org/runs/6752dfff9fa297efdca1a077

HTTP response: 201
| +|
[BIOMD0000000247](https://www.ebi.ac.uk/biomodels/BIOMD0000000247)
Ralser2007_Carbohydrate_ReroutRalser2007_Carbohydrate_Rerouting_ROS
|
pass[BIOMD0000000247_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000247#Files)
|FAIL|
pass[BIOMD0000000247_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000247#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e021707aa641045eae43/download

Logs: https://api.biosimulations.org/logs/6752e021707aa641045eae43?includeOutput=true

View: https://api.biosimulations.org/runs/6752e021707aa641045eae43

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e01e9fa297efdca1a083/download

Logs: https://api.biosimulations.org/logs/6752e01e9fa297efdca1a083?includeOutput=true

View: https://api.biosimulations.org/runs/6752e01e9fa297efdca1a083

HTTP response: 201
| +|[BIOMD0000000248](https://www.ebi.ac.uk/biomodels/BIOMD0000000248)
Lai2007_O2_Transport_Metabolism|
pass[BIOMD0000000248_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000248#Files)
|FAIL|
pass[BIOMD0000000248_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000248#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e038c3054f763d5507a1/download

Logs: https://api.biosimulations.org/logs/6752e038c3054f763d5507a1?includeOutput=true

View: https://api.biosimulations.org/runs/6752e038c3054f763d5507a1

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e0369fa297efdca1a095/download

Logs: https://api.biosimulations.org/logs/6752e0369fa297efdca1a095?includeOutput=true

View: https://api.biosimulations.org/runs/6752e0369fa297efdca1a095

HTTP response: 201
| +|[BIOMD0000000249](https://www.ebi.ac.uk/biomodels/BIOMD0000000249)
Restif2006 - Whooping cough|
pass[BIOMD0000000249_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000249#Files)
|pass|
pass[BIOMD0000000249_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000249#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e04d707aa641045eae6c/download

Logs: https://api.biosimulations.org/logs/6752e04d707aa641045eae6c?includeOutput=true

View: https://api.biosimulations.org/runs/6752e04d707aa641045eae6c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e04b707aa641045eae67/download

Logs: https://api.biosimulations.org/logs/6752e04b707aa641045eae67?includeOutput=true

View: https://api.biosimulations.org/runs/6752e04b707aa641045eae67

HTTP response: 201
| +|
[BIOMD0000000250](https://www.ebi.ac.uk/biomodels/BIOMD0000000250)
Nakakuki2010_CellFateDecision_Nakakuki2010_CellFateDecision_Mechanistic
|
pass[BIOMD0000000250_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000250#Files)
|FAIL|
pass[BIOMD0000000250_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000250#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e063707aa641045eae79/download

Logs: https://api.biosimulations.org/logs/6752e063707aa641045eae79?includeOutput=true

View: https://api.biosimulations.org/runs/6752e063707aa641045eae79

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e0609fa297efdca1a0c2/download

Logs: https://api.biosimulations.org/logs/6752e0609fa297efdca1a0c2?includeOutput=true

View: https://api.biosimulations.org/runs/6752e0609fa297efdca1a0c2

HTTP response: 201
| +|[BIOMD0000000251](https://www.ebi.ac.uk/biomodels/BIOMD0000000251)
Nakakuki2010_CellFateDecision_Core|
pass[BIOMD0000000251_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000251#Files)
|FAIL|
pass[BIOMD0000000251_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000251#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e07ec3054f763d5507e0/download

Logs: https://api.biosimulations.org/logs/6752e07ec3054f763d5507e0?includeOutput=true

View: https://api.biosimulations.org/runs/6752e07ec3054f763d5507e0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e07bc3054f763d5507dd/download

Logs: https://api.biosimulations.org/logs/6752e07bc3054f763d5507dd?includeOutput=true

View: https://api.biosimulations.org/runs/6752e07bc3054f763d5507dd

HTTP response: 201
| +|
[BIOMD0000000252](https://www.ebi.ac.uk/biomodels/BIOMD0000000252)
Hunziker2010_p53_StressSpecifiHunziker2010_p53_StressSpecificResponse
|
pass[BIOMD0000000252_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000252#Files)
|pass|
pass[BIOMD0000000252_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000252#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e0919fa297efdca1a0f0/download

Logs: https://api.biosimulations.org/logs/6752e0919fa297efdca1a0f0?includeOutput=true

View: https://api.biosimulations.org/runs/6752e0919fa297efdca1a0f0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e08f9fa297efdca1a0e6/download

Logs: https://api.biosimulations.org/logs/6752e08f9fa297efdca1a0e6?includeOutput=true

View: https://api.biosimulations.org/runs/6752e08f9fa297efdca1a0e6

HTTP response: 201
| +|[BIOMD0000000253](https://www.ebi.ac.uk/biomodels/BIOMD0000000253)
Teusink1998_Glycolysis_TurboDesign|
pass[BIOMD0000000253_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000253#Files)
|FAIL|
pass[BIOMD0000000253_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000253#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e0a6c3054f763d550807/download

Logs: https://api.biosimulations.org/logs/6752e0a6c3054f763d550807?includeOutput=true

View: https://api.biosimulations.org/runs/6752e0a6c3054f763d550807

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e0a4707aa641045eaeaa/download

Logs: https://api.biosimulations.org/logs/6752e0a4707aa641045eaeaa?includeOutput=true

View: https://api.biosimulations.org/runs/6752e0a4707aa641045eaeaa

HTTP response: 201
| +|[BIOMD0000000254](https://www.ebi.ac.uk/biomodels/BIOMD0000000254)
Bier2000_GlycolyticOscillation|
pass[BIOMD0000000254_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000254#Files)
|pass|
pass[BIOMD0000000254_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000254#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e0b8707aa641045eaec3/download

Logs: https://api.biosimulations.org/logs/6752e0b8707aa641045eaec3?includeOutput=true

View: https://api.biosimulations.org/runs/6752e0b8707aa641045eaec3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e0b6707aa641045eaeb7/download

Logs: https://api.biosimulations.org/logs/6752e0b6707aa641045eaeb7?includeOutput=true

View: https://api.biosimulations.org/runs/6752e0b6707aa641045eaeb7

HTTP response: 201
| +|[BIOMD0000000255](https://www.ebi.ac.uk/biomodels/BIOMD0000000255)
Chen2009 - ErbB Signaling|
pass[BIOMD0000000255_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000255#Files)
|pass|
pass[BIOMD0000000255_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000255#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e0d69fa297efdca1a12d/download

Logs: https://api.biosimulations.org/logs/6752e0d69fa297efdca1a12d?includeOutput=true

View: https://api.biosimulations.org/runs/6752e0d69fa297efdca1a12d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e0d3707aa641045eaedb/download

Logs: https://api.biosimulations.org/logs/6752e0d3707aa641045eaedb?includeOutput=true

View: https://api.biosimulations.org/runs/6752e0d3707aa641045eaedb

HTTP response: 201
| +|[BIOMD0000000256](https://www.ebi.ac.uk/biomodels/BIOMD0000000256)
Rehm2006_Caspase|
pass[BIOMD0000000256_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000256#Files)
|pass|
pass[BIOMD0000000256_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000256#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e1129fa297efdca1a151/download

Logs: https://api.biosimulations.org/logs/6752e1129fa297efdca1a151?includeOutput=true

View: https://api.biosimulations.org/runs/6752e1129fa297efdca1a151

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e110c3054f763d55084f/download

Logs: https://api.biosimulations.org/logs/6752e110c3054f763d55084f?includeOutput=true

View: https://api.biosimulations.org/runs/6752e110c3054f763d55084f

HTTP response: 201
| +|[BIOMD0000000257](https://www.ebi.ac.uk/biomodels/BIOMD0000000257)
Piedrafita2010_MR_System|
pass[BIOMD0000000257_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000257#Files)
|pass|
pass[BIOMD0000000257_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000257#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e1279fa297efdca1a163/download

Logs: https://api.biosimulations.org/logs/6752e1279fa297efdca1a163?includeOutput=true

View: https://api.biosimulations.org/runs/6752e1279fa297efdca1a163

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e125707aa641045eaf32/download

Logs: https://api.biosimulations.org/logs/6752e125707aa641045eaf32?includeOutput=true

View: https://api.biosimulations.org/runs/6752e125707aa641045eaf32

HTTP response: 201
| +|
[BIOMD0000000258](https://www.ebi.ac.uk/biomodels/BIOMD0000000258)
Ortega2006 - bistability from Ortega2006 - bistability from double phosphorylation in signal transduction
|
pass[BIOMD0000000258_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000258#Files)
|pass|
pass[BIOMD0000000258_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000258#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e13ec3054f763d550872/download

Logs: https://api.biosimulations.org/logs/6752e13ec3054f763d550872?includeOutput=true

View: https://api.biosimulations.org/runs/6752e13ec3054f763d550872

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e13cc3054f763d55086c/download

Logs: https://api.biosimulations.org/logs/6752e13cc3054f763d55086c?includeOutput=true

View: https://api.biosimulations.org/runs/6752e13cc3054f763d55086c

HTTP response: 201
| +|[BIOMD0000000259](https://www.ebi.ac.uk/biomodels/BIOMD0000000259)
Tiago2010_FeMetabolism_FeDeficient|
pass[BIOMD0000000259_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000259#Files)
|pass|
pass[BIOMD0000000259_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000259#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e151c3054f763d550884/download

Logs: https://api.biosimulations.org/logs/6752e151c3054f763d550884?includeOutput=true

View: https://api.biosimulations.org/runs/6752e151c3054f763d550884

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e14e707aa641045eaf57/download

Logs: https://api.biosimulations.org/logs/6752e14e707aa641045eaf57?includeOutput=true

View: https://api.biosimulations.org/runs/6752e14e707aa641045eaf57

HTTP response: 201
| +|[BIOMD0000000260](https://www.ebi.ac.uk/biomodels/BIOMD0000000260)
Tiago2010_FeMetabolism_FeAdequate|
pass[BIOMD0000000260_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000260#Files)
|pass|
pass[BIOMD0000000260_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000260#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e165707aa641045eaf72/download

Logs: https://api.biosimulations.org/logs/6752e165707aa641045eaf72?includeOutput=true

View: https://api.biosimulations.org/runs/6752e165707aa641045eaf72

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e163c3054f763d550894/download

Logs: https://api.biosimulations.org/logs/6752e163c3054f763d550894?includeOutput=true

View: https://api.biosimulations.org/runs/6752e163c3054f763d550894

HTTP response: 201
| +|[BIOMD0000000261](https://www.ebi.ac.uk/biomodels/BIOMD0000000261)
Tiago2010_FeMetabolism_FeLoaded|
pass[BIOMD0000000261_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000261#Files)
|pass|
pass[BIOMD0000000261_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000261#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e17cc3054f763d5508b2/download

Logs: https://api.biosimulations.org/logs/6752e17cc3054f763d5508b2?includeOutput=true

View: https://api.biosimulations.org/runs/6752e17cc3054f763d5508b2

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e17a707aa641045eaf89/download

Logs: https://api.biosimulations.org/logs/6752e17a707aa641045eaf89?includeOutput=true

View: https://api.biosimulations.org/runs/6752e17a707aa641045eaf89

HTTP response: 201
| +|[BIOMD0000000262](https://www.ebi.ac.uk/biomodels/BIOMD0000000262)
Fujita2010_Akt_Signalling_EGF|
pass[BIOMD0000000262_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000262#Files)
|pass|
pass[BIOMD0000000262_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000262#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e1949fa297efdca1a1d4/download

Logs: https://api.biosimulations.org/logs/6752e1949fa297efdca1a1d4?includeOutput=true

View: https://api.biosimulations.org/runs/6752e1949fa297efdca1a1d4

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e1919fa297efdca1a1d0/download

Logs: https://api.biosimulations.org/logs/6752e1919fa297efdca1a1d0?includeOutput=true

View: https://api.biosimulations.org/runs/6752e1919fa297efdca1a1d0

HTTP response: 201
| +|[BIOMD0000000263](https://www.ebi.ac.uk/biomodels/BIOMD0000000263)
Fujita2010_Akt_Signalling_NGF|
pass[BIOMD0000000263_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000263#Files)
|pass|
pass[BIOMD0000000263_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000263#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e1a7c3054f763d5508dd/download

Logs: https://api.biosimulations.org/logs/6752e1a7c3054f763d5508dd?includeOutput=true

View: https://api.biosimulations.org/runs/6752e1a7c3054f763d5508dd

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e1a59fa297efdca1a1e3/download

Logs: https://api.biosimulations.org/logs/6752e1a59fa297efdca1a1e3?includeOutput=true

View: https://api.biosimulations.org/runs/6752e1a59fa297efdca1a1e3

HTTP response: 201
| +|[BIOMD0000000264](https://www.ebi.ac.uk/biomodels/BIOMD0000000264)
Fujita2010_Akt_Signalling_EGFRinhib|
pass[BIOMD0000000264_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000264#Files)
|pass|
pass[BIOMD0000000264_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000264#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e1ba707aa641045eafbf/download

Logs: https://api.biosimulations.org/logs/6752e1ba707aa641045eafbf?includeOutput=true

View: https://api.biosimulations.org/runs/6752e1ba707aa641045eafbf

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e1b8707aa641045eafb8/download

Logs: https://api.biosimulations.org/logs/6752e1b8707aa641045eafb8?includeOutput=true

View: https://api.biosimulations.org/runs/6752e1b8707aa641045eafb8

HTTP response: 201
| +|[BIOMD0000000265](https://www.ebi.ac.uk/biomodels/BIOMD0000000265)
Conradie2010_RPControl_CellCycle|
pass[BIOMD0000000265_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000265#Files)
|FAIL|
pass[BIOMD0000000265_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000265#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e1ce9fa297efdca1a218/download

Logs: https://api.biosimulations.org/logs/6752e1ce9fa297efdca1a218?includeOutput=true

View: https://api.biosimulations.org/runs/6752e1ce9fa297efdca1a218

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e1cb9fa297efdca1a209/download

Logs: https://api.biosimulations.org/logs/6752e1cb9fa297efdca1a209?includeOutput=true

View: https://api.biosimulations.org/runs/6752e1cb9fa297efdca1a209

HTTP response: 201
| +|[BIOMD0000000266](https://www.ebi.ac.uk/biomodels/BIOMD0000000266)
Voit2003 - Trehalose Cycle|
pass[BIOMD0000000266_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000266#Files)
|FAIL|
pass[BIOMD0000000266_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000266#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e1e5c3054f763d55090e/download

Logs: https://api.biosimulations.org/logs/6752e1e5c3054f763d55090e?includeOutput=true

View: https://api.biosimulations.org/runs/6752e1e5c3054f763d55090e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e1e3c3054f763d550906/download

Logs: https://api.biosimulations.org/logs/6752e1e3c3054f763d550906?includeOutput=true

View: https://api.biosimulations.org/runs/6752e1e3c3054f763d550906

HTTP response: 201
| +|
[BIOMD0000000267](https://www.ebi.ac.uk/biomodels/BIOMD0000000267)
Lebeda2008 - BoNT paralysis (3Lebeda2008 - BoNT paralysis (3 step model)
|
pass[BIOMD0000000267_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000267#Files)
|pass|
pass[BIOMD0000000267_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000267#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e1fb9fa297efdca1a243/download

Logs: https://api.biosimulations.org/logs/6752e1fb9fa297efdca1a243?includeOutput=true

View: https://api.biosimulations.org/runs/6752e1fb9fa297efdca1a243

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e1f9c3054f763d55091e/download

Logs: https://api.biosimulations.org/logs/6752e1f9c3054f763d55091e?includeOutput=true

View: https://api.biosimulations.org/runs/6752e1f9c3054f763d55091e

HTTP response: 201
| +|[BIOMD0000000268](https://www.ebi.ac.uk/biomodels/BIOMD0000000268)
Reed2008_Glutathione_Metabolism|
pass[BIOMD0000000268_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000268#Files)
|FAIL|
pass[BIOMD0000000268_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000268#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e20e707aa641045eb01d/download

Logs: https://api.biosimulations.org/logs/6752e20e707aa641045eb01d?includeOutput=true

View: https://api.biosimulations.org/runs/6752e20e707aa641045eb01d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e20c707aa641045eb011/download

Logs: https://api.biosimulations.org/logs/6752e20c707aa641045eb011?includeOutput=true

View: https://api.biosimulations.org/runs/6752e20c707aa641045eb011

HTTP response: 201
| +|
[BIOMD0000000269](https://www.ebi.ac.uk/biomodels/BIOMD0000000269)
Liu2010_Hormonal_Crosstalk_AraLiu2010_Hormonal_Crosstalk_Arabidopsis
|
pass[BIOMD0000000269_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000269#Files)
|pass|
pass[BIOMD0000000269_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000269#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e229c3054f763d550949/download

Logs: https://api.biosimulations.org/logs/6752e229c3054f763d550949?includeOutput=true

View: https://api.biosimulations.org/runs/6752e229c3054f763d550949

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e2279fa297efdca1a273/download

Logs: https://api.biosimulations.org/logs/6752e2279fa297efdca1a273?includeOutput=true

View: https://api.biosimulations.org/runs/6752e2279fa297efdca1a273

HTTP response: 201
| +|[BIOMD0000000270](https://www.ebi.ac.uk/biomodels/BIOMD0000000270)
Schilling2009 - ERK distributive|
pass[BIOMD0000000270_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000270#Files)
|pass|
pass[BIOMD0000000270_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000270#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e240707aa641045eb055/download

Logs: https://api.biosimulations.org/logs/6752e240707aa641045eb055?includeOutput=true

View: https://api.biosimulations.org/runs/6752e240707aa641045eb055

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e23dc3054f763d55095b/download

Logs: https://api.biosimulations.org/logs/6752e23dc3054f763d55095b?includeOutput=true

View: https://api.biosimulations.org/runs/6752e23dc3054f763d55095b

HTTP response: 201
| +|[BIOMD0000000271](https://www.ebi.ac.uk/biomodels/BIOMD0000000271)
Becker2010_EpoR_CoreModel|
pass[BIOMD0000000271_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000271#Files)
|pass|
pass[BIOMD0000000271_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000271#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e2579fa297efdca1a295/download

Logs: https://api.biosimulations.org/logs/6752e2579fa297efdca1a295?includeOutput=true

View: https://api.biosimulations.org/runs/6752e2579fa297efdca1a295

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e255707aa641045eb066/download

Logs: https://api.biosimulations.org/logs/6752e255707aa641045eb066?includeOutput=true

View: https://api.biosimulations.org/runs/6752e255707aa641045eb066

HTTP response: 201
| +|[BIOMD0000000272](https://www.ebi.ac.uk/biomodels/BIOMD0000000272)
Becker2010_EpoR_AuxiliaryModel|
pass[BIOMD0000000272_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000272#Files)
|pass|
pass[BIOMD0000000272_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000272#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e26d707aa641045eb07a/download

Logs: https://api.biosimulations.org/logs/6752e26d707aa641045eb07a?includeOutput=true

View: https://api.biosimulations.org/runs/6752e26d707aa641045eb07a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e26a9fa297efdca1a2ae/download

Logs: https://api.biosimulations.org/logs/6752e26a9fa297efdca1a2ae?includeOutput=true

View: https://api.biosimulations.org/runs/6752e26a9fa297efdca1a2ae

HTTP response: 201
| +|[BIOMD0000000273](https://www.ebi.ac.uk/biomodels/BIOMD0000000273)
Pokhilko2010_CircClock|
pass[BIOMD0000000273_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000273#Files)
|FAIL|
pass[BIOMD0000000273_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000273#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e2819fa297efdca1a2c8/download

Logs: https://api.biosimulations.org/logs/6752e2819fa297efdca1a2c8?includeOutput=true

View: https://api.biosimulations.org/runs/6752e2819fa297efdca1a2c8

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e27ec3054f763d550997/download

Logs: https://api.biosimulations.org/logs/6752e27ec3054f763d550997?includeOutput=true

View: https://api.biosimulations.org/runs/6752e27ec3054f763d550997

HTTP response: 201
| +|[BIOMD0000000274](https://www.ebi.ac.uk/biomodels/BIOMD0000000274)
Rattanakul2003_BoneFormationModel|
pass[BIOMD0000000274_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000274#Files)
|pass|
pass[BIOMD0000000274_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000274#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e2979fa297efdca1a2d5/download

Logs: https://api.biosimulations.org/logs/6752e2979fa297efdca1a2d5?includeOutput=true

View: https://api.biosimulations.org/runs/6752e2979fa297efdca1a2d5

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e295707aa641045eb09a/download

Logs: https://api.biosimulations.org/logs/6752e295707aa641045eb09a?includeOutput=true

View: https://api.biosimulations.org/runs/6752e295707aa641045eb09a

HTTP response: 201
| +|[BIOMD0000000275](https://www.ebi.ac.uk/biomodels/BIOMD0000000275)
Goldbeter2007_Somitogenesis_Switch|
pass[BIOMD0000000275_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000275#Files)
|pass|
pass[BIOMD0000000275_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000275#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e2a9c3054f763d5509c5/download

Logs: https://api.biosimulations.org/logs/6752e2a9c3054f763d5509c5?includeOutput=true

View: https://api.biosimulations.org/runs/6752e2a9c3054f763d5509c5

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e2a7c3054f763d5509bd/download

Logs: https://api.biosimulations.org/logs/6752e2a7c3054f763d5509bd?includeOutput=true

View: https://api.biosimulations.org/runs/6752e2a7c3054f763d5509bd

HTTP response: 201
| +|
[BIOMD0000000276](https://www.ebi.ac.uk/biomodels/BIOMD0000000276)
Shrestha2010_HypoCalcemia_PTHrShrestha2010_HypoCalcemia_PTHresponse
|
pass[BIOMD0000000276_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000276#Files)
|pass|
pass[BIOMD0000000276_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000276#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e2bfc3054f763d5509df/download

Logs: https://api.biosimulations.org/logs/6752e2bfc3054f763d5509df?includeOutput=true

View: https://api.biosimulations.org/runs/6752e2bfc3054f763d5509df

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e2bd707aa641045eb0cc/download

Logs: https://api.biosimulations.org/logs/6752e2bd707aa641045eb0cc?includeOutput=true

View: https://api.biosimulations.org/runs/6752e2bd707aa641045eb0cc

HTTP response: 201
| +|
[BIOMD0000000277](https://www.ebi.ac.uk/biomodels/BIOMD0000000277)
Shrestha2010_HyperCalcemia_PTHShrestha2010_HyperCalcemia_PTHresponse
|
pass[BIOMD0000000277_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000277#Files)
|pass|
pass[BIOMD0000000277_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000277#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e2d49fa297efdca1a310/download

Logs: https://api.biosimulations.org/logs/6752e2d49fa297efdca1a310?includeOutput=true

View: https://api.biosimulations.org/runs/6752e2d49fa297efdca1a310

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e2d19fa297efdca1a307/download

Logs: https://api.biosimulations.org/logs/6752e2d19fa297efdca1a307?includeOutput=true

View: https://api.biosimulations.org/runs/6752e2d19fa297efdca1a307

HTTP response: 201
| +|
[BIOMD0000000278](https://www.ebi.ac.uk/biomodels/BIOMD0000000278)
Lemaire2004 - Role of RANK/RANLemaire2004 - Role of RANK/RANKL/OPG pathway in bone remodelling process
|
pass[BIOMD0000000278_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000278#Files)
|pass|
MultipleSEDMLs['lemaire04_addB.sedml', 'lemaire04_addC.sedml', 'lemaire04_addOPG.sedml', 'lemaire04_addOPG_addRANKL.sedml', 'lemaire04_addPTH.sedml', 'lemaire04_addR.sedml', 'lemaire04_removeB.sedml', 'lemaire04_removeC.sedml', 'lemaire04_removeR.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000279](https://www.ebi.ac.uk/biomodels/BIOMD0000000279)
Komarova2005_PTHaction_OsteoclKomarova2005_PTHaction_OsteoclastOsteoblastCoupling
|
pass[BIOMD0000000279_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000279#Files)
|FAIL|
MultipleSEDMLs['figA_blue.sedml', 'figA_green.sedml', 'figA_red.sedml', 'figB1_blue.sedml', 'figB1_green.sedml', 'figB1_red.sedml', 'figB2_blue.sedml', 'figB2_green.sedml', 'figB2_red.sedml', 'figB3_blue.sedml', 'figB3_green.sedml', 'figB3_red.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000280](https://www.ebi.ac.uk/biomodels/BIOMD0000000280)
Morris1981_MuscleFibre_VoltageMorris1981_MuscleFibre_Voltage_reduced
|
pass[BIOMD0000000280_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000280#Files)
|pass|
pass[BIOMD0000000280_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000280#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e2e9c3054f763d550a0a/download

Logs: https://api.biosimulations.org/logs/6752e2e9c3054f763d550a0a?includeOutput=true

View: https://api.biosimulations.org/runs/6752e2e9c3054f763d550a0a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e2e7c3054f763d550a05/download

Logs: https://api.biosimulations.org/logs/6752e2e7c3054f763d550a05?includeOutput=true

View: https://api.biosimulations.org/runs/6752e2e7c3054f763d550a05

HTTP response: 201
| +|[BIOMD0000000284](https://www.ebi.ac.uk/biomodels/BIOMD0000000284)
Hofmeyer1986_SeqFb_Proc_AA_Synthesis|
pass[BIOMD0000000284_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000284#Files)
|pass|
pass[BIOMD0000000284_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000284#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e2fd707aa641045eb110/download

Logs: https://api.biosimulations.org/logs/6752e2fd707aa641045eb110?includeOutput=true

View: https://api.biosimulations.org/runs/6752e2fd707aa641045eb110

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e2fb9fa297efdca1a362/download

Logs: https://api.biosimulations.org/logs/6752e2fb9fa297efdca1a362?includeOutput=true

View: https://api.biosimulations.org/runs/6752e2fb9fa297efdca1a362

HTTP response: 201
| +|[BIOMD0000000285](https://www.ebi.ac.uk/biomodels/BIOMD0000000285)
Tang2010_PolyGlutamate|
pass[BIOMD0000000285_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000285#Files)
|pass|
pass[BIOMD0000000285_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000285#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e311c3054f763d550a3b/download

Logs: https://api.biosimulations.org/logs/6752e311c3054f763d550a3b?includeOutput=true

View: https://api.biosimulations.org/runs/6752e311c3054f763d550a3b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e30e707aa641045eb126/download

Logs: https://api.biosimulations.org/logs/6752e30e707aa641045eb126?includeOutput=true

View: https://api.biosimulations.org/runs/6752e30e707aa641045eb126

HTTP response: 201
| +|
[BIOMD0000000286](https://www.ebi.ac.uk/biomodels/BIOMD0000000286)
Proctor2010 - a link between GProctor2010 - a link between GSK3 and p53 in Alzheimer's Disease
|
pass[BIOMD0000000286_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000286#Files)
|pass|
pass[BIOMD0000000286_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000286#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e326707aa641045eb13e/download

Logs: https://api.biosimulations.org/logs/6752e326707aa641045eb13e?includeOutput=true

View: https://api.biosimulations.org/runs/6752e326707aa641045eb13e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e323c3054f763d550a47/download

Logs: https://api.biosimulations.org/logs/6752e323c3054f763d550a47?includeOutput=true

View: https://api.biosimulations.org/runs/6752e323c3054f763d550a47

HTTP response: 201
| +|
[BIOMD0000000287](https://www.ebi.ac.uk/biomodels/BIOMD0000000287)
Passos2010_DNAdamage_CellularSPassos2010_DNAdamage_CellularSenescence
|
pass[BIOMD0000000287_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000287#Files)
|pass|
pass[BIOMD0000000287_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000287#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e340c3054f763d550a57/download

Logs: https://api.biosimulations.org/logs/6752e340c3054f763d550a57?includeOutput=true

View: https://api.biosimulations.org/runs/6752e340c3054f763d550a57

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e33e707aa641045eb14e/download

Logs: https://api.biosimulations.org/logs/6752e33e707aa641045eb14e?includeOutput=true

View: https://api.biosimulations.org/runs/6752e33e707aa641045eb14e

HTTP response: 201
| +|[BIOMD0000000288](https://www.ebi.ac.uk/biomodels/BIOMD0000000288)
Wang2009 - PI3K Ras Crosstalk|
pass[BIOMD0000000288_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000288#Files)
|FAIL|
pass[BIOMD0000000288_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000288#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e354c3054f763d550a71/download

Logs: https://api.biosimulations.org/logs/6752e354c3054f763d550a71?includeOutput=true

View: https://api.biosimulations.org/runs/6752e354c3054f763d550a71

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e352c3054f763d550a65/download

Logs: https://api.biosimulations.org/logs/6752e352c3054f763d550a65?includeOutput=true

View: https://api.biosimulations.org/runs/6752e352c3054f763d550a65

HTTP response: 201
| +|[BIOMD0000000289](https://www.ebi.ac.uk/biomodels/BIOMD0000000289)
Alexander2010_Tcell_Regulation_Sys1|
pass[BIOMD0000000289_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000289#Files)
|pass|
pass[BIOMD0000000289_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000289#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e369707aa641045eb17a/download

Logs: https://api.biosimulations.org/logs/6752e369707aa641045eb17a?includeOutput=true

View: https://api.biosimulations.org/runs/6752e369707aa641045eb17a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e367c3054f763d550a82/download

Logs: https://api.biosimulations.org/logs/6752e367c3054f763d550a82?includeOutput=true

View: https://api.biosimulations.org/runs/6752e367c3054f763d550a82

HTTP response: 201
| +|[BIOMD0000000290](https://www.ebi.ac.uk/biomodels/BIOMD0000000290)
Alexander2010_Tcell_Regulation_Sys2|
pass[BIOMD0000000290_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000290#Files)
|pass|
pass[BIOMD0000000290_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000290#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e37b9fa297efdca1a3ee/download

Logs: https://api.biosimulations.org/logs/6752e37b9fa297efdca1a3ee?includeOutput=true

View: https://api.biosimulations.org/runs/6752e37b9fa297efdca1a3ee

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e3799fa297efdca1a3e9/download

Logs: https://api.biosimulations.org/logs/6752e3799fa297efdca1a3e9?includeOutput=true

View: https://api.biosimulations.org/runs/6752e3799fa297efdca1a3e9

HTTP response: 201
| +|
[BIOMD0000000291](https://www.ebi.ac.uk/biomodels/BIOMD0000000291)
Nikolaev2005_AlbuminBilirubinANikolaev2005_AlbuminBilirubinAdsorption
|
pass[BIOMD0000000291_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000291#Files)
|FAIL|
pass[BIOMD0000000291_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000291#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e38d707aa641045eb1b1/download

Logs: https://api.biosimulations.org/logs/6752e38d707aa641045eb1b1?includeOutput=true

View: https://api.biosimulations.org/runs/6752e38d707aa641045eb1b1

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e38b707aa641045eb1a6/download

Logs: https://api.biosimulations.org/logs/6752e38b707aa641045eb1a6?includeOutput=true

View: https://api.biosimulations.org/runs/6752e38b707aa641045eb1a6

HTTP response: 201
| +|
[BIOMD0000000292](https://www.ebi.ac.uk/biomodels/BIOMD0000000292)
Rovers1995_Photsynthetic_OscilRovers1995_Photsynthetic_Oscillations
|
pass[BIOMD0000000292_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000292#Files)
|pass|
pass[BIOMD0000000292_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000292#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e3a39fa297efdca1a418/download

Logs: https://api.biosimulations.org/logs/6752e3a39fa297efdca1a418?includeOutput=true

View: https://api.biosimulations.org/runs/6752e3a39fa297efdca1a418

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e3a1707aa641045eb1c1/download

Logs: https://api.biosimulations.org/logs/6752e3a1707aa641045eb1c1?includeOutput=true

View: https://api.biosimulations.org/runs/6752e3a1707aa641045eb1c1

HTTP response: 201
| +|
[BIOMD0000000293](https://www.ebi.ac.uk/biomodels/BIOMD0000000293)
Proctor2010 - UCHL1 Protein AgProctor2010 - UCHL1 Protein Aggregation
|
pass[BIOMD0000000293_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000293#Files)
|pass|
pass[BIOMD0000000293_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000293#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e3bbc3054f763d550ae2/download

Logs: https://api.biosimulations.org/logs/6752e3bbc3054f763d550ae2?includeOutput=true

View: https://api.biosimulations.org/runs/6752e3bbc3054f763d550ae2

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e3b8c3054f763d550add/download

Logs: https://api.biosimulations.org/logs/6752e3b8c3054f763d550add?includeOutput=true

View: https://api.biosimulations.org/runs/6752e3b8c3054f763d550add

HTTP response: 201
| +|[BIOMD0000000294](https://www.ebi.ac.uk/biomodels/BIOMD0000000294)
Restif2007 - Vaccination invasion|
pass[BIOMD0000000294_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000294#Files)
|pass|
pass[BIOMD0000000294_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000294#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e3ea9fa297efdca1a448/download

Logs: https://api.biosimulations.org/logs/6752e3ea9fa297efdca1a448?includeOutput=true

View: https://api.biosimulations.org/runs/6752e3ea9fa297efdca1a448

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e3e8c3054f763d550afc/download

Logs: https://api.biosimulations.org/logs/6752e3e8c3054f763d550afc?includeOutput=true

View: https://api.biosimulations.org/runs/6752e3e8c3054f763d550afc

HTTP response: 201
| +|[BIOMD0000000295](https://www.ebi.ac.uk/biomodels/BIOMD0000000295)
Akman2008_Circadian_Clock_Model1|
pass[BIOMD0000000295_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000295#Files)
|FAIL|
pass[BIOMD0000000295_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000295#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e3fe707aa641045eb216/download

Logs: https://api.biosimulations.org/logs/6752e3fe707aa641045eb216?includeOutput=true

View: https://api.biosimulations.org/runs/6752e3fe707aa641045eb216

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e3fc707aa641045eb1fe/download

Logs: https://api.biosimulations.org/logs/6752e3fc707aa641045eb1fe?includeOutput=true

View: https://api.biosimulations.org/runs/6752e3fc707aa641045eb1fe

HTTP response: 201
| +|[BIOMD0000000296](https://www.ebi.ac.uk/biomodels/BIOMD0000000296)
Balagaddé2008_E_coli_Predator_Prey|
pass[BIOMD0000000296_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000296#Files)
|pass|
pass[BIOMD0000000296_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000296#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e413c3054f763d550b14/download

Logs: https://api.biosimulations.org/logs/6752e413c3054f763d550b14?includeOutput=true

View: https://api.biosimulations.org/runs/6752e413c3054f763d550b14

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e4119fa297efdca1a477/download

Logs: https://api.biosimulations.org/logs/6752e4119fa297efdca1a477?includeOutput=true

View: https://api.biosimulations.org/runs/6752e4119fa297efdca1a477

HTTP response: 201
| +|
[BIOMD0000000297](https://www.ebi.ac.uk/biomodels/BIOMD0000000297)
Ciliberto2003_Morphogenesis_ChCiliberto2003_Morphogenesis_Checkpoint
|
pass[BIOMD0000000297_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000297#Files)
|pass|
pass[f3.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000297#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e425707aa641045eb240/download

Logs: https://api.biosimulations.org/logs/6752e425707aa641045eb240?includeOutput=true

View: https://api.biosimulations.org/runs/6752e425707aa641045eb240

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e423c3054f763d550b24/download

Logs: https://api.biosimulations.org/logs/6752e423c3054f763d550b24?includeOutput=true

View: https://api.biosimulations.org/runs/6752e423c3054f763d550b24

HTTP response: 201
| +|
[BIOMD0000000298](https://www.ebi.ac.uk/biomodels/BIOMD0000000298)
Leloup1999_CircadianRhythms_DrLeloup1999_CircadianRhythms_Drosophila
|
pass[BIOMD0000000298_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000298#Files)
|pass|
pass[BIOMD0000000298_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000298#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e43fc3054f763d550b45/download

Logs: https://api.biosimulations.org/logs/6752e43fc3054f763d550b45?includeOutput=true

View: https://api.biosimulations.org/runs/6752e43fc3054f763d550b45

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e43c707aa641045eb252/download

Logs: https://api.biosimulations.org/logs/6752e43c707aa641045eb252?includeOutput=true

View: https://api.biosimulations.org/runs/6752e43c707aa641045eb252

HTTP response: 201
| +|
[BIOMD0000000299](https://www.ebi.ac.uk/biomodels/BIOMD0000000299)
Leloup1999_CircadianRhythms_NeLeloup1999_CircadianRhythms_Neurospora
|
pass[BIOMD0000000299_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000299#Files)
|pass|
pass[BIOMD0000000299_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000299#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e454707aa641045eb268/download

Logs: https://api.biosimulations.org/logs/6752e454707aa641045eb268?includeOutput=true

View: https://api.biosimulations.org/runs/6752e454707aa641045eb268

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e451c3054f763d550b5c/download

Logs: https://api.biosimulations.org/logs/6752e451c3054f763d550b5c?includeOutput=true

View: https://api.biosimulations.org/runs/6752e451c3054f763d550b5c

HTTP response: 201
| +|[BIOMD0000000300](https://www.ebi.ac.uk/biomodels/BIOMD0000000300)
Schmierer2010_FIH_Ankyrins|
pass[BIOMD0000000300_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000300#Files)
|pass|
pass[BIOMD0000000300_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000300#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e468707aa641045eb27a/download

Logs: https://api.biosimulations.org/logs/6752e468707aa641045eb27a?includeOutput=true

View: https://api.biosimulations.org/runs/6752e468707aa641045eb27a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e4659fa297efdca1a4b7/download

Logs: https://api.biosimulations.org/logs/6752e4659fa297efdca1a4b7?includeOutput=true

View: https://api.biosimulations.org/runs/6752e4659fa297efdca1a4b7

HTTP response: 201
| +|[BIOMD0000000301](https://www.ebi.ac.uk/biomodels/BIOMD0000000301)
Friedland2009_Ara_RTC3_counter|
pass[BIOMD0000000301_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000301#Files)
|FAIL|
pass[BIOMD0000000301_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000301#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e47f707aa641045eb28e/download

Logs: https://api.biosimulations.org/logs/6752e47f707aa641045eb28e?includeOutput=true

View: https://api.biosimulations.org/runs/6752e47f707aa641045eb28e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e47c9fa297efdca1a4cb/download

Logs: https://api.biosimulations.org/logs/6752e47c9fa297efdca1a4cb?includeOutput=true

View: https://api.biosimulations.org/runs/6752e47c9fa297efdca1a4cb

HTTP response: 201
| +|
[BIOMD0000000302](https://www.ebi.ac.uk/biomodels/BIOMD0000000302)
Wang1996_Synaptic_Inhibition_TWang1996_Synaptic_Inhibition_Two_Neuron
|
pass[BIOMD0000000302_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000302#Files)
|pass|
pass[BIOMD0000000302_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000302#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e49ac3054f763d550bad/download

Logs: https://api.biosimulations.org/logs/6752e49ac3054f763d550bad?includeOutput=true

View: https://api.biosimulations.org/runs/6752e49ac3054f763d550bad

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e498c3054f763d550baa/download

Logs: https://api.biosimulations.org/logs/6752e498c3054f763d550baa?includeOutput=true

View: https://api.biosimulations.org/runs/6752e498c3054f763d550baa

HTTP response: 201
| +|[BIOMD0000000303](https://www.ebi.ac.uk/biomodels/BIOMD0000000303)
Liu2011_Complement_System|
pass[BIOMD0000000303_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000303#Files)
|pass|
pass[BIOMD0000000303_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000303#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e4b2c3054f763d550bbc/download

Logs: https://api.biosimulations.org/logs/6752e4b2c3054f763d550bbc?includeOutput=true

View: https://api.biosimulations.org/runs/6752e4b2c3054f763d550bbc

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e4af9fa297efdca1a4ea/download

Logs: https://api.biosimulations.org/logs/6752e4af9fa297efdca1a4ea?includeOutput=true

View: https://api.biosimulations.org/runs/6752e4af9fa297efdca1a4ea

HTTP response: 201
| +|[BIOMD0000000304](https://www.ebi.ac.uk/biomodels/BIOMD0000000304)
Plant1981_BurstingNerveCells|
pass[BIOMD0000000304_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000304#Files)
|pass|
pass[BIOMD0000000304_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000304#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e4cb707aa641045eb2ef/download

Logs: https://api.biosimulations.org/logs/6752e4cb707aa641045eb2ef?includeOutput=true

View: https://api.biosimulations.org/runs/6752e4cb707aa641045eb2ef

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e4c8707aa641045eb2e6/download

Logs: https://api.biosimulations.org/logs/6752e4c8707aa641045eb2e6?includeOutput=true

View: https://api.biosimulations.org/runs/6752e4c8707aa641045eb2e6

HTTP response: 201
| +|[BIOMD0000000305](https://www.ebi.ac.uk/biomodels/BIOMD0000000305)
Kolomeisky2003_MyosinV_Processivity|
pass[BIOMD0000000305_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000305#Files)
|pass|
pass[BIOMD0000000305_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000305#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e4e0707aa641045eb30a/download

Logs: https://api.biosimulations.org/logs/6752e4e0707aa641045eb30a?includeOutput=true

View: https://api.biosimulations.org/runs/6752e4e0707aa641045eb30a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e4de9fa297efdca1a515/download

Logs: https://api.biosimulations.org/logs/6752e4de9fa297efdca1a515?includeOutput=true

View: https://api.biosimulations.org/runs/6752e4de9fa297efdca1a515

HTTP response: 201
| +|[BIOMD0000000306](https://www.ebi.ac.uk/biomodels/BIOMD0000000306)
Tyson2003_Activator_Inhibitor|
pass[BIOMD0000000306_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000306#Files)
|pass|
pass[BIOMD0000000306_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000306#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e4f3c3054f763d550c15/download

Logs: https://api.biosimulations.org/logs/6752e4f3c3054f763d550c15?includeOutput=true

View: https://api.biosimulations.org/runs/6752e4f3c3054f763d550c15

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e4f1c3054f763d550c0a/download

Logs: https://api.biosimulations.org/logs/6752e4f1c3054f763d550c0a?includeOutput=true

View: https://api.biosimulations.org/runs/6752e4f1c3054f763d550c0a

HTTP response: 201
| +|[BIOMD0000000307](https://www.ebi.ac.uk/biomodels/BIOMD0000000307)
Tyson2003_Substrate_Depletion_Osc|
pass[BIOMD0000000307_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000307#Files)
|pass|
pass[BIOMD0000000307_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000307#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e505707aa641045eb329/download

Logs: https://api.biosimulations.org/logs/6752e505707aa641045eb329?includeOutput=true

View: https://api.biosimulations.org/runs/6752e505707aa641045eb329

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e5029fa297efdca1a533/download

Logs: https://api.biosimulations.org/logs/6752e5029fa297efdca1a533?includeOutput=true

View: https://api.biosimulations.org/runs/6752e5029fa297efdca1a533

HTTP response: 201
| +|[BIOMD0000000308](https://www.ebi.ac.uk/biomodels/BIOMD0000000308)
Tyson2003_NegFB_Oscillator|
pass[BIOMD0000000308_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000308#Files)
|pass|
pass[BIOMD0000000308_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000308#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e519c3054f763d550c4c/download

Logs: https://api.biosimulations.org/logs/6752e519c3054f763d550c4c?includeOutput=true

View: https://api.biosimulations.org/runs/6752e519c3054f763d550c4c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e517c3054f763d550c49/download

Logs: https://api.biosimulations.org/logs/6752e517c3054f763d550c49?includeOutput=true

View: https://api.biosimulations.org/runs/6752e517c3054f763d550c49

HTTP response: 201
| +|[BIOMD0000000309](https://www.ebi.ac.uk/biomodels/BIOMD0000000309)
Tyson2003_NegFB_Homeostasis|
pass[BIOMD0000000309_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000309#Files)
|pass|
pass[BIOMD0000000309_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000309#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e52e707aa641045eb352/download

Logs: https://api.biosimulations.org/logs/6752e52e707aa641045eb352?includeOutput=true

View: https://api.biosimulations.org/runs/6752e52e707aa641045eb352

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e52cc3054f763d550c64/download

Logs: https://api.biosimulations.org/logs/6752e52cc3054f763d550c64?includeOutput=true

View: https://api.biosimulations.org/runs/6752e52cc3054f763d550c64

HTTP response: 201
| +|[BIOMD0000000310](https://www.ebi.ac.uk/biomodels/BIOMD0000000310)
Tyson2003_Mutual_Inhibition|
pass[BIOMD0000000310_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000310#Files)
|pass|
pass[BIOMD0000000310_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000310#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e542707aa641045eb364/download

Logs: https://api.biosimulations.org/logs/6752e542707aa641045eb364?includeOutput=true

View: https://api.biosimulations.org/runs/6752e542707aa641045eb364

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e540707aa641045eb360/download

Logs: https://api.biosimulations.org/logs/6752e540707aa641045eb360?includeOutput=true

View: https://api.biosimulations.org/runs/6752e540707aa641045eb360

HTTP response: 201
| +|[BIOMD0000000311](https://www.ebi.ac.uk/biomodels/BIOMD0000000311)
Tyson2003_Mutual_Activation|
pass[BIOMD0000000311_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000311#Files)
|FAIL|
pass[BIOMD0000000311_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000311#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e5569fa297efdca1a589/download

Logs: https://api.biosimulations.org/logs/6752e5569fa297efdca1a589?includeOutput=true

View: https://api.biosimulations.org/runs/6752e5569fa297efdca1a589

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e5549fa297efdca1a586/download

Logs: https://api.biosimulations.org/logs/6752e5549fa297efdca1a586?includeOutput=true

View: https://api.biosimulations.org/runs/6752e5549fa297efdca1a586

HTTP response: 201
| +|[BIOMD0000000312](https://www.ebi.ac.uk/biomodels/BIOMD0000000312)
Tyson2003_Perfect_Adaption|
pass[BIOMD0000000312_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000312#Files)
|pass|
pass[BIOMD0000000312_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000312#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e5689fa297efdca1a59b/download

Logs: https://api.biosimulations.org/logs/6752e5689fa297efdca1a59b?includeOutput=true

View: https://api.biosimulations.org/runs/6752e5689fa297efdca1a59b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e565707aa641045eb383/download

Logs: https://api.biosimulations.org/logs/6752e565707aa641045eb383?includeOutput=true

View: https://api.biosimulations.org/runs/6752e565707aa641045eb383

HTTP response: 201
| +|[BIOMD0000000313](https://www.ebi.ac.uk/biomodels/BIOMD0000000313)
Raia2010 - IL13 Signalling MedB1|
pass[BIOMD0000000313_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000313#Files)
|pass|
pass[BIOMD0000000313_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000313#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e57a707aa641045eb39f/download

Logs: https://api.biosimulations.org/logs/6752e57a707aa641045eb39f?includeOutput=true

View: https://api.biosimulations.org/runs/6752e57a707aa641045eb39f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e5789fa297efdca1a5b1/download

Logs: https://api.biosimulations.org/logs/6752e5789fa297efdca1a5b1?includeOutput=true

View: https://api.biosimulations.org/runs/6752e5789fa297efdca1a5b1

HTTP response: 201
| +|[BIOMD0000000314](https://www.ebi.ac.uk/biomodels/BIOMD0000000314)
Raia2011 - IL13 L1236|
pass[BIOMD0000000314_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000314#Files)
|pass|
pass[BIOMD0000000314_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000314#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e58e9fa297efdca1a5c8/download

Logs: https://api.biosimulations.org/logs/6752e58e9fa297efdca1a5c8?includeOutput=true

View: https://api.biosimulations.org/runs/6752e58e9fa297efdca1a5c8

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e58c9fa297efdca1a5c4/download

Logs: https://api.biosimulations.org/logs/6752e58c9fa297efdca1a5c4?includeOutput=true

View: https://api.biosimulations.org/runs/6752e58c9fa297efdca1a5c4

HTTP response: 201
| +|[BIOMD0000000315](https://www.ebi.ac.uk/biomodels/BIOMD0000000315)
Montagne2011_Oligator_optimised|
pass[BIOMD0000000315_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000315#Files)
|pass|
pass[BIOMD0000000315_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000315#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e5a59fa297efdca1a5d6/download

Logs: https://api.biosimulations.org/logs/6752e5a59fa297efdca1a5d6?includeOutput=true

View: https://api.biosimulations.org/runs/6752e5a59fa297efdca1a5d6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e5a2c3054f763d550cdd/download

Logs: https://api.biosimulations.org/logs/6752e5a2c3054f763d550cdd?includeOutput=true

View: https://api.biosimulations.org/runs/6752e5a2c3054f763d550cdd

HTTP response: 201
| +|[BIOMD0000000316](https://www.ebi.ac.uk/biomodels/BIOMD0000000316)
Shen-Orr2002_FeedForward_AND_gate|
pass[BIOMD0000000316_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000316#Files)
|pass|
pass[BIOMD0000000316_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000316#Files)
|pass|
other```the symbol 'Ty' is not physically stored in the ModelData structure, it either does not exists or is defined by an assigment rule (hence it is not a terminal symbol), at ?loadSymbolValue@ModelDataLoadSymbolResolver@rrllvm@@UEAAPEAVValue@llvm@@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@AEBV?$ArrayRef@PEAVValue@llvm@@@4@@Z```
|
passDownload: https://api.biosimulations.org/results/6752e5b99fa297efdca1a5ee/download

Logs: https://api.biosimulations.org/logs/6752e5b99fa297efdca1a5ee?includeOutput=true

View: https://api.biosimulations.org/runs/6752e5b99fa297efdca1a5ee

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e5b7707aa641045eb3e9/download

Logs: https://api.biosimulations.org/logs/6752e5b7707aa641045eb3e9?includeOutput=true

View: https://api.biosimulations.org/runs/6752e5b7707aa641045eb3e9

HTTP response: 201
| +|[BIOMD0000000317](https://www.ebi.ac.uk/biomodels/BIOMD0000000317)
Shen-Orr2002_Single_Input_Module|
pass[BIOMD0000000317_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000317#Files)
|pass|
pass[BIOMD0000000317_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000317#Files)
|pass|
other```the symbol 'T1' is not physically stored in the ModelData structure, it either does not exists or is defined by an assigment rule (hence it is not a terminal symbol), at ?loadSymbolValue@ModelDataLoadSymbolResolver@rrllvm@@UEAAPEAVValue@llvm@@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@AEBV?$ArrayRef@PEAVValue@llvm@@@4@@Z```
|
passDownload: https://api.biosimulations.org/results/6752e5ce707aa641045eb3f9/download

Logs: https://api.biosimulations.org/logs/6752e5ce707aa641045eb3f9?includeOutput=true

View: https://api.biosimulations.org/runs/6752e5ce707aa641045eb3f9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e5cb707aa641045eb3f6/download

Logs: https://api.biosimulations.org/logs/6752e5cb707aa641045eb3f6?includeOutput=true

View: https://api.biosimulations.org/runs/6752e5cb707aa641045eb3f6

HTTP response: 201
| +|[BIOMD0000000318](https://www.ebi.ac.uk/biomodels/BIOMD0000000318)
Yao2008_Rb_E2F_Switch|
pass[BIOMD0000000318_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000318#Files)
|pass|
pass[BIOMD0000000318_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000318#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e5e2707aa641045eb412/download

Logs: https://api.biosimulations.org/logs/6752e5e2707aa641045eb412?includeOutput=true

View: https://api.biosimulations.org/runs/6752e5e2707aa641045eb412

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e5e0707aa641045eb40f/download

Logs: https://api.biosimulations.org/logs/6752e5e0707aa641045eb40f?includeOutput=true

View: https://api.biosimulations.org/runs/6752e5e0707aa641045eb40f

HTTP response: 201
| +|[BIOMD0000000319](https://www.ebi.ac.uk/biomodels/BIOMD0000000319)
Decroly1982_Enzymatic_Oscillator|
pass[BIOMD0000000319_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000319#Files)
|pass|
pass[BIOMD0000000319_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000319#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e5f69fa297efdca1a634/download

Logs: https://api.biosimulations.org/logs/6752e5f69fa297efdca1a634?includeOutput=true

View: https://api.biosimulations.org/runs/6752e5f69fa297efdca1a634

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e5f49fa297efdca1a630/download

Logs: https://api.biosimulations.org/logs/6752e5f49fa297efdca1a630?includeOutput=true

View: https://api.biosimulations.org/runs/6752e5f49fa297efdca1a630

HTTP response: 201
| +|
[BIOMD0000000320](https://www.ebi.ac.uk/biomodels/BIOMD0000000320)
Grange2001 - PK interaction ofGrange2001 - PK interaction of L-dopa and benserazide
|
pass[BIOMD0000000320_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000320#Files)
|pass|
pass[BIOMD0000000320_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000320#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e60b9fa297efdca1a653/download

Logs: https://api.biosimulations.org/logs/6752e60b9fa297efdca1a653?includeOutput=true

View: https://api.biosimulations.org/runs/6752e60b9fa297efdca1a653

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e609707aa641045eb435/download

Logs: https://api.biosimulations.org/logs/6752e609707aa641045eb435?includeOutput=true

View: https://api.biosimulations.org/runs/6752e609707aa641045eb435

HTTP response: 201
| +|[BIOMD0000000321](https://www.ebi.ac.uk/biomodels/BIOMD0000000321)
Grange2001 - L Dopa PK model|
pass[BIOMD0000000321_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000321#Files)
|pass|
pass[BIOMD0000000321_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000321#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e61e9fa297efdca1a666/download

Logs: https://api.biosimulations.org/logs/6752e61e9fa297efdca1a666?includeOutput=true

View: https://api.biosimulations.org/runs/6752e61e9fa297efdca1a666

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e61c9fa297efdca1a65c/download

Logs: https://api.biosimulations.org/logs/6752e61c9fa297efdca1a65c?includeOutput=true

View: https://api.biosimulations.org/runs/6752e61c9fa297efdca1a65c

HTTP response: 201
| +|[BIOMD0000000322](https://www.ebi.ac.uk/biomodels/BIOMD0000000322)
Kim2011_Oscillator_SimpleI|
pass[BIOMD0000000322_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000322#Files)
|pass|
pass[BIOMD0000000322_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000322#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e631707aa641045eb468/download

Logs: https://api.biosimulations.org/logs/6752e631707aa641045eb468?includeOutput=true

View: https://api.biosimulations.org/runs/6752e631707aa641045eb468

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e62e707aa641045eb459/download

Logs: https://api.biosimulations.org/logs/6752e62e707aa641045eb459?includeOutput=true

View: https://api.biosimulations.org/runs/6752e62e707aa641045eb459

HTTP response: 201
| +|[BIOMD0000000323](https://www.ebi.ac.uk/biomodels/BIOMD0000000323)
Kim2011_Oscillator_SimpleIII|
pass[BIOMD0000000323_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000323#Files)
|pass|
pass[BIOMD0000000323_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000323#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e643c3054f763d550d6f/download

Logs: https://api.biosimulations.org/logs/6752e643c3054f763d550d6f?includeOutput=true

View: https://api.biosimulations.org/runs/6752e643c3054f763d550d6f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e6419fa297efdca1a686/download

Logs: https://api.biosimulations.org/logs/6752e6419fa297efdca1a686?includeOutput=true

View: https://api.biosimulations.org/runs/6752e6419fa297efdca1a686

HTTP response: 201
| +|[BIOMD0000000324](https://www.ebi.ac.uk/biomodels/BIOMD0000000324)
Morris1981_MuscleFibre_Voltage_full|
pass[BIOMD0000000324_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000324#Files)
|pass|
pass[BIOMD0000000324_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000324#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e656707aa641045eb487/download

Logs: https://api.biosimulations.org/logs/6752e656707aa641045eb487?includeOutput=true

View: https://api.biosimulations.org/runs/6752e656707aa641045eb487

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e653c3054f763d550d82/download

Logs: https://api.biosimulations.org/logs/6752e653c3054f763d550d82?includeOutput=true

View: https://api.biosimulations.org/runs/6752e653c3054f763d550d82

HTTP response: 201
| +|[BIOMD0000000325](https://www.ebi.ac.uk/biomodels/BIOMD0000000325)
Palini2011_Minimal_2_Feedback_Model|
pass[BIOMD0000000325_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000325#Files)
|pass|
pass[BIOMD0000000325_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000325#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e667c3054f763d550d9e/download

Logs: https://api.biosimulations.org/logs/6752e667c3054f763d550d9e?includeOutput=true

View: https://api.biosimulations.org/runs/6752e667c3054f763d550d9e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e665707aa641045eb490/download

Logs: https://api.biosimulations.org/logs/6752e665707aa641045eb490?includeOutput=true

View: https://api.biosimulations.org/runs/6752e665707aa641045eb490

HTTP response: 201
| +|[BIOMD0000000326](https://www.ebi.ac.uk/biomodels/BIOMD0000000326)
DellOrco2009_phototransduction|
pass[BIOMD0000000326_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000326#Files)
|pass|
pass[BIOMD0000000326_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000326#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e67f9fa297efdca1a6c0/download

Logs: https://api.biosimulations.org/logs/6752e67f9fa297efdca1a6c0?includeOutput=true

View: https://api.biosimulations.org/runs/6752e67f9fa297efdca1a6c0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e67c707aa641045eb4bb/download

Logs: https://api.biosimulations.org/logs/6752e67c707aa641045eb4bb?includeOutput=true

View: https://api.biosimulations.org/runs/6752e67c707aa641045eb4bb

HTTP response: 201
| +|[BIOMD0000000327](https://www.ebi.ac.uk/biomodels/BIOMD0000000327)
Whitcomb2004_Bicarbonate_Pancreas|
pass[BIOMD0000000327_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000327#Files)
|pass|
pass[BIOMD0000000327_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000327#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e694707aa641045eb4cc/download

Logs: https://api.biosimulations.org/logs/6752e694707aa641045eb4cc?includeOutput=true

View: https://api.biosimulations.org/runs/6752e694707aa641045eb4cc

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e6929fa297efdca1a6cf/download

Logs: https://api.biosimulations.org/logs/6752e6929fa297efdca1a6cf?includeOutput=true

View: https://api.biosimulations.org/runs/6752e6929fa297efdca1a6cf

HTTP response: 201
| +|[BIOMD0000000328](https://www.ebi.ac.uk/biomodels/BIOMD0000000328)
Bucher2011_Atorvastatin_Metabolism|
pass[BIOMD0000000328_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000328#Files)
|pass|
pass[BIOMD0000000328_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000328#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e6abc3054f763d550de4/download

Logs: https://api.biosimulations.org/logs/6752e6abc3054f763d550de4?includeOutput=true

View: https://api.biosimulations.org/runs/6752e6abc3054f763d550de4

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e6a99fa297efdca1a6ed/download

Logs: https://api.biosimulations.org/logs/6752e6a99fa297efdca1a6ed?includeOutput=true

View: https://api.biosimulations.org/runs/6752e6a99fa297efdca1a6ed

HTTP response: 201
| +|
[BIOMD0000000329](https://www.ebi.ac.uk/biomodels/BIOMD0000000329)
Kummer2000 - Oscillations in CKummer2000 - Oscillations in Calcium Signalling
|
pass[BIOMD0000000329_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000329#Files)
|pass|
pass[BIOMD0000000329_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000329#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e6c2707aa641045eb52f/download

Logs: https://api.biosimulations.org/logs/6752e6c2707aa641045eb52f?includeOutput=true

View: https://api.biosimulations.org/runs/6752e6c2707aa641045eb52f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e6c0707aa641045eb527/download

Logs: https://api.biosimulations.org/logs/6752e6c0707aa641045eb527?includeOutput=true

View: https://api.biosimulations.org/runs/6752e6c0707aa641045eb527

HTTP response: 201
| +|[BIOMD0000000330](https://www.ebi.ac.uk/biomodels/BIOMD0000000330)
Larsen2004_CalciumSpiking|
pass[BIOMD0000000330_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000330#Files)
|pass|
pass[BIOMD0000000330_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000330#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e6d49fa297efdca1a72a/download

Logs: https://api.biosimulations.org/logs/6752e6d49fa297efdca1a72a?includeOutput=true

View: https://api.biosimulations.org/runs/6752e6d49fa297efdca1a72a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e6d2707aa641045eb53a/download

Logs: https://api.biosimulations.org/logs/6752e6d2707aa641045eb53a?includeOutput=true

View: https://api.biosimulations.org/runs/6752e6d2707aa641045eb53a

HTTP response: 201
| +|
[BIOMD0000000331](https://www.ebi.ac.uk/biomodels/BIOMD0000000331)
Larsen2004_CalciumSpiking_EnzyLarsen2004_CalciumSpiking_EnzymeBinding
|
pass[BIOMD0000000331_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000331#Files)
|pass|
pass[BIOMD0000000331_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000331#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e6eac3054f763d550e21/download

Logs: https://api.biosimulations.org/logs/6752e6eac3054f763d550e21?includeOutput=true

View: https://api.biosimulations.org/runs/6752e6eac3054f763d550e21

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e6e8707aa641045eb555/download

Logs: https://api.biosimulations.org/logs/6752e6e8707aa641045eb555?includeOutput=true

View: https://api.biosimulations.org/runs/6752e6e8707aa641045eb555

HTTP response: 201
| +|[BIOMD0000000332](https://www.ebi.ac.uk/biomodels/BIOMD0000000332)
Bungay2006_Plasma|
pass[BIOMD0000000332_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000332#Files)
|pass|
pass[BIOMD0000000332_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000332#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e6fdc3054f763d550e30/download

Logs: https://api.biosimulations.org/logs/6752e6fdc3054f763d550e30?includeOutput=true

View: https://api.biosimulations.org/runs/6752e6fdc3054f763d550e30

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e6fbc3054f763d550e29/download

Logs: https://api.biosimulations.org/logs/6752e6fbc3054f763d550e29?includeOutput=true

View: https://api.biosimulations.org/runs/6752e6fbc3054f763d550e29

HTTP response: 201
| +|[BIOMD0000000333](https://www.ebi.ac.uk/biomodels/BIOMD0000000333)
Bungay2006_FollicularFluid|
pass[BIOMD0000000333_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000333#Files)
|pass|
pass[BIOMD0000000333_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000333#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e71cc3054f763d550e4a/download

Logs: https://api.biosimulations.org/logs/6752e71cc3054f763d550e4a?includeOutput=true

View: https://api.biosimulations.org/runs/6752e71cc3054f763d550e4a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e7199fa297efdca1a767/download

Logs: https://api.biosimulations.org/logs/6752e7199fa297efdca1a767?includeOutput=true

View: https://api.biosimulations.org/runs/6752e7199fa297efdca1a767

HTTP response: 201
| +|[BIOMD0000000334](https://www.ebi.ac.uk/biomodels/BIOMD0000000334)
Bungay2003_Thrombin_Generation|
pass[BIOMD0000000334_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000334#Files)
|pass|
pass[BIOMD0000000334_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000334#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e735c3054f763d550e5c/download

Logs: https://api.biosimulations.org/logs/6752e735c3054f763d550e5c?includeOutput=true

View: https://api.biosimulations.org/runs/6752e735c3054f763d550e5c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e732c3054f763d550e56/download

Logs: https://api.biosimulations.org/logs/6752e732c3054f763d550e56?includeOutput=true

View: https://api.biosimulations.org/runs/6752e732c3054f763d550e56

HTTP response: 201
| +|[BIOMD0000000335](https://www.ebi.ac.uk/biomodels/BIOMD0000000335)
Hockin2002_BloodCoagulation|
pass[BIOMD0000000335_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000335#Files)
|pass|
pass[BIOMD0000000335_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000335#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e7549fa297efdca1a793/download

Logs: https://api.biosimulations.org/logs/6752e7549fa297efdca1a793?includeOutput=true

View: https://api.biosimulations.org/runs/6752e7549fa297efdca1a793

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e752707aa641045eb5a4/download

Logs: https://api.biosimulations.org/logs/6752e752707aa641045eb5a4?includeOutput=true

View: https://api.biosimulations.org/runs/6752e752707aa641045eb5a4

HTTP response: 201
| +|[BIOMD0000000336](https://www.ebi.ac.uk/biomodels/BIOMD0000000336)
Jones1994_BloodCoagulation|
pass[BIOMD0000000336_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000336#Files)
|pass|
pass[BIOMD0000000336_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000336#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e76c707aa641045eb5bf/download

Logs: https://api.biosimulations.org/logs/6752e76c707aa641045eb5bf?includeOutput=true

View: https://api.biosimulations.org/runs/6752e76c707aa641045eb5bf

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e76a9fa297efdca1a7aa/download

Logs: https://api.biosimulations.org/logs/6752e76a9fa297efdca1a7aa?includeOutput=true

View: https://api.biosimulations.org/runs/6752e76a9fa297efdca1a7aa

HTTP response: 201
| +|
[BIOMD0000000337](https://www.ebi.ac.uk/biomodels/BIOMD0000000337)
Pfeiffer2001_ATP-ProducingPathPfeiffer2001_ATP-ProducingPathways_CooperationCompetition
|
pass[BIOMD0000000337_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000337#Files)
|pass|
pass[BIOMD0000000337_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000337#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e7809fa297efdca1a7bd/download

Logs: https://api.biosimulations.org/logs/6752e7809fa297efdca1a7bd?includeOutput=true

View: https://api.biosimulations.org/runs/6752e7809fa297efdca1a7bd

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e77dc3054f763d550e8f/download

Logs: https://api.biosimulations.org/logs/6752e77dc3054f763d550e8f?includeOutput=true

View: https://api.biosimulations.org/runs/6752e77dc3054f763d550e8f

HTTP response: 201
| +|[BIOMD0000000338](https://www.ebi.ac.uk/biomodels/BIOMD0000000338)
Wajima2009_BloodCoagulation_aPTTtest|
pass[BIOMD0000000338_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000338#Files)
|pass|
pass[BIOMD0000000338_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000338#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e792c3054f763d550ea7/download

Logs: https://api.biosimulations.org/logs/6752e792c3054f763d550ea7?includeOutput=true

View: https://api.biosimulations.org/runs/6752e792c3054f763d550ea7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e78fc3054f763d550e9b/download

Logs: https://api.biosimulations.org/logs/6752e78fc3054f763d550e9b?includeOutput=true

View: https://api.biosimulations.org/runs/6752e78fc3054f763d550e9b

HTTP response: 201
| +|[BIOMD0000000339](https://www.ebi.ac.uk/biomodels/BIOMD0000000339)
Wajima2009_BloodCoagulation_PTtest|
pass[BIOMD0000000339_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000339#Files)
|pass|
pass[BIOMD0000000339_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000339#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e7a7707aa641045eb5ed/download

Logs: https://api.biosimulations.org/logs/6752e7a7707aa641045eb5ed?includeOutput=true

View: https://api.biosimulations.org/runs/6752e7a7707aa641045eb5ed

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e7a49fa297efdca1a7e6/download

Logs: https://api.biosimulations.org/logs/6752e7a49fa297efdca1a7e6?includeOutput=true

View: https://api.biosimulations.org/runs/6752e7a49fa297efdca1a7e6

HTTP response: 201
| +|
[BIOMD0000000340](https://www.ebi.ac.uk/biomodels/BIOMD0000000340)
Wajima2009_BloodCoagulation_waWajima2009_BloodCoagulation_warfarin_heparin
|
pass[BIOMD0000000340_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000340#Files)
|pass|
pass[BIOMD0000000340_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000340#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e7bc707aa641045eb610/download

Logs: https://api.biosimulations.org/logs/6752e7bc707aa641045eb610?includeOutput=true

View: https://api.biosimulations.org/runs/6752e7bc707aa641045eb610

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e7ba707aa641045eb60d/download

Logs: https://api.biosimulations.org/logs/6752e7ba707aa641045eb60d?includeOutput=true

View: https://api.biosimulations.org/runs/6752e7ba707aa641045eb60d

HTTP response: 201
| +|[BIOMD0000000341](https://www.ebi.ac.uk/biomodels/BIOMD0000000341)
Topp2000_BetaCellMass_Diabetes|
pass[BIOMD0000000341_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000341#Files)
|pass|
pass[BIOMD0000000341_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000341#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e7d4707aa641045eb62b/download

Logs: https://api.biosimulations.org/logs/6752e7d4707aa641045eb62b?includeOutput=true

View: https://api.biosimulations.org/runs/6752e7d4707aa641045eb62b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e7d19fa297efdca1a810/download

Logs: https://api.biosimulations.org/logs/6752e7d19fa297efdca1a810?includeOutput=true

View: https://api.biosimulations.org/runs/6752e7d19fa297efdca1a810

HTTP response: 201
| +|[BIOMD0000000342](https://www.ebi.ac.uk/biomodels/BIOMD0000000342)
Zi2011_TGF-beta_Pathway|
pass[BIOMD0000000342_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000342#Files)
|FAIL|
MultipleSEDMLs['Zi2011_fig1Cblue.sedml', 'Zi2011_fig1Cred.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000343](https://www.ebi.ac.uk/biomodels/BIOMD0000000343)
Brannmark2010_InsulinSignallinBrannmark2010_InsulinSignalling_Mifamodel
|
pass[BIOMD0000000343_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000343#Files)
|FAIL|
FAIL[BIOMD0000000343_withevent.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000343#Files)
|pass|
SEDMLfile```failed to validate SEDML file BIOMD0000000343_withevent.sedml```
|
FAILDownload: https://api.biosimulations.org/results/6752e7e79fa297efdca1a820/download

Logs: https://api.biosimulations.org/logs/6752e7e79fa297efdca1a820?includeOutput=true

View: https://api.biosimulations.org/runs/6752e7e79fa297efdca1a820

HTTP response: 201

Error message: `/root/archive.omex` is not a valid COMBINE/OMEX archive. - The SED-ML file at location `./BIOMD0000000343_withevent.sedml` is invalid. - Model `model` is invalid. - The model file `BIOMD0000000343_withevent.xml` is invalid. - `/tmp/tmp6u6baya0/./BIOMD0000000343_withevent.xml` is not a file.

Exception type: ValueError
|
FAILDownload: https://api.biosimulations.org/results/6752e7e6c3054f763d550efe/download

Logs: https://api.biosimulations.org/logs/6752e7e6c3054f763d550efe?includeOutput=true

View: https://api.biosimulations.org/runs/6752e7e6c3054f763d550efe

HTTP response: 201

Error message: `/root/archive.omex` is not a valid COMBINE/OMEX archive. - The SED-ML file at location `./BIOMD0000000343_withevent.sedml` is invalid. - Model `model` is invalid. - The model file `BIOMD0000000343_withevent.xml` is invalid. - `/tmp/tmp1mjdnurb/./BIOMD0000000343_withevent.xml` is not a file.

Exception type: ValueError
| +|
[BIOMD0000000344](https://www.ebi.ac.uk/biomodels/BIOMD0000000344)
Proctor2011_ProteinHomeostasisProctor2011_ProteinHomeostasis_NormalCondition
|
pass[BIOMD0000000344_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000344#Files)
|pass|
MultipleSEDMLs['BIOMD0000000344_url.sedml', 'MODEL1005280000_highstress.sedml', 'MODEL1005280000_moderatestress.sedml']
|NA|NA|NA|NA| +|[BIOMD0000000345](https://www.ebi.ac.uk/biomodels/BIOMD0000000345)
Koschorreck2008_InsulinClearance|
pass[BIOMD0000000345_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000345#Files)
|pass|
pass[BIOMD0000000345_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000345#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e7fb707aa641045eb64a/download

Logs: https://api.biosimulations.org/logs/6752e7fb707aa641045eb64a?includeOutput=true

View: https://api.biosimulations.org/runs/6752e7fb707aa641045eb64a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e7f9c3054f763d550f0c/download

Logs: https://api.biosimulations.org/logs/6752e7f9c3054f763d550f0c?includeOutput=true

View: https://api.biosimulations.org/runs/6752e7f9c3054f763d550f0c

HTTP response: 201
| +|[BIOMD0000000346](https://www.ebi.ac.uk/biomodels/BIOMD0000000346)
FitzHugh1961_NerveMembrane|
pass[BIOMD0000000346_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000346#Files)
|FAIL|
pass[BIOMD0000000346_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000346#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e8109fa297efdca1a85f/download

Logs: https://api.biosimulations.org/logs/6752e8109fa297efdca1a85f?includeOutput=true

View: https://api.biosimulations.org/runs/6752e8109fa297efdca1a85f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e80e707aa641045eb667/download

Logs: https://api.biosimulations.org/logs/6752e80e707aa641045eb667?includeOutput=true

View: https://api.biosimulations.org/runs/6752e80e707aa641045eb667

HTTP response: 201
| +|
[BIOMD0000000347](https://www.ebi.ac.uk/biomodels/BIOMD0000000347)
Bachmann2011_JAK2-STAT5_FeedbaBachmann2011_JAK2-STAT5_FeedbackControl
|
pass[BIOMD0000000347_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000347#Files)
|pass|
pass[BIOMD0000000347_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000347#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e8249fa297efdca1a870/download

Logs: https://api.biosimulations.org/logs/6752e8249fa297efdca1a870?includeOutput=true

View: https://api.biosimulations.org/runs/6752e8249fa297efdca1a870

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e822707aa641045eb670/download

Logs: https://api.biosimulations.org/logs/6752e822707aa641045eb670?includeOutput=true

View: https://api.biosimulations.org/runs/6752e822707aa641045eb670

HTTP response: 201
| +|[BIOMD0000000348](https://www.ebi.ac.uk/biomodels/BIOMD0000000348)
Fridlyand2010_GlucoseSensitivity_A|
pass[BIOMD0000000348_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000348#Files)
|pass|
pass[BIOMD0000000348_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000348#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e83a707aa641045eb690/download

Logs: https://api.biosimulations.org/logs/6752e83a707aa641045eb690?includeOutput=true

View: https://api.biosimulations.org/runs/6752e83a707aa641045eb690

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e8389fa297efdca1a885/download

Logs: https://api.biosimulations.org/logs/6752e8389fa297efdca1a885?includeOutput=true

View: https://api.biosimulations.org/runs/6752e8389fa297efdca1a885

HTTP response: 201
| +|[BIOMD0000000349](https://www.ebi.ac.uk/biomodels/BIOMD0000000349)
Fridlyand2010_GlucoseSensitivity_B|
pass[BIOMD0000000349_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000349#Files)
|pass|
pass[BIOMD0000000349_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000349#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e84f9fa297efdca1a89c/download

Logs: https://api.biosimulations.org/logs/6752e84f9fa297efdca1a89c?includeOutput=true

View: https://api.biosimulations.org/runs/6752e84f9fa297efdca1a89c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e84dc3054f763d550f6e/download

Logs: https://api.biosimulations.org/logs/6752e84dc3054f763d550f6e?includeOutput=true

View: https://api.biosimulations.org/runs/6752e84dc3054f763d550f6e

HTTP response: 201
| +|
[BIOMD0000000350](https://www.ebi.ac.uk/biomodels/BIOMD0000000350)
Troein2011_ClockCircuit_OstreoTroein2011_ClockCircuit_OstreococcusTauri
|
pass[BIOMD0000000350_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000350#Files)
|pass|
pass[BIOMD0000000350_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000350#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e864c3054f763d550f7b/download

Logs: https://api.biosimulations.org/logs/6752e864c3054f763d550f7b?includeOutput=true

View: https://api.biosimulations.org/runs/6752e864c3054f763d550f7b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e862707aa641045eb6b0/download

Logs: https://api.biosimulations.org/logs/6752e862707aa641045eb6b0?includeOutput=true

View: https://api.biosimulations.org/runs/6752e862707aa641045eb6b0

HTTP response: 201
| +|
[BIOMD0000000351](https://www.ebi.ac.uk/biomodels/BIOMD0000000351)
Vernoux2011_AuxinSignaling_AuxVernoux2011_AuxinSignaling_AuxinSingleStepInput
|
pass[BIOMD0000000351_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000351#Files)
|pass|
pass[BIOMD0000000351_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000351#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e8799fa297efdca1a8cf/download

Logs: https://api.biosimulations.org/logs/6752e8799fa297efdca1a8cf?includeOutput=true

View: https://api.biosimulations.org/runs/6752e8799fa297efdca1a8cf

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e876707aa641045eb6cc/download

Logs: https://api.biosimulations.org/logs/6752e876707aa641045eb6cc?includeOutput=true

View: https://api.biosimulations.org/runs/6752e876707aa641045eb6cc

HTTP response: 201
| +|
[BIOMD0000000352](https://www.ebi.ac.uk/biomodels/BIOMD0000000352)
Vernoux2011_AuxinSignaling_AuxVernoux2011_AuxinSignaling_AuxinFluctuating
|
pass[BIOMD0000000352_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000352#Files)
|pass|
pass[BIOMD0000000352_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000352#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e88d9fa297efdca1a8e8/download

Logs: https://api.biosimulations.org/logs/6752e88d9fa297efdca1a8e8?includeOutput=true

View: https://api.biosimulations.org/runs/6752e88d9fa297efdca1a8e8

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e88bc3054f763d550fa4/download

Logs: https://api.biosimulations.org/logs/6752e88bc3054f763d550fa4?includeOutput=true

View: https://api.biosimulations.org/runs/6752e88bc3054f763d550fa4

HTTP response: 201
| +|
[BIOMD0000000353](https://www.ebi.ac.uk/biomodels/BIOMD0000000353)
Nag2011_ChloroplasticStarchDegNag2011_ChloroplasticStarchDegradation
|
pass[BIOMD0000000353_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000353#Files)
|FAIL|
pass[BIOMD0000000353_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000353#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e8a29fa297efdca1a901/download

Logs: https://api.biosimulations.org/logs/6752e8a29fa297efdca1a901?includeOutput=true

View: https://api.biosimulations.org/runs/6752e8a29fa297efdca1a901

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e89fc3054f763d550fb3/download

Logs: https://api.biosimulations.org/logs/6752e89fc3054f763d550fb3?includeOutput=true

View: https://api.biosimulations.org/runs/6752e89fc3054f763d550fb3

HTTP response: 201
| +|
[BIOMD0000000354](https://www.ebi.ac.uk/biomodels/BIOMD0000000354)
Abell2011_CalciumSignaling_WitAbell2011_CalciumSignaling_WithoutAdaptation
|
pass[BIOMD0000000354_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000354#Files)
|pass|
pass[BIOMD0000000354_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000354#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e8b6c3054f763d550fcd/download

Logs: https://api.biosimulations.org/logs/6752e8b6c3054f763d550fcd?includeOutput=true

View: https://api.biosimulations.org/runs/6752e8b6c3054f763d550fcd

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e8b49fa297efdca1a908/download

Logs: https://api.biosimulations.org/logs/6752e8b49fa297efdca1a908?includeOutput=true

View: https://api.biosimulations.org/runs/6752e8b49fa297efdca1a908

HTTP response: 201
| +|
[BIOMD0000000355](https://www.ebi.ac.uk/biomodels/BIOMD0000000355)
Abell2011_CalciumSignaling_WitAbell2011_CalciumSignaling_WithAdaptation
|
pass[BIOMD0000000355_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000355#Files)
|FAIL|
pass[BIOMD0000000355_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000355#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e8cb9fa297efdca1a92b/download

Logs: https://api.biosimulations.org/logs/6752e8cb9fa297efdca1a92b?includeOutput=true

View: https://api.biosimulations.org/runs/6752e8cb9fa297efdca1a92b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e8c8c3054f763d550fdf/download

Logs: https://api.biosimulations.org/logs/6752e8c8c3054f763d550fdf?includeOutput=true

View: https://api.biosimulations.org/runs/6752e8c8c3054f763d550fdf

HTTP response: 201
| +|
[BIOMD0000000356](https://www.ebi.ac.uk/biomodels/BIOMD0000000356)
Nyman2011_M3Hierarachical_InsuNyman2011_M3Hierarachical_InsulinGlucosedynamics
|
pass[BIOMD0000000356_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000356#Files)
|pass|
pass[BIOMD0000000356_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000356#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e8e19fa297efdca1a93e/download

Logs: https://api.biosimulations.org/logs/6752e8e19fa297efdca1a93e?includeOutput=true

View: https://api.biosimulations.org/runs/6752e8e19fa297efdca1a93e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e8de707aa641045eb72d/download

Logs: https://api.biosimulations.org/logs/6752e8de707aa641045eb72d?includeOutput=true

View: https://api.biosimulations.org/runs/6752e8de707aa641045eb72d

HTTP response: 201
| +|
[BIOMD0000000357](https://www.ebi.ac.uk/biomodels/BIOMD0000000357)
Lee2010_ThrombinActivation_OneLee2010_ThrombinActivation_OneForm_reduced
|
pass[BIOMD0000000357_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000357#Files)
|pass|
pass[BIOMD0000000357_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000357#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e8f9707aa641045eb748/download

Logs: https://api.biosimulations.org/logs/6752e8f9707aa641045eb748?includeOutput=true

View: https://api.biosimulations.org/runs/6752e8f9707aa641045eb748

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e8f79fa297efdca1a955/download

Logs: https://api.biosimulations.org/logs/6752e8f79fa297efdca1a955?includeOutput=true

View: https://api.biosimulations.org/runs/6752e8f79fa297efdca1a955

HTTP response: 201
| +|[BIOMD0000000359](https://www.ebi.ac.uk/biomodels/BIOMD0000000359)
Panteleev2002_TFPImechanism_schmema3|
pass[BIOMD0000000359_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000359#Files)
|pass|
pass[BIOMD0000000359_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000359#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e90bc3054f763d551009/download

Logs: https://api.biosimulations.org/logs/6752e90bc3054f763d551009?includeOutput=true

View: https://api.biosimulations.org/runs/6752e90bc3054f763d551009

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e9099fa297efdca1a95d/download

Logs: https://api.biosimulations.org/logs/6752e9099fa297efdca1a95d?includeOutput=true

View: https://api.biosimulations.org/runs/6752e9099fa297efdca1a95d

HTTP response: 201
| +|[BIOMD0000000360](https://www.ebi.ac.uk/biomodels/BIOMD0000000360)
Panteleev2002_TFPImechanism_schmema2|
pass[BIOMD0000000360_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000360#Files)
|pass|
pass[BIOMD0000000360_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000360#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e91e707aa641045eb773/download

Logs: https://api.biosimulations.org/logs/6752e91e707aa641045eb773?includeOutput=true

View: https://api.biosimulations.org/runs/6752e91e707aa641045eb773

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e91cc3054f763d551028/download

Logs: https://api.biosimulations.org/logs/6752e91cc3054f763d551028?includeOutput=true

View: https://api.biosimulations.org/runs/6752e91cc3054f763d551028

HTTP response: 201
| +|[BIOMD0000000361](https://www.ebi.ac.uk/biomodels/BIOMD0000000361)
Panteleev2002_TFPImechanism_schmema1|
pass[BIOMD0000000361_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000361#Files)
|pass|
pass[BIOMD0000000361_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000361#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e9329fa297efdca1a99a/download

Logs: https://api.biosimulations.org/logs/6752e9329fa297efdca1a99a?includeOutput=true

View: https://api.biosimulations.org/runs/6752e9329fa297efdca1a99a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e9309fa297efdca1a997/download

Logs: https://api.biosimulations.org/logs/6752e9309fa297efdca1a997?includeOutput=true

View: https://api.biosimulations.org/runs/6752e9309fa297efdca1a997

HTTP response: 201
| +|[BIOMD0000000362](https://www.ebi.ac.uk/biomodels/BIOMD0000000362)
Butenas2004_BloodCoagulation|
pass[BIOMD0000000362_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000362#Files)
|pass|
pass[BIOMD0000000362_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000362#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e9489fa297efdca1a9b0/download

Logs: https://api.biosimulations.org/logs/6752e9489fa297efdca1a9b0?includeOutput=true

View: https://api.biosimulations.org/runs/6752e9489fa297efdca1a9b0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e9459fa297efdca1a9ad/download

Logs: https://api.biosimulations.org/logs/6752e9459fa297efdca1a9ad?includeOutput=true

View: https://api.biosimulations.org/runs/6752e9459fa297efdca1a9ad

HTTP response: 201
| +|
[BIOMD0000000363](https://www.ebi.ac.uk/biomodels/BIOMD0000000363)
Lee2010_ThrombinActivation_OneLee2010_ThrombinActivation_OneForm_minimal
|
pass[BIOMD0000000363_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000363#Files)
|pass|
pass[BIOMD0000000363_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000363#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e95dc3054f763d551055/download

Logs: https://api.biosimulations.org/logs/6752e95dc3054f763d551055?includeOutput=true

View: https://api.biosimulations.org/runs/6752e95dc3054f763d551055

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e95b707aa641045eb7b2/download

Logs: https://api.biosimulations.org/logs/6752e95b707aa641045eb7b2?includeOutput=true

View: https://api.biosimulations.org/runs/6752e95b707aa641045eb7b2

HTTP response: 201
| +|[BIOMD0000000364](https://www.ebi.ac.uk/biomodels/BIOMD0000000364)
Lee2010_ThrombinActivation_OneForm|
pass[BIOMD0000000364_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000364#Files)
|pass|
pass[BIOMD0000000364_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000364#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e9719fa297efdca1a9e9/download

Logs: https://api.biosimulations.org/logs/6752e9719fa297efdca1a9e9?includeOutput=true

View: https://api.biosimulations.org/runs/6752e9719fa297efdca1a9e9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e96f9fa297efdca1a9e6/download

Logs: https://api.biosimulations.org/logs/6752e96f9fa297efdca1a9e6?includeOutput=true

View: https://api.biosimulations.org/runs/6752e96f9fa297efdca1a9e6

HTTP response: 201
| +|
[BIOMD0000000365](https://www.ebi.ac.uk/biomodels/BIOMD0000000365)
Hockin1999_BloodCoagulation_VaHockin1999_BloodCoagulation_VaInactivation
|
pass[BIOMD0000000365_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000365#Files)
|pass|
pass[BIOMD0000000365_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000365#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e986c3054f763d55107e/download

Logs: https://api.biosimulations.org/logs/6752e986c3054f763d55107e?includeOutput=true

View: https://api.biosimulations.org/runs/6752e986c3054f763d55107e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e984c3054f763d55107b/download

Logs: https://api.biosimulations.org/logs/6752e984c3054f763d55107b?includeOutput=true

View: https://api.biosimulations.org/runs/6752e984c3054f763d55107b

HTTP response: 201
| +|
[BIOMD0000000366](https://www.ebi.ac.uk/biomodels/BIOMD0000000366)
Orfao2008_ThrombinGeneration_AOrfao2008_ThrombinGeneration_AmidolyticActivity
|
pass[BIOMD0000000366_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000366#Files)
|pass|
pass[BIOMD0000000366_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000366#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e99c707aa641045eb7ea/download

Logs: https://api.biosimulations.org/logs/6752e99c707aa641045eb7ea?includeOutput=true

View: https://api.biosimulations.org/runs/6752e99c707aa641045eb7ea

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e99ac3054f763d55108f/download

Logs: https://api.biosimulations.org/logs/6752e99ac3054f763d55108f?includeOutput=true

View: https://api.biosimulations.org/runs/6752e99ac3054f763d55108f

HTTP response: 201
| +|
[BIOMD0000000367](https://www.ebi.ac.uk/biomodels/BIOMD0000000367)
Mueller2008_ThrombinGenerationMueller2008_ThrombinGeneration_minimal
|
pass[BIOMD0000000367_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000367#Files)
|pass|
pass[BIOMD0000000367_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000367#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e9ae9fa297efdca1aa2b/download

Logs: https://api.biosimulations.org/logs/6752e9ae9fa297efdca1aa2b?includeOutput=true

View: https://api.biosimulations.org/runs/6752e9ae9fa297efdca1aa2b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e9ac707aa641045eb7f5/download

Logs: https://api.biosimulations.org/logs/6752e9ac707aa641045eb7f5?includeOutput=true

View: https://api.biosimulations.org/runs/6752e9ac707aa641045eb7f5

HTTP response: 201
| +|[BIOMD0000000369](https://www.ebi.ac.uk/biomodels/BIOMD0000000369)
Beltrami1995_ThrombinGeneration_D|
pass[BIOMD0000000369_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000369#Files)
|pass|
pass[BIOMD0000000369_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000369#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e9c1707aa641045eb80c/download

Logs: https://api.biosimulations.org/logs/6752e9c1707aa641045eb80c?includeOutput=true

View: https://api.biosimulations.org/runs/6752e9c1707aa641045eb80c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e9bfc3054f763d5510b9/download

Logs: https://api.biosimulations.org/logs/6752e9bfc3054f763d5510b9?includeOutput=true

View: https://api.biosimulations.org/runs/6752e9bfc3054f763d5510b9

HTTP response: 201
| +|[BIOMD0000000370](https://www.ebi.ac.uk/biomodels/BIOMD0000000370)
Vinod2011_MitoticExit|
pass[BIOMD0000000370_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000370#Files)
|pass|
pass[BIOMD0000000370_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000370#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e9d59fa297efdca1aa57/download

Logs: https://api.biosimulations.org/logs/6752e9d59fa297efdca1aa57?includeOutput=true

View: https://api.biosimulations.org/runs/6752e9d59fa297efdca1aa57

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e9d3c3054f763d5510ca/download

Logs: https://api.biosimulations.org/logs/6752e9d3c3054f763d5510ca?includeOutput=true

View: https://api.biosimulations.org/runs/6752e9d3c3054f763d5510ca

HTTP response: 201
| +|
[BIOMD0000000371](https://www.ebi.ac.uk/biomodels/BIOMD0000000371)
DeVries2000_PancreaticBetaCellDeVries2000_PancreaticBetaCells_InsulinSecretion
|
pass[BIOMD0000000371_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000371#Files)
|pass|
pass[BIOMD0000000371_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000371#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e9eb9fa297efdca1aa65/download

Logs: https://api.biosimulations.org/logs/6752e9eb9fa297efdca1aa65?includeOutput=true

View: https://api.biosimulations.org/runs/6752e9eb9fa297efdca1aa65

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e9e9c3054f763d5510d9/download

Logs: https://api.biosimulations.org/logs/6752e9e9c3054f763d5510d9?includeOutput=true

View: https://api.biosimulations.org/runs/6752e9e9c3054f763d5510d9

HTTP response: 201
| +|[BIOMD0000000372](https://www.ebi.ac.uk/biomodels/BIOMD0000000372)
Tolic2000_InsulinGlucoseFeedback|
pass[BIOMD0000000372_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000372#Files)
|pass|
pass[BIOMD0000000372_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000372#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752e9fcc3054f763d5510ec/download

Logs: https://api.biosimulations.org/logs/6752e9fcc3054f763d5510ec?includeOutput=true

View: https://api.biosimulations.org/runs/6752e9fcc3054f763d5510ec

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752e9fac3054f763d5510e4/download

Logs: https://api.biosimulations.org/logs/6752e9fac3054f763d5510e4?includeOutput=true

View: https://api.biosimulations.org/runs/6752e9fac3054f763d5510e4

HTTP response: 201
| +|
[BIOMD0000000373](https://www.ebi.ac.uk/biomodels/BIOMD0000000373)
Bertram2004_PancreaticBetaCellBertram2004_PancreaticBetaCell_modelB
|
pass[BIOMD0000000373_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000373#Files)
|pass|
pass[373.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000373#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6752ea10c3054f763d551106/download

Logs: https://api.biosimulations.org/logs/6752ea10c3054f763d551106?includeOutput=true

View: https://api.biosimulations.org/runs/6752ea10c3054f763d551106

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ea0ec3054f763d551103/download

Logs: https://api.biosimulations.org/logs/6752ea0ec3054f763d551103?includeOutput=true

View: https://api.biosimulations.org/runs/6752ea0ec3054f763d551103

HTTP response: 201
| +|[BIOMD0000000374](https://www.ebi.ac.uk/biomodels/BIOMD0000000374)
Bertram1995_PancreaticBetaCell_CRAC|
pass[BIOMD0000000374_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000374#Files)
|pass|
pass[374.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000374#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6752ea25c3054f763d551117/download

Logs: https://api.biosimulations.org/logs/6752ea25c3054f763d551117?includeOutput=true

View: https://api.biosimulations.org/runs/6752ea25c3054f763d551117

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ea239fa297efdca1aa9e/download

Logs: https://api.biosimulations.org/logs/6752ea239fa297efdca1aa9e?includeOutput=true

View: https://api.biosimulations.org/runs/6752ea239fa297efdca1aa9e

HTTP response: 201
| +|[BIOMD0000000375](https://www.ebi.ac.uk/biomodels/BIOMD0000000375)
Mears1997_CRAC_PancreaticBetaCells|
pass[BIOMD0000000375_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000375#Files)
|pass|
pass[375.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000375#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6752ea3ac3054f763d55113c/download

Logs: https://api.biosimulations.org/logs/6752ea3ac3054f763d55113c?includeOutput=true

View: https://api.biosimulations.org/runs/6752ea3ac3054f763d55113c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ea389fa297efdca1aabe/download

Logs: https://api.biosimulations.org/logs/6752ea389fa297efdca1aabe?includeOutput=true

View: https://api.biosimulations.org/runs/6752ea389fa297efdca1aabe

HTTP response: 201
| +|[BIOMD0000000376](https://www.ebi.ac.uk/biomodels/BIOMD0000000376)
Bertram2007_IsletCell_Oscillations|
pass[BIOMD0000000376_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000376#Files)
|FAIL|
pass[376.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000376#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6752ea4ec3054f763d55115b/download

Logs: https://api.biosimulations.org/logs/6752ea4ec3054f763d55115b?includeOutput=true

View: https://api.biosimulations.org/runs/6752ea4ec3054f763d55115b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ea4c9fa297efdca1aae2/download

Logs: https://api.biosimulations.org/logs/6752ea4c9fa297efdca1aae2?includeOutput=true

View: https://api.biosimulations.org/runs/6752ea4c9fa297efdca1aae2

HTTP response: 201
| +|
[BIOMD0000000377](https://www.ebi.ac.uk/biomodels/BIOMD0000000377)
Bertram2000_PancreaticBetaCellBertram2000_PancreaticBetaCells_Oscillations
|
pass[BIOMD0000000377_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000377#Files)
|pass|
pass[377.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000377#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6752ea649fa297efdca1aaf4/download

Logs: https://api.biosimulations.org/logs/6752ea649fa297efdca1aaf4?includeOutput=true

View: https://api.biosimulations.org/runs/6752ea649fa297efdca1aaf4

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ea61707aa641045eb8d1/download

Logs: https://api.biosimulations.org/logs/6752ea61707aa641045eb8d1?includeOutput=true

View: https://api.biosimulations.org/runs/6752ea61707aa641045eb8d1

HTTP response: 201
| +|[BIOMD0000000378](https://www.ebi.ac.uk/biomodels/BIOMD0000000378)
Chay1997_CalciumConcentration|
pass[BIOMD0000000378_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000378#Files)
|pass|
pass[378.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000378#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6752ea779fa297efdca1ab09/download

Logs: https://api.biosimulations.org/logs/6752ea779fa297efdca1ab09?includeOutput=true

View: https://api.biosimulations.org/runs/6752ea779fa297efdca1ab09

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ea75707aa641045eb8e6/download

Logs: https://api.biosimulations.org/logs/6752ea75707aa641045eb8e6?includeOutput=true

View: https://api.biosimulations.org/runs/6752ea75707aa641045eb8e6

HTTP response: 201
| +|
[BIOMD0000000379](https://www.ebi.ac.uk/biomodels/BIOMD0000000379)
DallaMan2007_MealModel_GlucoseDallaMan2007_MealModel_GlucoseInsulinSystem
|
pass[BIOMD0000000379_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000379#Files)
|pass|
pass[BIOMD0000000379_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000379#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ea8c9fa297efdca1ab1d/download

Logs: https://api.biosimulations.org/logs/6752ea8c9fa297efdca1ab1d?includeOutput=true

View: https://api.biosimulations.org/runs/6752ea8c9fa297efdca1ab1d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ea8ac3054f763d551191/download

Logs: https://api.biosimulations.org/logs/6752ea8ac3054f763d551191?includeOutput=true

View: https://api.biosimulations.org/runs/6752ea8ac3054f763d551191

HTTP response: 201
| +|[BIOMD0000000381](https://www.ebi.ac.uk/biomodels/BIOMD0000000381)
Maree2006_DuCa_Type1DiabetesModel|
pass[BIOMD0000000381_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000381#Files)
|pass|
pass[BIOMD0000000381_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000381#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752eaa09fa297efdca1ab2c/download

Logs: https://api.biosimulations.org/logs/6752eaa09fa297efdca1ab2c?includeOutput=true

View: https://api.biosimulations.org/runs/6752eaa09fa297efdca1ab2c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ea9ec3054f763d5511aa/download

Logs: https://api.biosimulations.org/logs/6752ea9ec3054f763d5511aa?includeOutput=true

View: https://api.biosimulations.org/runs/6752ea9ec3054f763d5511aa

HTTP response: 201
| +|
[BIOMD0000000382](https://www.ebi.ac.uk/biomodels/BIOMD0000000382)
Sturis1991_InsulinGlucoseModelSturis1991_InsulinGlucoseModel_UltradianOscillation
|
pass[BIOMD0000000382_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000382#Files)
|pass|
pass[BIOMD0000000382_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000382#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752eab49fa297efdca1ab40/download

Logs: https://api.biosimulations.org/logs/6752eab49fa297efdca1ab40?includeOutput=true

View: https://api.biosimulations.org/runs/6752eab49fa297efdca1ab40

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752eab2c3054f763d5511ba/download

Logs: https://api.biosimulations.org/logs/6752eab2c3054f763d5511ba?includeOutput=true

View: https://api.biosimulations.org/runs/6752eab2c3054f763d5511ba

HTTP response: 201
| +|
[BIOMD0000000383](https://www.ebi.ac.uk/biomodels/BIOMD0000000383)
Arnold2011_Farquhar1980_RuBisCArnold2011_Farquhar1980_RuBisCO-CalvinCycle
|
pass[BIOMD0000000383_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000383#Files)
|pass|
pass[BIOMD0000000383_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000383#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752eac8707aa641045eb94d/download

Logs: https://api.biosimulations.org/logs/6752eac8707aa641045eb94d?includeOutput=true

View: https://api.biosimulations.org/runs/6752eac8707aa641045eb94d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752eac69fa297efdca1ab50/download

Logs: https://api.biosimulations.org/logs/6752eac69fa297efdca1ab50?includeOutput=true

View: https://api.biosimulations.org/runs/6752eac69fa297efdca1ab50

HTTP response: 201
| +|
[BIOMD0000000384](https://www.ebi.ac.uk/biomodels/BIOMD0000000384)
Arnold2011_Medlyn2002_RuBisCO-Arnold2011_Medlyn2002_RuBisCO-CalvinCycle
|
pass[BIOMD0000000384_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000384#Files)
|pass|
pass[BIOMD0000000384_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000384#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752eadcc3054f763d5511dd/download

Logs: https://api.biosimulations.org/logs/6752eadcc3054f763d5511dd?includeOutput=true

View: https://api.biosimulations.org/runs/6752eadcc3054f763d5511dd

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752eada707aa641045eb95d/download

Logs: https://api.biosimulations.org/logs/6752eada707aa641045eb95d?includeOutput=true

View: https://api.biosimulations.org/runs/6752eada707aa641045eb95d

HTTP response: 201
| +|
[BIOMD0000000385](https://www.ebi.ac.uk/biomodels/BIOMD0000000385)
Arnold2011_Schultz2003_RuBisCOArnold2011_Schultz2003_RuBisCO-CalvinCycle
|
pass[BIOMD0000000385_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000385#Files)
|pass|
pass[BIOMD0000000385_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000385#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752eaf1707aa641045eb96e/download

Logs: https://api.biosimulations.org/logs/6752eaf1707aa641045eb96e?includeOutput=true

View: https://api.biosimulations.org/runs/6752eaf1707aa641045eb96e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752eaef9fa297efdca1ab81/download

Logs: https://api.biosimulations.org/logs/6752eaef9fa297efdca1ab81?includeOutput=true

View: https://api.biosimulations.org/runs/6752eaef9fa297efdca1ab81

HTTP response: 201
| +|
[BIOMD0000000386](https://www.ebi.ac.uk/biomodels/BIOMD0000000386)
Arnold2011_Sharkey2007_RuBisCOArnold2011_Sharkey2007_RuBisCO-CalvinCycle
|
pass[BIOMD0000000386_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000386#Files)
|pass|
pass[BIOMD0000000386_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000386#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752eb05c3054f763d551204/download

Logs: https://api.biosimulations.org/logs/6752eb05c3054f763d551204?includeOutput=true

View: https://api.biosimulations.org/runs/6752eb05c3054f763d551204

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752eb02707aa641045eb989/download

Logs: https://api.biosimulations.org/logs/6752eb02707aa641045eb989?includeOutput=true

View: https://api.biosimulations.org/runs/6752eb02707aa641045eb989

HTTP response: 201
| +|
[BIOMD0000000387](https://www.ebi.ac.uk/biomodels/BIOMD0000000387)
Arnold2011_Damour2007_RuBisCO-Arnold2011_Damour2007_RuBisCO-CalvinCycle
|
pass[BIOMD0000000387_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000387#Files)
|pass|
pass[BIOMD0000000387_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000387#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752eb189fa297efdca1abae/download

Logs: https://api.biosimulations.org/logs/6752eb189fa297efdca1abae?includeOutput=true

View: https://api.biosimulations.org/runs/6752eb189fa297efdca1abae

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752eb169fa297efdca1abab/download

Logs: https://api.biosimulations.org/logs/6752eb169fa297efdca1abab?includeOutput=true

View: https://api.biosimulations.org/runs/6752eb169fa297efdca1abab

HTTP response: 201
| +|[BIOMD0000000388](https://www.ebi.ac.uk/biomodels/BIOMD0000000388)
Arnold2011_Zhu2009_CalvinCycle|
pass[BIOMD0000000388_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000388#Files)
|pass|
pass[BIOMD0000000388_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000388#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752eb2c9fa297efdca1abc7/download

Logs: https://api.biosimulations.org/logs/6752eb2c9fa297efdca1abc7?includeOutput=true

View: https://api.biosimulations.org/runs/6752eb2c9fa297efdca1abc7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752eb2ac3054f763d551228/download

Logs: https://api.biosimulations.org/logs/6752eb2ac3054f763d551228?includeOutput=true

View: https://api.biosimulations.org/runs/6752eb2ac3054f763d551228

HTTP response: 201
| +|
[BIOMD0000000389](https://www.ebi.ac.uk/biomodels/BIOMD0000000389)
Arnold2011_Hahn1986_CalvinCyclArnold2011_Hahn1986_CalvinCycle_Starch_Sucrose
|
pass[BIOMD0000000389_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000389#Files)
|pass|
pass[BIOMD0000000389_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000389#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752eb409fa297efdca1abd8/download

Logs: https://api.biosimulations.org/logs/6752eb409fa297efdca1abd8?includeOutput=true

View: https://api.biosimulations.org/runs/6752eb409fa297efdca1abd8

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752eb3e707aa641045eb9c7/download

Logs: https://api.biosimulations.org/logs/6752eb3e707aa641045eb9c7?includeOutput=true

View: https://api.biosimulations.org/runs/6752eb3e707aa641045eb9c7

HTTP response: 201
| +|[BIOMD0000000390](https://www.ebi.ac.uk/biomodels/BIOMD0000000390)
Arnold2011_Giersch1990_CalvinCycle|
pass[BIOMD0000000390_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000390#Files)
|pass|
pass[BIOMD0000000390_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000390#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752eb559fa297efdca1abee/download

Logs: https://api.biosimulations.org/logs/6752eb559fa297efdca1abee?includeOutput=true

View: https://api.biosimulations.org/runs/6752eb559fa297efdca1abee

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752eb53c3054f763d551261/download

Logs: https://api.biosimulations.org/logs/6752eb53c3054f763d551261?includeOutput=true

View: https://api.biosimulations.org/runs/6752eb53c3054f763d551261

HTTP response: 201
| +|
[BIOMD0000000391](https://www.ebi.ac.uk/biomodels/BIOMD0000000391)
Arnold2011_Poolman2000_CalvinCArnold2011_Poolman2000_CalvinCycle_Starch
|
pass[BIOMD0000000391_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000391#Files)
|pass|
pass[BIOMD0000000391_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000391#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752eb6a707aa641045eb9ef/download

Logs: https://api.biosimulations.org/logs/6752eb6a707aa641045eb9ef?includeOutput=true

View: https://api.biosimulations.org/runs/6752eb6a707aa641045eb9ef

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752eb68707aa641045eb9ec/download

Logs: https://api.biosimulations.org/logs/6752eb68707aa641045eb9ec?includeOutput=true

View: https://api.biosimulations.org/runs/6752eb68707aa641045eb9ec

HTTP response: 201
| +|
[BIOMD0000000392](https://www.ebi.ac.uk/biomodels/BIOMD0000000392)
Arnold2011_Laisk2006_CalvinCycArnold2011_Laisk2006_CalvinCycle_Starch_Sucrose
|
pass[BIOMD0000000392_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000392#Files)
|pass|
pass[BIOMD0000000392_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000392#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752eb7f9fa297efdca1ac19/download

Logs: https://api.biosimulations.org/logs/6752eb7f9fa297efdca1ac19?includeOutput=true

View: https://api.biosimulations.org/runs/6752eb7f9fa297efdca1ac19

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752eb7d9fa297efdca1ac15/download

Logs: https://api.biosimulations.org/logs/6752eb7d9fa297efdca1ac15?includeOutput=true

View: https://api.biosimulations.org/runs/6752eb7d9fa297efdca1ac15

HTTP response: 201
| +|
[BIOMD0000000393](https://www.ebi.ac.uk/biomodels/BIOMD0000000393)
Arnold2011_Zhu2007_CalvinCycleArnold2011_Zhu2007_CalvinCycle_Starch_Sucrose_Photorespiration
|
pass[BIOMD0000000393_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000393#Files)
|pass|
pass[BIOMD0000000393_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000393#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752eb96707aa641045eba1b/download

Logs: https://api.biosimulations.org/logs/6752eb96707aa641045eba1b?includeOutput=true

View: https://api.biosimulations.org/runs/6752eb96707aa641045eba1b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752eb939fa297efdca1ac2a/download

Logs: https://api.biosimulations.org/logs/6752eb939fa297efdca1ac2a?includeOutput=true

View: https://api.biosimulations.org/runs/6752eb939fa297efdca1ac2a

HTTP response: 201
| +|
[BIOMD0000000394](https://www.ebi.ac.uk/biomodels/BIOMD0000000394)
Sivakumar2011 - EGF Receptor SSivakumar2011 - EGF Receptor Signaling Pathway
|
pass[BIOMD0000000394_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000394#Files)
|pass|
pass[BIOMD0000000394_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000394#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ebaf9fa297efdca1ac4a/download

Logs: https://api.biosimulations.org/logs/6752ebaf9fa297efdca1ac4a?includeOutput=true

View: https://api.biosimulations.org/runs/6752ebaf9fa297efdca1ac4a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ebac9fa297efdca1ac40/download

Logs: https://api.biosimulations.org/logs/6752ebac9fa297efdca1ac40?includeOutput=true

View: https://api.biosimulations.org/runs/6752ebac9fa297efdca1ac40

HTTP response: 201
| +|
[BIOMD0000000395](https://www.ebi.ac.uk/biomodels/BIOMD0000000395)
Sivakumar2011 - Hedgehog SignaSivakumar2011 - Hedgehog Signaling Pathway
|
pass[BIOMD0000000395_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000395#Files)
|pass|
pass[BIOMD0000000395_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000395#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ebc79fa297efdca1ac67/download

Logs: https://api.biosimulations.org/logs/6752ebc79fa297efdca1ac67?includeOutput=true

View: https://api.biosimulations.org/runs/6752ebc79fa297efdca1ac67

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ebc5c3054f763d5512c2/download

Logs: https://api.biosimulations.org/logs/6752ebc5c3054f763d5512c2?includeOutput=true

View: https://api.biosimulations.org/runs/6752ebc5c3054f763d5512c2

HTTP response: 201
| +|
[BIOMD0000000396](https://www.ebi.ac.uk/biomodels/BIOMD0000000396)
Sivakumar2011 - Notch SignalinSivakumar2011 - Notch Signaling Pathway
|
pass[BIOMD0000000396_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000396#Files)
|pass|
pass[BIOMD0000000396_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000396#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ebdf9fa297efdca1ac84/download

Logs: https://api.biosimulations.org/logs/6752ebdf9fa297efdca1ac84?includeOutput=true

View: https://api.biosimulations.org/runs/6752ebdf9fa297efdca1ac84

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ebdc707aa641045eba54/download

Logs: https://api.biosimulations.org/logs/6752ebdc707aa641045eba54?includeOutput=true

View: https://api.biosimulations.org/runs/6752ebdc707aa641045eba54

HTTP response: 201
| +|[BIOMD0000000397](https://www.ebi.ac.uk/biomodels/BIOMD0000000397)
Sivakumar2011_WntSignalingPathway|
pass[BIOMD0000000397_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000397#Files)
|pass|
pass[BIOMD0000000397_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000397#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ebf4c3054f763d5512e0/download

Logs: https://api.biosimulations.org/logs/6752ebf4c3054f763d5512e0?includeOutput=true

View: https://api.biosimulations.org/runs/6752ebf4c3054f763d5512e0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ebf2c3054f763d5512dd/download

Logs: https://api.biosimulations.org/logs/6752ebf2c3054f763d5512dd?includeOutput=true

View: https://api.biosimulations.org/runs/6752ebf2c3054f763d5512dd

HTTP response: 201
| +|
[BIOMD0000000398](https://www.ebi.ac.uk/biomodels/BIOMD0000000398)
Sivakumar2011_NeuralStemCellDiSivakumar2011_NeuralStemCellDifferentiation_Crosstalk
|
pass[BIOMD0000000398_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000398#Files)
|pass|
pass[BIOMD0000000398_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000398#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ec0b9fa297efdca1acaf/download

Logs: https://api.biosimulations.org/logs/6752ec0b9fa297efdca1acaf?includeOutput=true

View: https://api.biosimulations.org/runs/6752ec0b9fa297efdca1acaf

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ec09707aa641045eba6d/download

Logs: https://api.biosimulations.org/logs/6752ec09707aa641045eba6d?includeOutput=true

View: https://api.biosimulations.org/runs/6752ec09707aa641045eba6d

HTTP response: 201
| +|[BIOMD0000000399](https://www.ebi.ac.uk/biomodels/BIOMD0000000399)
Jenkinson2011_EGF_MAPK|
pass[BIOMD0000000399_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000399#Files)
|pass|
pass[BIOMD0000000399_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000399#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ec20707aa641045eba8d/download

Logs: https://api.biosimulations.org/logs/6752ec20707aa641045eba8d?includeOutput=true

View: https://api.biosimulations.org/runs/6752ec20707aa641045eba8d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ec1e9fa297efdca1acd4/download

Logs: https://api.biosimulations.org/logs/6752ec1e9fa297efdca1acd4?includeOutput=true

View: https://api.biosimulations.org/runs/6752ec1e9fa297efdca1acd4

HTTP response: 201
| +|
[BIOMD0000000400](https://www.ebi.ac.uk/biomodels/BIOMD0000000400)
Cooling2007_IP3transients_CardCooling2007_IP3transients_CardiacMyocyte
|
pass[BIOMD0000000400_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000400#Files)
|pass|
pass[BIOMD0000000400_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000400#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ec389fa297efdca1ace6/download

Logs: https://api.biosimulations.org/logs/6752ec389fa297efdca1ace6?includeOutput=true

View: https://api.biosimulations.org/runs/6752ec389fa297efdca1ace6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ec369fa297efdca1acde/download

Logs: https://api.biosimulations.org/logs/6752ec369fa297efdca1acde?includeOutput=true

View: https://api.biosimulations.org/runs/6752ec369fa297efdca1acde

HTTP response: 201
| +|
[BIOMD0000000401](https://www.ebi.ac.uk/biomodels/BIOMD0000000401)
Ayati2010_BoneRemodelingDynamiAyati2010_BoneRemodelingDynamics_NormalCondition
|
pass[BIOMD0000000401_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000401#Files)
|FAIL|
pass[BIOMD0000000401_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000401#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ec4c707aa641045ebabb/download

Logs: https://api.biosimulations.org/logs/6752ec4c707aa641045ebabb?includeOutput=true

View: https://api.biosimulations.org/runs/6752ec4c707aa641045ebabb

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ec4ac3054f763d551332/download

Logs: https://api.biosimulations.org/logs/6752ec4ac3054f763d551332?includeOutput=true

View: https://api.biosimulations.org/runs/6752ec4ac3054f763d551332

HTTP response: 201
| +|
[BIOMD0000000402](https://www.ebi.ac.uk/biomodels/BIOMD0000000402)
Ayati2010_BoneRemodelingDynamiAyati2010_BoneRemodelingDynamics_WithTumour
|
pass[BIOMD0000000402_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000402#Files)
|FAIL|
pass[BIOMD0000000402_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000402#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ec5f707aa641045ebace/download

Logs: https://api.biosimulations.org/logs/6752ec5f707aa641045ebace?includeOutput=true

View: https://api.biosimulations.org/runs/6752ec5f707aa641045ebace

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ec5d707aa641045ebac8/download

Logs: https://api.biosimulations.org/logs/6752ec5d707aa641045ebac8?includeOutput=true

View: https://api.biosimulations.org/runs/6752ec5d707aa641045ebac8

HTTP response: 201
| +|
[BIOMD0000000403](https://www.ebi.ac.uk/biomodels/BIOMD0000000403)
Ayati2010_BoneRemodelingDynamiAyati2010_BoneRemodelingDynamics_WithTumour+DrugTreatment
|
pass[BIOMD0000000403_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000403#Files)
|FAIL|
pass[BIOMD0000000403_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000403#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ec709fa297efdca1ad2c/download

Logs: https://api.biosimulations.org/logs/6752ec709fa297efdca1ad2c?includeOutput=true

View: https://api.biosimulations.org/runs/6752ec709fa297efdca1ad2c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ec6e707aa641045ebad6/download

Logs: https://api.biosimulations.org/logs/6752ec6e707aa641045ebad6?includeOutput=true

View: https://api.biosimulations.org/runs/6752ec6e707aa641045ebad6

HTTP response: 201
| +|[BIOMD0000000404](https://www.ebi.ac.uk/biomodels/BIOMD0000000404)
Bray1993_chemotaxis|
pass[BIOMD0000000404_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000404#Files)
|pass|
pass[BIOMD0000000404_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000404#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ec859fa297efdca1ad50/download

Logs: https://api.biosimulations.org/logs/6752ec859fa297efdca1ad50?includeOutput=true

View: https://api.biosimulations.org/runs/6752ec859fa297efdca1ad50

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ec82c3054f763d55135f/download

Logs: https://api.biosimulations.org/logs/6752ec82c3054f763d55135f?includeOutput=true

View: https://api.biosimulations.org/runs/6752ec82c3054f763d55135f

HTTP response: 201
| +|
[BIOMD0000000405](https://www.ebi.ac.uk/biomodels/BIOMD0000000405)
Cookson2011_EnzymaticQueueingCCookson2011_EnzymaticQueueingCoupling
|
pass[BIOMD0000000405_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000405#Files)
|pass|
pass[BIOMD0000000405_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000405#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ec9a707aa641045ebb16/download

Logs: https://api.biosimulations.org/logs/6752ec9a707aa641045ebb16?includeOutput=true

View: https://api.biosimulations.org/runs/6752ec9a707aa641045ebb16

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ec99707aa641045ebb13/download

Logs: https://api.biosimulations.org/logs/6752ec99707aa641045ebb13?includeOutput=true

View: https://api.biosimulations.org/runs/6752ec99707aa641045ebb13

HTTP response: 201
| +|[BIOMD0000000406](https://www.ebi.ac.uk/biomodels/BIOMD0000000406)
Moriya2011_CellCycle_FissionYeast|
pass[BIOMD0000000406_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000406#Files)
|FAIL|
pass[BIOMD0000000406_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000406#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ecb0707aa641045ebb3b/download

Logs: https://api.biosimulations.org/logs/6752ecb0707aa641045ebb3b?includeOutput=true

View: https://api.biosimulations.org/runs/6752ecb0707aa641045ebb3b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ecad707aa641045ebb38/download

Logs: https://api.biosimulations.org/logs/6752ecad707aa641045ebb38?includeOutput=true

View: https://api.biosimulations.org/runs/6752ecad707aa641045ebb38

HTTP response: 201
| +|[BIOMD0000000407](https://www.ebi.ac.uk/biomodels/BIOMD0000000407)
Schliemann2011_TNF_ProAntiApoptosis|
pass[BIOMD0000000407_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000407#Files)
|FAIL|
pass[BIOMD0000000407_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000407#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752eccac3054f763d5513a2/download

Logs: https://api.biosimulations.org/logs/6752eccac3054f763d5513a2?includeOutput=true

View: https://api.biosimulations.org/runs/6752eccac3054f763d5513a2

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ecc89fa297efdca1ad80/download

Logs: https://api.biosimulations.org/logs/6752ecc89fa297efdca1ad80?includeOutput=true

View: https://api.biosimulations.org/runs/6752ecc89fa297efdca1ad80

HTTP response: 201
| +|[BIOMD0000000408](https://www.ebi.ac.uk/biomodels/BIOMD0000000408)
Hettling2011_CreatineKinase|
pass[BIOMD0000000408_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000408#Files)
|FAIL|
pass[BIOMD0000000408_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000408#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ece2707aa641045ebb63/download

Logs: https://api.biosimulations.org/logs/6752ece2707aa641045ebb63?includeOutput=true

View: https://api.biosimulations.org/runs/6752ece2707aa641045ebb63

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ece09fa297efdca1ad8d/download

Logs: https://api.biosimulations.org/logs/6752ece09fa297efdca1ad8d?includeOutput=true

View: https://api.biosimulations.org/runs/6752ece09fa297efdca1ad8d

HTTP response: 201
| +|
[BIOMD0000000409](https://www.ebi.ac.uk/biomodels/BIOMD0000000409)
Queralt2006_MitoticExit_Cdc55DQueralt2006_MitoticExit_Cdc55DownregulationBySeparase
|
pass[BIOMD0000000409_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000409#Files)
|pass|
pass[BIOMD0000000409_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000409#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ecf79fa297efdca1adb3/download

Logs: https://api.biosimulations.org/logs/6752ecf79fa297efdca1adb3?includeOutput=true

View: https://api.biosimulations.org/runs/6752ecf79fa297efdca1adb3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ecf59fa297efdca1adb0/download

Logs: https://api.biosimulations.org/logs/6752ecf59fa297efdca1adb0?includeOutput=true

View: https://api.biosimulations.org/runs/6752ecf59fa297efdca1adb0

HTTP response: 201
| +|
[BIOMD0000000410](https://www.ebi.ac.uk/biomodels/BIOMD0000000410)
Wegner2012_TGFbetaSignalling_FWegner2012_TGFbetaSignalling_FeedbackLoops
|
pass[BIOMD0000000410_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000410#Files)
|pass|
pass[BIOMD0000000410_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000410#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ed0e707aa641045ebbb5/download

Logs: https://api.biosimulations.org/logs/6752ed0e707aa641045ebbb5?includeOutput=true

View: https://api.biosimulations.org/runs/6752ed0e707aa641045ebbb5

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ed0c707aa641045ebbb2/download

Logs: https://api.biosimulations.org/logs/6752ed0c707aa641045ebbb2?includeOutput=true

View: https://api.biosimulations.org/runs/6752ed0c707aa641045ebbb2

HTTP response: 201
| +|
[BIOMD0000000411](https://www.ebi.ac.uk/biomodels/BIOMD0000000411)
Heiland2012_CircadianClock_C.rHeiland2012_CircadianClock_C.reinhardtii
|
pass[BIOMD0000000411_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000411#Files)
|pass|
pass[BIOMD0000000411_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000411#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ed259fa297efdca1adcc/download

Logs: https://api.biosimulations.org/logs/6752ed259fa297efdca1adcc?includeOutput=true

View: https://api.biosimulations.org/runs/6752ed259fa297efdca1adcc

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ed23c3054f763d5513d8/download

Logs: https://api.biosimulations.org/logs/6752ed23c3054f763d5513d8?includeOutput=true

View: https://api.biosimulations.org/runs/6752ed23c3054f763d5513d8

HTTP response: 201
| +|
[BIOMD0000000412](https://www.ebi.ac.uk/biomodels/BIOMD0000000412)
Pokhilko2012_CircClock_RepressPokhilko2012_CircClock_RepressilatorFeedbackloop
|
pass[BIOMD0000000412_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000412#Files)
|pass|
pass[BIOMD0000000412_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000412#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ed3b707aa641045ebbdf/download

Logs: https://api.biosimulations.org/logs/6752ed3b707aa641045ebbdf?includeOutput=true

View: https://api.biosimulations.org/runs/6752ed3b707aa641045ebbdf

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ed399fa297efdca1ade8/download

Logs: https://api.biosimulations.org/logs/6752ed399fa297efdca1ade8?includeOutput=true

View: https://api.biosimulations.org/runs/6752ed399fa297efdca1ade8

HTTP response: 201
| +|[BIOMD0000000413](https://www.ebi.ac.uk/biomodels/BIOMD0000000413)
Band2012_DII-Venus_FullModel|
pass[BIOMD0000000413_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000413#Files)
|pass|
pass[BIOMD0000000413_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000413#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ed569fa297efdca1adfb/download

Logs: https://api.biosimulations.org/logs/6752ed569fa297efdca1adfb?includeOutput=true

View: https://api.biosimulations.org/runs/6752ed569fa297efdca1adfb

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ed54c3054f763d55140b/download

Logs: https://api.biosimulations.org/logs/6752ed54c3054f763d55140b?includeOutput=true

View: https://api.biosimulations.org/runs/6752ed54c3054f763d55140b

HTTP response: 201
| +|[BIOMD0000000414](https://www.ebi.ac.uk/biomodels/BIOMD0000000414)
Band2012_DII-Venus_ReducedModel|
pass[BIOMD0000000414_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000414#Files)
|pass|
pass[BIOMD0000000414_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000414#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ed6b707aa641045ebc09/download

Logs: https://api.biosimulations.org/logs/6752ed6b707aa641045ebc09?includeOutput=true

View: https://api.biosimulations.org/runs/6752ed6b707aa641045ebc09

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ed689fa297efdca1ae16/download

Logs: https://api.biosimulations.org/logs/6752ed689fa297efdca1ae16?includeOutput=true

View: https://api.biosimulations.org/runs/6752ed689fa297efdca1ae16

HTTP response: 201
| +|[BIOMD0000000415](https://www.ebi.ac.uk/biomodels/BIOMD0000000415)
Mellor2012_LipooxygenasePathway|
pass[BIOMD0000000415_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000415#Files)
|pass|
pass[BIOMD0000000415_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000415#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ed7f707aa641045ebc1c/download

Logs: https://api.biosimulations.org/logs/6752ed7f707aa641045ebc1c?includeOutput=true

View: https://api.biosimulations.org/runs/6752ed7f707aa641045ebc1c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ed7d9fa297efdca1ae23/download

Logs: https://api.biosimulations.org/logs/6752ed7d9fa297efdca1ae23?includeOutput=true

View: https://api.biosimulations.org/runs/6752ed7d9fa297efdca1ae23

HTTP response: 201
| +|
[BIOMD0000000416](https://www.ebi.ac.uk/biomodels/BIOMD0000000416)
Muraro2011_Cytokinin-Auxin_CroMuraro2011_Cytokinin-Auxin_CrossRegulation
|
pass[BIOMD0000000416_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000416#Files)
|FAIL|
pass[BIOMD0000000416_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000416#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ed94c3054f763d55144a/download

Logs: https://api.biosimulations.org/logs/6752ed94c3054f763d55144a?includeOutput=true

View: https://api.biosimulations.org/runs/6752ed94c3054f763d55144a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ed92707aa641045ebc32/download

Logs: https://api.biosimulations.org/logs/6752ed92707aa641045ebc32?includeOutput=true

View: https://api.biosimulations.org/runs/6752ed92707aa641045ebc32

HTTP response: 201
| +|[BIOMD0000000418](https://www.ebi.ac.uk/biomodels/BIOMD0000000418)
Ratushny2012_SPF|
pass[BIOMD0000000418_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000418#Files)
|pass|
pass[BIOMD0000000418_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000418#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752eda9707aa641045ebc42/download

Logs: https://api.biosimulations.org/logs/6752eda9707aa641045ebc42?includeOutput=true

View: https://api.biosimulations.org/runs/6752eda9707aa641045ebc42

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752eda7707aa641045ebc3e/download

Logs: https://api.biosimulations.org/logs/6752eda7707aa641045ebc3e?includeOutput=true

View: https://api.biosimulations.org/runs/6752eda7707aa641045ebc3e

HTTP response: 201
| +|[BIOMD0000000420](https://www.ebi.ac.uk/biomodels/BIOMD0000000420)
Ratushny2012_ASSURE_I|
pass[BIOMD0000000420_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000420#Files)
|pass|
pass[BIOMD0000000420_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000420#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752edbd9fa297efdca1ae55/download

Logs: https://api.biosimulations.org/logs/6752edbd9fa297efdca1ae55?includeOutput=true

View: https://api.biosimulations.org/runs/6752edbd9fa297efdca1ae55

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752edbb9fa297efdca1ae52/download

Logs: https://api.biosimulations.org/logs/6752edbb9fa297efdca1ae52?includeOutput=true

View: https://api.biosimulations.org/runs/6752edbb9fa297efdca1ae52

HTTP response: 201
| +|[BIOMD0000000421](https://www.ebi.ac.uk/biomodels/BIOMD0000000421)
Ratushny2012_ASSURE_II|
pass[BIOMD0000000421_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000421#Files)
|pass|
pass[BIOMD0000000421_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000421#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752edd0c3054f763d551481/download

Logs: https://api.biosimulations.org/logs/6752edd0c3054f763d551481?includeOutput=true

View: https://api.biosimulations.org/runs/6752edd0c3054f763d551481

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752edce707aa641045ebc79/download

Logs: https://api.biosimulations.org/logs/6752edce707aa641045ebc79?includeOutput=true

View: https://api.biosimulations.org/runs/6752edce707aa641045ebc79

HTTP response: 201
| +|[BIOMD0000000422](https://www.ebi.ac.uk/biomodels/BIOMD0000000422)
Middleton2012_GibberellinSignalling|
pass[BIOMD0000000422_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000422#Files)
|FAIL|
pass[BIOMD0000000422_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000422#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752ede4707aa641045ebc90/download

Logs: https://api.biosimulations.org/logs/6752ede4707aa641045ebc90?includeOutput=true

View: https://api.biosimulations.org/runs/6752ede4707aa641045ebc90

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752ede29fa297efdca1ae82/download

Logs: https://api.biosimulations.org/logs/6752ede29fa297efdca1ae82?includeOutput=true

View: https://api.biosimulations.org/runs/6752ede29fa297efdca1ae82

HTTP response: 201
| +|[BIOMD0000000423](https://www.ebi.ac.uk/biomodels/BIOMD0000000423)
Nyman2012_InsulinSignalling|
pass[BIOMD0000000423_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000423#Files)
|pass|
pass[BIOMD0000000423_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000423#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6752edf99fa297efdca1aea0/download

Logs: https://api.biosimulations.org/logs/6752edf99fa297efdca1aea0?includeOutput=true

View: https://api.biosimulations.org/runs/6752edf99fa297efdca1aea0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6752edf7707aa641045ebc9d/download

Logs: https://api.biosimulations.org/logs/6752edf7707aa641045ebc9d?includeOutput=true

View: https://api.biosimulations.org/runs/6752edf7707aa641045ebc9d

HTTP response: 201
| +|
[BIOMD0000000424](https://www.ebi.ac.uk/biomodels/BIOMD0000000424)
Faratian2009 - Role of PTEN inFaratian2009 - Role of PTEN in Trastuzumab resistance
|
pass[BIOMD0000000424_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000424#Files)
|pass|
pass[BIOMD0000000424_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000424#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531a97707aa641045ebdf6/download

Logs: https://api.biosimulations.org/logs/67531a97707aa641045ebdf6?includeOutput=true

View: https://api.biosimulations.org/runs/67531a97707aa641045ebdf6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531a949fa297efdca1b07f/download

Logs: https://api.biosimulations.org/logs/67531a949fa297efdca1b07f?includeOutput=true

View: https://api.biosimulations.org/runs/67531a949fa297efdca1b07f

HTTP response: 201
| +|
[BIOMD0000000425](https://www.ebi.ac.uk/biomodels/BIOMD0000000425)
Tan2012 - Antibiotic TreatmentTan2012 - Antibiotic Treatment, Inoculum Effect
|
pass[BIOMD0000000425_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000425#Files)
|FAIL|
pass[BIOMD0000000425_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000425#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531ab2707aa641045ebe0c/download

Logs: https://api.biosimulations.org/logs/67531ab2707aa641045ebe0c?includeOutput=true

View: https://api.biosimulations.org/runs/67531ab2707aa641045ebe0c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531ab0c3054f763d55166f/download

Logs: https://api.biosimulations.org/logs/67531ab0c3054f763d55166f?includeOutput=true

View: https://api.biosimulations.org/runs/67531ab0c3054f763d55166f

HTTP response: 201
| +|
[BIOMD0000000426](https://www.ebi.ac.uk/biomodels/BIOMD0000000426)
Mosca2012 - Central Carbon MetMosca2012 - Central Carbon Metabolism Regulated by AKT
|
pass[BIOMD0000000426_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000426#Files)
|FAIL|
pass[BIOMD0000000426_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000426#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531ac69fa297efdca1b0c3/download

Logs: https://api.biosimulations.org/logs/67531ac69fa297efdca1b0c3?includeOutput=true

View: https://api.biosimulations.org/runs/67531ac69fa297efdca1b0c3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531ac4c3054f763d55167e/download

Logs: https://api.biosimulations.org/logs/67531ac4c3054f763d55167e?includeOutput=true

View: https://api.biosimulations.org/runs/67531ac4c3054f763d55167e

HTTP response: 201
| +|
[BIOMD0000000427](https://www.ebi.ac.uk/biomodels/BIOMD0000000427)
Bianconi2012 - EGFR and IGF1R Bianconi2012 - EGFR and IGF1R pathway in lung cancer
|
pass[BIOMD0000000427_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000427#Files)
|pass|
pass[BIOMD0000000427_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000427#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531add707aa641045ebe2f/download

Logs: https://api.biosimulations.org/logs/67531add707aa641045ebe2f?includeOutput=true

View: https://api.biosimulations.org/runs/67531add707aa641045ebe2f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531adac3054f763d5516ab/download

Logs: https://api.biosimulations.org/logs/67531adac3054f763d5516ab?includeOutput=true

View: https://api.biosimulations.org/runs/67531adac3054f763d5516ab

HTTP response: 201
| +|
[BIOMD0000000428](https://www.ebi.ac.uk/biomodels/BIOMD0000000428)
Achcar2012 - Glycolysis in bloAchcar2012 - Glycolysis in bloodstream form T. brucei
|
pass[BIOMD0000000428_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000428#Files)
|pass|
pass[BIOMD0000000428_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000428#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531af0707aa641045ebe4f/download

Logs: https://api.biosimulations.org/logs/67531af0707aa641045ebe4f?includeOutput=true

View: https://api.biosimulations.org/runs/67531af0707aa641045ebe4f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531aee9fa297efdca1b0df/download

Logs: https://api.biosimulations.org/logs/67531aee9fa297efdca1b0df?includeOutput=true

View: https://api.biosimulations.org/runs/67531aee9fa297efdca1b0df

HTTP response: 201
| +|[BIOMD0000000429](https://www.ebi.ac.uk/biomodels/BIOMD0000000429)
Schaber2012 - Hog pathway in yeast|
pass[BIOMD0000000429_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000429#Files)
|FAIL|
pass[BIOMD0000000429_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000429#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531b08c3054f763d5516ce/download

Logs: https://api.biosimulations.org/logs/67531b08c3054f763d5516ce?includeOutput=true

View: https://api.biosimulations.org/runs/67531b08c3054f763d5516ce

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531b069fa297efdca1b0fb/download

Logs: https://api.biosimulations.org/logs/67531b069fa297efdca1b0fb?includeOutput=true

View: https://api.biosimulations.org/runs/67531b069fa297efdca1b0fb

HTTP response: 201
| +|
[BIOMD0000000430](https://www.ebi.ac.uk/biomodels/BIOMD0000000430)
Sarma2012 - Interaction topoloSarma2012 - Interaction topologies of MAPK cascade (M4_K2_USEQ)
|
pass[BIOMD0000000430_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000430#Files)
|pass|
pass[BIOMD0000000430_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000430#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531b1e707aa641045ebe6d/download

Logs: https://api.biosimulations.org/logs/67531b1e707aa641045ebe6d?includeOutput=true

View: https://api.biosimulations.org/runs/67531b1e707aa641045ebe6d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531b1c9fa297efdca1b111/download

Logs: https://api.biosimulations.org/logs/67531b1c9fa297efdca1b111?includeOutput=true

View: https://api.biosimulations.org/runs/67531b1c9fa297efdca1b111

HTTP response: 201
| +|
[BIOMD0000000431](https://www.ebi.ac.uk/biomodels/BIOMD0000000431)
Sarma2012 - Interaction topoloSarma2012 - Interaction topologies of MAPK cascade (M4_K2_PSEQ)
|
pass[BIOMD0000000431_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000431#Files)
|pass|
pass[BIOMD0000000431_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000431#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531b349fa297efdca1b124/download

Logs: https://api.biosimulations.org/logs/67531b349fa297efdca1b124?includeOutput=true

View: https://api.biosimulations.org/runs/67531b349fa297efdca1b124

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531b329fa297efdca1b121/download

Logs: https://api.biosimulations.org/logs/67531b329fa297efdca1b121?includeOutput=true

View: https://api.biosimulations.org/runs/67531b329fa297efdca1b121

HTTP response: 201
| +|
[BIOMD0000000432](https://www.ebi.ac.uk/biomodels/BIOMD0000000432)
Sarma2012 - Interaction topoloSarma2012 - Interaction topologies of MAPK cascade (M4_K2_QSS_USEQ)
|
pass[BIOMD0000000432_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000432#Files)
|pass|
pass[BIOMD0000000432_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000432#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531b4c9fa297efdca1b143/download

Logs: https://api.biosimulations.org/logs/67531b4c9fa297efdca1b143?includeOutput=true

View: https://api.biosimulations.org/runs/67531b4c9fa297efdca1b143

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531b499fa297efdca1b13b/download

Logs: https://api.biosimulations.org/logs/67531b499fa297efdca1b13b?includeOutput=true

View: https://api.biosimulations.org/runs/67531b499fa297efdca1b13b

HTTP response: 201
| +|
[BIOMD0000000433](https://www.ebi.ac.uk/biomodels/BIOMD0000000433)
Sarma2012 - Interaction topoloSarma2012 - Interaction topologies of MAPK cascade (M4_K2_QSS_PSEQ)
|
pass[BIOMD0000000433_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000433#Files)
|pass|
pass[BIOMD0000000433_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000433#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531b5e707aa641045ebec2/download

Logs: https://api.biosimulations.org/logs/67531b5e707aa641045ebec2?includeOutput=true

View: https://api.biosimulations.org/runs/67531b5e707aa641045ebec2

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531b5cc3054f763d551719/download

Logs: https://api.biosimulations.org/logs/67531b5cc3054f763d551719?includeOutput=true

View: https://api.biosimulations.org/runs/67531b5cc3054f763d551719

HTTP response: 201
| +|
[BIOMD0000000434](https://www.ebi.ac.uk/biomodels/BIOMD0000000434)
McAuley2012 - Whole-body CholeMcAuley2012 - Whole-body Cholesterol Metabolism
|
pass[BIOMD0000000434_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000434#Files)
|pass|
pass[BIOMD0000000434_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000434#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531b749fa297efdca1b173/download

Logs: https://api.biosimulations.org/logs/67531b749fa297efdca1b173?includeOutput=true

View: https://api.biosimulations.org/runs/67531b749fa297efdca1b173

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531b72707aa641045ebedc/download

Logs: https://api.biosimulations.org/logs/67531b72707aa641045ebedc?includeOutput=true

View: https://api.biosimulations.org/runs/67531b72707aa641045ebedc

HTTP response: 201
| +|
[BIOMD0000000435](https://www.ebi.ac.uk/biomodels/BIOMD0000000435)
deBack2012 - Lineage SpecificadeBack2012 - Lineage Specification in Pancreas Development
|
pass[BIOMD0000000435_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000435#Files)
|pass|
pass[BIOMD0000000435_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000435#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531b89707aa641045ebeeb/download

Logs: https://api.biosimulations.org/logs/67531b89707aa641045ebeeb?includeOutput=true

View: https://api.biosimulations.org/runs/67531b89707aa641045ebeeb

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531b87c3054f763d551747/download

Logs: https://api.biosimulations.org/logs/67531b87c3054f763d551747?includeOutput=true

View: https://api.biosimulations.org/runs/67531b87c3054f763d551747

HTTP response: 201
| +|[BIOMD0000000436](https://www.ebi.ac.uk/biomodels/BIOMD0000000436)
Gupta2009 - Eicosanoid Metabolism|
pass[BIOMD0000000436_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000436#Files)
|FAIL|
pass[BIOMD0000000436_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000436#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531b9cc3054f763d55175f/download

Logs: https://api.biosimulations.org/logs/67531b9cc3054f763d55175f?includeOutput=true

View: https://api.biosimulations.org/runs/67531b9cc3054f763d55175f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531b99c3054f763d551757/download

Logs: https://api.biosimulations.org/logs/67531b99c3054f763d551757?includeOutput=true

View: https://api.biosimulations.org/runs/67531b99c3054f763d551757

HTTP response: 201
| +|
[BIOMD0000000437](https://www.ebi.ac.uk/biomodels/BIOMD0000000437)
Tseng2012 - Circadian clock ofTseng2012 - Circadian clock of N.crassa
|
pass[BIOMD0000000437_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000437#Files)
|FAIL|
pass[BIOMD0000000437_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000437#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531bb2707aa641045ebf07/download

Logs: https://api.biosimulations.org/logs/67531bb2707aa641045ebf07?includeOutput=true

View: https://api.biosimulations.org/runs/67531bb2707aa641045ebf07

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531bb09fa297efdca1b1b4/download

Logs: https://api.biosimulations.org/logs/67531bb09fa297efdca1b1b4?includeOutput=true

View: https://api.biosimulations.org/runs/67531bb09fa297efdca1b1b4

HTTP response: 201
| +|
[BIOMD0000000438](https://www.ebi.ac.uk/biomodels/BIOMD0000000438)
Saeidi2012 - Quorum sensing deSaeidi2012 - Quorum sensing device that produces GFP
|
pass[BIOMD0000000438_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000438#Files)
|FAIL|
pass[BIOMD0000000438_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000438#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531bca9fa297efdca1b1c6/download

Logs: https://api.biosimulations.org/logs/67531bca9fa297efdca1b1c6?includeOutput=true

View: https://api.biosimulations.org/runs/67531bca9fa297efdca1b1c6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531bc89fa297efdca1b1c1/download

Logs: https://api.biosimulations.org/logs/67531bc89fa297efdca1b1c1?includeOutput=true

View: https://api.biosimulations.org/runs/67531bc89fa297efdca1b1c1

HTTP response: 201
| +|
[BIOMD0000000439](https://www.ebi.ac.uk/biomodels/BIOMD0000000439)
Smith2009 - RGS mediated GTP hSmith2009 - RGS mediated GTP hydrolysis
|
pass[BIOMD0000000439_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000439#Files)
|FAIL|
pass[BIOMD0000000439_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000439#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531bdec3054f763d551799/download

Logs: https://api.biosimulations.org/logs/67531bdec3054f763d551799?includeOutput=true

View: https://api.biosimulations.org/runs/67531bdec3054f763d551799

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531bdc707aa641045ebf38/download

Logs: https://api.biosimulations.org/logs/67531bdc707aa641045ebf38?includeOutput=true

View: https://api.biosimulations.org/runs/67531bdc707aa641045ebf38

HTTP response: 201
| +|
[BIOMD0000000440](https://www.ebi.ac.uk/biomodels/BIOMD0000000440)
Sarma2012 - Oscillations in MASarma2012 - Oscillations in MAPK cascade (S1)
|
pass[BIOMD0000000440_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000440#Files)
|pass|
pass[BIOMD0000000440_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000440#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531bf4c3054f763d5517af/download

Logs: https://api.biosimulations.org/logs/67531bf4c3054f763d5517af?includeOutput=true

View: https://api.biosimulations.org/runs/67531bf4c3054f763d5517af

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531bf19fa297efdca1b1fa/download

Logs: https://api.biosimulations.org/logs/67531bf19fa297efdca1b1fa?includeOutput=true

View: https://api.biosimulations.org/runs/67531bf19fa297efdca1b1fa

HTTP response: 201
| +|
[BIOMD0000000441](https://www.ebi.ac.uk/biomodels/BIOMD0000000441)
Sarma2012 - Oscillations in MASarma2012 - Oscillations in MAPK cascade (S2)
|
pass[BIOMD0000000441_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000441#Files)
|pass|
pass[BIOMD0000000441_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000441#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531c07707aa641045ebf66/download

Logs: https://api.biosimulations.org/logs/67531c07707aa641045ebf66?includeOutput=true

View: https://api.biosimulations.org/runs/67531c07707aa641045ebf66

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531c049fa297efdca1b206/download

Logs: https://api.biosimulations.org/logs/67531c049fa297efdca1b206?includeOutput=true

View: https://api.biosimulations.org/runs/67531c049fa297efdca1b206

HTTP response: 201
| +|
[BIOMD0000000442](https://www.ebi.ac.uk/biomodels/BIOMD0000000442)
Sarma2012 - Oscillations in MASarma2012 - Oscillations in MAPK cascade (S2), inclusion of external signalling module
|
pass[BIOMD0000000442_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000442#Files)
|pass|
pass[BIOMD0000000442_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000442#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531c1bc3054f763d5517d7/download

Logs: https://api.biosimulations.org/logs/67531c1bc3054f763d5517d7?includeOutput=true

View: https://api.biosimulations.org/runs/67531c1bc3054f763d5517d7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531c19c3054f763d5517d4/download

Logs: https://api.biosimulations.org/logs/67531c19c3054f763d5517d4?includeOutput=true

View: https://api.biosimulations.org/runs/67531c19c3054f763d5517d4

HTTP response: 201
| +|
[BIOMD0000000443](https://www.ebi.ac.uk/biomodels/BIOMD0000000443)
Sarma2012 - Oscillations in MASarma2012 - Oscillations in MAPK cascade (S1n)
|
pass[BIOMD0000000443_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000443#Files)
|FAIL|
pass[BIOMD0000000443_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000443#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531c30c3054f763d5517ea/download

Logs: https://api.biosimulations.org/logs/67531c30c3054f763d5517ea?includeOutput=true

View: https://api.biosimulations.org/runs/67531c30c3054f763d5517ea

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531c2ec3054f763d5517e7/download

Logs: https://api.biosimulations.org/logs/67531c2ec3054f763d5517e7?includeOutput=true

View: https://api.biosimulations.org/runs/67531c2ec3054f763d5517e7

HTTP response: 201
| +|
[BIOMD0000000444](https://www.ebi.ac.uk/biomodels/BIOMD0000000444)
Sarma2012 - Oscillations in MASarma2012 - Oscillations in MAPK cascade (S2n)
|
pass[BIOMD0000000444_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000444#Files)
|FAIL|
pass[BIOMD0000000444_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000444#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531c45707aa641045ebf9f/download

Logs: https://api.biosimulations.org/logs/67531c45707aa641045ebf9f?includeOutput=true

View: https://api.biosimulations.org/runs/67531c45707aa641045ebf9f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531c439fa297efdca1b255/download

Logs: https://api.biosimulations.org/logs/67531c439fa297efdca1b255?includeOutput=true

View: https://api.biosimulations.org/runs/67531c439fa297efdca1b255

HTTP response: 201
| +|
[BIOMD0000000445](https://www.ebi.ac.uk/biomodels/BIOMD0000000445)
Pokhilko2013 - TOC1 signallingPokhilko2013 - TOC1 signalling in Arabidopsis circadian clock
|
pass[BIOMD0000000445_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000445#Files)
|pass|
pass[BIOMD0000000445_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000445#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531c59707aa641045ebfc1/download

Logs: https://api.biosimulations.org/logs/67531c59707aa641045ebfc1?includeOutput=true

View: https://api.biosimulations.org/runs/67531c59707aa641045ebfc1

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531c569fa297efdca1b261/download

Logs: https://api.biosimulations.org/logs/67531c569fa297efdca1b261?includeOutput=true

View: https://api.biosimulations.org/runs/67531c569fa297efdca1b261

HTTP response: 201
| +|
[BIOMD0000000446](https://www.ebi.ac.uk/biomodels/BIOMD0000000446)
Erguler2013 - Unfolded proteinErguler2013 - Unfolded protein stress response
|
pass[BIOMD0000000446_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000446#Files)
|pass|
pass[BIOMD0000000446_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000446#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531c729fa297efdca1b27b/download

Logs: https://api.biosimulations.org/logs/67531c729fa297efdca1b27b?includeOutput=true

View: https://api.biosimulations.org/runs/67531c729fa297efdca1b27b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531c70c3054f763d551823/download

Logs: https://api.biosimulations.org/logs/67531c70c3054f763d551823?includeOutput=true

View: https://api.biosimulations.org/runs/67531c70c3054f763d551823

HTTP response: 201
| +|
[BIOMD0000000447](https://www.ebi.ac.uk/biomodels/BIOMD0000000447)
Venkatraman2012 - Interplay beVenkatraman2012 - Interplay between PLS and TSP1 in TGF-β1 activation
|
pass[BIOMD0000000447_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000447#Files)
|pass|
pass[BIOMD0000000447_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000447#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531c8bc3054f763d551850/download

Logs: https://api.biosimulations.org/logs/67531c8bc3054f763d551850?includeOutput=true

View: https://api.biosimulations.org/runs/67531c8bc3054f763d551850

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531c89707aa641045ec000/download

Logs: https://api.biosimulations.org/logs/67531c89707aa641045ec000?includeOutput=true

View: https://api.biosimulations.org/runs/67531c89707aa641045ec000

HTTP response: 201
| +|
[BIOMD0000000448](https://www.ebi.ac.uk/biomodels/BIOMD0000000448)
Brännmark2013 - Insulin signalBrännmark2013 - Insulin signalling in human adipocytes (normal condition)
|
pass[BIOMD0000000448_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000448#Files)
|FAIL|
pass[BIOMD0000000448_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000448#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531ca1c3054f763d55185f/download

Logs: https://api.biosimulations.org/logs/67531ca1c3054f763d55185f?includeOutput=true

View: https://api.biosimulations.org/runs/67531ca1c3054f763d55185f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531c9e707aa641045ec026/download

Logs: https://api.biosimulations.org/logs/67531c9e707aa641045ec026?includeOutput=true

View: https://api.biosimulations.org/runs/67531c9e707aa641045ec026

HTTP response: 201
| +|
[BIOMD0000000449](https://www.ebi.ac.uk/biomodels/BIOMD0000000449)
Brännmark2013 - Insulin signalBrännmark2013 - Insulin signalling in human adipocytes (diabetic condition)
|
pass[BIOMD0000000449_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000449#Files)
|FAIL|
pass[BIOMD0000000449_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000449#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531cb79fa297efdca1b2d3/download

Logs: https://api.biosimulations.org/logs/67531cb79fa297efdca1b2d3?includeOutput=true

View: https://api.biosimulations.org/runs/67531cb79fa297efdca1b2d3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531cb59fa297efdca1b2d0/download

Logs: https://api.biosimulations.org/logs/67531cb59fa297efdca1b2d0?includeOutput=true

View: https://api.biosimulations.org/runs/67531cb59fa297efdca1b2d0

HTTP response: 201
| +|
[BIOMD0000000450](https://www.ebi.ac.uk/biomodels/BIOMD0000000450)
Reyes-Palomares2012 - a combiReyes-Palomares2012 - a combined model hepatic polyamine and sulfur aminoacid metabolism - version2
|
pass[BIOMD0000000450_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000450#Files)
|FAIL|
pass[BIOMD0000000450_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000450#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531ccf9fa297efdca1b2e9/download

Logs: https://api.biosimulations.org/logs/67531ccf9fa297efdca1b2e9?includeOutput=true

View: https://api.biosimulations.org/runs/67531ccf9fa297efdca1b2e9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531ccc707aa641045ec04a/download

Logs: https://api.biosimulations.org/logs/67531ccc707aa641045ec04a?includeOutput=true

View: https://api.biosimulations.org/runs/67531ccc707aa641045ec04a

HTTP response: 201
| +|
[BIOMD0000000451](https://www.ebi.ac.uk/biomodels/BIOMD0000000451)
Carbo2013 - Cytokine driven CDCarbo2013 - Cytokine driven CD4+ T Cell differentiation and phenotype plasticity
|
pass[BIOMD0000000451_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000451#Files)
|FAIL|
pass[BIOMD0000000451_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000451#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531cebc3054f763d551895/download

Logs: https://api.biosimulations.org/logs/67531cebc3054f763d551895?includeOutput=true

View: https://api.biosimulations.org/runs/67531cebc3054f763d551895

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531ce99fa297efdca1b304/download

Logs: https://api.biosimulations.org/logs/67531ce99fa297efdca1b304?includeOutput=true

View: https://api.biosimulations.org/runs/67531ce99fa297efdca1b304

HTTP response: 201
| +|
[BIOMD0000000452](https://www.ebi.ac.uk/biomodels/BIOMD0000000452)
Bidkhori2012 - normal EGFR sigBidkhori2012 - normal EGFR signalling
|
pass[BIOMD0000000452_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000452#Files)
|pass|
pass[BIOMD0000000452_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000452#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531d039fa297efdca1b322/download

Logs: https://api.biosimulations.org/logs/67531d039fa297efdca1b322?includeOutput=true

View: https://api.biosimulations.org/runs/67531d039fa297efdca1b322

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531d01707aa641045ec072/download

Logs: https://api.biosimulations.org/logs/67531d01707aa641045ec072?includeOutput=true

View: https://api.biosimulations.org/runs/67531d01707aa641045ec072

HTTP response: 201
| +|
[BIOMD0000000453](https://www.ebi.ac.uk/biomodels/BIOMD0000000453)
Bidkhori2012 - EGFR signallingBidkhori2012 - EGFR signalling in NSCLC
|
pass[BIOMD0000000453_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000453#Files)
|pass|
pass[BIOMD0000000453_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000453#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531d259fa297efdca1b340/download

Logs: https://api.biosimulations.org/logs/67531d259fa297efdca1b340?includeOutput=true

View: https://api.biosimulations.org/runs/67531d259fa297efdca1b340

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531d22c3054f763d5518b2/download

Logs: https://api.biosimulations.org/logs/67531d22c3054f763d5518b2?includeOutput=true

View: https://api.biosimulations.org/runs/67531d22c3054f763d5518b2

HTTP response: 201
| +|
[BIOMD0000000454](https://www.ebi.ac.uk/biomodels/BIOMD0000000454)
Smallbone2013 - Metabolic ContSmallbone2013 - Metabolic Control Analysis - Example 1
|
pass[BIOMD0000000454_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000454#Files)
|pass|
pass[BIOMD0000000454_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000454#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531d44c3054f763d5518d2/download

Logs: https://api.biosimulations.org/logs/67531d44c3054f763d5518d2?includeOutput=true

View: https://api.biosimulations.org/runs/67531d44c3054f763d5518d2

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531d419fa297efdca1b34d/download

Logs: https://api.biosimulations.org/logs/67531d419fa297efdca1b34d?includeOutput=true

View: https://api.biosimulations.org/runs/67531d419fa297efdca1b34d

HTTP response: 201
| +|
[BIOMD0000000455](https://www.ebi.ac.uk/biomodels/BIOMD0000000455)
Smallbone2013 - Metabolic ContSmallbone2013 - Metabolic Control Analysis - Example 2
|
pass[BIOMD0000000455_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000455#Files)
|pass|
pass[BIOMD0000000455_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000455#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531d569fa297efdca1b364/download

Logs: https://api.biosimulations.org/logs/67531d569fa297efdca1b364?includeOutput=true

View: https://api.biosimulations.org/runs/67531d569fa297efdca1b364

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531d54707aa641045ec0a5/download

Logs: https://api.biosimulations.org/logs/67531d54707aa641045ec0a5?includeOutput=true

View: https://api.biosimulations.org/runs/67531d54707aa641045ec0a5

HTTP response: 201
| +|
[BIOMD0000000456](https://www.ebi.ac.uk/biomodels/BIOMD0000000456)
Smallbone2013 - Metabolic ContSmallbone2013 - Metabolic Control Analysis - Example 3
|
pass[BIOMD0000000456_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000456#Files)
|pass|
pass[BIOMD0000000456_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000456#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67531d69c3054f763d551905/download

Logs: https://api.biosimulations.org/logs/67531d69c3054f763d551905?includeOutput=true

View: https://api.biosimulations.org/runs/67531d69c3054f763d551905

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67531d679fa297efdca1b371/download

Logs: https://api.biosimulations.org/logs/67531d679fa297efdca1b371?includeOutput=true

View: https://api.biosimulations.org/runs/67531d679fa297efdca1b371

HTTP response: 201
| +|
[BIOMD0000000457](https://www.ebi.ac.uk/biomodels/BIOMD0000000457)
Firczuk2013 - Eukaryotic mRNA Firczuk2013 - Eukaryotic mRNA translation machinery
|
pass[BIOMD0000000457_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000457#Files)
|pass|
pass[BIOMD0000000457_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000457#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675320b5707aa641045ec0f0/download

Logs: https://api.biosimulations.org/logs/675320b5707aa641045ec0f0?includeOutput=true

View: https://api.biosimulations.org/runs/675320b5707aa641045ec0f0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675320999fa297efdca1b3ac/download

Logs: https://api.biosimulations.org/logs/675320999fa297efdca1b3ac?includeOutput=true

View: https://api.biosimulations.org/runs/675320999fa297efdca1b3ac

HTTP response: 201
| +|[BIOMD0000000458](https://www.ebi.ac.uk/biomodels/BIOMD0000000458)
Smallbone2013 - Serine biosynthesis|
pass[BIOMD0000000458_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000458#Files)
|pass|
pass[BIOMD0000000458_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000458#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675321ea9fa297efdca1b3df/download

Logs: https://api.biosimulations.org/logs/675321ea9fa297efdca1b3df?includeOutput=true

View: https://api.biosimulations.org/runs/675321ea9fa297efdca1b3df

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675321e89fa297efdca1b3dc/download

Logs: https://api.biosimulations.org/logs/675321e89fa297efdca1b3dc?includeOutput=true

View: https://api.biosimulations.org/runs/675321e89fa297efdca1b3dc

HTTP response: 201
| +|
[BIOMD0000000459](https://www.ebi.ac.uk/biomodels/BIOMD0000000459)
Liebal2012 - B.subtilis post-tLiebal2012 - B.subtilis post-transcriptional instability model
|
pass[BIOMD0000000459_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000459#Files)
|pass|
pass[BIOMD0000000459.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000459#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532205707aa641045ec133/download

Logs: https://api.biosimulations.org/logs/67532205707aa641045ec133?includeOutput=true

View: https://api.biosimulations.org/runs/67532205707aa641045ec133

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675322039fa297efdca1b3f1/download

Logs: https://api.biosimulations.org/logs/675322039fa297efdca1b3f1?includeOutput=true

View: https://api.biosimulations.org/runs/675322039fa297efdca1b3f1

HTTP response: 201
| +|
[BIOMD0000000460](https://www.ebi.ac.uk/biomodels/BIOMD0000000460)
Liebal2012 - B.subtilis sigB pLiebal2012 - B.subtilis sigB proteolysis model
|
pass[BIOMD0000000460_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000460#Files)
|pass|
pass[BIOMD0000000460.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000460#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753221b9fa297efdca1b40c/download

Logs: https://api.biosimulations.org/logs/6753221b9fa297efdca1b40c?includeOutput=true

View: https://api.biosimulations.org/runs/6753221b9fa297efdca1b40c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675322189fa297efdca1b409/download

Logs: https://api.biosimulations.org/logs/675322189fa297efdca1b409?includeOutput=true

View: https://api.biosimulations.org/runs/675322189fa297efdca1b409

HTTP response: 201
| +|
[BIOMD0000000461](https://www.ebi.ac.uk/biomodels/BIOMD0000000461)
Liebal2012 - B.subtilis transcLiebal2012 - B.subtilis transcription inhibition model
|
pass[BIOMD0000000461_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000461#Files)
|pass|
pass[BIOMD0000000461.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000461#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675322309fa297efdca1b416/download

Logs: https://api.biosimulations.org/logs/675322309fa297efdca1b416?includeOutput=true

View: https://api.biosimulations.org/runs/675322309fa297efdca1b416

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753222e707aa641045ec157/download

Logs: https://api.biosimulations.org/logs/6753222e707aa641045ec157?includeOutput=true

View: https://api.biosimulations.org/runs/6753222e707aa641045ec157

HTTP response: 201
| +|
[BIOMD0000000462](https://www.ebi.ac.uk/biomodels/BIOMD0000000462)
Proctor2012 - Role of Amyloid-Proctor2012 - Role of Amyloid-beta dimers in aggregation formation
|
pass[BIOMD0000000462_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000462#Files)
|pass|
pass[BIOMD0000000462_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000462#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532247707aa641045ec177/download

Logs: https://api.biosimulations.org/logs/67532247707aa641045ec177?includeOutput=true

View: https://api.biosimulations.org/runs/67532247707aa641045ec177

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532245c3054f763d5519b3/download

Logs: https://api.biosimulations.org/logs/67532245c3054f763d5519b3?includeOutput=true

View: https://api.biosimulations.org/runs/67532245c3054f763d5519b3

HTTP response: 201
| +|
[BIOMD0000000463](https://www.ebi.ac.uk/biomodels/BIOMD0000000463)
Heldt2012 - Influenza Virus ReHeldt2012 - Influenza Virus Replication
|
pass[BIOMD0000000463_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000463#Files)
|pass|
pass[BIOMD0000000463_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000463#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753225d9fa297efdca1b43f/download

Logs: https://api.biosimulations.org/logs/6753225d9fa297efdca1b43f?includeOutput=true

View: https://api.biosimulations.org/runs/6753225d9fa297efdca1b43f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753225bc3054f763d5519dd/download

Logs: https://api.biosimulations.org/logs/6753225bc3054f763d5519dd?includeOutput=true

View: https://api.biosimulations.org/runs/6753225bc3054f763d5519dd

HTTP response: 201
| +|
[BIOMD0000000464](https://www.ebi.ac.uk/biomodels/BIOMD0000000464)
Koo2013 - Shear stress inducedKoo2013 - Shear stress induced calcium influx and eNOS activation - Model 1
|
pass[BIOMD0000000464_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000464#Files)
|pass|
pass[BIOMD0000000464_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000464#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532276707aa641045ec1a1/download

Logs: https://api.biosimulations.org/logs/67532276707aa641045ec1a1?includeOutput=true

View: https://api.biosimulations.org/runs/67532276707aa641045ec1a1

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675322749fa297efdca1b450/download

Logs: https://api.biosimulations.org/logs/675322749fa297efdca1b450?includeOutput=true

View: https://api.biosimulations.org/runs/675322749fa297efdca1b450

HTTP response: 201
| +|
[BIOMD0000000465](https://www.ebi.ac.uk/biomodels/BIOMD0000000465)
Koo2013 - Shear stress inducedKoo2013 - Shear stress induced AKT and eNOS phosphorylation - Model 2
|
pass[BIOMD0000000465_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000465#Files)
|pass|
pass[BIOMD0000000465_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000465#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753228c9fa297efdca1b46b/download

Logs: https://api.biosimulations.org/logs/6753228c9fa297efdca1b46b?includeOutput=true

View: https://api.biosimulations.org/runs/6753228c9fa297efdca1b46b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753228ac3054f763d551a01/download

Logs: https://api.biosimulations.org/logs/6753228ac3054f763d551a01?includeOutput=true

View: https://api.biosimulations.org/runs/6753228ac3054f763d551a01

HTTP response: 201
| +|
[BIOMD0000000466](https://www.ebi.ac.uk/biomodels/BIOMD0000000466)
Koo2013 - Shear stress inducedKoo2013 - Shear stress induced eNOS expression - Model 3
|
pass[BIOMD0000000466_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000466#Files)
|FAIL|
pass[BIOMD0000000466_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000466#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675322a2707aa641045ec1d3/download

Logs: https://api.biosimulations.org/logs/675322a2707aa641045ec1d3?includeOutput=true

View: https://api.biosimulations.org/runs/675322a2707aa641045ec1d3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675322a09fa297efdca1b481/download

Logs: https://api.biosimulations.org/logs/675322a09fa297efdca1b481?includeOutput=true

View: https://api.biosimulations.org/runs/675322a09fa297efdca1b481

HTTP response: 201
| +|
[BIOMD0000000467](https://www.ebi.ac.uk/biomodels/BIOMD0000000467)
Koo2013 - Shear stress inducedKoo2013 - Shear stress induced NO production - Model 4
|
pass[BIOMD0000000467_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000467#Files)
|pass|
pass[BIOMD0000000467_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000467#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675322b99fa297efdca1b495/download

Logs: https://api.biosimulations.org/logs/675322b99fa297efdca1b495?includeOutput=true

View: https://api.biosimulations.org/runs/675322b99fa297efdca1b495

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675322b7707aa641045ec1df/download

Logs: https://api.biosimulations.org/logs/675322b7707aa641045ec1df?includeOutput=true

View: https://api.biosimulations.org/runs/675322b7707aa641045ec1df

HTTP response: 201
| +|
[BIOMD0000000468](https://www.ebi.ac.uk/biomodels/BIOMD0000000468)
Koo2013 - Integrated shear strKoo2013 - Integrated shear stress induced NO production model
|
pass[BIOMD0000000468_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000468#Files)
|FAIL|
MultipleSEDMLs['Integratedmodel_noshearstress.sedml', 'Integratedmodel_shearstress.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000469](https://www.ebi.ac.uk/biomodels/BIOMD0000000469)
Smallbone2013 - E.coli metabolSmallbone2013 - E.coli metabolic model with linlog rate law
|
pass[BIOMD0000000469_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000469#Files)
|pass|
pass[BIOMD0000000469_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000469#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675322db9fa297efdca1b4ac/download

Logs: https://api.biosimulations.org/logs/675322db9fa297efdca1b4ac?includeOutput=true

View: https://api.biosimulations.org/runs/675322db9fa297efdca1b4ac

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675322d7707aa641045ec1f8/download

Logs: https://api.biosimulations.org/logs/675322d7707aa641045ec1f8?includeOutput=true

View: https://api.biosimulations.org/runs/675322d7707aa641045ec1f8

HTTP response: 201
| +|
[BIOMD0000000470](https://www.ebi.ac.uk/biomodels/BIOMD0000000470)
Smallbone2013 - E.coli metabolSmallbone2013 - E.coli metabolic model with modular rate law
|
pass[BIOMD0000000470_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000470#Files)
|pass|
pass[BIOMD0000000470_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000470#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6753233dc3054f763d551a57/download

Logs: https://api.biosimulations.org/logs/6753233dc3054f763d551a57?includeOutput=true

View: https://api.biosimulations.org/runs/6753233dc3054f763d551a57

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532339c3054f763d551a54/download

Logs: https://api.biosimulations.org/logs/67532339c3054f763d551a54?includeOutput=true

View: https://api.biosimulations.org/runs/67532339c3054f763d551a54

HTTP response: 201
| +|
[BIOMD0000000471](https://www.ebi.ac.uk/biomodels/BIOMD0000000471)
Smallbone2013 - Yeast metaboliSmallbone2013 - Yeast metabolic model with linlog rate law
|
pass[BIOMD0000000471_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000471#Files)
|pass|
pass[BIOMD0000000471_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000471#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753238fc3054f763d551a79/download

Logs: https://api.biosimulations.org/logs/6753238fc3054f763d551a79?includeOutput=true

View: https://api.biosimulations.org/runs/6753238fc3054f763d551a79

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753238b707aa641045ec236/download

Logs: https://api.biosimulations.org/logs/6753238b707aa641045ec236?includeOutput=true

View: https://api.biosimulations.org/runs/6753238b707aa641045ec236

HTTP response: 201
| +|
[BIOMD0000000472](https://www.ebi.ac.uk/biomodels/BIOMD0000000472)
Smallbone2013 - Yeast metaboliSmallbone2013 - Yeast metabolic model with modular rate law
|
pass[BIOMD0000000472_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000472#Files)
|pass|
pass[BIOMD0000000472_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000472#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675323e2707aa641045ec257/download

Logs: https://api.biosimulations.org/logs/675323e2707aa641045ec257?includeOutput=true

View: https://api.biosimulations.org/runs/675323e2707aa641045ec257

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675323dec3054f763d551a96/download

Logs: https://api.biosimulations.org/logs/675323dec3054f763d551a96?includeOutput=true

View: https://api.biosimulations.org/runs/675323dec3054f763d551a96

HTTP response: 201
| +|
[BIOMD0000000473](https://www.ebi.ac.uk/biomodels/BIOMD0000000473)
Smallbone2013 - Yeast metaboliSmallbone2013 - Yeast metabolic model with modular rate law, merged with Pritchard 2002
|
pass[BIOMD0000000473_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000473#Files)
|FAIL|
pass[BIOMD0000000473_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000473#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532434707aa641045ec27e/download

Logs: https://api.biosimulations.org/logs/67532434707aa641045ec27e?includeOutput=true

View: https://api.biosimulations.org/runs/67532434707aa641045ec27e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753242fc3054f763d551ac0/download

Logs: https://api.biosimulations.org/logs/6753242fc3054f763d551ac0?includeOutput=true

View: https://api.biosimulations.org/runs/6753242fc3054f763d551ac0

HTTP response: 201
| +|
[BIOMD0000000474](https://www.ebi.ac.uk/biomodels/BIOMD0000000474)
Smith2013 - Regulation of InsuSmith2013 - Regulation of Insulin Signalling by Oxidative Stress
|
pass[BIOMD0000000474_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000474#Files)
|pass|
FAIL[MODEL1212210000_eventsForFigure3A.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000474#Files)
|pass|
SEDMLfile```failed to validate SEDML file MODEL1212210000_eventsForFigure3A.sedml```
|
FAILDownload: https://api.biosimulations.org/results/6753247d9fa297efdca1b56c/download

Logs: https://api.biosimulations.org/logs/6753247d9fa297efdca1b56c?includeOutput=true

View: https://api.biosimulations.org/runs/6753247d9fa297efdca1b56c

HTTP response: 201

Error message: `/root/archive.omex` is not a valid COMBINE/OMEX archive. - The SED-ML file at location `./MODEL1212210000_eventsForFigure3A.sedml` is invalid. - Model `model` is invalid. - The model file `MODEL1212210000_eventsForFigure3A.xml` is invalid. - `/tmp/tmpli0cefxp/./MODEL1212210000_eventsForFigure3A.xml` is not a file.

Exception type: ValueError
|
FAILDownload: https://api.biosimulations.org/results/675324779fa297efdca1b568/download

Logs: https://api.biosimulations.org/logs/675324779fa297efdca1b568?includeOutput=true

View: https://api.biosimulations.org/runs/675324779fa297efdca1b568

HTTP response: 201

Error message: `/root/archive.omex` is not a valid COMBINE/OMEX archive. - The SED-ML file at location `./MODEL1212210000_eventsForFigure3A.sedml` is invalid. - Model `model` is invalid. - The model file `MODEL1212210000_eventsForFigure3A.xml` is invalid. - `/tmp/tmp_5kdot_y/./MODEL1212210000_eventsForFigure3A.xml` is not a file.

Exception type: ValueError
| +|
[BIOMD0000000475](https://www.ebi.ac.uk/biomodels/BIOMD0000000475)
Amara2013 - PCNA ubiquitylatioAmara2013 - PCNA ubiquitylation in the activation of PRR pathway
|
pass[BIOMD0000000475_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000475#Files)
|pass|
pass[BIOMD0000000475_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000475#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753248e9fa297efdca1b57b/download

Logs: https://api.biosimulations.org/logs/6753248e9fa297efdca1b57b?includeOutput=true

View: https://api.biosimulations.org/runs/6753248e9fa297efdca1b57b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753248b707aa641045ec2a4/download

Logs: https://api.biosimulations.org/logs/6753248b707aa641045ec2a4?includeOutput=true

View: https://api.biosimulations.org/runs/6753248b707aa641045ec2a4

HTTP response: 201
| +|
[BIOMD0000000476](https://www.ebi.ac.uk/biomodels/BIOMD0000000476)
Adams2012 - Locke2006 CircadiaAdams2012 - Locke2006 Circadian Rhythm model refined with Input Signal Light Function
|
pass[BIOMD0000000476_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000476#Files)
|FAIL|
pass[BIOMD0000000476_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000476#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675324a2707aa641045ec2c9/download

Logs: https://api.biosimulations.org/logs/675324a2707aa641045ec2c9?includeOutput=true

View: https://api.biosimulations.org/runs/675324a2707aa641045ec2c9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675324a0c3054f763d551af8/download

Logs: https://api.biosimulations.org/logs/675324a0c3054f763d551af8?includeOutput=true

View: https://api.biosimulations.org/runs/675324a0c3054f763d551af8

HTTP response: 201
| +|
[BIOMD0000000477](https://www.ebi.ac.uk/biomodels/BIOMD0000000477)
Mol2013 - Immune Signal TransdMol2013 - Immune Signal Transduction in Leishmaniasis
|
pass[BIOMD0000000477_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000477#Files)
|FAIL|
pass[MODEL1308080000_figure5.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000477#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675324b9c3054f763d551b1b/download

Logs: https://api.biosimulations.org/logs/675324b9c3054f763d551b1b?includeOutput=true

View: https://api.biosimulations.org/runs/675324b9c3054f763d551b1b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675324b6c3054f763d551b18/download

Logs: https://api.biosimulations.org/logs/675324b6c3054f763d551b18?includeOutput=true

View: https://api.biosimulations.org/runs/675324b6c3054f763d551b18

HTTP response: 201
| +|
[BIOMD0000000478](https://www.ebi.ac.uk/biomodels/BIOMD0000000478)
Besozzi2012 - Oscillatory regiBesozzi2012 - Oscillatory regimes in the Ras/cAMP/PKA pathway in S.cerevisiae
|
pass[BIOMD0000000478_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000478#Files)
|pass|
pass[BIOMD0000000478_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000478#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675324cfc3054f763d551b39/download

Logs: https://api.biosimulations.org/logs/675324cfc3054f763d551b39?includeOutput=true

View: https://api.biosimulations.org/runs/675324cfc3054f763d551b39

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675324cdc3054f763d551b2c/download

Logs: https://api.biosimulations.org/logs/675324cdc3054f763d551b2c?includeOutput=true

View: https://api.biosimulations.org/runs/675324cdc3054f763d551b2c

HTTP response: 201
| +|
[BIOMD0000000479](https://www.ebi.ac.uk/biomodels/BIOMD0000000479)
Croft2013 - GPCR-RGS interactiCroft2013 - GPCR-RGS interaction that compartmentalizes RGS activity
|
pass[BIOMD0000000479_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000479#Files)
|FAIL|
pass[BIOMD0000000479_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000479#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675324e6707aa641045ec30f/download

Logs: https://api.biosimulations.org/logs/675324e6707aa641045ec30f?includeOutput=true

View: https://api.biosimulations.org/runs/675324e6707aa641045ec30f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675324e4c3054f763d551b41/download

Logs: https://api.biosimulations.org/logs/675324e4c3054f763d551b41?includeOutput=true

View: https://api.biosimulations.org/runs/675324e4c3054f763d551b41

HTTP response: 201
| +|
[BIOMD0000000480](https://www.ebi.ac.uk/biomodels/BIOMD0000000480)
Carbo2013 - Mucosal Immune ResCarbo2013 - Mucosal Immune Response during H.pylori Infection
|
pass[BIOMD0000000480_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000480#Files)
|pass|
pass[BIOMD0000000480_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000480#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675324fe707aa641045ec329/download

Logs: https://api.biosimulations.org/logs/675324fe707aa641045ec329?includeOutput=true

View: https://api.biosimulations.org/runs/675324fe707aa641045ec329

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675324fcc3054f763d551b58/download

Logs: https://api.biosimulations.org/logs/675324fcc3054f763d551b58?includeOutput=true

View: https://api.biosimulations.org/runs/675324fcc3054f763d551b58

HTTP response: 201
| +|
[BIOMD0000000481](https://www.ebi.ac.uk/biomodels/BIOMD0000000481)
Stötzel2012 - Bovine estrous cStötzel2012 - Bovine estrous cycle, synchronization with prostaglandin F2α
|
pass[BIOMD0000000481_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000481#Files)
|pass|
pass[BIOMD0000000481_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000481#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532523c3054f763d551b79/download

Logs: https://api.biosimulations.org/logs/67532523c3054f763d551b79?includeOutput=true

View: https://api.biosimulations.org/runs/67532523c3054f763d551b79

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532521707aa641045ec339/download

Logs: https://api.biosimulations.org/logs/67532521707aa641045ec339?includeOutput=true

View: https://api.biosimulations.org/runs/67532521707aa641045ec339

HTTP response: 201
| +|
[BIOMD0000000482](https://www.ebi.ac.uk/biomodels/BIOMD0000000482)
Noguchi2013 - Insulin dependenNoguchi2013 - Insulin dependent glucose metabolism
|
pass[BIOMD0000000482_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000482#Files)
|pass|
pass[BIOMD0000000482_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000482#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532539707aa641045ec348/download

Logs: https://api.biosimulations.org/logs/67532539707aa641045ec348?includeOutput=true

View: https://api.biosimulations.org/runs/67532539707aa641045ec348

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532537707aa641045ec345/download

Logs: https://api.biosimulations.org/logs/67532537707aa641045ec345?includeOutput=true

View: https://api.biosimulations.org/runs/67532537707aa641045ec345

HTTP response: 201
| +|[BIOMD0000000483](https://www.ebi.ac.uk/biomodels/BIOMD0000000483)
Cao2008 - Network of a toggle switch|
pass[BIOMD0000000483_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000483#Files)
|pass|
pass[BIOMD0000000483_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000483#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753254f707aa641045ec36a/download

Logs: https://api.biosimulations.org/logs/6753254f707aa641045ec36a?includeOutput=true

View: https://api.biosimulations.org/runs/6753254f707aa641045ec36a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753254d707aa641045ec367/download

Logs: https://api.biosimulations.org/logs/6753254d707aa641045ec367?includeOutput=true

View: https://api.biosimulations.org/runs/6753254d707aa641045ec367

HTTP response: 201
| +|
[BIOMD0000000484](https://www.ebi.ac.uk/biomodels/BIOMD0000000484)
Cao2013 - Application of ABSISCao2013 - Application of ABSIS method in birth-death process
|
pass[BIOMD0000000484_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000484#Files)
|pass|
pass[BIOMD0000000484_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000484#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675325639fa297efdca1b625/download

Logs: https://api.biosimulations.org/logs/675325639fa297efdca1b625?includeOutput=true

View: https://api.biosimulations.org/runs/675325639fa297efdca1b625

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532560c3054f763d551ba8/download

Logs: https://api.biosimulations.org/logs/67532560c3054f763d551ba8?includeOutput=true

View: https://api.biosimulations.org/runs/67532560c3054f763d551ba8

HTTP response: 201
| +|
[BIOMD0000000485](https://www.ebi.ac.uk/biomodels/BIOMD0000000485)
Cao2013 - Application of ABSISCao2013 - Application of ABSIS method in the bistable Schlögl model
|
pass[BIOMD0000000485_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000485#Files)
|pass|
pass[BIOMD0000000485_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000485#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532577707aa641045ec394/download

Logs: https://api.biosimulations.org/logs/67532577707aa641045ec394?includeOutput=true

View: https://api.biosimulations.org/runs/67532577707aa641045ec394

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532574707aa641045ec38d/download

Logs: https://api.biosimulations.org/logs/67532574707aa641045ec38d?includeOutput=true

View: https://api.biosimulations.org/runs/67532574707aa641045ec38d

HTTP response: 201
| +|
[BIOMD0000000486](https://www.ebi.ac.uk/biomodels/BIOMD0000000486)
Cao2013 - Application of ABSISCao2013 - Application of ABSIS method in the reversible isomerization model
|
pass[BIOMD0000000486_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000486#Files)
|pass|
pass[BIOMD0000000486_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000486#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753258a9fa297efdca1b655/download

Logs: https://api.biosimulations.org/logs/6753258a9fa297efdca1b655?includeOutput=true

View: https://api.biosimulations.org/runs/6753258a9fa297efdca1b655

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532588c3054f763d551bd3/download

Logs: https://api.biosimulations.org/logs/67532588c3054f763d551bd3?includeOutput=true

View: https://api.biosimulations.org/runs/67532588c3054f763d551bd3

HTTP response: 201
| +|
[BIOMD0000000487](https://www.ebi.ac.uk/biomodels/BIOMD0000000487)
Cao2013 - Application of ABSISCao2013 - Application of ABSIS in the the enzymatic futile cycle
|
pass[BIOMD0000000487_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000487#Files)
|pass|
pass[BIOMD0000000487_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000487#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753259d707aa641045ec3b4/download

Logs: https://api.biosimulations.org/logs/6753259d707aa641045ec3b4?includeOutput=true

View: https://api.biosimulations.org/runs/6753259d707aa641045ec3b4

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753259b9fa297efdca1b664/download

Logs: https://api.biosimulations.org/logs/6753259b9fa297efdca1b664?includeOutput=true

View: https://api.biosimulations.org/runs/6753259b9fa297efdca1b664

HTTP response: 201
| +|
[BIOMD0000000488](https://www.ebi.ac.uk/biomodels/BIOMD0000000488)
Proctor2013 - Effect of Aβ immProctor2013 - Effect of Aβ immunisation in Alzheimer's disease (deterministic version)
|
pass[BIOMD0000000488_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000488#Files)
|pass|
pass[BIOMD0000000488_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000488#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675325b19fa297efdca1b67d/download

Logs: https://api.biosimulations.org/logs/675325b19fa297efdca1b67d?includeOutput=true

View: https://api.biosimulations.org/runs/675325b19fa297efdca1b67d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675325afc3054f763d551bf5/download

Logs: https://api.biosimulations.org/logs/675325afc3054f763d551bf5?includeOutput=true

View: https://api.biosimulations.org/runs/675325afc3054f763d551bf5

HTTP response: 201
| +|
[BIOMD0000000489](https://www.ebi.ac.uk/biomodels/BIOMD0000000489)
Sharp2013 - LipopolysaccharideSharp2013 - Lipopolysaccharide induced NFkB activation
|
pass[BIOMD0000000489_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000489#Files)
|pass|
pass[BIOMD0000000489_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000489#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675325cd9fa297efdca1b698/download

Logs: https://api.biosimulations.org/logs/675325cd9fa297efdca1b698?includeOutput=true

View: https://api.biosimulations.org/runs/675325cd9fa297efdca1b698

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675325cbc3054f763d551c0f/download

Logs: https://api.biosimulations.org/logs/675325cbc3054f763d551c0f?includeOutput=true

View: https://api.biosimulations.org/runs/675325cbc3054f763d551c0f

HTTP response: 201
| +|
[BIOMD0000000490](https://www.ebi.ac.uk/biomodels/BIOMD0000000490)
Demin2013 - PKPD behaviour - 5Demin2013 - PKPD behaviour - 5-Lipoxygenase inhibitors
|
pass[BIOMD0000000490_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000490#Files)
|pass|
MultipleSEDMLs['Demin2013_ML10mg.sedml', 'Demin2013_ML50mg.sedml', 'Demin2013_ZL400mg.sedml', 'Demin2013_ZL600mg.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000491](https://www.ebi.ac.uk/biomodels/BIOMD0000000491)
Pathak2013 - MAPK activation iPathak2013 - MAPK activation in response to various abiotic stresses
|
pass[BIOMD0000000491_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000491#Files)
|pass|
pass[BIOMD0000000491_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000491#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675325e7c3054f763d551c27/download

Logs: https://api.biosimulations.org/logs/675325e7c3054f763d551c27?includeOutput=true

View: https://api.biosimulations.org/runs/675325e7c3054f763d551c27

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675325e5c3054f763d551c24/download

Logs: https://api.biosimulations.org/logs/675325e5c3054f763d551c24?includeOutput=true

View: https://api.biosimulations.org/runs/675325e5c3054f763d551c24

HTTP response: 201
| +|
[BIOMD0000000492](https://www.ebi.ac.uk/biomodels/BIOMD0000000492)
Pathak2013 - MAPK activation iPathak2013 - MAPK activation in response to various biotic stresses
|
pass[BIOMD0000000492_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000492#Files)
|pass|
pass[BIOMD0000000492_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000492#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532603707aa641045ec3fe/download

Logs: https://api.biosimulations.org/logs/67532603707aa641045ec3fe?includeOutput=true

View: https://api.biosimulations.org/runs/67532603707aa641045ec3fe

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675326009fa297efdca1b6cf/download

Logs: https://api.biosimulations.org/logs/675326009fa297efdca1b6cf?includeOutput=true

View: https://api.biosimulations.org/runs/675326009fa297efdca1b6cf

HTTP response: 201
| +|
[BIOMD0000000494](https://www.ebi.ac.uk/biomodels/BIOMD0000000494)
Roblitz2013 - Menstrual Cycle Roblitz2013 - Menstrual Cycle following GnRH analogue administration
|
pass[BIOMD0000000494_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000494#Files)
|pass|
pass[BIOMD0000000494_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000494#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753261e707aa641045ec411/download

Logs: https://api.biosimulations.org/logs/6753261e707aa641045ec411?includeOutput=true

View: https://api.biosimulations.org/runs/6753261e707aa641045ec411

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753261c707aa641045ec40c/download

Logs: https://api.biosimulations.org/logs/6753261c707aa641045ec40c?includeOutput=true

View: https://api.biosimulations.org/runs/6753261c707aa641045ec40c

HTTP response: 201
| +|
[BIOMD0000000496](https://www.ebi.ac.uk/biomodels/BIOMD0000000496)
Stanford2013 - Kinetic model oStanford2013 - Kinetic model of yeast metabolic network (standard)
|
pass[BIOMD0000000496_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000496#Files)
|pass|
pass[BIOMD0000000496_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000496#Files)
|pass|
other```the symbol 'V_o' is not physically stored in the ModelData structure, it either does not exists or is defined by an assigment rule (hence it is not a terminal symbol), at ?loadSymbolValue@ModelDataLoadSymbolResolver@rrllvm@@UEAAPEAVValue@llvm@@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@AEBV?$ArrayRef@PEAVValue@llvm@@@4@@Z```
|
passDownload: https://api.biosimulations.org/results/67532646707aa641045ec423/download

Logs: https://api.biosimulations.org/logs/67532646707aa641045ec423?includeOutput=true

View: https://api.biosimulations.org/runs/67532646707aa641045ec423

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675326429fa297efdca1b704/download

Logs: https://api.biosimulations.org/logs/675326429fa297efdca1b704?includeOutput=true

View: https://api.biosimulations.org/runs/675326429fa297efdca1b704

HTTP response: 201
| +|
[BIOMD0000000497](https://www.ebi.ac.uk/biomodels/BIOMD0000000497)
Stanford2013 - Kinetic model oStanford2013 - Kinetic model of yeast metabolic network (regulation)
|
pass[BIOMD0000000497_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000497#Files)
|pass|
pass[BIOMD0000000497_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000497#Files)
|pass|
other```the symbol 'V_o' is not physically stored in the ModelData structure, it either does not exists or is defined by an assigment rule (hence it is not a terminal symbol), at ?loadSymbolValue@ModelDataLoadSymbolResolver@rrllvm@@UEAAPEAVValue@llvm@@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@AEBV?$ArrayRef@PEAVValue@llvm@@@4@@Z```
|
passDownload: https://api.biosimulations.org/results/675326839fa297efdca1b71b/download

Logs: https://api.biosimulations.org/logs/675326839fa297efdca1b71b?includeOutput=true

View: https://api.biosimulations.org/runs/675326839fa297efdca1b71b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753267fc3054f763d551c85/download

Logs: https://api.biosimulations.org/logs/6753267fc3054f763d551c85?includeOutput=true

View: https://api.biosimulations.org/runs/6753267fc3054f763d551c85

HTTP response: 201
| +|[BIOMD0000000498](https://www.ebi.ac.uk/biomodels/BIOMD0000000498)
Mitchell2013 - Liver Iron Metabolism|
pass[BIOMD0000000498_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000498#Files)
|pass|
pass[BIOMD0000000498.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000498#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675326b7707aa641045ec45a/download

Logs: https://api.biosimulations.org/logs/675326b7707aa641045ec45a?includeOutput=true

View: https://api.biosimulations.org/runs/675326b7707aa641045ec45a

HTTP response: 201
|
FAILDownload: https://api.biosimulations.org/results/675326b5707aa641045ec457/download

Logs: https://api.biosimulations.org/logs/675326b5707aa641045ec457?includeOutput=true

View: https://api.biosimulations.org/runs/675326b5707aa641045ec457

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :Simulation type `` not currently supported

Exception type: CombineArchiveExecutionError
| +|
[BIOMD0000000499](https://www.ebi.ac.uk/biomodels/BIOMD0000000499)
Vizan2013 - TGF pathway long tVizan2013 - TGF pathway long term signaling
|
pass[BIOMD0000000499_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000499#Files)
|pass|
pass[BIOMD0000000499_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000499#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675326d6707aa641045ec472/download

Logs: https://api.biosimulations.org/logs/675326d6707aa641045ec472?includeOutput=true

View: https://api.biosimulations.org/runs/675326d6707aa641045ec472

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675326d4707aa641045ec46f/download

Logs: https://api.biosimulations.org/logs/675326d4707aa641045ec46f?includeOutput=true

View: https://api.biosimulations.org/runs/675326d4707aa641045ec46f

HTTP response: 201
| +|
[BIOMD0000000500](https://www.ebi.ac.uk/biomodels/BIOMD0000000500)
Begitt2014 - STAT1 cooperativeBegitt2014 - STAT1 cooperative DNA binding - single GAS polymer model
|
pass[BIOMD0000000500_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000500#Files)
|pass|
MultipleSEDMLs['MODEL1311130001_highcoop.sedml', 'MODEL1311130001_lowcoop.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000501](https://www.ebi.ac.uk/biomodels/BIOMD0000000501)
Begitt2014 - STAT1 cooperativeBegitt2014 - STAT1 cooperative DNA binding - double GAS polymer model
|
pass[BIOMD0000000501_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000501#Files)
|pass|
FAIL[MODEL1311130000_lowcoop.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000501#Files)
|pass|
SEDMLfile```failed to validate SEDML file MODEL1311130000_lowcoop.sedml```
|
FAILDownload: https://api.biosimulations.org/results/675326ea707aa641045ec47d/download

Logs: https://api.biosimulations.org/logs/675326ea707aa641045ec47d?includeOutput=true

View: https://api.biosimulations.org/runs/675326ea707aa641045ec47d

HTTP response: 201

Error message: `/root/archive.omex` is not a valid COMBINE/OMEX archive. - The SED-ML file at location `./MODEL1311130000_lowcoop.sedml` is invalid. - Model `model` is invalid. - The model file `MODEL1311130000_lowcoop.xml` is invalid. - `/tmp/tmprfht0ttl/./MODEL1311130000_lowcoop.xml` is not a file.

Exception type: ValueError
|
FAILDownload: https://api.biosimulations.org/results/675326e89fa297efdca1b751/download

Logs: https://api.biosimulations.org/logs/675326e89fa297efdca1b751?includeOutput=true

View: https://api.biosimulations.org/runs/675326e89fa297efdca1b751

HTTP response: 201

Error message: `/root/archive.omex` is not a valid COMBINE/OMEX archive. - The SED-ML file at location `./MODEL1311130000_lowcoop.sedml` is invalid. - Model `model` is invalid. - The model file `MODEL1311130000_lowcoop.xml` is invalid. - `/tmp/tmp1r2jd9pz/./MODEL1311130000_lowcoop.xml` is not a file.

Exception type: ValueError
| +|
[BIOMD0000000502](https://www.ebi.ac.uk/biomodels/BIOMD0000000502)
Messiha2013 - Pentose phosphatMessiha2013 - Pentose phosphate pathway model
|
pass[BIOMD0000000502_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000502#Files)
|pass|
pass[BIOMD0000000502_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000502#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675326fb707aa641045ec48d/download

Logs: https://api.biosimulations.org/logs/675326fb707aa641045ec48d?includeOutput=true

View: https://api.biosimulations.org/runs/675326fb707aa641045ec48d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675326f9707aa641045ec489/download

Logs: https://api.biosimulations.org/logs/675326f9707aa641045ec489?includeOutput=true

View: https://api.biosimulations.org/runs/675326f9707aa641045ec489

HTTP response: 201
| +|
[BIOMD0000000503](https://www.ebi.ac.uk/biomodels/BIOMD0000000503)
Messiha2013 - combined glycolyMessiha2013 - combined glycolysis and pentose phosphate pathway model
|
pass[BIOMD0000000503_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000503#Files)
|pass|
pass[BIOMD0000000503_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000503#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532712c3054f763d551d04/download

Logs: https://api.biosimulations.org/logs/67532712c3054f763d551d04?includeOutput=true

View: https://api.biosimulations.org/runs/67532712c3054f763d551d04

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753270f707aa641045ec49e/download

Logs: https://api.biosimulations.org/logs/6753270f707aa641045ec49e?includeOutput=true

View: https://api.biosimulations.org/runs/6753270f707aa641045ec49e

HTTP response: 201
| +|
[BIOMD0000000504](https://www.ebi.ac.uk/biomodels/BIOMD0000000504)
Proctor2013 - Cartilage breakdProctor2013 - Cartilage breakdown, interventions to reduce collagen release
|
pass[BIOMD0000000504_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000504#Files)
|pass|
pass[BIOMD0000000504_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000504#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753272c707aa641045ec4bf/download

Logs: https://api.biosimulations.org/logs/6753272c707aa641045ec4bf?includeOutput=true

View: https://api.biosimulations.org/runs/6753272c707aa641045ec4bf

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753272a707aa641045ec4bc/download

Logs: https://api.biosimulations.org/logs/6753272a707aa641045ec4bc?includeOutput=true

View: https://api.biosimulations.org/runs/6753272a707aa641045ec4bc

HTTP response: 201
| +|
[BIOMD0000000505](https://www.ebi.ac.uk/biomodels/BIOMD0000000505)
vanEunen2013 - Network dynamicvanEunen2013 - Network dynamics of fatty acid β-oxidation (steady-state model)
|
pass[BIOMD0000000505_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000505#Files)
|FAIL|
pass[BIOMD0000000505_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000505#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753274b9fa297efdca1b7c0/download

Logs: https://api.biosimulations.org/logs/6753274b9fa297efdca1b7c0?includeOutput=true

View: https://api.biosimulations.org/runs/6753274b9fa297efdca1b7c0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532748707aa641045ec4e0/download

Logs: https://api.biosimulations.org/logs/67532748707aa641045ec4e0?includeOutput=true

View: https://api.biosimulations.org/runs/67532748707aa641045ec4e0

HTTP response: 201
| +|
[BIOMD0000000506](https://www.ebi.ac.uk/biomodels/BIOMD0000000506)
vanEunen2013 - Network dynamicvanEunen2013 - Network dynamics of fatty acid β-oxidation (time-course model)
|
pass[BIOMD0000000506_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000506#Files)
|FAIL|
pass[BIOMD0000000506_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000506#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532768c3054f763d551d6a/download

Logs: https://api.biosimulations.org/logs/67532768c3054f763d551d6a?includeOutput=true

View: https://api.biosimulations.org/runs/67532768c3054f763d551d6a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675327659fa297efdca1b7ee/download

Logs: https://api.biosimulations.org/logs/675327659fa297efdca1b7ee?includeOutput=true

View: https://api.biosimulations.org/runs/675327659fa297efdca1b7ee

HTTP response: 201
| +|
[BIOMD0000000507](https://www.ebi.ac.uk/biomodels/BIOMD0000000507)
Gardner2000 - genetic toggle sGardner2000 - genetic toggle switch in E.coli
|
pass[BIOMD0000000507_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000507#Files)
|pass|
pass[BIOMD0000000507_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000507#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532782c3054f763d551d86/download

Logs: https://api.biosimulations.org/logs/67532782c3054f763d551d86?includeOutput=true

View: https://api.biosimulations.org/runs/67532782c3054f763d551d86

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532780c3054f763d551d81/download

Logs: https://api.biosimulations.org/logs/67532780c3054f763d551d81?includeOutput=true

View: https://api.biosimulations.org/runs/67532780c3054f763d551d81

HTTP response: 201
| +|
[BIOMD0000000508](https://www.ebi.ac.uk/biomodels/BIOMD0000000508)
Barrack2014 - Calcium/cell cycBarrack2014 - Calcium/cell cycle coupling - Cyclin D dependent ATP release
|
pass[BIOMD0000000508_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000508#Files)
|FAIL|
pass[BIOMD0000000508_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000508#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532796c3054f763d551d93/download

Logs: https://api.biosimulations.org/logs/67532796c3054f763d551d93?includeOutput=true

View: https://api.biosimulations.org/runs/67532796c3054f763d551d93

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532794c3054f763d551d90/download

Logs: https://api.biosimulations.org/logs/67532794c3054f763d551d90?includeOutput=true

View: https://api.biosimulations.org/runs/67532794c3054f763d551d90

HTTP response: 201
| +|
[BIOMD0000000510](https://www.ebi.ac.uk/biomodels/BIOMD0000000510)
Kerkhoven2013 - Glycolysis andKerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL C (with glucosomal ribokinase)
|
pass[BIOMD0000000510_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000510#Files)
|pass|
pass[BIOMD0000000510_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000510#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675327ac9fa297efdca1b82f/download

Logs: https://api.biosimulations.org/logs/675327ac9fa297efdca1b82f?includeOutput=true

View: https://api.biosimulations.org/runs/675327ac9fa297efdca1b82f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675327a9707aa641045ec53f/download

Logs: https://api.biosimulations.org/logs/675327a9707aa641045ec53f?includeOutput=true

View: https://api.biosimulations.org/runs/675327a9707aa641045ec53f

HTTP response: 201
| +|
[BIOMD0000000511](https://www.ebi.ac.uk/biomodels/BIOMD0000000511)
Kerkhoven2013 - Glycolysis andKerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL D (with ATP:ADP antiporter)
|
pass[BIOMD0000000511_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000511#Files)
|pass|
pass[BIOMD0000000511_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000511#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675327d09fa297efdca1b841/download

Logs: https://api.biosimulations.org/logs/675327d09fa297efdca1b841?includeOutput=true

View: https://api.biosimulations.org/runs/675327d09fa297efdca1b841

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675327ce707aa641045ec55f/download

Logs: https://api.biosimulations.org/logs/675327ce707aa641045ec55f?includeOutput=true

View: https://api.biosimulations.org/runs/675327ce707aa641045ec55f

HTTP response: 201
| +|
[BIOMD0000000517](https://www.ebi.ac.uk/biomodels/BIOMD0000000517)
Smallbone2013 - Colon Crypt cySmallbone2013 - Colon Crypt cycle - Version 3
|
pass[BIOMD0000000517_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000517#Files)
|pass|
pass[BIOMD0000000517_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000517#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675327e79fa297efdca1b85c/download

Logs: https://api.biosimulations.org/logs/675327e79fa297efdca1b85c?includeOutput=true

View: https://api.biosimulations.org/runs/675327e79fa297efdca1b85c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675327e5707aa641045ec573/download

Logs: https://api.biosimulations.org/logs/675327e5707aa641045ec573?includeOutput=true

View: https://api.biosimulations.org/runs/675327e5707aa641045ec573

HTTP response: 201
| +|
[BIOMD0000000518](https://www.ebi.ac.uk/biomodels/BIOMD0000000518)
Smallbone2013 - Colon Crypt cySmallbone2013 - Colon Crypt cycle - Version 2
|
pass[BIOMD0000000518_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000518#Files)
|pass|
pass[BIOMD0000000518_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000518#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675327fcc3054f763d551dd7/download

Logs: https://api.biosimulations.org/logs/675327fcc3054f763d551dd7?includeOutput=true

View: https://api.biosimulations.org/runs/675327fcc3054f763d551dd7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675327f99fa297efdca1b873/download

Logs: https://api.biosimulations.org/logs/675327f99fa297efdca1b873?includeOutput=true

View: https://api.biosimulations.org/runs/675327f99fa297efdca1b873

HTTP response: 201
| +|
[BIOMD0000000519](https://www.ebi.ac.uk/biomodels/BIOMD0000000519)
Smallbone2013 - Colon Crypt cySmallbone2013 - Colon Crypt cycle - Version 1
|
pass[BIOMD0000000519_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000519#Files)
|pass|
pass[BIOMD0000000519_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000519#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753280d9fa297efdca1b87c/download

Logs: https://api.biosimulations.org/logs/6753280d9fa297efdca1b87c?includeOutput=true

View: https://api.biosimulations.org/runs/6753280d9fa297efdca1b87c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753280b707aa641045ec58c/download

Logs: https://api.biosimulations.org/logs/6753280b707aa641045ec58c?includeOutput=true

View: https://api.biosimulations.org/runs/6753280b707aa641045ec58c

HTTP response: 201
| +|
[BIOMD0000000520](https://www.ebi.ac.uk/biomodels/BIOMD0000000520)
Smallbone2013 - Colon Crypt cySmallbone2013 - Colon Crypt cycle - Version 0
|
pass[BIOMD0000000520_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000520#Files)
|pass|
pass[BIOMD0000000520_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000520#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532822c3054f763d551e06/download

Logs: https://api.biosimulations.org/logs/67532822c3054f763d551e06?includeOutput=true

View: https://api.biosimulations.org/runs/67532822c3054f763d551e06

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753281fc3054f763d551df8/download

Logs: https://api.biosimulations.org/logs/6753281fc3054f763d551df8?includeOutput=true

View: https://api.biosimulations.org/runs/6753281fc3054f763d551df8

HTTP response: 201
| +|
[BIOMD0000000522](https://www.ebi.ac.uk/biomodels/BIOMD0000000522)
Muraro2014 - Vascular patterniMuraro2014 - Vascular patterning in Arabidopsis roots
|
pass[BIOMD0000000522_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000522#Files)
|pass|
pass[BIOMD0000000522_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000522#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532836707aa641045ec5be/download

Logs: https://api.biosimulations.org/logs/67532836707aa641045ec5be?includeOutput=true

View: https://api.biosimulations.org/runs/67532836707aa641045ec5be

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532834c3054f763d551e12/download

Logs: https://api.biosimulations.org/logs/67532834c3054f763d551e12?includeOutput=true

View: https://api.biosimulations.org/runs/67532834c3054f763d551e12

HTTP response: 201
| +|
[BIOMD0000000523](https://www.ebi.ac.uk/biomodels/BIOMD0000000523)
Kallenberger2014 - CD95L inducKallenberger2014 - CD95L induced apoptosis initiated by caspase-8, CD95 HeLa cells (cis/trans variant)
|
pass[BIOMD0000000523_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000523#Files)
|pass|
pass[BIOMD0000000523_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000523#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753284bc3054f763d551e38/download

Logs: https://api.biosimulations.org/logs/6753284bc3054f763d551e38?includeOutput=true

View: https://api.biosimulations.org/runs/6753284bc3054f763d551e38

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532849707aa641045ec5dd/download

Logs: https://api.biosimulations.org/logs/67532849707aa641045ec5dd?includeOutput=true

View: https://api.biosimulations.org/runs/67532849707aa641045ec5dd

HTTP response: 201
| +|
[BIOMD0000000524](https://www.ebi.ac.uk/biomodels/BIOMD0000000524)
Kallenberger2014 - CD95L inducKallenberger2014 - CD95L induced apoptosis initiated by caspase-8, wild-type HeLa cells (cis/trans variant)
|
pass[BIOMD0000000524_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000524#Files)
|pass|
pass[BIOMD0000000524_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000524#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532860c3054f763d551e55/download

Logs: https://api.biosimulations.org/logs/67532860c3054f763d551e55?includeOutput=true

View: https://api.biosimulations.org/runs/67532860c3054f763d551e55

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753285e707aa641045ec5ef/download

Logs: https://api.biosimulations.org/logs/6753285e707aa641045ec5ef?includeOutput=true

View: https://api.biosimulations.org/runs/6753285e707aa641045ec5ef

HTTP response: 201
| +|
[BIOMD0000000525](https://www.ebi.ac.uk/biomodels/BIOMD0000000525)
Kallenberger2014 - CD95L inducKallenberger2014 - CD95L induced apoptosis initiated by caspase-8, CD95 HeLa cells (cis/trans-cis/trans variant)
|
pass[BIOMD0000000525_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000525#Files)
|pass|
pass[BIOMD0000000525_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000525#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675328769fa297efdca1b8dc/download

Logs: https://api.biosimulations.org/logs/675328769fa297efdca1b8dc?includeOutput=true

View: https://api.biosimulations.org/runs/675328769fa297efdca1b8dc

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532874707aa641045ec608/download

Logs: https://api.biosimulations.org/logs/67532874707aa641045ec608?includeOutput=true

View: https://api.biosimulations.org/runs/67532874707aa641045ec608

HTTP response: 201
| +|
[BIOMD0000000526](https://www.ebi.ac.uk/biomodels/BIOMD0000000526)
Kallenberger2014 - CD95L inducKallenberger2014 - CD95L induced apoptosis initiated by caspase-8, wild-type HeLa cells (cis/trans-cis/trans variant)
|
pass[BIOMD0000000526_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000526#Files)
|pass|
pass[BIOMD0000000526_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000526#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753288ec3054f763d551e79/download

Logs: https://api.biosimulations.org/logs/6753288ec3054f763d551e79?includeOutput=true

View: https://api.biosimulations.org/runs/6753288ec3054f763d551e79

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753288c9fa297efdca1b8f1/download

Logs: https://api.biosimulations.org/logs/6753288c9fa297efdca1b8f1?includeOutput=true

View: https://api.biosimulations.org/runs/6753288c9fa297efdca1b8f1

HTTP response: 201
| +|
[BIOMD0000000527](https://www.ebi.ac.uk/biomodels/BIOMD0000000527)
Kaiser2014 - Salmonella persisKaiser2014 - Salmonella persistence after ciprofloxacin treatment
|
pass[BIOMD0000000527_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000527#Files)
|pass|
pass[BIOMD0000000527_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000527#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675328a4707aa641045ec620/download

Logs: https://api.biosimulations.org/logs/675328a4707aa641045ec620?includeOutput=true

View: https://api.biosimulations.org/runs/675328a4707aa641045ec620

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675328a29fa297efdca1b903/download

Logs: https://api.biosimulations.org/logs/675328a29fa297efdca1b903?includeOutput=true

View: https://api.biosimulations.org/runs/675328a29fa297efdca1b903

HTTP response: 201
| +|
[BIOMD0000000528](https://www.ebi.ac.uk/biomodels/BIOMD0000000528)
Fribourg2014 - Dynamics of virFribourg2014 - Dynamics of viral antagonism and innate immune response (H1N1 influenza A virus - Cal/09)
|
pass[BIOMD0000000528_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000528#Files)
|FAIL|
pass[BIOMD0000000528_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000528#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675328b89fa297efdca1b921/download

Logs: https://api.biosimulations.org/logs/675328b89fa297efdca1b921?includeOutput=true

View: https://api.biosimulations.org/runs/675328b89fa297efdca1b921

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675328b69fa297efdca1b91e/download

Logs: https://api.biosimulations.org/logs/675328b69fa297efdca1b91e?includeOutput=true

View: https://api.biosimulations.org/runs/675328b69fa297efdca1b91e

HTTP response: 201
| +|
[BIOMD0000000529](https://www.ebi.ac.uk/biomodels/BIOMD0000000529)
Fribourg2014 - Dynamics of virFribourg2014 - Dynamics of viral antagonism and innate immune response (H1N1 influenza A virus - NC/99)
|
pass[BIOMD0000000529_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000529#Files)
|FAIL|
pass[BIOMD0000000529_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000529#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675328d1c3054f763d551ec7/download

Logs: https://api.biosimulations.org/logs/675328d1c3054f763d551ec7?includeOutput=true

View: https://api.biosimulations.org/runs/675328d1c3054f763d551ec7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675328ce707aa641045ec642/download

Logs: https://api.biosimulations.org/logs/675328ce707aa641045ec642?includeOutput=true

View: https://api.biosimulations.org/runs/675328ce707aa641045ec642

HTTP response: 201
| +|
[BIOMD0000000531](https://www.ebi.ac.uk/biomodels/BIOMD0000000531)
Crespo2012 - Kinetics of AmyloCrespo2012 - Kinetics of Amyloid Fibril Formation
|
pass[BIOMD0000000531_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000531#Files)
|pass|
pass[model.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000531#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675328e7707aa641045ec651/download

Logs: https://api.biosimulations.org/logs/675328e7707aa641045ec651?includeOutput=true

View: https://api.biosimulations.org/runs/675328e7707aa641045ec651

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675328e49fa297efdca1b93c/download

Logs: https://api.biosimulations.org/logs/675328e49fa297efdca1b93c?includeOutput=true

View: https://api.biosimulations.org/runs/675328e49fa297efdca1b93c

HTTP response: 201
| +|
[BIOMD0000000532](https://www.ebi.ac.uk/biomodels/BIOMD0000000532)
Vazquez2014 - Chemical inhibitVazquez2014 - Chemical inhibition from amyloid protein aggregation kinetics
|
pass[BIOMD0000000532_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000532#Files)
|FAIL|
pass[Vazquez2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000532#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675328fa707aa641045ec671/download

Logs: https://api.biosimulations.org/logs/675328fa707aa641045ec671?includeOutput=true

View: https://api.biosimulations.org/runs/675328fa707aa641045ec671

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675328f7707aa641045ec665/download

Logs: https://api.biosimulations.org/logs/675328f7707aa641045ec665?includeOutput=true

View: https://api.biosimulations.org/runs/675328f7707aa641045ec665

HTTP response: 201
| +|
[BIOMD0000000533](https://www.ebi.ac.uk/biomodels/BIOMD0000000533)
Steckmann2012 - Amyloid beta-pSteckmann2012 - Amyloid beta-protein fibrillogenesis (kinetics of secondary structure conversion)
|
pass[BIOMD0000000533_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000533#Files)
|pass|
MultipleSEDMLs['Steckmann2012 (F3).sedml', 'Steckmann2012 (F4).sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000534](https://www.ebi.ac.uk/biomodels/BIOMD0000000534)
Dwivedi2014 - Healthy VolunteeDwivedi2014 - Healthy Volunteer IL6 Model
|
pass[BIOMD0000000534_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000534#Files)
|pass|
pass[BIOMD0000000534_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000534#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675329169fa297efdca1b966/download

Logs: https://api.biosimulations.org/logs/675329169fa297efdca1b966?includeOutput=true

View: https://api.biosimulations.org/runs/675329169fa297efdca1b966

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675329149fa297efdca1b963/download

Logs: https://api.biosimulations.org/logs/675329149fa297efdca1b963?includeOutput=true

View: https://api.biosimulations.org/runs/675329149fa297efdca1b963

HTTP response: 201
| +|
[BIOMD0000000535](https://www.ebi.ac.uk/biomodels/BIOMD0000000535)
Dwivedi2014 - Crohns IL6 DiseaDwivedi2014 - Crohns IL6 Disease model - Anti-IL6 Antibody
|
pass[BIOMD0000000535_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000535#Files)
|pass|
pass[BIOMD0000000535_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000535#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532932707aa641045ec699/download

Logs: https://api.biosimulations.org/logs/67532932707aa641045ec699?includeOutput=true

View: https://api.biosimulations.org/runs/67532932707aa641045ec699

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675329309fa297efdca1b979/download

Logs: https://api.biosimulations.org/logs/675329309fa297efdca1b979?includeOutput=true

View: https://api.biosimulations.org/runs/675329309fa297efdca1b979

HTTP response: 201
| +|
[BIOMD0000000536](https://www.ebi.ac.uk/biomodels/BIOMD0000000536)
Dwivedi2014 - Crohns IL6 DiseaDwivedi2014 - Crohns IL6 Disease model - sgp130 activity
|
pass[BIOMD0000000536_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000536#Files)
|pass|
pass[BIOMD0000000536_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000536#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753294bc3054f763d551f3a/download

Logs: https://api.biosimulations.org/logs/6753294bc3054f763d551f3a?includeOutput=true

View: https://api.biosimulations.org/runs/6753294bc3054f763d551f3a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532949c3054f763d551f33/download

Logs: https://api.biosimulations.org/logs/67532949c3054f763d551f33?includeOutput=true

View: https://api.biosimulations.org/runs/67532949c3054f763d551f33

HTTP response: 201
| +|
[BIOMD0000000537](https://www.ebi.ac.uk/biomodels/BIOMD0000000537)
Dwivedi2014 - Crohns IL6 DiseaDwivedi2014 - Crohns IL6 Disease model - Anti-IL6R Antibody
|
pass[BIOMD0000000537_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000537#Files)
|pass|
pass[BIOMD0000000537_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000537#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532963c3054f763d551f50/download

Logs: https://api.biosimulations.org/logs/67532963c3054f763d551f50?includeOutput=true

View: https://api.biosimulations.org/runs/67532963c3054f763d551f50

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532960c3054f763d551f4d/download

Logs: https://api.biosimulations.org/logs/67532960c3054f763d551f4d?includeOutput=true

View: https://api.biosimulations.org/runs/67532960c3054f763d551f4d

HTTP response: 201
| +|
[BIOMD0000000538](https://www.ebi.ac.uk/biomodels/BIOMD0000000538)
Clarke2000 - One-hit model of Clarke2000 - One-hit model of cell death in neuronal degenerations
|
pass[BIOMD0000000538_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000538#Files)
|pass|
pass[Clarke2000.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000538#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6753297fc3054f763d551f62/download

Logs: https://api.biosimulations.org/logs/6753297fc3054f763d551f62?includeOutput=true

View: https://api.biosimulations.org/runs/6753297fc3054f763d551f62

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753297d9fa297efdca1b9bf/download

Logs: https://api.biosimulations.org/logs/6753297d9fa297efdca1b9bf?includeOutput=true

View: https://api.biosimulations.org/runs/6753297d9fa297efdca1b9bf

HTTP response: 201
| +|
[BIOMD0000000539](https://www.ebi.ac.uk/biomodels/BIOMD0000000539)
François2005 - Mixed Feedback François2005 - Mixed Feedback Loop (two-gene network)
|
pass[BIOMD0000000539_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000539#Files)
|pass|
pass[BIOMD0000000539.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000539#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67532993c3054f763d551f70/download

Logs: https://api.biosimulations.org/logs/67532993c3054f763d551f70?includeOutput=true

View: https://api.biosimulations.org/runs/67532993c3054f763d551f70

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532992707aa641045ec6e4/download

Logs: https://api.biosimulations.org/logs/67532992707aa641045ec6e4?includeOutput=true

View: https://api.biosimulations.org/runs/67532992707aa641045ec6e4

HTTP response: 201
| +|
[BIOMD0000000540](https://www.ebi.ac.uk/biomodels/BIOMD0000000540)
Yugi2014 - Insulin induced sigYugi2014 - Insulin induced signalling (PFKL phosphorylation) - model 1
|
pass[BIOMD0000000540_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000540#Files)
|FAIL|
MultipleSEDMLs['BIOMD0000000540_url.sedml', 'PFKL_ins001.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000541](https://www.ebi.ac.uk/biomodels/BIOMD0000000541)
Yugi2014 - Insulin induced sigYugi2014 - Insulin induced signalling (PFKL phosphorylation) - model 2
|
pass[BIOMD0000000541_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000541#Files)
|FAIL|
MultipleSEDMLs['BIOMD0000000541_url.sedml', 'PFKL_signal_ins001.sedml', 'PFKL_signal_ins100.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000542](https://www.ebi.ac.uk/biomodels/BIOMD0000000542)
Yuraszeck2010 - VulnerabilitieYuraszeck2010 - Vulnerabilities in the Tau Network in Tau Pathophysiology
|
pass[BIOMD0000000542_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000542#Files)
|FAIL|
MultipleSEDMLs['5Yuraszeck2010.sedml', 'Yuraszeck2010.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000543](https://www.ebi.ac.uk/biomodels/BIOMD0000000543)
Qi2013 - IL-6 and IFN crosstalQi2013 - IL-6 and IFN crosstalk model (non-competitive)
|
pass[BIOMD0000000543_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000543#Files)
|pass|
pass[BIOMD0000000543_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000543#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675329aac3054f763d551f82/download

Logs: https://api.biosimulations.org/logs/675329aac3054f763d551f82?includeOutput=true

View: https://api.biosimulations.org/runs/675329aac3054f763d551f82

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675329a79fa297efdca1b9e9/download

Logs: https://api.biosimulations.org/logs/675329a79fa297efdca1b9e9?includeOutput=true

View: https://api.biosimulations.org/runs/675329a79fa297efdca1b9e9

HTTP response: 201
| +|
[BIOMD0000000544](https://www.ebi.ac.uk/biomodels/BIOMD0000000544)
Qi2013 - IL-6 and IFN crosstalQi2013 - IL-6 and IFN crosstalk model
|
pass[BIOMD0000000544_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000544#Files)
|pass|
pass[BIOMD0000000544_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000544#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675329c99fa297efdca1b9fc/download

Logs: https://api.biosimulations.org/logs/675329c99fa297efdca1b9fc?includeOutput=true

View: https://api.biosimulations.org/runs/675329c99fa297efdca1b9fc

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675329c6707aa641045ec716/download

Logs: https://api.biosimulations.org/logs/675329c6707aa641045ec716?includeOutput=true

View: https://api.biosimulations.org/runs/675329c6707aa641045ec716

HTTP response: 201
| +|
[BIOMD0000000545](https://www.ebi.ac.uk/biomodels/BIOMD0000000545)
Ouyang2014 - photomorphogenic Ouyang2014 - photomorphogenic UV-B signalling network
|
pass[BIOMD0000000545_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000545#Files)
|pass|
pass[BIOMD0000000545_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000545#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675329e3707aa641045ec731/download

Logs: https://api.biosimulations.org/logs/675329e3707aa641045ec731?includeOutput=true

View: https://api.biosimulations.org/runs/675329e3707aa641045ec731

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675329e1707aa641045ec72e/download

Logs: https://api.biosimulations.org/logs/675329e1707aa641045ec72e?includeOutput=true

View: https://api.biosimulations.org/runs/675329e1707aa641045ec72e

HTTP response: 201
| +|
[BIOMD0000000546](https://www.ebi.ac.uk/biomodels/BIOMD0000000546)
Miao2010 - Innate and adaptiveMiao2010 - Innate and adaptive immune responses to primary Influenza A Virus infection_1_1
|
FAIL[BIOMD0000000546.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000546#Files)
|FAIL|
pass[BIOMD0000000546.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000546#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
FAILDownload: https://api.biosimulations.org/results/675329f99fa297efdca1ba1f/download

Logs: https://api.biosimulations.org/logs/675329f99fa297efdca1ba1f?includeOutput=true

View: https://api.biosimulations.org/runs/675329f99fa297efdca1ba1f

HTTP response: 201

Error message: `/root/archive.omex` is not a valid COMBINE/OMEX archive. - The SED-ML file at location `./BIOMD0000000546.sedml` is invalid. - Model `model` is invalid. - The model file `BIOMD0000000546.xml` is invalid. - General SBML conformance (10102) at line 432, column 6: An SBML XML document must not contain undefined elements or attributes in the SBML namespace. Documents containing unknown elements or attributes placed in the SBML namespace do not conform to the SBML specification. Reference: L3V1 Section 4.1 Element 'globalRenderInformation' is not part of the definition of 'listOfGlobalRenderInformation' in SBML Level 3 Version 1 Package render Version 1. - General SBML conformance (10102) at line 432, column 6: An SBML XML document must not contain undefined elements or attributes in the SBML namespace. Documents containing unknown elements or attributes placed in the SBML namespace do not conform to the SBML specification. Reference: L3V1 Section 4.1 Element 'globalRenderInformation' is not part of the definition of 'listOfGlobalRenderInformation' in SBML Level 3 Version 1 Package render Version 1. - General SBML conformance (10102) at line 432, column 6: An SBML XML document must not contain undefined elements or attributes in the SBML namespace. Documents containing unknown elements or attributes placed in the SBML namespace do not conform to the SBML specification. Reference: L3V1 Section 4.1 Element 'globalRenderInformation' is not part of the definition of 'listOfGlobalRenderInformation' in SBML Level 3 Version 1 Package render Version 1. - General SBML conformance (10102) at line 432, column 6: An SBML XML document must not contain undefined elements or attributes in the SBML namespace. Documents containing unknown elements or attributes placed in the SBML namespace do not conform to the SBML specification. Reference: L3V1 Section 4.1 Element 'globalRenderInformation' is not part of the definition of 'listOfGlobalRenderInformation' in SBML Level 3 Version 1 Package render Version 1.

Exception type: ValueError
|
FAILDownload: https://api.biosimulations.org/results/675329f7707aa641045ec747/download

Logs: https://api.biosimulations.org/logs/675329f7707aa641045ec747?includeOutput=true

View: https://api.biosimulations.org/runs/675329f7707aa641045ec747

HTTP response: 201

Error message: `/root/archive.omex` is not a valid COMBINE/OMEX archive. - The SED-ML file at location `./BIOMD0000000546.sedml` is invalid. - Model `model` is invalid. - The model file `BIOMD0000000546.xml` is invalid. - General SBML conformance (10102) at line 432, column 6: An SBML XML document must not contain undefined elements or attributes in the SBML namespace. Documents containing unknown elements or attributes placed in the SBML namespace do not conform to the SBML specification. Reference: L3V1 Section 4.1 Element 'globalRenderInformation' is not part of the definition of 'listOfGlobalRenderInformation' in SBML Level 3 Version 1 Package render Version 1. - General SBML conformance (10102) at line 432, column 6: An SBML XML document must not contain undefined elements or attributes in the SBML namespace. Documents containing unknown elements or attributes placed in the SBML namespace do not conform to the SBML specification. Reference: L3V1 Section 4.1 Element 'globalRenderInformation' is not part of the definition of 'listOfGlobalRenderInformation' in SBML Level 3 Version 1 Package render Version 1. - General SBML conformance (10102) at line 432, column 6: An SBML XML document must not contain undefined elements or attributes in the SBML namespace. Documents containing unknown elements or attributes placed in the SBML namespace do not conform to the SBML specification. Reference: L3V1 Section 4.1 Element 'globalRenderInformation' is not part of the definition of 'listOfGlobalRenderInformation' in SBML Level 3 Version 1 Package render Version 1. - General SBML conformance (10102) at line 432, column 6: An SBML XML document must not contain undefined elements or attributes in the SBML namespace. Documents containing unknown elements or attributes placed in the SBML namespace do not conform to the SBML specification. Reference: L3V1 Section 4.1 Element 'globalRenderInformation' is not part of the definition of 'listOfGlobalRenderInformation' in SBML Level 3 Version 1 Package render Version 1.

Exception type: ValueError
| +|
[BIOMD0000000547](https://www.ebi.ac.uk/biomodels/BIOMD0000000547)
Talemi2014 - Arsenic toxicity Talemi2014 - Arsenic toxicity and detoxification mechanisms in yeast
|
pass[BIOMD0000000547_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000547#Files)
|FAIL|
pass[BIOMD0000000547_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000547#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532a0a9fa297efdca1ba30/download

Logs: https://api.biosimulations.org/logs/67532a0a9fa297efdca1ba30?includeOutput=true

View: https://api.biosimulations.org/runs/67532a0a9fa297efdca1ba30

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532a07c3054f763d551fc5/download

Logs: https://api.biosimulations.org/logs/67532a07c3054f763d551fc5?includeOutput=true

View: https://api.biosimulations.org/runs/67532a07c3054f763d551fc5

HTTP response: 201
| +|
[BIOMD0000000548](https://www.ebi.ac.uk/biomodels/BIOMD0000000548)
Sneppen2009 - Modeling proteasSneppen2009 - Modeling proteasome dynamics in Parkinson's disease
|
pass[BIOMD0000000548_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000548#Files)
|pass|
pass[Sneppen2009.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000548#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67532a209fa297efdca1ba49/download

Logs: https://api.biosimulations.org/logs/67532a209fa297efdca1ba49?includeOutput=true

View: https://api.biosimulations.org/runs/67532a209fa297efdca1ba49

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532a1dc3054f763d552000/download

Logs: https://api.biosimulations.org/logs/67532a1dc3054f763d552000?includeOutput=true

View: https://api.biosimulations.org/runs/67532a1dc3054f763d552000

HTTP response: 201
| +|
[BIOMD0000000549](https://www.ebi.ac.uk/biomodels/BIOMD0000000549)
Baker2013 - Cytokine Mediated Baker2013 - Cytokine Mediated Inflammation in Rheumatoid Arthritis - Age Dependent
|
pass[BIOMD0000000549_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000549#Files)
|pass|
pass[BIOMD0000000549_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000549#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532a32707aa641045ec7a1/download

Logs: https://api.biosimulations.org/logs/67532a32707aa641045ec7a1?includeOutput=true

View: https://api.biosimulations.org/runs/67532a32707aa641045ec7a1

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532a309fa297efdca1ba57/download

Logs: https://api.biosimulations.org/logs/67532a309fa297efdca1ba57?includeOutput=true

View: https://api.biosimulations.org/runs/67532a309fa297efdca1ba57

HTTP response: 201
| +|
[BIOMD0000000550](https://www.ebi.ac.uk/biomodels/BIOMD0000000550)
Baker2013 - Cytokine Mediated Baker2013 - Cytokine Mediated Inflammation in Rheumatoid Arthritis
|
pass[BIOMD0000000550_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000550#Files)
|pass|
pass[BIOMD0000000550_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000550#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532a46707aa641045ec7bf/download

Logs: https://api.biosimulations.org/logs/67532a46707aa641045ec7bf?includeOutput=true

View: https://api.biosimulations.org/runs/67532a46707aa641045ec7bf

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532a439fa297efdca1ba66/download

Logs: https://api.biosimulations.org/logs/67532a439fa297efdca1ba66?includeOutput=true

View: https://api.biosimulations.org/runs/67532a439fa297efdca1ba66

HTTP response: 201
| +|
[BIOMD0000000551](https://www.ebi.ac.uk/biomodels/BIOMD0000000551)
Das2010 - Effect of a gamma-seDas2010 - Effect of a gamma-secretase inhibitor on Amyloid-beta dynamics
|
pass[BIOMD0000000551_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000551#Files)
|pass|
pass[Das2010(final).sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000551#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67532a59707aa641045ec7d2/download

Logs: https://api.biosimulations.org/logs/67532a59707aa641045ec7d2?includeOutput=true

View: https://api.biosimulations.org/runs/67532a59707aa641045ec7d2

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532a57707aa641045ec7c8/download

Logs: https://api.biosimulations.org/logs/67532a57707aa641045ec7c8?includeOutput=true

View: https://api.biosimulations.org/runs/67532a57707aa641045ec7c8

HTTP response: 201
| +|
[BIOMD0000000552](https://www.ebi.ac.uk/biomodels/BIOMD0000000552)
Ehrenstein2000 - Positive-FeedEhrenstein2000 - Positive-Feedback model for the loss of acetylcholine in Alzheimer's disease
|
pass[BIOMD0000000552_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000552#Files)
|pass|
pass[Ehrenstein2000.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000552#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67532a6f707aa641045ec7dd/download

Logs: https://api.biosimulations.org/logs/67532a6f707aa641045ec7dd?includeOutput=true

View: https://api.biosimulations.org/runs/67532a6f707aa641045ec7dd

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532a6cc3054f763d552051/download

Logs: https://api.biosimulations.org/logs/67532a6cc3054f763d552051?includeOutput=true

View: https://api.biosimulations.org/runs/67532a6cc3054f763d552051

HTTP response: 201
| +|
[BIOMD0000000553](https://www.ebi.ac.uk/biomodels/BIOMD0000000553)
Ehrenstein1997 - The choline-lEhrenstein1997 - The choline-leakage hypothesis in Alzheimer's disease
|
pass[BIOMD0000000553_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000553#Files)
|pass|
pass[Ehrenstein1997.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000553#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67532a84c3054f763d552066/download

Logs: https://api.biosimulations.org/logs/67532a84c3054f763d552066?includeOutput=true

View: https://api.biosimulations.org/runs/67532a84c3054f763d552066

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532a819fa297efdca1bab4/download

Logs: https://api.biosimulations.org/logs/67532a819fa297efdca1bab4?includeOutput=true

View: https://api.biosimulations.org/runs/67532a819fa297efdca1bab4

HTTP response: 201
| +|
[BIOMD0000000554](https://www.ebi.ac.uk/biomodels/BIOMD0000000554)
Cloutier2009 - Brain Energy MeCloutier2009 - Brain Energy Metabolism
|
pass[BIOMD0000000554_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000554#Files)
|pass|
pass[Cloutier2009(final).sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000554#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67532a99707aa641045ec802/download

Logs: https://api.biosimulations.org/logs/67532a99707aa641045ec802?includeOutput=true

View: https://api.biosimulations.org/runs/67532a99707aa641045ec802

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532a979fa297efdca1bad4/download

Logs: https://api.biosimulations.org/logs/67532a979fa297efdca1bad4?includeOutput=true

View: https://api.biosimulations.org/runs/67532a979fa297efdca1bad4

HTTP response: 201
| +|
[BIOMD0000000555](https://www.ebi.ac.uk/biomodels/BIOMD0000000555)
Auer2010 - Correlation betweenAuer2010 - Correlation between lag time and aggregation rate in protein aggregation
|
pass[BIOMD0000000555_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000555#Files)
|pass|
pass[Auer2010.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000555#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67532ab2707aa641045ec813/download

Logs: https://api.biosimulations.org/logs/67532ab2707aa641045ec813?includeOutput=true

View: https://api.biosimulations.org/runs/67532ab2707aa641045ec813

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532ab09fa297efdca1baee/download

Logs: https://api.biosimulations.org/logs/67532ab09fa297efdca1baee?includeOutput=true

View: https://api.biosimulations.org/runs/67532ab09fa297efdca1baee

HTTP response: 201
| +|
[BIOMD0000000556](https://www.ebi.ac.uk/biomodels/BIOMD0000000556)
Ortega2013 - Interplay betweenOrtega2013 - Interplay between secretases determines biphasic amyloid-beta level
|
pass[BIOMD0000000556_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000556#Files)
|FAIL|
MultipleSEDMLs['Ortega2013(NoDrug).sedml', 'Ortega2013.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000557](https://www.ebi.ac.uk/biomodels/BIOMD0000000557)
Reiterer2013 - pseudophosphataReiterer2013 - pseudophosphatase STYX role in ERK signalling
|
pass[BIOMD0000000557_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000557#Files)
|FAIL|
pass[BIOMD0000000557_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000557#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532ac9c3054f763d5520a6/download

Logs: https://api.biosimulations.org/logs/67532ac9c3054f763d5520a6?includeOutput=true

View: https://api.biosimulations.org/runs/67532ac9c3054f763d5520a6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532ac69fa297efdca1baf6/download

Logs: https://api.biosimulations.org/logs/67532ac69fa297efdca1baf6?includeOutput=true

View: https://api.biosimulations.org/runs/67532ac69fa297efdca1baf6

HTTP response: 201
| +|
[BIOMD0000000558](https://www.ebi.ac.uk/biomodels/BIOMD0000000558)
Cloutier2012 - Feedback motif Cloutier2012 - Feedback motif for Parkinson's disease
|
pass[BIOMD0000000558_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000558#Files)
|pass|
pass[Cloutier2012.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000558#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67532adc9fa297efdca1bb0f/download

Logs: https://api.biosimulations.org/logs/67532adc9fa297efdca1bb0f?includeOutput=true

View: https://api.biosimulations.org/runs/67532adc9fa297efdca1bb0f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532ada9fa297efdca1bb08/download

Logs: https://api.biosimulations.org/logs/67532ada9fa297efdca1bb08?includeOutput=true

View: https://api.biosimulations.org/runs/67532ada9fa297efdca1bb08

HTTP response: 201
| +|
[BIOMD0000000559](https://www.ebi.ac.uk/biomodels/BIOMD0000000559)
Ouzounoglou2014 - Modeling of Ouzounoglou2014 - Modeling of alpha-synuclein effects on neuronal homeostasis
|
pass[BIOMD0000000559_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000559#Files)
|pass|
pass[Ouzounoglou2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000559#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67532aef707aa641045ec85a/download

Logs: https://api.biosimulations.org/logs/67532aef707aa641045ec85a?includeOutput=true

View: https://api.biosimulations.org/runs/67532aef707aa641045ec85a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532aed707aa641045ec84f/download

Logs: https://api.biosimulations.org/logs/67532aed707aa641045ec84f?includeOutput=true

View: https://api.biosimulations.org/runs/67532aed707aa641045ec84f

HTTP response: 201
| +|
[BIOMD0000000561](https://www.ebi.ac.uk/biomodels/BIOMD0000000561)
Martins2013 - True and apparenMartins2013 - True and apparent inhibition of amyloid fribril formation
|
pass[BIOMD0000000561_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000561#Files)
|pass|
pass[Martins2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000561#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67532b089fa297efdca1bb3c/download

Logs: https://api.biosimulations.org/logs/67532b089fa297efdca1bb3c?includeOutput=true

View: https://api.biosimulations.org/runs/67532b089fa297efdca1bb3c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532b06707aa641045ec86b/download

Logs: https://api.biosimulations.org/logs/67532b06707aa641045ec86b?includeOutput=true

View: https://api.biosimulations.org/runs/67532b06707aa641045ec86b

HTTP response: 201
| +|
[BIOMD0000000562](https://www.ebi.ac.uk/biomodels/BIOMD0000000562)
Chaouiya2013 - EGF and TNFalphChaouiya2013 - EGF and TNFalpha mediated signalling pathway
|
pass[BIOMD0000000562_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000562#Files)
|pass|NoSEDML|NA|NA|NA|NA| +|
[BIOMD0000000563](https://www.ebi.ac.uk/biomodels/BIOMD0000000563)
Pritchard2014 - plant-microbe Pritchard2014 - plant-microbe interaction
|
pass[BIOMD0000000563_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000563#Files)
|pass|
pass[BIOMD0000000563_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000563#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532b1d9fa297efdca1bb57/download

Logs: https://api.biosimulations.org/logs/67532b1d9fa297efdca1bb57?includeOutput=true

View: https://api.biosimulations.org/runs/67532b1d9fa297efdca1bb57

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532b1a707aa641045ec88f/download

Logs: https://api.biosimulations.org/logs/67532b1a707aa641045ec88f?includeOutput=true

View: https://api.biosimulations.org/runs/67532b1a707aa641045ec88f

HTTP response: 201
| +|
[BIOMD0000000564](https://www.ebi.ac.uk/biomodels/BIOMD0000000564)
Gould2013 - Temperature SensitGould2013 - Temperature Sensitive Circadian Clock
|
pass[BIOMD0000000564_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000564#Files)
|FAIL|
pass[BIOMD0000000564_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000564#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532b789fa297efdca1bb66/download

Logs: https://api.biosimulations.org/logs/67532b789fa297efdca1bb66?includeOutput=true

View: https://api.biosimulations.org/runs/67532b789fa297efdca1bb66

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532b57707aa641045ed007/download

Logs: https://api.biosimulations.org/logs/67532b57707aa641045ed007?includeOutput=true

View: https://api.biosimulations.org/runs/67532b57707aa641045ed007

HTTP response: 201
| +|
[BIOMD0000000565](https://www.ebi.ac.uk/biomodels/BIOMD0000000565)
Machado2014 - Curcumin productMachado2014 - Curcumin production pathway in Escherichia coli
|
pass[BIOMD0000000565_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000565#Files)
|FAIL|
pass[BIOMD0000000565_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000565#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67532be9707aa641045ef3e4/download

Logs: https://api.biosimulations.org/logs/67532be9707aa641045ef3e4?includeOutput=true

View: https://api.biosimulations.org/runs/67532be9707aa641045ef3e4

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67532bdac3054f763d553ea5/download

Logs: https://api.biosimulations.org/logs/67532bdac3054f763d553ea5?includeOutput=true

View: https://api.biosimulations.org/runs/67532bdac3054f763d553ea5

HTTP response: 201
| +|
[BIOMD0000000566](https://www.ebi.ac.uk/biomodels/BIOMD0000000566)
Morris2009 - α-Synuclein aggreMorris2009 - α-Synuclein aggregation variable temperature and pH
|
pass[BIOMD0000000566_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000566#Files)
|pass|
pass[Morris2009.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000566#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675330ca707aa641045ef41b/download

Logs: https://api.biosimulations.org/logs/675330ca707aa641045ef41b?includeOutput=true

View: https://api.biosimulations.org/runs/675330ca707aa641045ef41b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675330c69fa297efdca1bbe5/download

Logs: https://api.biosimulations.org/logs/675330c69fa297efdca1bbe5?includeOutput=true

View: https://api.biosimulations.org/runs/675330c69fa297efdca1bbe5

HTTP response: 201
| +|
[BIOMD0000000567](https://www.ebi.ac.uk/biomodels/BIOMD0000000567)
Morris2008 - Fitting protein aMorris2008 - Fitting protein aggregation data via F-W 2-step mechanism
|
pass[BIOMD0000000567_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000567#Files)
|pass|
pass[Morris2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000567#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675330e6c3054f763d553ef0/download

Logs: https://api.biosimulations.org/logs/675330e6c3054f763d553ef0?includeOutput=true

View: https://api.biosimulations.org/runs/675330e6c3054f763d553ef0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675330e3c3054f763d553eea/download

Logs: https://api.biosimulations.org/logs/675330e3c3054f763d553eea?includeOutput=true

View: https://api.biosimulations.org/runs/675330e3c3054f763d553eea

HTTP response: 201
| +|
[BIOMD0000000568](https://www.ebi.ac.uk/biomodels/BIOMD0000000568)
Mueller2015 - Hepatocyte proliMueller2015 - Hepatocyte proliferation, T160 phosphorylation of CDK2
|
pass[BIOMD0000000568_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000568#Files)
|FAIL|
pass[Mueller2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000568#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675330fd707aa641045ef459/download

Logs: https://api.biosimulations.org/logs/675330fd707aa641045ef459?includeOutput=true

View: https://api.biosimulations.org/runs/675330fd707aa641045ef459

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675330fac3054f763d553f03/download

Logs: https://api.biosimulations.org/logs/675330fac3054f763d553f03?includeOutput=true

View: https://api.biosimulations.org/runs/675330fac3054f763d553f03

HTTP response: 201
| +|
[BIOMD0000000569](https://www.ebi.ac.uk/biomodels/BIOMD0000000569)
Dutta-Roy2015 - Opening of theDutta-Roy2015 - Opening of the multiple AMPA receptor conductance states
|
pass[BIOMD0000000569_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000569#Files)
|pass|
pass[Dutta-Roy2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000569#Files)
|pass|
other```bad variant access```
|
passDownload: https://api.biosimulations.org/results/67533113707aa641045ef464/download

Logs: https://api.biosimulations.org/logs/67533113707aa641045ef464?includeOutput=true

View: https://api.biosimulations.org/runs/67533113707aa641045ef464

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675331119fa297efdca1bc1f/download

Logs: https://api.biosimulations.org/logs/675331119fa297efdca1bc1f?includeOutput=true

View: https://api.biosimulations.org/runs/675331119fa297efdca1bc1f

HTTP response: 201
| +|
[BIOMD0000000570](https://www.ebi.ac.uk/biomodels/BIOMD0000000570)
Aubert2002 - Coupling between Aubert2002 - Coupling between Brain electrical activity, Metabolism and Hemodynamics
|
pass[BIOMD0000000570_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000570#Files)
|pass|
pass[Aubert2002.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000570#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675331289fa297efdca1bc3d/download

Logs: https://api.biosimulations.org/logs/675331289fa297efdca1bc3d?includeOutput=true

View: https://api.biosimulations.org/runs/675331289fa297efdca1bc3d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675331269fa297efdca1bc35/download

Logs: https://api.biosimulations.org/logs/675331269fa297efdca1bc35?includeOutput=true

View: https://api.biosimulations.org/runs/675331269fa297efdca1bc35

HTTP response: 201
| +|
[BIOMD0000000571](https://www.ebi.ac.uk/biomodels/BIOMD0000000571)
Nishio2008 - Design of the phoNishio2008 - Design of the phosphotransferase system for enhanced glucose uptake in E. coli.
|
pass[BIOMD0000000571_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000571#Files)
|pass|
pass[Nishio2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000571#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675331439fa297efdca1bc5d/download

Logs: https://api.biosimulations.org/logs/675331439fa297efdca1bc5d?includeOutput=true

View: https://api.biosimulations.org/runs/675331439fa297efdca1bc5d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67533140c3054f763d553f60/download

Logs: https://api.biosimulations.org/logs/67533140c3054f763d553f60?includeOutput=true

View: https://api.biosimulations.org/runs/67533140c3054f763d553f60

HTTP response: 201
| +|
[BIOMD0000000572](https://www.ebi.ac.uk/biomodels/BIOMD0000000572)
Costa2014 - Computational ModeCosta2014 - Computational Model of L. lactis Metabolism
|
pass[BIOMD0000000572_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000572#Files)
|pass|
pass[Costa2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000572#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6753315d707aa641045ef4ab/download

Logs: https://api.biosimulations.org/logs/6753315d707aa641045ef4ab?includeOutput=true

View: https://api.biosimulations.org/runs/6753315d707aa641045ef4ab

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753315a9fa297efdca1bc6f/download

Logs: https://api.biosimulations.org/logs/6753315a9fa297efdca1bc6f?includeOutput=true

View: https://api.biosimulations.org/runs/6753315a9fa297efdca1bc6f

HTTP response: 201
| +|
[BIOMD0000000573](https://www.ebi.ac.uk/biomodels/BIOMD0000000573)
Aguilera 2014 - HIV latency. IAguilera 2014 - HIV latency. Interaction between HIV proteins and immune response
|
pass[BIOMD0000000573_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000573#Files)
|pass|
pass[Aguilera2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000573#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675331739fa297efdca1bc88/download

Logs: https://api.biosimulations.org/logs/675331739fa297efdca1bc88?includeOutput=true

View: https://api.biosimulations.org/runs/675331739fa297efdca1bc88

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675331719fa297efdca1bc85/download

Logs: https://api.biosimulations.org/logs/675331719fa297efdca1bc85?includeOutput=true

View: https://api.biosimulations.org/runs/675331719fa297efdca1bc85

HTTP response: 201
| +|
[BIOMD0000000574](https://www.ebi.ac.uk/biomodels/BIOMD0000000574)
Lai2014 - Hemiconcerted MWC moLai2014 - Hemiconcerted MWC model of intact calmodulin with two targets
|
pass[BIOMD0000000574_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000574#Files)
|pass|
pass[MODEL1405060000_CaMKIIeffect.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000574#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675331a8707aa641045ef4d9/download

Logs: https://api.biosimulations.org/logs/675331a8707aa641045ef4d9?includeOutput=true

View: https://api.biosimulations.org/runs/675331a8707aa641045ef4d9

HTTP response: 201
|
FAILDownload: https://api.biosimulations.org/results/675331a5c3054f763d553f93/download

Logs: https://api.biosimulations.org/logs/675331a5c3054f763d553f93?includeOutput=true

View: https://api.biosimulations.org/runs/675331a5c3054f763d553f93

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :Simulation type `` not currently supported

Exception type: CombineArchiveExecutionError
| +|
[BIOMD0000000575](https://www.ebi.ac.uk/biomodels/BIOMD0000000575)
Sass2009 - Approach to an α-sySass2009 - Approach to an α-synuclein-based BST model of Parkinson's disease
|
pass[BIOMD0000000575_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000575#Files)
|pass|
pass[Sass2009.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000575#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675331e2707aa641045ef4ed/download

Logs: https://api.biosimulations.org/logs/675331e2707aa641045ef4ed?includeOutput=true

View: https://api.biosimulations.org/runs/675331e2707aa641045ef4ed

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675331dfc3054f763d553faf/download

Logs: https://api.biosimulations.org/logs/675331dfc3054f763d553faf?includeOutput=true

View: https://api.biosimulations.org/runs/675331dfc3054f763d553faf

HTTP response: 201
| +|
[BIOMD0000000576](https://www.ebi.ac.uk/biomodels/BIOMD0000000576)
Kolodkin2013 - Nuclear receptoKolodkin2013 - Nuclear receptor-mediated cortisol signalling network
|
pass[BIOMD0000000576_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000576#Files)
|pass|
pass[BIOMD0000000576_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000576#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675331fac3054f763d553fc9/download

Logs: https://api.biosimulations.org/logs/675331fac3054f763d553fc9?includeOutput=true

View: https://api.biosimulations.org/runs/675331fac3054f763d553fc9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675331f7707aa641045ef4fa/download

Logs: https://api.biosimulations.org/logs/675331f7707aa641045ef4fa?includeOutput=true

View: https://api.biosimulations.org/runs/675331f7707aa641045ef4fa

HTTP response: 201
| +|
[BIOMD0000000577](https://www.ebi.ac.uk/biomodels/BIOMD0000000577)
Zhou2015 - Circadian clock witZhou2015 - Circadian clock with immune regulator NPR1
|
pass[BIOMD0000000577_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000577#Files)
|pass|
pass[BIOMD0000000577_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000577#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67533215707aa641045ef528/download

Logs: https://api.biosimulations.org/logs/67533215707aa641045ef528?includeOutput=true

View: https://api.biosimulations.org/runs/67533215707aa641045ef528

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67533212707aa641045ef525/download

Logs: https://api.biosimulations.org/logs/67533212707aa641045ef525?includeOutput=true

View: https://api.biosimulations.org/runs/67533212707aa641045ef525

HTTP response: 201
| +|
[BIOMD0000000578](https://www.ebi.ac.uk/biomodels/BIOMD0000000578)
Invergo2014 - PhototransductioInvergo2014 - Phototransduction cascade in mouse rod cells
|
pass[BIOMD0000000578_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000578#Files)
|FAIL|
pass[BIOMD0000000578_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000578#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67533233c3054f763d553ffb/download

Logs: https://api.biosimulations.org/logs/67533233c3054f763d553ffb?includeOutput=true

View: https://api.biosimulations.org/runs/67533233c3054f763d553ffb

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753322f707aa641045ef53c/download

Logs: https://api.biosimulations.org/logs/6753322f707aa641045ef53c?includeOutput=true

View: https://api.biosimulations.org/runs/6753322f707aa641045ef53c

HTTP response: 201
| +|
[BIOMD0000000579](https://www.ebi.ac.uk/biomodels/BIOMD0000000579)
Sengupta2015 - Knowledge base Sengupta2015 - Knowledge base model of human energy pool network (HEPNet)
|
pass[BIOMD0000000579_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000579#Files)
|FAIL|
pass[BIOMD0000000579_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000579#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67533254c3054f763d55400c/download

Logs: https://api.biosimulations.org/logs/67533254c3054f763d55400c?includeOutput=true

View: https://api.biosimulations.org/runs/67533254c3054f763d55400c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675332509fa297efdca1bcf5/download

Logs: https://api.biosimulations.org/logs/675332509fa297efdca1bcf5?includeOutput=true

View: https://api.biosimulations.org/runs/675332509fa297efdca1bcf5

HTTP response: 201
| +|
[BIOMD0000000580](https://www.ebi.ac.uk/biomodels/BIOMD0000000580)
Sonntag2012 - mTOR model - IRSSonntag2012 - mTOR model - IRS dependent regulation of AMPK by insulin
|
pass[BIOMD0000000580_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000580#Files)
|pass|
pass[BIOMD0000000580_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000580#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753327a707aa641045ef576/download

Logs: https://api.biosimulations.org/logs/6753327a707aa641045ef576?includeOutput=true

View: https://api.biosimulations.org/runs/6753327a707aa641045ef576

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675332749fa297efdca1bd0b/download

Logs: https://api.biosimulations.org/logs/675332749fa297efdca1bd0b?includeOutput=true

View: https://api.biosimulations.org/runs/675332749fa297efdca1bd0b

HTTP response: 201
| +|
[BIOMD0000000581](https://www.ebi.ac.uk/biomodels/BIOMD0000000581)
DallePezze2012 - TSC-independeDallePezze2012 - TSC-independent mTORC2 regulation
|
pass[BIOMD0000000581_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000581#Files)
|pass|
pass[BIOMD0000000581_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000581#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67533290707aa641045ef587/download

Logs: https://api.biosimulations.org/logs/67533290707aa641045ef587?includeOutput=true

View: https://api.biosimulations.org/runs/67533290707aa641045ef587

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753328e707aa641045ef584/download

Logs: https://api.biosimulations.org/logs/6753328e707aa641045ef584?includeOutput=true

View: https://api.biosimulations.org/runs/6753328e707aa641045ef584

HTTP response: 201
| +|
[BIOMD0000000582](https://www.ebi.ac.uk/biomodels/BIOMD0000000582)
DallePezze2014 - Cellular senDallePezze2014 - Cellular senescene-induced mitochondrial dysfunction
|
pass[BIOMD0000000582_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000582#Files)
|pass|
pass[BIOMD0000000582_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000582#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675332a79fa297efdca1bd37/download

Logs: https://api.biosimulations.org/logs/675332a79fa297efdca1bd37?includeOutput=true

View: https://api.biosimulations.org/runs/675332a79fa297efdca1bd37

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675332a59fa297efdca1bd34/download

Logs: https://api.biosimulations.org/logs/675332a59fa297efdca1bd34?includeOutput=true

View: https://api.biosimulations.org/runs/675332a59fa297efdca1bd34

HTTP response: 201
| +|
[BIOMD0000000583](https://www.ebi.ac.uk/biomodels/BIOMD0000000583)
Leber2015 - Mucosal immunity aLeber2015 - Mucosal immunity and gut microbiome interaction during C. difficile infection
|
pass[BIOMD0000000583_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000583#Files)
|pass|
pass[BIOMD0000000583_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000583#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753338cc3054f763d554072/download

Logs: https://api.biosimulations.org/logs/6753338cc3054f763d554072?includeOutput=true

View: https://api.biosimulations.org/runs/6753338cc3054f763d554072

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67533389707aa641045ef5b9/download

Logs: https://api.biosimulations.org/logs/67533389707aa641045ef5b9?includeOutput=true

View: https://api.biosimulations.org/runs/67533389707aa641045ef5b9

HTTP response: 201
| +|
[BIOMD0000000584](https://www.ebi.ac.uk/biomodels/BIOMD0000000584)
Mandlik2015 - Tristable genetiMandlik2015 - Tristable genetic circuit of Leishmania
|
pass[BIOMD0000000584_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000584#Files)
|FAIL|
pass[BIOMD0000000584_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000584#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675333a2707aa641045ef5cb/download

Logs: https://api.biosimulations.org/logs/675333a2707aa641045ef5cb?includeOutput=true

View: https://api.biosimulations.org/runs/675333a2707aa641045ef5cb

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675333a09fa297efdca1bd6f/download

Logs: https://api.biosimulations.org/logs/675333a09fa297efdca1bd6f?includeOutput=true

View: https://api.biosimulations.org/runs/675333a09fa297efdca1bd6f

HTTP response: 201
| +|
[BIOMD0000000585](https://www.ebi.ac.uk/biomodels/BIOMD0000000585)
Rateitschak2012 - Interferon-gRateitschak2012 - Interferon-gamma (IFNγ) induced STAT1 signalling (PC_IFNg100)
|
pass[BIOMD0000000585_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000585#Files)
|FAIL|
MultipleSEDMLs['PC_10.sedml', 'PC_100.sedml', 'PSC_1.sedml', 'PSC_100.sedml', 'README.txt']
|NA|NA|NA|NA| +|
[BIOMD0000000586](https://www.ebi.ac.uk/biomodels/BIOMD0000000586)
Karapetyan2016 - Genetic oscilKarapetyan2016 - Genetic oscillatory network - Activator Titration Circuit (ATC)
|
pass[BIOMD0000000586_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000586#Files)
|pass|
pass[BIOMD0000000586_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000586#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675333b9707aa641045ef5e3/download

Logs: https://api.biosimulations.org/logs/675333b9707aa641045ef5e3?includeOutput=true

View: https://api.biosimulations.org/runs/675333b9707aa641045ef5e3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675333b7707aa641045ef5e0/download

Logs: https://api.biosimulations.org/logs/675333b7707aa641045ef5e0?includeOutput=true

View: https://api.biosimulations.org/runs/675333b7707aa641045ef5e0

HTTP response: 201
| +|
[BIOMD0000000587](https://www.ebi.ac.uk/biomodels/BIOMD0000000587)
Karapetyan2016 - Genetic oscilKarapetyan2016 - Genetic oscillatory network - Repressor Titration Circuit (RTC)
|
pass[BIOMD0000000587_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000587#Files)
|pass|
pass[BIOMD0000000587_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000587#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675333cf707aa641045ef5fa/download

Logs: https://api.biosimulations.org/logs/675333cf707aa641045ef5fa?includeOutput=true

View: https://api.biosimulations.org/runs/675333cf707aa641045ef5fa

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675333cc9fa297efdca1bd9a/download

Logs: https://api.biosimulations.org/logs/675333cc9fa297efdca1bd9a?includeOutput=true

View: https://api.biosimulations.org/runs/675333cc9fa297efdca1bd9a

HTTP response: 201
| +|
[BIOMD0000000588](https://www.ebi.ac.uk/biomodels/BIOMD0000000588)
Benson2013 - Identification ofBenson2013 - Identification of key drug targets in nerve growth factor pathway
|
pass[BIOMD0000000588_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000588#Files)
|FAIL|
pass[BIOMD0000000588_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000588#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675333e69fa297efdca1bdb0/download

Logs: https://api.biosimulations.org/logs/675333e69fa297efdca1bdb0?includeOutput=true

View: https://api.biosimulations.org/runs/675333e69fa297efdca1bdb0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675333e4c3054f763d5540bc/download

Logs: https://api.biosimulations.org/logs/675333e4c3054f763d5540bc?includeOutput=true

View: https://api.biosimulations.org/runs/675333e4c3054f763d5540bc

HTTP response: 201
| +|
[BIOMD0000000589](https://www.ebi.ac.uk/biomodels/BIOMD0000000589)
Valero2016 - Ascorbate-GlutathValero2016 - Ascorbate-Glutathione cycle in chloroplasts under light/dark conditions
|
pass[BIOMD0000000589_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000589#Files)
|pass|
MultipleSEDMLs['BIOMD0000000589_url.sedml', 'Valero et al 2015 ASC-GSH-Fig 10a.sedml', 'Valero et al 2015 ASC-GSH-Fig 10b.sedml', 'Valero et al 2015 ASC-GSH-Fig 4.sedml', 'Valero et al 2015 ASC-GSH-Fig 5.sedml', 'Valero et al 2015 ASC-GSH-Fig 6.sedml', 'Valero et al 2015 ASC-GSH-Fig 7.sedml', 'Valero et al 2015 ASC-GSH-Fig 8.sedml', 'Valero et al 2015 ASC-GSH-Fig 9.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000590](https://www.ebi.ac.uk/biomodels/BIOMD0000000590)
Hermansen2015 - denovo biosyntHermansen2015 - denovo biosynthesis of pyrimidines in yeast
|
pass[BIOMD0000000590_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000590#Files)
|pass|
pass[BIOMD0000000590_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000590#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67533402707aa641045ef61a/download

Logs: https://api.biosimulations.org/logs/67533402707aa641045ef61a?includeOutput=true

View: https://api.biosimulations.org/runs/67533402707aa641045ef61a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675333ff9fa297efdca1bdcb/download

Logs: https://api.biosimulations.org/logs/675333ff9fa297efdca1bdcb?includeOutput=true

View: https://api.biosimulations.org/runs/675333ff9fa297efdca1bdcb

HTTP response: 201
| +|
[BIOMD0000000591](https://www.ebi.ac.uk/biomodels/BIOMD0000000591)
Boehm2014 - isoform-specific dBoehm2014 - isoform-specific dimerization of pSTAT5A and pSTAT5B
|
pass[BIOMD0000000591_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000591#Files)
|pass|
FAIL[Model_Fig5D.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000591#Files)
|pass|
SEDMLfile```failed to validate SEDML file Model_Fig5D.sedml```
|
FAILDownload: https://api.biosimulations.org/results/675334189fa297efdca1bde1/download

Logs: https://api.biosimulations.org/logs/675334189fa297efdca1bde1?includeOutput=true

View: https://api.biosimulations.org/runs/675334189fa297efdca1bde1

HTTP response: 201

Error message: `/root/archive.omex` is not a valid COMBINE/OMEX archive. - The SED-ML file at location `./Model_Fig5D.sedml` is invalid. - Model `model` is invalid. - The model file `Model_Fig5D.xml` is invalid. - `/tmp/tmpt_p2himj/./Model_Fig5D.xml` is not a file.

Exception type: ValueError
|
FAILDownload: https://api.biosimulations.org/results/67533416c3054f763d5540f0/download

Logs: https://api.biosimulations.org/logs/67533416c3054f763d5540f0?includeOutput=true

View: https://api.biosimulations.org/runs/67533416c3054f763d5540f0

HTTP response: 201

Error message: `/root/archive.omex` is not a valid COMBINE/OMEX archive. - The SED-ML file at location `./Model_Fig5D.sedml` is invalid. - Model `model` is invalid. - The model file `Model_Fig5D.xml` is invalid. - `/tmp/tmppf21av03/./Model_Fig5D.xml` is not a file.

Exception type: ValueError
| +|
[BIOMD0000000592](https://www.ebi.ac.uk/biomodels/BIOMD0000000592)
Martinez-Sanchez2015 - T CD4+ Martinez-Sanchez2015 - T CD4+ lymphocyte transcriptional regulatory network
|
pass[BIOMD0000000592_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000592#Files)
|pass|NoSEDML|NA|NA|NA|NA| +|
[BIOMD0000000593](https://www.ebi.ac.uk/biomodels/BIOMD0000000593)
Martinez-Sanchez2015 - T CD4+ Martinez-Sanchez2015 - T CD4+ lymphocyte transcriptional-signaling regulatory network
|
pass[BIOMD0000000593_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000593#Files)
|pass|NoSEDML|NA|NA|NA|NA| +|
[BIOMD0000000594](https://www.ebi.ac.uk/biomodels/BIOMD0000000594)
Capuani2015 - Binding of Cbl aCapuani2015 - Binding of Cbl and Gbr2 to EGFR (Multisite Phosphorylation Model - MPM)
|
pass[BIOMD0000000594_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000594#Files)
|pass|
pass[BIOMD0000000594_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000594#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753342ac3054f763d55410b/download

Logs: https://api.biosimulations.org/logs/6753342ac3054f763d55410b?includeOutput=true

View: https://api.biosimulations.org/runs/6753342ac3054f763d55410b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675334279fa297efdca1be06/download

Logs: https://api.biosimulations.org/logs/675334279fa297efdca1be06?includeOutput=true

View: https://api.biosimulations.org/runs/675334279fa297efdca1be06

HTTP response: 201
| +|
[BIOMD0000000595](https://www.ebi.ac.uk/biomodels/BIOMD0000000595)
Capuani2015 - Binding of Cbl aCapuani2015 - Binding of Cbl and Grb2 to EGFR (Early Activation Model - EAM)
|
pass[BIOMD0000000595_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000595#Files)
|pass|
pass[BIOMD0000000595_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000595#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67533453707aa641045ef66a/download

Logs: https://api.biosimulations.org/logs/67533453707aa641045ef66a?includeOutput=true

View: https://api.biosimulations.org/runs/67533453707aa641045ef66a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753344f9fa297efdca1be1d/download

Logs: https://api.biosimulations.org/logs/6753344f9fa297efdca1be1d?includeOutput=true

View: https://api.biosimulations.org/runs/6753344f9fa297efdca1be1d

HTTP response: 201
| +|
[BIOMD0000000596](https://www.ebi.ac.uk/biomodels/BIOMD0000000596)
Philipson2015 - Innate immune Philipson2015 - Innate immune response modulated by NLRX1
|
pass[Philipson2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000596#Files)
|pass|
pass[Philipson2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000596#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67533493c3054f763d55413f/download

Logs: https://api.biosimulations.org/logs/67533493c3054f763d55413f?includeOutput=true

View: https://api.biosimulations.org/runs/67533493c3054f763d55413f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67533490707aa641045ef684/download

Logs: https://api.biosimulations.org/logs/67533490707aa641045ef684?includeOutput=true

View: https://api.biosimulations.org/runs/67533490707aa641045ef684

HTTP response: 201
| +|
[BIOMD0000000597](https://www.ebi.ac.uk/biomodels/BIOMD0000000597)
Flis2015 - Plant clock gene ciFlis2015 - Plant clock gene circuit (P2011.1.2 PLM_71 ver 1)
|
pass[BIOMD0000000597_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000597#Files)
|pass|
pass[BIOMD0000000597_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000597#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675334a99fa297efdca1be53/download

Logs: https://api.biosimulations.org/logs/675334a99fa297efdca1be53?includeOutput=true

View: https://api.biosimulations.org/runs/675334a99fa297efdca1be53

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675334a69fa297efdca1be50/download

Logs: https://api.biosimulations.org/logs/675334a69fa297efdca1be50?includeOutput=true

View: https://api.biosimulations.org/runs/675334a69fa297efdca1be50

HTTP response: 201
| +|
[BIOMD0000000598](https://www.ebi.ac.uk/biomodels/BIOMD0000000598)
Flis2015 - Plant clock gene ciFlis2015 - Plant clock gene circuit (P2011.2.1 PLM_71 ver 2)
|
pass[BIOMD0000000598_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000598#Files)
|pass|
pass[BIOMD0000000598_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000598#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675334c59fa297efdca1be64/download

Logs: https://api.biosimulations.org/logs/675334c59fa297efdca1be64?includeOutput=true

View: https://api.biosimulations.org/runs/675334c59fa297efdca1be64

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675334c2c3054f763d55416a/download

Logs: https://api.biosimulations.org/logs/675334c2c3054f763d55416a?includeOutput=true

View: https://api.biosimulations.org/runs/675334c2c3054f763d55416a

HTTP response: 201
| +|
[BIOMD0000000599](https://www.ebi.ac.uk/biomodels/BIOMD0000000599)
Coggins2014 - CXCL12 dependentCoggins2014 - CXCL12 dependent recruitment of beta arrestin
|
pass[BIOMD0000000599_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000599#Files)
|pass|
pass[MODEL1408060000.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000599#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675334dd9fa297efdca1be71/download

Logs: https://api.biosimulations.org/logs/675334dd9fa297efdca1be71?includeOutput=true

View: https://api.biosimulations.org/runs/675334dd9fa297efdca1be71

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675334db707aa641045ef6b6/download

Logs: https://api.biosimulations.org/logs/675334db707aa641045ef6b6?includeOutput=true

View: https://api.biosimulations.org/runs/675334db707aa641045ef6b6

HTTP response: 201
| +|
[BIOMD0000000600](https://www.ebi.ac.uk/biomodels/BIOMD0000000600)
Cellière2011 - Plasticity of TCellière2011 - Plasticity of TGF-β Signalling
|
pass[BIOMD0000000600_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000600#Files)
|FAIL|
pass[BIOMD0000000600_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000600#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675334f0707aa641045ef6df/download

Logs: https://api.biosimulations.org/logs/675334f0707aa641045ef6df?includeOutput=true

View: https://api.biosimulations.org/runs/675334f0707aa641045ef6df

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675334eec3054f763d554195/download

Logs: https://api.biosimulations.org/logs/675334eec3054f763d554195?includeOutput=true

View: https://api.biosimulations.org/runs/675334eec3054f763d554195

HTTP response: 201
| +|
[BIOMD0000000601](https://www.ebi.ac.uk/biomodels/BIOMD0000000601)
Rosas2015 - Caffeine-induced lRosas2015 - Caffeine-induced luminal SR calcium changes
|
pass[BIOMD0000000601_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000601#Files)
|pass|NoSEDML|NA|NA|NA|NA| +|[BIOMD0000000603](https://www.ebi.ac.uk/biomodels/BIOMD0000000603)
PetelenzKuehn_osmoadaptation_WT|
pass[BIOMD0000000603_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000603#Files)
|FAIL|
pass[MODEL1204190000.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000603#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67533507707aa641045ef6ed/download

Logs: https://api.biosimulations.org/logs/67533507707aa641045ef6ed?includeOutput=true

View: https://api.biosimulations.org/runs/67533507707aa641045ef6ed

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67533505c3054f763d5541b6/download

Logs: https://api.biosimulations.org/logs/67533505c3054f763d5541b6?includeOutput=true

View: https://api.biosimulations.org/runs/67533505c3054f763d5541b6

HTTP response: 201
| +|
[BIOMD0000000604](https://www.ebi.ac.uk/biomodels/BIOMD0000000604)
PetelenzKuehn_osmoadaptation_pPetelenzKuehn_osmoadaptation_pfk2627D
|
pass[BIOMD0000000604_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000604#Files)
|FAIL|
pass[MODEL1204190001.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000604#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67533521c3054f763d5541cb/download

Logs: https://api.biosimulations.org/logs/67533521c3054f763d5541cb?includeOutput=true

View: https://api.biosimulations.org/runs/67533521c3054f763d5541cb

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753351e707aa641045ef6f9/download

Logs: https://api.biosimulations.org/logs/6753351e707aa641045ef6f9?includeOutput=true

View: https://api.biosimulations.org/runs/6753351e707aa641045ef6f9

HTTP response: 201
| +|[BIOMD0000000605](https://www.ebi.ac.uk/biomodels/BIOMD0000000605)
PetelenzKuehn_osmoadaptation_HOG1att|
pass[BIOMD0000000605_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000605#Files)
|FAIL|
pass[MODEL1204190002.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000605#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675335399fa297efdca1bec9/download

Logs: https://api.biosimulations.org/logs/675335399fa297efdca1bec9?includeOutput=true

View: https://api.biosimulations.org/runs/675335399fa297efdca1bec9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67533536707aa641045ef708/download

Logs: https://api.biosimulations.org/logs/67533536707aa641045ef708?includeOutput=true

View: https://api.biosimulations.org/runs/67533536707aa641045ef708

HTTP response: 201
| +|[BIOMD0000000606](https://www.ebi.ac.uk/biomodels/BIOMD0000000606)
PetelenzKuehn_osmoadaptation_hog1D|
pass[BIOMD0000000606_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000606#Files)
|FAIL|
pass[MODEL1204190003.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000606#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67533551707aa641045ef728/download

Logs: https://api.biosimulations.org/logs/67533551707aa641045ef728?includeOutput=true

View: https://api.biosimulations.org/runs/67533551707aa641045ef728

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753354ec3054f763d5541f5/download

Logs: https://api.biosimulations.org/logs/6753354ec3054f763d5541f5?includeOutput=true

View: https://api.biosimulations.org/runs/6753354ec3054f763d5541f5

HTTP response: 201
| +|[BIOMD0000000607](https://www.ebi.ac.uk/biomodels/BIOMD0000000607)
PetelenzKuehn_osmoadaptation_fps1D1|
pass[BIOMD0000000607_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000607#Files)
|FAIL|
pass[MODEL1204190005.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000607#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6753356c707aa641045ef745/download

Logs: https://api.biosimulations.org/logs/6753356c707aa641045ef745?includeOutput=true

View: https://api.biosimulations.org/runs/6753356c707aa641045ef745

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67533569707aa641045ef740/download

Logs: https://api.biosimulations.org/logs/67533569707aa641045ef740?includeOutput=true

View: https://api.biosimulations.org/runs/67533569707aa641045ef740

HTTP response: 201
| +|
[BIOMD0000000608](https://www.ebi.ac.uk/biomodels/BIOMD0000000608)
Palsson2013 - Fully-integratedPalsson2013 - Fully-integrated immune response model (FIRM)
|
pass[BIOMD0000000608_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000608#Files)
|pass|
pass[BIOMD0000000608_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000608#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675335849fa297efdca1befc/download

Logs: https://api.biosimulations.org/logs/675335849fa297efdca1befc?includeOutput=true

View: https://api.biosimulations.org/runs/675335849fa297efdca1befc

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67533582c3054f763d554218/download

Logs: https://api.biosimulations.org/logs/67533582c3054f763d554218?includeOutput=true

View: https://api.biosimulations.org/runs/67533582c3054f763d554218

HTTP response: 201
| +|
[BIOMD0000000609](https://www.ebi.ac.uk/biomodels/BIOMD0000000609)
Reddyhoff2015 - Acetaminophen Reddyhoff2015 - Acetaminophen metabolism and toxicity
|
pass[BIOMD0000000609_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000609#Files)
|pass|
pass[BIOMD0000000609_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000609#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675335a19fa297efdca1bf15/download

Logs: https://api.biosimulations.org/logs/675335a19fa297efdca1bf15?includeOutput=true

View: https://api.biosimulations.org/runs/675335a19fa297efdca1bf15

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753359f707aa641045ef76a/download

Logs: https://api.biosimulations.org/logs/6753359f707aa641045ef76a?includeOutput=true

View: https://api.biosimulations.org/runs/6753359f707aa641045ef76a

HTTP response: 201
| +|[BIOMD0000000610](https://www.ebi.ac.uk/biomodels/BIOMD0000000610)
PetelenzKuehn_osmoadaptation_gpd1D|
pass[BIOMD0000000610_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000610#Files)
|FAIL|
pass[BIOMD0000000610_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000610#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675335b7707aa641045ef784/download

Logs: https://api.biosimulations.org/logs/675335b7707aa641045ef784?includeOutput=true

View: https://api.biosimulations.org/runs/675335b7707aa641045ef784

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675335b4707aa641045ef781/download

Logs: https://api.biosimulations.org/logs/675335b4707aa641045ef781?includeOutput=true

View: https://api.biosimulations.org/runs/675335b4707aa641045ef781

HTTP response: 201
| +|
[BIOMD0000000611](https://www.ebi.ac.uk/biomodels/BIOMD0000000611)
Nayak2015 - Blood Coagulation Nayak2015 - Blood Coagulation Network - Predicting the Effects of Various Therapies on Biomarkers
|
pass[BIOMD0000000611_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000611#Files)
|pass|
pass[BIOMD0000000611_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000611#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675335cf9fa297efdca1bf33/download

Logs: https://api.biosimulations.org/logs/675335cf9fa297efdca1bf33?includeOutput=true

View: https://api.biosimulations.org/runs/675335cf9fa297efdca1bf33

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675335ccc3054f763d554253/download

Logs: https://api.biosimulations.org/logs/675335ccc3054f763d554253?includeOutput=true

View: https://api.biosimulations.org/runs/675335ccc3054f763d554253

HTTP response: 201
| +|
[BIOMD0000000612](https://www.ebi.ac.uk/biomodels/BIOMD0000000612)
Proctor2016 - Circadian rhythmProctor2016 - Circadian rhythm of PTH and the dynamics of signaling molecules on bone remodeling
|
pass[BIOMD0000000612_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000612#Files)
|pass|
pass[BIOMD0000000612_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000612#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675335e99fa297efdca1bf5e/download

Logs: https://api.biosimulations.org/logs/675335e99fa297efdca1bf5e?includeOutput=true

View: https://api.biosimulations.org/runs/675335e99fa297efdca1bf5e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675335e7c3054f763d55426f/download

Logs: https://api.biosimulations.org/logs/675335e7c3054f763d55426f?includeOutput=true

View: https://api.biosimulations.org/runs/675335e7c3054f763d55426f

HTTP response: 201
| +|
[BIOMD0000000613](https://www.ebi.ac.uk/biomodels/BIOMD0000000613)
Peterson2010 - Integrated calcPeterson2010 - Integrated calcium homeostasis and bone remodelling
|
pass[BIOMD0000000613_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000613#Files)
|pass|
pass[BIOMD0000000613_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000613#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675336049fa297efdca1bf7b/download

Logs: https://api.biosimulations.org/logs/675336049fa297efdca1bf7b?includeOutput=true

View: https://api.biosimulations.org/runs/675336049fa297efdca1bf7b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67533601707aa641045ef7b6/download

Logs: https://api.biosimulations.org/logs/67533601707aa641045ef7b6?includeOutput=true

View: https://api.biosimulations.org/runs/67533601707aa641045ef7b6

HTTP response: 201
| +|
[BIOMD0000000614](https://www.ebi.ac.uk/biomodels/BIOMD0000000614)
Kamihira2000 - calcitonin fibrKamihira2000 - calcitonin fibrillation kinetics
|
pass[BIOMD0000000614_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000614#Files)
|pass|
pass[BIOMD0000000614_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000614#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6753361c9fa297efdca1bf8c/download

Logs: https://api.biosimulations.org/logs/6753361c9fa297efdca1bf8c?includeOutput=true

View: https://api.biosimulations.org/runs/6753361c9fa297efdca1bf8c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753361a9fa297efdca1bf87/download

Logs: https://api.biosimulations.org/logs/6753361a9fa297efdca1bf87?includeOutput=true

View: https://api.biosimulations.org/runs/6753361a9fa297efdca1bf87

HTTP response: 201
| +|
[BIOMD0000000615](https://www.ebi.ac.uk/biomodels/BIOMD0000000615)
Kuznetsov2016(II) - α-syn aggrKuznetsov2016(II) - α-syn aggregation kinetics in Parkinson's Disease
|
pass[BIOMD0000000615_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000615#Files)
|pass|
pass[BIOMD0000000615_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000615#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67533631707aa641045ef7ea/download

Logs: https://api.biosimulations.org/logs/67533631707aa641045ef7ea?includeOutput=true

View: https://api.biosimulations.org/runs/67533631707aa641045ef7ea

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753362f9fa297efdca1bfa3/download

Logs: https://api.biosimulations.org/logs/6753362f9fa297efdca1bfa3?includeOutput=true

View: https://api.biosimulations.org/runs/6753362f9fa297efdca1bfa3

HTTP response: 201
| +|
[BIOMD0000000616](https://www.ebi.ac.uk/biomodels/BIOMD0000000616)
Dunster2014 - WBC InteractionsDunster2014 - WBC Interactions (Model1)
|
pass[BIOMD0000000616_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000616#Files)
|FAIL|
pass[BIOMD0000000616_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000616#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67533645c3054f763d5542af/download

Logs: https://api.biosimulations.org/logs/67533645c3054f763d5542af?includeOutput=true

View: https://api.biosimulations.org/runs/67533645c3054f763d5542af

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67533643707aa641045ef7ef/download

Logs: https://api.biosimulations.org/logs/67533643707aa641045ef7ef?includeOutput=true

View: https://api.biosimulations.org/runs/67533643707aa641045ef7ef

HTTP response: 201
| +|
[BIOMD0000000617](https://www.ebi.ac.uk/biomodels/BIOMD0000000617)
Walsh2014 - Inhibition kineticWalsh2014 - Inhibition kinetics of DAPT on APP Cleavage
|
pass[BIOMD0000000617_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000617#Files)
|pass|
pass[BIOMD0000000617_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000617#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753365a9fa297efdca1bfc4/download

Logs: https://api.biosimulations.org/logs/6753365a9fa297efdca1bfc4?includeOutput=true

View: https://api.biosimulations.org/runs/6753365a9fa297efdca1bfc4

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675336589fa297efdca1bfbe/download

Logs: https://api.biosimulations.org/logs/675336589fa297efdca1bfbe?includeOutput=true

View: https://api.biosimulations.org/runs/675336589fa297efdca1bfbe

HTTP response: 201
| +|
[BIOMD0000000618](https://www.ebi.ac.uk/biomodels/BIOMD0000000618)
Krohn2011 - Cerebral amyloid-βKrohn2011 - Cerebral amyloid-β proteostasis regulated by membrane transport protein ABCC1
|
pass[BIOMD0000000618_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000618#Files)
|pass|
FAIL[BIOMD0000000618.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000618#Files)
|pass|
SEDMLfile```failed to validate SEDML file BIOMD0000000618.sedml```
|
passDownload: https://api.biosimulations.org/results/6753366e9fa297efdca1bfe4/download

Logs: https://api.biosimulations.org/logs/6753366e9fa297efdca1bfe4?includeOutput=true

View: https://api.biosimulations.org/runs/6753366e9fa297efdca1bfe4

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753366c9fa297efdca1bfd5/download

Logs: https://api.biosimulations.org/logs/6753366c9fa297efdca1bfd5?includeOutput=true

View: https://api.biosimulations.org/runs/6753366c9fa297efdca1bfd5

HTTP response: 201
| +|[BIOMD0000000619](https://www.ebi.ac.uk/biomodels/BIOMD0000000619)
Sluka2016 - Acetaminophen PBPK|
pass[BIOMD0000000619_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000619#Files)
|pass|
pass[BIOMD0000000619_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000619#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67533685707aa641045ef854/download

Logs: https://api.biosimulations.org/logs/67533685707aa641045ef854?includeOutput=true

View: https://api.biosimulations.org/runs/67533685707aa641045ef854

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675336829fa297efdca1bffc/download

Logs: https://api.biosimulations.org/logs/675336829fa297efdca1bffc?includeOutput=true

View: https://api.biosimulations.org/runs/675336829fa297efdca1bffc

HTTP response: 201
| +|
[BIOMD0000000620](https://www.ebi.ac.uk/biomodels/BIOMD0000000620)
Palmer2014 - Effect of IL-1β-BPalmer2014 - Effect of IL-1β-Blocking therapies in T2DM - Disease Condition
|
pass[BIOMD0000000620_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000620#Files)
|FAIL|
pass[BIOMD0000000620_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000620#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67533698c3054f763d554329/download

Logs: https://api.biosimulations.org/logs/67533698c3054f763d554329?includeOutput=true

View: https://api.biosimulations.org/runs/67533698c3054f763d554329

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67533696707aa641045ef868/download

Logs: https://api.biosimulations.org/logs/67533696707aa641045ef868?includeOutput=true

View: https://api.biosimulations.org/runs/67533696707aa641045ef868

HTTP response: 201
| +|
[BIOMD0000000621](https://www.ebi.ac.uk/biomodels/BIOMD0000000621)
Palmer2014 - Effect of IL-1β-BPalmer2014 - Effect of IL-1β-Blocking therapies in T2DM - Healthy Condition
|
pass[BIOMD0000000621_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000621#Files)
|FAIL|
pass[BIOMD0000000621_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000621#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675336af707aa641045ef882/download

Logs: https://api.biosimulations.org/logs/675336af707aa641045ef882?includeOutput=true

View: https://api.biosimulations.org/runs/675336af707aa641045ef882

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675336ac707aa641045ef87f/download

Logs: https://api.biosimulations.org/logs/675336ac707aa641045ef87f?includeOutput=true

View: https://api.biosimulations.org/runs/675336ac707aa641045ef87f

HTTP response: 201
| +|
[BIOMD0000000622](https://www.ebi.ac.uk/biomodels/BIOMD0000000622)
NguyenLK2011 - Ubiquitination NguyenLK2011 - Ubiquitination dynamics in Ring1B/Bmi1 system
|
pass[BIOMD0000000622_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000622#Files)
|pass|
pass[NguyenLK2011_High_Free_Bmi1_Levels.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000622#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675336c6707aa641045ef8a2/download

Logs: https://api.biosimulations.org/logs/675336c6707aa641045ef8a2?includeOutput=true

View: https://api.biosimulations.org/runs/675336c6707aa641045ef8a2

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675336c4707aa641045ef89f/download

Logs: https://api.biosimulations.org/logs/675336c4707aa641045ef89f?includeOutput=true

View: https://api.biosimulations.org/runs/675336c4707aa641045ef89f

HTTP response: 201
| +|
[BIOMD0000000623](https://www.ebi.ac.uk/biomodels/BIOMD0000000623)
Orton2009 - Modelling cancerouOrton2009 - Modelling cancerous mutations in the EGFR/ERK pathway - EGF Model
|
pass[BIOMD0000000623_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000623#Files)
|pass|
pass[Orton2009.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000623#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
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passDownload: https://api.biosimulations.org/results/675336db707aa641045ef8b0/download

Logs: https://api.biosimulations.org/logs/675336db707aa641045ef8b0?includeOutput=true

View: https://api.biosimulations.org/runs/675336db707aa641045ef8b0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675336d8c3054f763d554364/download

Logs: https://api.biosimulations.org/logs/675336d8c3054f763d554364?includeOutput=true

View: https://api.biosimulations.org/runs/675336d8c3054f763d554364

HTTP response: 201
| +|[BIOMD0000000624](https://www.ebi.ac.uk/biomodels/BIOMD0000000624)
Sluka2016 - Acetaminophen metabolism|
pass[BIOMD0000000624_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000624#Files)
|pass|
pass[BIOMD0000000624_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000624#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675336f09fa297efdca1c062/download

Logs: https://api.biosimulations.org/logs/675336f09fa297efdca1c062?includeOutput=true

View: https://api.biosimulations.org/runs/675336f09fa297efdca1c062

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675336eec3054f763d554372/download

Logs: https://api.biosimulations.org/logs/675336eec3054f763d554372?includeOutput=true

View: https://api.biosimulations.org/runs/675336eec3054f763d554372

HTTP response: 201
| +|
[BIOMD0000000625](https://www.ebi.ac.uk/biomodels/BIOMD0000000625)
Leber2016 - Expanded model of Leber2016 - Expanded model of Tfh-Tfr differentiation - Helicobacter pylori infection
|
pass[BIOMD0000000625_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000625#Files)
|pass|
pass[BIOMD0000000625_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000625#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675337069fa297efdca1c088/download

Logs: https://api.biosimulations.org/logs/675337069fa297efdca1c088?includeOutput=true

View: https://api.biosimulations.org/runs/675337069fa297efdca1c088

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675337049fa297efdca1c085/download

Logs: https://api.biosimulations.org/logs/675337049fa297efdca1c085?includeOutput=true

View: https://api.biosimulations.org/runs/675337049fa297efdca1c085

HTTP response: 201
| +|
[BIOMD0000000626](https://www.ebi.ac.uk/biomodels/BIOMD0000000626)
Ray2013 - Meiotic initiation iRay2013 - Meiotic initiation in S. cerevisiae
|
pass[BIOMD0000000626_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000626#Files)
|pass|
pass[BIOMD0000000626_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000626#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753371c707aa641045ef8f0/download

Logs: https://api.biosimulations.org/logs/6753371c707aa641045ef8f0?includeOutput=true

View: https://api.biosimulations.org/runs/6753371c707aa641045ef8f0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753371ac3054f763d5543a1/download

Logs: https://api.biosimulations.org/logs/6753371ac3054f763d5543a1?includeOutput=true

View: https://api.biosimulations.org/runs/6753371ac3054f763d5543a1

HTTP response: 201
| +|
[BIOMD0000000627](https://www.ebi.ac.uk/biomodels/BIOMD0000000627)
Winter2017 - Brain Energy MetaWinter2017 - Brain Energy Metabolism with PPP
|
pass[BIOMD0000000627_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000627#Files)
|pass|
pass[BIOMD0000000627.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000627#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67533733707aa641045ef901/download

Logs: https://api.biosimulations.org/logs/67533733707aa641045ef901?includeOutput=true

View: https://api.biosimulations.org/runs/67533733707aa641045ef901

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67533730c3054f763d5543b7/download

Logs: https://api.biosimulations.org/logs/67533730c3054f763d5543b7?includeOutput=true

View: https://api.biosimulations.org/runs/67533730c3054f763d5543b7

HTTP response: 201
| +|
[BIOMD0000000628](https://www.ebi.ac.uk/biomodels/BIOMD0000000628)
Li2012 Calcium mediated synaptLi2012 Calcium mediated synaptic plasticity
|
pass[BIOMD0000000628_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000628#Files)
|pass|
pass[BIOMD0000000628_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000628#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67533757707aa641045ef914/download

Logs: https://api.biosimulations.org/logs/67533757707aa641045ef914?includeOutput=true

View: https://api.biosimulations.org/runs/67533757707aa641045ef914

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67533754707aa641045ef910/download

Logs: https://api.biosimulations.org/logs/67533754707aa641045ef910?includeOutput=true

View: https://api.biosimulations.org/runs/67533754707aa641045ef910

HTTP response: 201
| +|
[BIOMD0000000629](https://www.ebi.ac.uk/biomodels/BIOMD0000000629)
Haffez2017 - RAR interaction wHaffez2017 - RAR interaction with synthetic analogues
|
pass[BIOMD0000000629_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000629#Files)
|pass|
pass[BIOMD0000000629_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000629#Files)
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passDownload: https://api.biosimulations.org/results/675337869fa297efdca1c0de/download

Logs: https://api.biosimulations.org/logs/675337869fa297efdca1c0de?includeOutput=true

View: https://api.biosimulations.org/runs/675337869fa297efdca1c0de

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675337839fa297efdca1c0d9/download

Logs: https://api.biosimulations.org/logs/675337839fa297efdca1c0d9?includeOutput=true

View: https://api.biosimulations.org/runs/675337839fa297efdca1c0d9

HTTP response: 201
| +|
[BIOMD0000000630](https://www.ebi.ac.uk/biomodels/BIOMD0000000630)
Venkatraman2011 - PLS-UPA behaVenkatraman2011 - PLS-UPA behaviour in the presence of substrate competition_1_1_1_1
|
pass[BIOMD0000000630_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000630#Files)
|pass|
pass[BIOMD0000000630_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000630#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6753379b707aa641045ef956/download

Logs: https://api.biosimulations.org/logs/6753379b707aa641045ef956?includeOutput=true

View: https://api.biosimulations.org/runs/6753379b707aa641045ef956

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67533799707aa641045ef953/download

Logs: https://api.biosimulations.org/logs/67533799707aa641045ef953?includeOutput=true

View: https://api.biosimulations.org/runs/67533799707aa641045ef953

HTTP response: 201
| +|[BIOMD0000000631](https://www.ebi.ac.uk/biomodels/BIOMD0000000631)
DeCaluwe2016 - Circadian Clock|
pass[BIOMD0000000631_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000631#Files)
|pass|
pass[BIOMD0000000631_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000631#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675337b09fa297efdca1c106/download

Logs: https://api.biosimulations.org/logs/675337b09fa297efdca1c106?includeOutput=true

View: https://api.biosimulations.org/runs/675337b09fa297efdca1c106

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675337aec3054f763d5543f7/download

Logs: https://api.biosimulations.org/logs/675337aec3054f763d5543f7?includeOutput=true

View: https://api.biosimulations.org/runs/675337aec3054f763d5543f7

HTTP response: 201
| +|
[BIOMD0000000632](https://www.ebi.ac.uk/biomodels/BIOMD0000000632)
Kollarovic2016 - Cell fate decKollarovic2016 - Cell fate decision at G1-S transition
|
pass[BIOMD0000000632_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000632#Files)
|pass|
pass[BIOMD0000000632_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000632#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675337c79fa297efdca1c115/download

Logs: https://api.biosimulations.org/logs/675337c79fa297efdca1c115?includeOutput=true

View: https://api.biosimulations.org/runs/675337c79fa297efdca1c115

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675337c4707aa641045ef97e/download

Logs: https://api.biosimulations.org/logs/675337c4707aa641045ef97e?includeOutput=true

View: https://api.biosimulations.org/runs/675337c4707aa641045ef97e

HTTP response: 201
| +|
[BIOMD0000000633](https://www.ebi.ac.uk/biomodels/BIOMD0000000633)
Bulik2016 - Regulation of hepaBulik2016 - Regulation of hepatic glucose metabolism
|
pass[BIOMD0000000633_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000633#Files)
|FAIL|
pass[BIOMD0000000633_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000633#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675337dd9fa297efdca1c12a/download

Logs: https://api.biosimulations.org/logs/675337dd9fa297efdca1c12a?includeOutput=true

View: https://api.biosimulations.org/runs/675337dd9fa297efdca1c12a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675337dac3054f763d554421/download

Logs: https://api.biosimulations.org/logs/675337dac3054f763d554421?includeOutput=true

View: https://api.biosimulations.org/runs/675337dac3054f763d554421

HTTP response: 201
| +|
[BIOMD0000000634](https://www.ebi.ac.uk/biomodels/BIOMD0000000634)
Proctor2013 - Effect of Aβ immProctor2013 - Effect of Aβ immunisation in Alzheimer's disease (stochastic version)
|
pass[BIOMD0000000634_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000634#Files)
|pass|
pass[BIOMD0000000634_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000634#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675337f8707aa641045ef9a4/download

Logs: https://api.biosimulations.org/logs/675337f8707aa641045ef9a4?includeOutput=true

View: https://api.biosimulations.org/runs/675337f8707aa641045ef9a4

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675337f6c3054f763d55443d/download

Logs: https://api.biosimulations.org/logs/675337f6c3054f763d55443d?includeOutput=true

View: https://api.biosimulations.org/runs/675337f6c3054f763d55443d

HTTP response: 201
| +|
[BIOMD0000000635](https://www.ebi.ac.uk/biomodels/BIOMD0000000635)
Nair2015 - Interaction betweenNair2015 - Interaction between neuromodulators via GPCRs - Effect on cAMP/PKA signaling (D1 Neuron)
|
pass[BIOMD0000000635_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000635#Files)
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pass[BIOMD0000000635_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000635#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67533813c3054f763d554454/download

Logs: https://api.biosimulations.org/logs/67533813c3054f763d554454?includeOutput=true

View: https://api.biosimulations.org/runs/67533813c3054f763d554454

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675338109fa297efdca1c14c/download

Logs: https://api.biosimulations.org/logs/675338109fa297efdca1c14c?includeOutput=true

View: https://api.biosimulations.org/runs/675338109fa297efdca1c14c

HTTP response: 201
| +|
[BIOMD0000000636](https://www.ebi.ac.uk/biomodels/BIOMD0000000636)
Nair2015 - Interaction betweenNair2015 - Interaction between neuromodulators via GPCRs - Effect on cAMP/PKA signaling (D2 Neuron)
|
pass[BIOMD0000000636_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000636#Files)
|pass|
pass[BIOMD0000000636_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000636#Files)
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passDownload: https://api.biosimulations.org/results/6753382e707aa641045ef9d3/download

Logs: https://api.biosimulations.org/logs/6753382e707aa641045ef9d3?includeOutput=true

View: https://api.biosimulations.org/runs/6753382e707aa641045ef9d3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6753382b707aa641045ef9cf/download

Logs: https://api.biosimulations.org/logs/6753382b707aa641045ef9cf?includeOutput=true

View: https://api.biosimulations.org/runs/6753382b707aa641045ef9cf

HTTP response: 201
| +|
[BIOMD0000000637](https://www.ebi.ac.uk/biomodels/BIOMD0000000637)
Bush2016 - Simplified CarrouseBush2016 - Simplified Carrousel model of GPCR
|
pass[BIOMD0000000637_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000637#Files)
|pass|
pass[Bush2016-Simplified-Carrousel-model-of-GPCR.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000637#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67533849c3054f763d55448a/download

Logs: https://api.biosimulations.org/logs/67533849c3054f763d55448a?includeOutput=true

View: https://api.biosimulations.org/runs/67533849c3054f763d55448a

HTTP response: 201
|
FAILDownload: https://api.biosimulations.org/results/67533847707aa641045ef9e2/download

Logs: https://api.biosimulations.org/logs/67533847707aa641045ef9e2?includeOutput=true

View: https://api.biosimulations.org/runs/67533847707aa641045ef9e2

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :Simulation type `` not currently supported

Exception type: CombineArchiveExecutionError
| +|
[BIOMD0000000638](https://www.ebi.ac.uk/biomodels/BIOMD0000000638)
Bush2016 - Extended Carrousel Bush2016 - Extended Carrousel model of GPCR-RGS
|
pass[BIOMD0000000638_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000638#Files)
|pass|
pass[Bush2016-Extended-Carrousel-model-of-GPCR-RGS.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000638#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675338669fa297efdca1c197/download

Logs: https://api.biosimulations.org/logs/675338669fa297efdca1c197?includeOutput=true

View: https://api.biosimulations.org/runs/675338669fa297efdca1c197

HTTP response: 201
|
FAILDownload: https://api.biosimulations.org/results/67533864c3054f763d5544af/download

Logs: https://api.biosimulations.org/logs/67533864c3054f763d5544af?includeOutput=true

View: https://api.biosimulations.org/runs/67533864c3054f763d5544af

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :Simulation type `` not currently supported

Exception type: CombineArchiveExecutionError
| +|
[BIOMD0000000639](https://www.ebi.ac.uk/biomodels/BIOMD0000000639)
Thiaville2016 - Wild type folaThiaville2016 - Wild type folate pathway model with proposed PanB reaction
|
pass[BIOMD0000000639_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000639#Files)
|pass|
pass[BIOMD0000000639_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000639#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67533882c3054f763d5544d5/download

Logs: https://api.biosimulations.org/logs/67533882c3054f763d5544d5?includeOutput=true

View: https://api.biosimulations.org/runs/67533882c3054f763d5544d5

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675338809fa297efdca1c1a2/download

Logs: https://api.biosimulations.org/logs/675338809fa297efdca1c1a2?includeOutput=true

View: https://api.biosimulations.org/runs/675338809fa297efdca1c1a2

HTTP response: 201
| +|
[BIOMD0000000640](https://www.ebi.ac.uk/biomodels/BIOMD0000000640)
DallePezze2016 - Activation ofDallePezze2016 - Activation of AMPK and mTOR by amino acids
|
pass[BIOMD0000000640_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000640#Files)
|pass|
pass[BIOMD0000000640_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000640#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67533897707aa641045efa42/download

Logs: https://api.biosimulations.org/logs/67533897707aa641045efa42?includeOutput=true

View: https://api.biosimulations.org/runs/67533897707aa641045efa42

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67533895c3054f763d55450a/download

Logs: https://api.biosimulations.org/logs/67533895c3054f763d55450a?includeOutput=true

View: https://api.biosimulations.org/runs/67533895c3054f763d55450a

HTTP response: 201
| +|[BIOMD0000000641](https://www.ebi.ac.uk/biomodels/BIOMD0000000641)
Jaiswal2017 - Cell cycle arrest|
pass[BIOMD0000000641_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000641#Files)
|pass|
pass[BIOMD0000000641_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000641#Files)
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passDownload: https://api.biosimulations.org/results/675338b39fa297efdca1c30a/download

Logs: https://api.biosimulations.org/logs/675338b39fa297efdca1c30a?includeOutput=true

View: https://api.biosimulations.org/runs/675338b39fa297efdca1c30a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675338b19fa297efdca1c2db/download

Logs: https://api.biosimulations.org/logs/675338b19fa297efdca1c2db?includeOutput=true

View: https://api.biosimulations.org/runs/675338b19fa297efdca1c2db

HTTP response: 201
| +|
[BIOMD0000000642](https://www.ebi.ac.uk/biomodels/BIOMD0000000642)
Mufudza2012 - Estrogen effect Mufudza2012 - Estrogen effect on the dynamics of breast cancer
|
pass[BIOMD0000000642_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000642#Files)
|pass|
pass[BIOMD0000000642_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000642#Files)
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passDownload: https://api.biosimulations.org/results/675338c89fa297efdca1c3bc/download

Logs: https://api.biosimulations.org/logs/675338c89fa297efdca1c3bc?includeOutput=true

View: https://api.biosimulations.org/runs/675338c89fa297efdca1c3bc

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675338c69fa297efdca1c3b8/download

Logs: https://api.biosimulations.org/logs/675338c69fa297efdca1c3b8?includeOutput=true

View: https://api.biosimulations.org/runs/675338c69fa297efdca1c3b8

HTTP response: 201
| +|
[BIOMD0000000643](https://www.ebi.ac.uk/biomodels/BIOMD0000000643)
Musante2017 - Switching behaviMusante2017 - Switching behaviour of PP2A inhibition by ARPP-16 - mutual inhibitions
|
pass[BIOMD0000000643_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000643#Files)
|pass|
pass[ARPP-16_Layer1_mutualInhibitions.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000643#Files)
|pass|pass|
FAILDownload: https://api.biosimulations.org/results/675338e49fa297efdca1c3c9/download

Logs: https://api.biosimulations.org/logs/675338e49fa297efdca1c3c9?includeOutput=true

View: https://api.biosimulations.org/runs/675338e49fa297efdca1c3c9

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Steady state analysis failed with algorithm `KISAO_0000569` (nleq2): 'Jacobian matrix singular in NLEQ. Failed to converge to steady state. Check if Jacobian matrix is non-invertible or steady state solution does not exist.' - auto_moiety_analysis: True - allow_presimulation: False - presimulation_time: 100.0 - presimulation_times: [0.1, 1.0, 10.0, 100.0, 1000.0, 10000.0] - presimulation_maximum_steps: 100 - allow_approx: False - approx_tolerance: 1e-06 - approx_maximum_steps: 10000 - approx_time: 10000.0 - relative_tolerance: 1e-12 - maximum_iterations: 100 - minimum_damping: 1e-20 - broyden_method: 0 - linearity: 3 Steady state analysis failed with algorithm `KISAO_0000569` (nleq2): 'Jacobian matrix singular in NLEQ. Failed to converge to steady state. Check if Jacobian matrix is non-invertible or steady state solution does not exist.' - auto_moiety_analysis: True - allow_presimulation: False - presimulation_time: 100.0 - presimulation_times: [0.1, 1.0, 10.0, 100.0, 1000.0, 10000.0] - presimulation_maximum_steps: 100 - allow_approx: False - approx_tolerance: 1e-06 - approx_maximum_steps: 10000 - approx_time: 10000.0 - relative_tolerance: 1e-12 - maximum_iterations: 100 - minimum_damping: 1e-20 - broyden_method: 0 - linearity: 3 Steady state analysis failed with algorithm `KISAO_0000569` (nleq2): 'Jacobian matrix singular in NLEQ. Failed to converge to steady state. Check if Jacobian matrix is non-invertible or steady state solution does not exist.' - auto_moiety_analysis: True - allow_presimulation: False - presimulation_time: 100.0 - presimulation_times: [0.1, 1.0, 10.0, 100.0, 1000.0, 10000.0] - presimulation_maximum_steps: 100 - allow_approx: False - approx_tolerance: 1e-06 - approx_maximum_steps: 10000 - approx_time: 10000.0 - relative_tolerance: 1e-12 - maximum_iterations: 100 - minimum_damping: 1e-20 - broyden_method: 0 - linearity: 3

Exception type: CombineArchiveExecutionError
|
FAILDownload: https://api.biosimulations.org/results/675338e1c3054f763d5546f6/download

Logs: https://api.biosimulations.org/logs/675338e1c3054f763d5546f6?includeOutput=true

View: https://api.biosimulations.org/runs/675338e1c3054f763d5546f6

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :Simulation type `` not currently supported

Exception type: CombineArchiveExecutionError
| +|
[BIOMD0000000644](https://www.ebi.ac.uk/biomodels/BIOMD0000000644)
Musante2017 - Switching behaviMusante2017 - Switching behaviour of PP2A inhibition by ARPP-16 - mutual inhibitions and PKA inhibits MAST3
|
pass[BIOMD0000000644_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000644#Files)
|pass|
pass[ARPP-16_Layer1and2_mutualInhibitions_PKAinhibitsMAST3.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000644#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
ERRORDownload: https://api.biosimulations.org/results/6754081b9fa297efdca1d432/download

Logs: https://api.biosimulations.org/logs/6754081b9fa297efdca1d432?includeOutput=true

View: https://api.biosimulations.org/runs/6754081b9fa297efdca1d432

HTTP response: 201

Error message: log_yml key not found

Exception type: KeyError
|
FAILDownload: https://api.biosimulations.org/results/67540819c3054f763d555790/download

Logs: https://api.biosimulations.org/logs/67540819c3054f763d555790?includeOutput=true

View: https://api.biosimulations.org/runs/67540819c3054f763d555790

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :Simulation type `` not currently supported

Exception type: CombineArchiveExecutionError
| +|
[BIOMD0000000645](https://www.ebi.ac.uk/biomodels/BIOMD0000000645)
Musante2017 - Switching behaviMusante2017 - Switching behaviour of PP2A inhibition by ARPP-16 - mutual inhibitions and PKA inhibits MAST3 and dominant negative effect
|
pass[BIOMD0000000645_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000645#Files)
|pass|
pass[ARPP-16_Layer1and2and3_mutualInhibitions_PKAinhibitsMAST3_dominantNegative.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000645#Files)
|pass|pass|
ERRORDownload: https://api.biosimulations.org/results/67540acc9fa297efdca1d4dd/download

Logs: https://api.biosimulations.org/logs/67540acc9fa297efdca1d4dd?includeOutput=true

View: https://api.biosimulations.org/runs/67540acc9fa297efdca1d4dd

HTTP response: 201

Error message: log_yml key not found

Exception type: KeyError
|
FAILDownload: https://api.biosimulations.org/results/67540aca9fa297efdca1d4da/download

Logs: https://api.biosimulations.org/logs/67540aca9fa297efdca1d4da?includeOutput=true

View: https://api.biosimulations.org/runs/67540aca9fa297efdca1d4da

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :Simulation type `` not currently supported

Exception type: CombineArchiveExecutionError
| +|
[BIOMD0000000646](https://www.ebi.ac.uk/biomodels/BIOMD0000000646)
Barr2016 - All-or-nothing G1/SBarr2016 - All-or-nothing G1/S transition
|
pass[BIOMD0000000646_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000646#Files)
|pass|
pass[Barr2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000646#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540d38707aa641045f0fb0/download

Logs: https://api.biosimulations.org/logs/67540d38707aa641045f0fb0?includeOutput=true

View: https://api.biosimulations.org/runs/67540d38707aa641045f0fb0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540d359fa297efdca1d60a/download

Logs: https://api.biosimulations.org/logs/67540d359fa297efdca1d60a?includeOutput=true

View: https://api.biosimulations.org/runs/67540d359fa297efdca1d60a

HTTP response: 201
| +|
[BIOMD0000000647](https://www.ebi.ac.uk/biomodels/BIOMD0000000647)
Kwang2003 - The influence of RKwang2003 - The influence of RKIP on the ERK signaling pathway
|
pass[BIOMD0000000647_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000647#Files)
|pass|
pass[BIOMD0000000647.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000647#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540d50707aa641045f0fc7/download

Logs: https://api.biosimulations.org/logs/67540d50707aa641045f0fc7?includeOutput=true

View: https://api.biosimulations.org/runs/67540d50707aa641045f0fc7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540d4dc3054f763d55595e/download

Logs: https://api.biosimulations.org/logs/67540d4dc3054f763d55595e?includeOutput=true

View: https://api.biosimulations.org/runs/67540d4dc3054f763d55595e

HTTP response: 201
| +|
[BIOMD0000000648](https://www.ebi.ac.uk/biomodels/BIOMD0000000648)
Padala2017- ERK, PI3K/Akt and Padala2017- ERK, PI3K/Akt and Wnt signalling network (normal)
|
pass[BIOMD0000000648_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000648#Files)
|pass|
pass[normal_RS.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000648#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540d669fa297efdca1d642/download

Logs: https://api.biosimulations.org/logs/67540d669fa297efdca1d642?includeOutput=true

View: https://api.biosimulations.org/runs/67540d669fa297efdca1d642

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540d629fa297efdca1d63e/download

Logs: https://api.biosimulations.org/logs/67540d629fa297efdca1d63e?includeOutput=true

View: https://api.biosimulations.org/runs/67540d629fa297efdca1d63e

HTTP response: 201
| +|[BIOMD0000000650](https://www.ebi.ac.uk/biomodels/BIOMD0000000650)
Owen1998 - Tumour treatment model|
pass[BIOMD0000000650_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000650#Files)
|FAIL|
pass[MODEL1708250002_treatment_start10.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000650#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540d7e707aa641045f0ff2/download

Logs: https://api.biosimulations.org/logs/67540d7e707aa641045f0ff2?includeOutput=true

View: https://api.biosimulations.org/runs/67540d7e707aa641045f0ff2

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540d7b9fa297efdca1d65a/download

Logs: https://api.biosimulations.org/logs/67540d7b9fa297efdca1d65a?includeOutput=true

View: https://api.biosimulations.org/runs/67540d7b9fa297efdca1d65a

HTTP response: 201
| +|
[BIOMD0000000651](https://www.ebi.ac.uk/biomodels/BIOMD0000000651)
Nguyen2016 - Feedback regulatiNguyen2016 - Feedback regulation in cell signalling: Lessons for cancer therapeutics
|
pass[BIOMD0000000651_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000651#Files)
|pass|
pass[BIOMD0000000651.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000651#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540d959fa297efdca1d675/download

Logs: https://api.biosimulations.org/logs/67540d959fa297efdca1d675?includeOutput=true

View: https://api.biosimulations.org/runs/67540d959fa297efdca1d675

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540d919fa297efdca1d672/download

Logs: https://api.biosimulations.org/logs/67540d919fa297efdca1d672?includeOutput=true

View: https://api.biosimulations.org/runs/67540d919fa297efdca1d672

HTTP response: 201
| +|
[BIOMD0000000652](https://www.ebi.ac.uk/biomodels/BIOMD0000000652)
Padala2017- ERK, PI3K/Akt and Padala2017- ERK, PI3K/Akt and Wnt signalling network (PI3K mutated)
|
pass[BIOMD0000000652_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000652#Files)
|pass|
pass[BIOMD0000000652_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000652#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67540db2707aa641045f1022/download

Logs: https://api.biosimulations.org/logs/67540db2707aa641045f1022?includeOutput=true

View: https://api.biosimulations.org/runs/67540db2707aa641045f1022

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540dad707aa641045f101e/download

Logs: https://api.biosimulations.org/logs/67540dad707aa641045f101e?includeOutput=true

View: https://api.biosimulations.org/runs/67540dad707aa641045f101e

HTTP response: 201
| +|
[BIOMD0000000653](https://www.ebi.ac.uk/biomodels/BIOMD0000000653)
Padala2017- ERK, PI3K/Akt and Padala2017- ERK, PI3K/Akt and Wnt signalling network (bRaf mutated)
|
pass[BIOMD0000000653_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000653#Files)
|pass|
pass[BIOMD0000000653_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000653#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67540dd09fa297efdca1d6a9/download

Logs: https://api.biosimulations.org/logs/67540dd09fa297efdca1d6a9?includeOutput=true

View: https://api.biosimulations.org/runs/67540dd09fa297efdca1d6a9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540dccc3054f763d555a0b/download

Logs: https://api.biosimulations.org/logs/67540dccc3054f763d555a0b?includeOutput=true

View: https://api.biosimulations.org/runs/67540dccc3054f763d555a0b

HTTP response: 201
| +|
[BIOMD0000000654](https://www.ebi.ac.uk/biomodels/BIOMD0000000654)
Padala2017- ERK, PI3K/Akt and Padala2017- ERK, PI3K/Akt and Wnt signalling network (Ras mutated)
|
pass[BIOMD0000000654_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000654#Files)
|pass|
pass[BIOMD0000000654_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000654#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67540dedc3054f763d555a20/download

Logs: https://api.biosimulations.org/logs/67540dedc3054f763d555a20?includeOutput=true

View: https://api.biosimulations.org/runs/67540dedc3054f763d555a20

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540de99fa297efdca1d6c6/download

Logs: https://api.biosimulations.org/logs/67540de99fa297efdca1d6c6?includeOutput=true

View: https://api.biosimulations.org/runs/67540de99fa297efdca1d6c6

HTTP response: 201
| +|
[BIOMD0000000655](https://www.ebi.ac.uk/biomodels/BIOMD0000000655)
Padala2017- ERK, PI3K/Akt and Padala2017- ERK, PI3K/Akt and Wnt signalling network (PTEN mutation)
|
pass[BIOMD0000000655_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000655#Files)
|pass|
pass[BIOMD0000000655_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000655#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67540e0bc3054f763d555a3c/download

Logs: https://api.biosimulations.org/logs/67540e0bc3054f763d555a3c?includeOutput=true

View: https://api.biosimulations.org/runs/67540e0bc3054f763d555a3c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540e08707aa641045f1086/download

Logs: https://api.biosimulations.org/logs/67540e08707aa641045f1086?includeOutput=true

View: https://api.biosimulations.org/runs/67540e08707aa641045f1086

HTTP response: 201
| +|
[BIOMD0000000656](https://www.ebi.ac.uk/biomodels/BIOMD0000000656)
Padala2017- ERK, PI3K/Akt and Padala2017- ERK, PI3K/Akt and Wnt signalling network (EGFR overexpression)
|
pass[BIOMD0000000656_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000656#Files)
|pass|
pass[BIOMD0000000656_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000656#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67540e2a9fa297efdca1d6f4/download

Logs: https://api.biosimulations.org/logs/67540e2a9fa297efdca1d6f4?includeOutput=true

View: https://api.biosimulations.org/runs/67540e2a9fa297efdca1d6f4

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540e26c3054f763d555a5e/download

Logs: https://api.biosimulations.org/logs/67540e26c3054f763d555a5e?includeOutput=true

View: https://api.biosimulations.org/runs/67540e26c3054f763d555a5e

HTTP response: 201
| +|
[BIOMD0000000657](https://www.ebi.ac.uk/biomodels/BIOMD0000000657)
Araujo2016 - Positive feedbackAraujo2016 - Positive feedback in Cdk1 signalling keeps mitotic duration short and constant
|
pass[BIOMD0000000657.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000657#Files)
|pass|
pass[models.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000657#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540e47c3054f763d555a79/download

Logs: https://api.biosimulations.org/logs/67540e47c3054f763d555a79?includeOutput=true

View: https://api.biosimulations.org/runs/67540e47c3054f763d555a79

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540e43c3054f763d555a73/download

Logs: https://api.biosimulations.org/logs/67540e43c3054f763d555a73?includeOutput=true

View: https://api.biosimulations.org/runs/67540e43c3054f763d555a73

HTTP response: 201
| +|
[BIOMD0000000658](https://www.ebi.ac.uk/biomodels/BIOMD0000000658)
Lee2003 - Roles of APC and AxiLee2003 - Roles of APC and Axin in Wnt Pathway (without regulatory loop)
|
pass[BIOMD0000000658_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000658#Files)
|pass|
pass[MODEL1708310000_edited.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000658#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540e5cc3054f763d555a8e/download

Logs: https://api.biosimulations.org/logs/67540e5cc3054f763d555a8e?includeOutput=true

View: https://api.biosimulations.org/runs/67540e5cc3054f763d555a8e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540e59707aa641045f10d9/download

Logs: https://api.biosimulations.org/logs/67540e59707aa641045f10d9?includeOutput=true

View: https://api.biosimulations.org/runs/67540e59707aa641045f10d9

HTTP response: 201
| +|
[BIOMD0000000659](https://www.ebi.ac.uk/biomodels/BIOMD0000000659)
Cursons2015 - Regulation of ERCursons2015 - Regulation of ERK-MAPK signaling in human epidermis
|
pass[BIOMD0000000659_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000659#Files)
|FAIL|
pass[BIOMD0000000659_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000659#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67540e739fa297efdca1d741/download

Logs: https://api.biosimulations.org/logs/67540e739fa297efdca1d741?includeOutput=true

View: https://api.biosimulations.org/runs/67540e739fa297efdca1d741

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540e70c3054f763d555aae/download

Logs: https://api.biosimulations.org/logs/67540e70c3054f763d555aae?includeOutput=true

View: https://api.biosimulations.org/runs/67540e70c3054f763d555aae

HTTP response: 201
| +|
[BIOMD0000000660](https://www.ebi.ac.uk/biomodels/BIOMD0000000660)
Barr2017 - Dynamics of p21 in Barr2017 - Dynamics of p21 in hTert-RPE1 cells
|
pass[BIOMD0000000660_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000660#Files)
|pass|
pass[MODEL1607210001.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000660#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540e89c3054f763d555acc/download

Logs: https://api.biosimulations.org/logs/67540e89c3054f763d555acc?includeOutput=true

View: https://api.biosimulations.org/runs/67540e89c3054f763d555acc

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540e86c3054f763d555ac9/download

Logs: https://api.biosimulations.org/logs/67540e86c3054f763d555ac9?includeOutput=true

View: https://api.biosimulations.org/runs/67540e86c3054f763d555ac9

HTTP response: 201
| +|
[BIOMD0000000661](https://www.ebi.ac.uk/biomodels/BIOMD0000000661)
Webb2002 - Fas/FasL mediated tWebb2002 - Fas/FasL mediated tumor T-cell interaction
|
pass[BIOMD0000000661_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000661#Files)
|pass|
pass[MODEL1006230046.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000661#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540ea0c3054f763d555ae4/download

Logs: https://api.biosimulations.org/logs/67540ea0c3054f763d555ae4?includeOutput=true

View: https://api.biosimulations.org/runs/67540ea0c3054f763d555ae4

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540e9d707aa641045f1126/download

Logs: https://api.biosimulations.org/logs/67540e9d707aa641045f1126?includeOutput=true

View: https://api.biosimulations.org/runs/67540e9d707aa641045f1126

HTTP response: 201
| +|
[BIOMD0000000662](https://www.ebi.ac.uk/biomodels/BIOMD0000000662)
Moore2004 - Chronic Myeloid LeMoore2004 - Chronic Myeloid Leukemic cells and T-lymphocyte interaction
|
pass[BIOMD0000000662_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000662#Files)
|FAIL|
pass[Moore2004.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000662#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540eb5c3054f763d555afe/download

Logs: https://api.biosimulations.org/logs/67540eb5c3054f763d555afe?includeOutput=true

View: https://api.biosimulations.org/runs/67540eb5c3054f763d555afe

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540eb19fa297efdca1d785/download

Logs: https://api.biosimulations.org/logs/67540eb19fa297efdca1d785?includeOutput=true

View: https://api.biosimulations.org/runs/67540eb19fa297efdca1d785

HTTP response: 201
| +|
[BIOMD0000000663](https://www.ebi.ac.uk/biomodels/BIOMD0000000663)
Wodarz2007 - HIV/CD4 T-cell inWodarz2007 - HIV/CD4 T-cell interaction
|
pass[BIOMD0000000663_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000663#Files)
|pass|
pass[Wodarz2007_model_2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000663#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540ecc9fa297efdca1d7a8/download

Logs: https://api.biosimulations.org/logs/67540ecc9fa297efdca1d7a8?includeOutput=true

View: https://api.biosimulations.org/runs/67540ecc9fa297efdca1d7a8

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540ec89fa297efdca1d7a5/download

Logs: https://api.biosimulations.org/logs/67540ec89fa297efdca1d7a5?includeOutput=true

View: https://api.biosimulations.org/runs/67540ec89fa297efdca1d7a5

HTTP response: 201
| +|
[BIOMD0000000664](https://www.ebi.ac.uk/biomodels/BIOMD0000000664)
Muller2008 - Simplified MAPK aMuller2008 - Simplified MAPK activation Dynamics (Model B)
|
pass[BIOMD0000000664_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000664#Files)
|FAIL|
pass[MODEL8687732743.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000664#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540ee2707aa641045f1194/download

Logs: https://api.biosimulations.org/logs/67540ee2707aa641045f1194?includeOutput=true

View: https://api.biosimulations.org/runs/67540ee2707aa641045f1194

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540edf707aa641045f1191/download

Logs: https://api.biosimulations.org/logs/67540edf707aa641045f1191?includeOutput=true

View: https://api.biosimulations.org/runs/67540edf707aa641045f1191

HTTP response: 201
| +|[BIOMD0000000665](https://www.ebi.ac.uk/biomodels/BIOMD0000000665)
Fallon2000 - Interleukin-2 dynamics|
pass[BIOMD0000000665_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000665#Files)
|FAIL|
pass[MODEL1006230001.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000665#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540ef7707aa641045f11b1/download

Logs: https://api.biosimulations.org/logs/67540ef7707aa641045f11b1?includeOutput=true

View: https://api.biosimulations.org/runs/67540ef7707aa641045f11b1

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540ef4c3054f763d555b3f/download

Logs: https://api.biosimulations.org/logs/67540ef4c3054f763d555b3f?includeOutput=true

View: https://api.biosimulations.org/runs/67540ef4c3054f763d555b3f

HTTP response: 201
| +|
[BIOMD0000000666](https://www.ebi.ac.uk/biomodels/BIOMD0000000666)
Pappalardo2016 - PI3K/AKT and Pappalardo2016 - PI3K/AKT and MAPK Signaling Pathways in Melanoma Cancer
|
pass[BIOMD0000000666_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000666#Files)
|pass|
pass[BIOMD0000000666.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000666#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540f14707aa641045f11cb/download

Logs: https://api.biosimulations.org/logs/67540f14707aa641045f11cb?includeOutput=true

View: https://api.biosimulations.org/runs/67540f14707aa641045f11cb

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540f109fa297efdca1d7ed/download

Logs: https://api.biosimulations.org/logs/67540f109fa297efdca1d7ed?includeOutput=true

View: https://api.biosimulations.org/runs/67540f109fa297efdca1d7ed

HTTP response: 201
| +|[BIOMD0000000667](https://www.ebi.ac.uk/biomodels/BIOMD0000000667)
Hornberg2005 - MAPKsignalling|
pass[BIOMD0000000667_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000667#Files)
|pass|
pass[MODEL0848279215.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000667#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540f2d9fa297efdca1d817/download

Logs: https://api.biosimulations.org/logs/67540f2d9fa297efdca1d817?includeOutput=true

View: https://api.biosimulations.org/runs/67540f2d9fa297efdca1d817

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540f2ac3054f763d555b78/download

Logs: https://api.biosimulations.org/logs/67540f2ac3054f763d555b78?includeOutput=true

View: https://api.biosimulations.org/runs/67540f2ac3054f763d555b78

HTTP response: 201
| +|
[BIOMD0000000668](https://www.ebi.ac.uk/biomodels/BIOMD0000000668)
Zhu2015 - Combined gemcitabineZhu2015 - Combined gemcitabine and birinapant in pancreatic cancer cells - basic PD model
|
pass[BIOMD0000000668_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000668#Files)
|pass|
pass[MODEL1604270000_basic.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000668#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540f44c3054f763d555b9d/download

Logs: https://api.biosimulations.org/logs/67540f44c3054f763d555b9d?includeOutput=true

View: https://api.biosimulations.org/runs/67540f44c3054f763d555b9d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540f41707aa641045f11f6/download

Logs: https://api.biosimulations.org/logs/67540f41707aa641045f11f6?includeOutput=true

View: https://api.biosimulations.org/runs/67540f41707aa641045f11f6

HTTP response: 201
| +|
[BIOMD0000000669](https://www.ebi.ac.uk/biomodels/BIOMD0000000669)
Zhu2015 - Combined gemcitabineZhu2015 - Combined gemcitabine and birinapant in pancreatic cancer cells - mechanistic PD model
|
pass[BIOMD0000000669_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000669#Files)
|pass|
pass[MODEL1604270001_mechanistic.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000669#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540f5fc3054f763d555bcc/download

Logs: https://api.biosimulations.org/logs/67540f5fc3054f763d555bcc?includeOutput=true

View: https://api.biosimulations.org/runs/67540f5fc3054f763d555bcc

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540f5c9fa297efdca1d854/download

Logs: https://api.biosimulations.org/logs/67540f5c9fa297efdca1d854?includeOutput=true

View: https://api.biosimulations.org/runs/67540f5c9fa297efdca1d854

HTTP response: 201
| +|[BIOMD0000000670](https://www.ebi.ac.uk/biomodels/BIOMD0000000670)
Owen1998 - tumour growth model|
pass[BIOMD0000000670_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000670#Files)
|FAIL|
pass[MODEL1708240000.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000670#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540f929fa297efdca1d87c/download

Logs: https://api.biosimulations.org/logs/67540f929fa297efdca1d87c?includeOutput=true

View: https://api.biosimulations.org/runs/67540f929fa297efdca1d87c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540f8f9fa297efdca1d877/download

Logs: https://api.biosimulations.org/logs/67540f8f9fa297efdca1d877?includeOutput=true

View: https://api.biosimulations.org/runs/67540f8f9fa297efdca1d877

HTTP response: 201
| +|
[BIOMD0000000671](https://www.ebi.ac.uk/biomodels/BIOMD0000000671)
Murphy2016 - Differences in prMurphy2016 - Differences in predictions of ODE models of tumor growth
|
pass[BIOMD0000000671_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000671#Files)
|FAIL|
pass[MODEL1708250001.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000671#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540fa69fa297efdca1d88a/download

Logs: https://api.biosimulations.org/logs/67540fa69fa297efdca1d88a?includeOutput=true

View: https://api.biosimulations.org/runs/67540fa69fa297efdca1d88a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540fa3c3054f763d555bfc/download

Logs: https://api.biosimulations.org/logs/67540fa3c3054f763d555bfc?includeOutput=true

View: https://api.biosimulations.org/runs/67540fa3c3054f763d555bfc

HTTP response: 201
| +|[BIOMD0000000672](https://www.ebi.ac.uk/biomodels/BIOMD0000000672)
Brown1997 - Plasma Melatonin Levels|
pass[BIOMD0000000672_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000672#Files)
|pass|
pass[MODEL1006230019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000672#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540fcd707aa641045f128c/download

Logs: https://api.biosimulations.org/logs/67540fcd707aa641045f128c?includeOutput=true

View: https://api.biosimulations.org/runs/67540fcd707aa641045f128c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540fca9fa297efdca1d8b3/download

Logs: https://api.biosimulations.org/logs/67540fca9fa297efdca1d8b3?includeOutput=true

View: https://api.biosimulations.org/runs/67540fca9fa297efdca1d8b3

HTTP response: 201
| +|
[BIOMD0000000673](https://www.ebi.ac.uk/biomodels/BIOMD0000000673)
Lockwood2006 - Alzheimer's DisLockwood2006 - Alzheimer's Disease PBPK model
|
pass[BIOMD0000000673_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000673#Files)
|pass|
pass[MODEL1006230054_edited.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000673#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540fe1c3054f763d555c24/download

Logs: https://api.biosimulations.org/logs/67540fe1c3054f763d555c24?includeOutput=true

View: https://api.biosimulations.org/runs/67540fe1c3054f763d555c24

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540fde9fa297efdca1d8bf/download

Logs: https://api.biosimulations.org/logs/67540fde9fa297efdca1d8bf?includeOutput=true

View: https://api.biosimulations.org/runs/67540fde9fa297efdca1d8bf

HTTP response: 201
| +|
[BIOMD0000000674](https://www.ebi.ac.uk/biomodels/BIOMD0000000674)
Reyes-Palomares2012 - a combinReyes-Palomares2012 - a combined model hepatic polyamine and sulfur aminoacid metabolism - version1
|
pass[BIOMD0000000674_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000674#Files)
|FAIL|
pass[MODEL1305060000_edited.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000674#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67540fff9fa297efdca1d8d7/download

Logs: https://api.biosimulations.org/logs/67540fff9fa297efdca1d8d7?includeOutput=true

View: https://api.biosimulations.org/runs/67540fff9fa297efdca1d8d7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67540ffb707aa641045f12cc/download

Logs: https://api.biosimulations.org/logs/67540ffb707aa641045f12cc?includeOutput=true

View: https://api.biosimulations.org/runs/67540ffb707aa641045f12cc

HTTP response: 201
| +|[BIOMD0000000675](https://www.ebi.ac.uk/biomodels/BIOMD0000000675)
Chen2000_CellCycle|
pass[BIOMD0000000675.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000675#Files)
|pass|
pass[MODEL1006230004.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000675#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541028c3054f763d555c4b/download

Logs: https://api.biosimulations.org/logs/67541028c3054f763d555c4b?includeOutput=true

View: https://api.biosimulations.org/runs/67541028c3054f763d555c4b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541023707aa641045f12e3/download

Logs: https://api.biosimulations.org/logs/67541023707aa641045f12e3?includeOutput=true

View: https://api.biosimulations.org/runs/67541023707aa641045f12e3

HTTP response: 201
| +|
[BIOMD0000000676](https://www.ebi.ac.uk/biomodels/BIOMD0000000676)
Chen2006 - Nitric Oxide ReleasChen2006 - Nitric Oxide Release from Endothelial Cells
|
pass[BIOMD0000000676_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000676#Files)
|pass|
pass[MODEL1006230005.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000676#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754103c9fa297efdca1d8ff/download

Logs: https://api.biosimulations.org/logs/6754103c9fa297efdca1d8ff?includeOutput=true

View: https://api.biosimulations.org/runs/6754103c9fa297efdca1d8ff

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541039c3054f763d555c4f/download

Logs: https://api.biosimulations.org/logs/67541039c3054f763d555c4f?includeOutput=true

View: https://api.biosimulations.org/runs/67541039c3054f763d555c4f

HTTP response: 201
| +|
[BIOMD0000000677](https://www.ebi.ac.uk/biomodels/BIOMD0000000677)
Holmes2006 - Hill's model of mHolmes2006 - Hill's model of muscle contraction
|
pass[BIOMD0000000677_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000677#Files)
|pass|
pass[MODEL1006230007.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000677#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541050c3054f763d555c6b/download

Logs: https://api.biosimulations.org/logs/67541050c3054f763d555c6b?includeOutput=true

View: https://api.biosimulations.org/runs/67541050c3054f763d555c6b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754104d707aa641045f130c/download

Logs: https://api.biosimulations.org/logs/6754104d707aa641045f130c?includeOutput=true

View: https://api.biosimulations.org/runs/6754104d707aa641045f130c

HTTP response: 201
| +|
[BIOMD0000000678](https://www.ebi.ac.uk/biomodels/BIOMD0000000678)
Tomida2003 - Calcium OscillatoTomida2003 - Calcium Oscillatory-induced translocation of nuclear factor of activated T cells
|
pass[BIOMD0000000678_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000678#Files)
|pass|
pass[MODEL0912160005.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000678#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541066707aa641045f1325/download

Logs: https://api.biosimulations.org/logs/67541066707aa641045f1325?includeOutput=true

View: https://api.biosimulations.org/runs/67541066707aa641045f1325

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675410629fa297efdca1d930/download

Logs: https://api.biosimulations.org/logs/675410629fa297efdca1d930?includeOutput=true

View: https://api.biosimulations.org/runs/675410629fa297efdca1d930

HTTP response: 201
| +|
[BIOMD0000000679](https://www.ebi.ac.uk/biomodels/BIOMD0000000679)
Waugh2006 - Diabetic Wound HeaWaugh2006 - Diabetic Wound Healing - Macrophage Dynamics
|
pass[Waugh2006_1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000679#Files)
|FAIL|
pass[Waugh2006_1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000679#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754107c707aa641045f1333/download

Logs: https://api.biosimulations.org/logs/6754107c707aa641045f1333?includeOutput=true

View: https://api.biosimulations.org/runs/6754107c707aa641045f1333

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541079707aa641045f1330/download

Logs: https://api.biosimulations.org/logs/67541079707aa641045f1330?includeOutput=true

View: https://api.biosimulations.org/runs/67541079707aa641045f1330

HTTP response: 201
| +|
[BIOMD0000000680](https://www.ebi.ac.uk/biomodels/BIOMD0000000680)
Waugh2006 - Diabetic Wound HeaWaugh2006 - Diabetic Wound Healing - TGF-B Dynamics
|
pass[BIOMD0000000680_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000680#Files)
|FAIL|
pass[Waugh2006_2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000680#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675410909fa297efdca1d962/download

Logs: https://api.biosimulations.org/logs/675410909fa297efdca1d962?includeOutput=true

View: https://api.biosimulations.org/runs/675410909fa297efdca1d962

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754108dc3054f763d555c9d/download

Logs: https://api.biosimulations.org/logs/6754108dc3054f763d555c9d?includeOutput=true

View: https://api.biosimulations.org/runs/6754108dc3054f763d555c9d

HTTP response: 201
| +|
[BIOMD0000000681](https://www.ebi.ac.uk/biomodels/BIOMD0000000681)
Waugh2006 - Diabetic Wound HeaWaugh2006 - Diabetic Wound Healing - Treated and Untreated Macrophage Dynamics
|
pass[BIOMD0000000681_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000681#Files)
|FAIL|
pass[Waugh2006_3.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000681#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675410a5c3054f763d555cba/download

Logs: https://api.biosimulations.org/logs/675410a5c3054f763d555cba?includeOutput=true

View: https://api.biosimulations.org/runs/675410a5c3054f763d555cba

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675410a2707aa641045f1361/download

Logs: https://api.biosimulations.org/logs/675410a2707aa641045f1361?includeOutput=true

View: https://api.biosimulations.org/runs/675410a2707aa641045f1361

HTTP response: 201
| +|
[BIOMD0000000682](https://www.ebi.ac.uk/biomodels/BIOMD0000000682)
Wierschem2004 - Electrical burWierschem2004 - Electrical bursting activity in Pancreatic Islets
|
pass[BIOMD0000000682_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000682#Files)
|pass|
pass[MODEL1006230006.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000682#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675410ba9fa297efdca1d984/download

Logs: https://api.biosimulations.org/logs/675410ba9fa297efdca1d984?includeOutput=true

View: https://api.biosimulations.org/runs/675410ba9fa297efdca1d984

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675410b8c3054f763d555cce/download

Logs: https://api.biosimulations.org/logs/675410b8c3054f763d555cce?includeOutput=true

View: https://api.biosimulations.org/runs/675410b8c3054f763d555cce

HTTP response: 201
| +|[BIOMD0000000683](https://www.ebi.ac.uk/biomodels/BIOMD0000000683)
Wodarz1999 CTL memory response HIV|
pass[BIOMD0000000683.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000683#Files)
|pass|
pass[BIOMD0000000683.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000683#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675410cec3054f763d555ce7/download

Logs: https://api.biosimulations.org/logs/675410cec3054f763d555ce7?includeOutput=true

View: https://api.biosimulations.org/runs/675410cec3054f763d555ce7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675410cc707aa641045f138a/download

Logs: https://api.biosimulations.org/logs/675410cc707aa641045f138a?includeOutput=true

View: https://api.biosimulations.org/runs/675410cc707aa641045f138a

HTTP response: 201
| +|[BIOMD0000000684](https://www.ebi.ac.uk/biomodels/BIOMD0000000684)
Wodarz2003 - Immunological Memory|
pass[BIOMD0000000684_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000684#Files)
|pass|
pass[MODEL1006230061.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000684#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675410e5707aa641045f13a7/download

Logs: https://api.biosimulations.org/logs/675410e5707aa641045f13a7?includeOutput=true

View: https://api.biosimulations.org/runs/675410e5707aa641045f13a7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675410e29fa297efdca1d9a5/download

Logs: https://api.biosimulations.org/logs/675410e29fa297efdca1d9a5?includeOutput=true

View: https://api.biosimulations.org/runs/675410e29fa297efdca1d9a5

HTTP response: 201
| +|
[BIOMD0000000685](https://www.ebi.ac.uk/biomodels/BIOMD0000000685)
Wodarz2003 - Cytotoxic T lymphWodarz2003 - Cytotoxic T lymphocyte cross-priming
|
pass[BIOMD0000000685_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000685#Files)
|pass|
pass[MODEL1006230094.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000685#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675410fd9fa297efdca1d9b5/download

Logs: https://api.biosimulations.org/logs/675410fd9fa297efdca1d9b5?includeOutput=true

View: https://api.biosimulations.org/runs/675410fd9fa297efdca1d9b5

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675410f9c3054f763d555d04/download

Logs: https://api.biosimulations.org/logs/675410f9c3054f763d555d04?includeOutput=true

View: https://api.biosimulations.org/runs/675410f9c3054f763d555d04

HTTP response: 201
| +|
[BIOMD0000000686](https://www.ebi.ac.uk/biomodels/BIOMD0000000686)
Wodarz2007 - Basic Model of CyWodarz2007 - Basic Model of Cytomegalovirus Infection
|
pass[BIOMD0000000686_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000686#Files)
|pass|
pass[BIOMD0000000686_url.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000686#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541111c3054f763d555d1f/download

Logs: https://api.biosimulations.org/logs/67541111c3054f763d555d1f?includeOutput=true

View: https://api.biosimulations.org/runs/67541111c3054f763d555d1f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754110f9fa297efdca1d9ce/download

Logs: https://api.biosimulations.org/logs/6754110f9fa297efdca1d9ce?includeOutput=true

View: https://api.biosimulations.org/runs/6754110f9fa297efdca1d9ce

HTTP response: 201
| +|
[BIOMD0000000687](https://www.ebi.ac.uk/biomodels/BIOMD0000000687)
Wodarz2007 - Cytomegalovirus iWodarz2007 - Cytomegalovirus infection model with cytotoxic T lymphocyte response
|
pass[BIOMD0000000687_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000687#Files)
|pass|
pass[MODEL1006230052.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000687#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541128707aa641045f13e5/download

Logs: https://api.biosimulations.org/logs/67541128707aa641045f13e5?includeOutput=true

View: https://api.biosimulations.org/runs/67541128707aa641045f13e5

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675411249fa297efdca1d9e1/download

Logs: https://api.biosimulations.org/logs/675411249fa297efdca1d9e1?includeOutput=true

View: https://api.biosimulations.org/runs/675411249fa297efdca1d9e1

HTTP response: 201
| +|
[BIOMD0000000688](https://www.ebi.ac.uk/biomodels/BIOMD0000000688)
Wodarz2007 - Cytomegalovirus iWodarz2007 - Cytomegalovirus infection model with cytotoxic T lymphocyte and natural killer cell response
|
pass[BIOMD0000000688_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000688#Files)
|pass|
pass[MODEL1006230097.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000688#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541140707aa641045f13fd/download

Logs: https://api.biosimulations.org/logs/67541140707aa641045f13fd?includeOutput=true

View: https://api.biosimulations.org/runs/67541140707aa641045f13fd

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754113dc3054f763d555d49/download

Logs: https://api.biosimulations.org/logs/6754113dc3054f763d555d49?includeOutput=true

View: https://api.biosimulations.org/runs/6754113dc3054f763d555d49

HTTP response: 201
| +|
[BIOMD0000000689](https://www.ebi.ac.uk/biomodels/BIOMD0000000689)
Thiaville2016 - Folate pathwayThiaville2016 - Folate pathway model (PanB overexpression)
|
pass[BIOMD0000000689_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000689#Files)
|pass|
pass[MODEL1602280002.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000689#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541156707aa641045f1413/download

Logs: https://api.biosimulations.org/logs/67541156707aa641045f1413?includeOutput=true

View: https://api.biosimulations.org/runs/67541156707aa641045f1413

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541153c3054f763d555d59/download

Logs: https://api.biosimulations.org/logs/67541153c3054f763d555d59?includeOutput=true

View: https://api.biosimulations.org/runs/67541153c3054f763d555d59

HTTP response: 201
| +|
[BIOMD0000000690](https://www.ebi.ac.uk/biomodels/BIOMD0000000690)
Thiaville2016 - Folate pathwayThiaville2016 - Folate pathway model (PanB overexpression and THF regulation)
|
pass[BIOMD0000000690_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000690#Files)
|pass|
pass[MODEL1602280003.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000690#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754116d707aa641045f1423/download

Logs: https://api.biosimulations.org/logs/6754116d707aa641045f1423?includeOutput=true

View: https://api.biosimulations.org/runs/6754116d707aa641045f1423

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754116a9fa297efdca1da26/download

Logs: https://api.biosimulations.org/logs/6754116a9fa297efdca1da26?includeOutput=true

View: https://api.biosimulations.org/runs/6754116a9fa297efdca1da26

HTTP response: 201
| +|
[BIOMD0000000691](https://www.ebi.ac.uk/biomodels/BIOMD0000000691)
Wolf2000 - Cellular interactioWolf2000 - Cellular interaction on glycolytic oscillations in yeast
|
pass[BIOMD0000000691_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000691#Files)
|pass|
pass[MODEL1006230022.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000691#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541183707aa641045f1431/download

Logs: https://api.biosimulations.org/logs/67541183707aa641045f1431?includeOutput=true

View: https://api.biosimulations.org/runs/67541183707aa641045f1431

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541180707aa641045f142e/download

Logs: https://api.biosimulations.org/logs/67541180707aa641045f142e?includeOutput=true

View: https://api.biosimulations.org/runs/67541180707aa641045f142e

HTTP response: 201
| +|
[BIOMD0000000692](https://www.ebi.ac.uk/biomodels/BIOMD0000000692)
Phillips2003 - The Mechanism oPhillips2003 - The Mechanism of Ras GTPase Activation by Neurofibromin
|
pass[BIOMD0000000692_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000692#Files)
|pass|
pass[MODEL4968912141.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000692#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541199c3054f763d555da2/download

Logs: https://api.biosimulations.org/logs/67541199c3054f763d555da2?includeOutput=true

View: https://api.biosimulations.org/runs/67541199c3054f763d555da2

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541196707aa641045f1449/download

Logs: https://api.biosimulations.org/logs/67541196707aa641045f1449?includeOutput=true

View: https://api.biosimulations.org/runs/67541196707aa641045f1449

HTTP response: 201
| +|
[BIOMD0000000693](https://www.ebi.ac.uk/biomodels/BIOMD0000000693)
Wang2008 - Mimicking the inhibWang2008 - Mimicking the inhibitory effect of riluzole on membrane conductance in skeletal fibres
|
pass[BIOMD0000000693_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000693#Files)
|FAIL|
pass[MODEL7817907010.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000693#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675411b09fa297efdca1da60/download

Logs: https://api.biosimulations.org/logs/675411b09fa297efdca1da60?includeOutput=true

View: https://api.biosimulations.org/runs/675411b09fa297efdca1da60

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675411ac9fa297efdca1da5d/download

Logs: https://api.biosimulations.org/logs/675411ac9fa297efdca1da5d?includeOutput=true

View: https://api.biosimulations.org/runs/675411ac9fa297efdca1da5d

HTTP response: 201
| +|
[BIOMD0000000695](https://www.ebi.ac.uk/biomodels/BIOMD0000000695)
FelixGarza2017 - Blue Light TrFelixGarza2017 - Blue Light Treatment of Psoriasis (simplified)
|
pass[BIOMD0000000695_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000695#Files)
|pass|
pass[MODEL1701090001.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000695#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675411c6c3054f763d555dc3/download

Logs: https://api.biosimulations.org/logs/675411c6c3054f763d555dc3?includeOutput=true

View: https://api.biosimulations.org/runs/675411c6c3054f763d555dc3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675411c3707aa641045f147f/download

Logs: https://api.biosimulations.org/logs/675411c3707aa641045f147f?includeOutput=true

View: https://api.biosimulations.org/runs/675411c3707aa641045f147f

HTTP response: 201
| +|
[BIOMD0000000696](https://www.ebi.ac.uk/biomodels/BIOMD0000000696)
Boada2016 - Incoherent type 1 Boada2016 - Incoherent type 1 feed-forward loop (I1-FFL)
|
pass[BIOMD0000000696_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000696#Files)
|pass|
pass[MODEL1511290000.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000696#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
FAILDownload: https://api.biosimulations.org/results/675411de707aa641045f1495/download

Logs: https://api.biosimulations.org/logs/675411de707aa641045f1495?includeOutput=true

View: https://api.biosimulations.org/runs/675411de707aa641045f1495

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: CVODE Error: CV_CONV_FAILURE: Convergence test failures occurred too many times (= MXNCF = 10) during one internal timestep or occurred with |h| = hmin.; In virtual double rr::CVODEIntegrator::integrate(double, double) CVODE Error: CV_CONV_FAILURE: Convergence test failures occurred too many times (= MXNCF = 10) during one internal timestep or occurred with |h| = hmin.; In virtual double rr::CVODEIntegrator::integrate(double, double) CVODE Error: CV_CONV_FAILURE: Convergence test failures occurred too many times (= MXNCF = 10) during one internal timestep or occurred with |h| = hmin.; In virtual double rr::CVODEIntegrator::integrate(double, double)

Exception type: CombineArchiveExecutionError
|
passDownload: https://api.biosimulations.org/results/675411db9fa297efdca1da7b/download

Logs: https://api.biosimulations.org/logs/675411db9fa297efdca1da7b?includeOutput=true

View: https://api.biosimulations.org/runs/675411db9fa297efdca1da7b

HTTP response: 201
| +|
[BIOMD0000000697](https://www.ebi.ac.uk/biomodels/BIOMD0000000697)
Ciliberto2003 - CyclinE / Cdk2Ciliberto2003 - CyclinE / Cdk2 timer in the cell cycle of Xenopus laevis embryo
|
pass[BIOMD0000000697_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000697#Files)
|FAIL|
MultipleSEDMLs['MODEL0913242281_fig5.sedml', 'MODEL0913242281_fig6.sedml']
|NA|NA|NA|NA| +|[BIOMD0000000698](https://www.ebi.ac.uk/biomodels/BIOMD0000000698)
Reed2004 - Methionine Cycle|
pass[BIOMD0000000698_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000698#Files)
|pass|
pass[MODEL1006230091.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000698#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675411fcc3054f763d555df5/download

Logs: https://api.biosimulations.org/logs/675411fcc3054f763d555df5?includeOutput=true

View: https://api.biosimulations.org/runs/675411fcc3054f763d555df5

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675411f79fa297efdca1da93/download

Logs: https://api.biosimulations.org/logs/675411f79fa297efdca1da93?includeOutput=true

View: https://api.biosimulations.org/runs/675411f79fa297efdca1da93

HTTP response: 201
| +|
[BIOMD0000000699](https://www.ebi.ac.uk/biomodels/BIOMD0000000699)
Caydasi2012 - Regulation of TeCaydasi2012 - Regulation of Tem1 by the GAP complex in spindle position cell cycle checkpoint - Ubiquitous association model
|
pass[BIOMD0000000699_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000699#Files)
|FAIL|
pass[MODEL1202090002_Fig5 i.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000699#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675412139fa297efdca1dabc/download

Logs: https://api.biosimulations.org/logs/675412139fa297efdca1dabc?includeOutput=true

View: https://api.biosimulations.org/runs/675412139fa297efdca1dabc

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541210707aa641045f14bc/download

Logs: https://api.biosimulations.org/logs/67541210707aa641045f14bc?includeOutput=true

View: https://api.biosimulations.org/runs/67541210707aa641045f14bc

HTTP response: 201
| +|
[BIOMD0000000700](https://www.ebi.ac.uk/biomodels/BIOMD0000000700)
Heldt2018 - Proliferation-quieHeldt2018 - Proliferation-quiescence decision in response to DNA damage
|
pass[BIOMD0000000700_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000700#Files)
|pass|
pass[figure1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000700#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754122a9fa297efdca1dad7/download

Logs: https://api.biosimulations.org/logs/6754122a9fa297efdca1dad7?includeOutput=true

View: https://api.biosimulations.org/runs/6754122a9fa297efdca1dad7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541227c3054f763d555e35/download

Logs: https://api.biosimulations.org/logs/67541227c3054f763d555e35?includeOutput=true

View: https://api.biosimulations.org/runs/67541227c3054f763d555e35

HTTP response: 201
| +|
[BIOMD0000000701](https://www.ebi.ac.uk/biomodels/BIOMD0000000701)
Caydasi2012 - Inhibition of TeCaydasi2012 - Inhibition of Tem1 by the GAP complex in Spindle Position Checkpoint
|
pass[MODEL1202090001_FINAL.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000701#Files)
|FAIL|
pass[MODEL1202090001_FINAL.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000701#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754123f707aa641045f14ec/download

Logs: https://api.biosimulations.org/logs/6754123f707aa641045f14ec?includeOutput=true

View: https://api.biosimulations.org/runs/6754123f707aa641045f14ec

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754123b707aa641045f14e8/download

Logs: https://api.biosimulations.org/logs/6754123b707aa641045f14e8?includeOutput=true

View: https://api.biosimulations.org/runs/6754123b707aa641045f14e8

HTTP response: 201
| +|
[BIOMD0000000702](https://www.ebi.ac.uk/biomodels/BIOMD0000000702)
Caydasi2012 - Regulation of TeCaydasi2012 - Regulation of Tem1 by the GAP complex in Spindle Position Checkpoint - Ubiquitous inactive model
|
pass[BIOMD0000000702_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000702#Files)
|FAIL|
pass[MODEL1202090003_Fig5 iii.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000702#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541256c3054f763d555e61/download

Logs: https://api.biosimulations.org/logs/67541256c3054f763d555e61?includeOutput=true

View: https://api.biosimulations.org/runs/67541256c3054f763d555e61

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541253c3054f763d555e5e/download

Logs: https://api.biosimulations.org/logs/67541253c3054f763d555e5e?includeOutput=true

View: https://api.biosimulations.org/runs/67541253c3054f763d555e5e

HTTP response: 201
| +|
[BIOMD0000000703](https://www.ebi.ac.uk/biomodels/BIOMD0000000703)
Diedrichs2018 - A data-entrainDiedrichs2018 - A data-entrained computational model for testing the regulatory logic of the vertebrate unfolded protein response
|
pass[BIOMD0000000703_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000703#Files)
|FAIL|
pass[Diedrichs2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000703#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754126fc3054f763d555e6e/download

Logs: https://api.biosimulations.org/logs/6754126fc3054f763d555e6e?includeOutput=true

View: https://api.biosimulations.org/runs/6754126fc3054f763d555e6e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754126b9fa297efdca1db0a/download

Logs: https://api.biosimulations.org/logs/6754126b9fa297efdca1db0a?includeOutput=true

View: https://api.biosimulations.org/runs/6754126b9fa297efdca1db0a

HTTP response: 201
| +|[BIOMD0000000704](https://www.ebi.ac.uk/biomodels/BIOMD0000000704)
Aguda1999 - G2 DNA damage checkpoint|
pass[BIOMD0000000704_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000704#Files)
|pass|
pass[Figure8.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000704#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541286c3054f763d555e85/download

Logs: https://api.biosimulations.org/logs/67541286c3054f763d555e85?includeOutput=true

View: https://api.biosimulations.org/runs/67541286c3054f763d555e85

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675412829fa297efdca1db29/download

Logs: https://api.biosimulations.org/logs/675412829fa297efdca1db29?includeOutput=true

View: https://api.biosimulations.org/runs/675412829fa297efdca1db29

HTTP response: 201
| +|
[BIOMD0000000705](https://www.ebi.ac.uk/biomodels/BIOMD0000000705)
Smith2010 - Response of FOXO TSmith2010 - Response of FOXO Transcription Factors to Post-Translational Modifications Made by Ageing-Related Signalling Pathways
|
pass[BIOMD0000000705_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000705#Files)
|pass|
MultipleSEDMLs['Smith2010_figure_4C_blue_curve.sedml', 'Smith2010_figure_4C_red_curve.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000706](https://www.ebi.ac.uk/biomodels/BIOMD0000000706)
Smith2010 - Response of FOXO TSmith2010 - Response of FOXO Transcription Factors to Post-Translational Modifications (with acetylation pathway)
|
pass[BIOMD0000000706_url.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000706#Files)
|pass|
MultipleSEDMLs['Smith2010_figure_4D_blue_curve.sedml', 'Smith2010_figure_4D_red_curve.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000707](https://www.ebi.ac.uk/biomodels/BIOMD0000000707)
Revilla2003 - Controlling HIV Revilla2003 - Controlling HIV infection using recombinant viruses
|
pass[MODEL1006230047.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000707#Files)
|pass|
pass[MODEL1006230047_curated_annotated.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000707#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675412a1707aa641045f1541/download

Logs: https://api.biosimulations.org/logs/675412a1707aa641045f1541?includeOutput=true

View: https://api.biosimulations.org/runs/675412a1707aa641045f1541

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754129ec3054f763d555e97/download

Logs: https://api.biosimulations.org/logs/6754129ec3054f763d555e97?includeOutput=true

View: https://api.biosimulations.org/runs/6754129ec3054f763d555e97

HTTP response: 201
| +|
[BIOMD0000000708](https://www.ebi.ac.uk/biomodels/BIOMD0000000708)
Liu2017 - Dynamics of Avian InLiu2017 - Dynamics of Avian Influenza with Logistic Growth
|
pass[Liu2017 - Dynamics of Avian Influenza with Logistic Growth.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000708#Files)
|pass|
pass[Liu2017 - Dynamics of Avian Influenza with Logistic Growth.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000708#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675412b6c3054f763d555eb1/download

Logs: https://api.biosimulations.org/logs/675412b6c3054f763d555eb1?includeOutput=true

View: https://api.biosimulations.org/runs/675412b6c3054f763d555eb1

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675412b39fa297efdca1db4f/download

Logs: https://api.biosimulations.org/logs/675412b39fa297efdca1db4f?includeOutput=true

View: https://api.biosimulations.org/runs/675412b39fa297efdca1db4f

HTTP response: 201
| +|
[BIOMD0000000709](https://www.ebi.ac.uk/biomodels/BIOMD0000000709)
Liu2017 - Dynamics of Avian InLiu2017 - Dynamics of Avian Influenza with Allee Growth Effect
|
pass[Liu2017 - Dynamics of Avian Influenza with Allee Growth Effect.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000709#Files)
|pass|
MultipleSEDMLs['4C_Reactions.sedml', 'Liu2017 - Dynamics of Avian Influenza with Allee Growth Effect.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000710](https://www.ebi.ac.uk/biomodels/BIOMD0000000710)
Hernandez-Vargas2012 - Innate Hernandez-Vargas2012 - Innate immune system dynamics to Influenza virus
|
pass[Hernandez-Vargas2012 - Innate immune system dynamics to Influenza virus.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000710#Files)
|pass|
pass[Innate Immune System Dynamics to Influenza Virus.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000710#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675412cc707aa641045f155b/download

Logs: https://api.biosimulations.org/logs/675412cc707aa641045f155b?includeOutput=true

View: https://api.biosimulations.org/runs/675412cc707aa641045f155b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675412c9c3054f763d555ec4/download

Logs: https://api.biosimulations.org/logs/675412c9c3054f763d555ec4?includeOutput=true

View: https://api.biosimulations.org/runs/675412c9c3054f763d555ec4

HTTP response: 201
| +|
[BIOMD0000000711](https://www.ebi.ac.uk/biomodels/BIOMD0000000711)
Hancioglu2007 - Human Immune RHancioglu2007 - Human Immune Response to Influenza A virus Infection
|
pass[Hancioglu2007 - Human Immune Response to Influenza A virus.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000711#Files)
|pass|
pass[Hancioglu2007 - Human Immune Response to Influenza A virus.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000711#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675412e2707aa641045f1572/download

Logs: https://api.biosimulations.org/logs/675412e2707aa641045f1572?includeOutput=true

View: https://api.biosimulations.org/runs/675412e2707aa641045f1572

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675412df707aa641045f156f/download

Logs: https://api.biosimulations.org/logs/675412df707aa641045f156f?includeOutput=true

View: https://api.biosimulations.org/runs/675412df707aa641045f156f

HTTP response: 201
| +|
[BIOMD0000000712](https://www.ebi.ac.uk/biomodels/BIOMD0000000712)
Manchanda2014 - Effect on ImmuManchanda2014 - Effect on Immune System by 4 different Influenza A virus strains
|
pass[Jena5258.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000712#Files)
|pass|
MultipleSEDMLs['Bakum1832.sedml', 'Jena2688.sedml', 'Jena5258.sedml', 'Jena5555.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000712](https://www.ebi.ac.uk/biomodels/BIOMD0000000712)
Manchanda2014 - Effect on ImmuManchanda2014 - Effect on Immune System by 4 different Influenza A virus strains
|
pass[Jena5258.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000712#Files)
|pass|
MultipleSEDMLs['Bakum1832.sedml', 'Jena2688.sedml', 'Jena5258.sedml', 'Jena5555.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000713](https://www.ebi.ac.uk/biomodels/BIOMD0000000713)
Aston2018 - Dynamics of HepatiAston2018 - Dynamics of Hepatitis C Infection
|
pass[PVR.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000713#Files)
|pass|
MultipleSEDMLs['Breakthrough.sedml', 'NullResponse.sedml', 'PVR.sedml', 'Triphasic.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000713](https://www.ebi.ac.uk/biomodels/BIOMD0000000713)
Aston2018 - Dynamics of HepatiAston2018 - Dynamics of Hepatitis C Infection
|
pass[PVR.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000713#Files)
|pass|
MultipleSEDMLs['Breakthrough.sedml', 'NullResponse.sedml', 'PVR.sedml', 'Triphasic.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000714](https://www.ebi.ac.uk/biomodels/BIOMD0000000714)
Reynolds2006 - Reduced model oReynolds2006 - Reduced model of the acute inflammatory response
|
pass[HealthyOutcome.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000714#Files)
|pass|
MultipleSEDMLs['AsepticDeath.sedml', 'HealthyOutcome.sedml', 'SepticDeath.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000714](https://www.ebi.ac.uk/biomodels/BIOMD0000000714)
Reynolds2006 - Reduced model oReynolds2006 - Reduced model of the acute inflammatory response
|
pass[HealthyOutcome.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000714#Files)
|pass|
MultipleSEDMLs['AsepticDeath.sedml', 'HealthyOutcome.sedml', 'SepticDeath.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000715](https://www.ebi.ac.uk/biomodels/BIOMD0000000715)
Huo2017 - SEIS epidemic model Huo2017 - SEIS epidemic model with the impact of media
|
pass[Epidemic Model with the impact of Media Reactions.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000715#Files)
|pass|
pass[Epidemic Model with the impact of Media Reactions.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000715#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675412f8c3054f763d555ef7/download

Logs: https://api.biosimulations.org/logs/675412f8c3054f763d555ef7?includeOutput=true

View: https://api.biosimulations.org/runs/675412f8c3054f763d555ef7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675412f5c3054f763d555ef4/download

Logs: https://api.biosimulations.org/logs/675412f5c3054f763d555ef4?includeOutput=true

View: https://api.biosimulations.org/runs/675412f5c3054f763d555ef4

HTTP response: 201
| +|
[BIOMD0000000716](https://www.ebi.ac.uk/biomodels/BIOMD0000000716)
Lee2018 - Avian human bilinearLee2018 - Avian human bilinear incidence (BI) model
|
pass[BI reactions.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000716#Files)
|pass|
pass[BI reactions.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000716#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754130f9fa297efdca1db98/download

Logs: https://api.biosimulations.org/logs/6754130f9fa297efdca1db98?includeOutput=true

View: https://api.biosimulations.org/runs/6754130f9fa297efdca1db98

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754130cc3054f763d555f08/download

Logs: https://api.biosimulations.org/logs/6754130cc3054f763d555f08?includeOutput=true

View: https://api.biosimulations.org/runs/6754130cc3054f763d555f08

HTTP response: 201
| +|
[BIOMD0000000717](https://www.ebi.ac.uk/biomodels/BIOMD0000000717)
Lee2018 - Avian human half-satLee2018 - Avian human half-saturated incidence (HSI) model
|
pass[HSI reactions.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000717#Files)
|pass|
pass[HSI reactions.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000717#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541325707aa641045f15b6/download

Logs: https://api.biosimulations.org/logs/67541325707aa641045f15b6?includeOutput=true

View: https://api.biosimulations.org/runs/67541325707aa641045f15b6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541322707aa641045f15b3/download

Logs: https://api.biosimulations.org/logs/67541322707aa641045f15b3?includeOutput=true

View: https://api.biosimulations.org/runs/67541322707aa641045f15b3

HTTP response: 201
| +|[BIOMD0000000718](https://www.ebi.ac.uk/biomodels/BIOMD0000000718)
Li2008 - Caulobacter Cell Cycle|
pass[Li2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000718#Files)
|FAIL|
pass[Li2008_reactions.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000718#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754133c707aa641045f15cb/download

Logs: https://api.biosimulations.org/logs/6754133c707aa641045f15cb?includeOutput=true

View: https://api.biosimulations.org/runs/6754133c707aa641045f15cb

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541339c3054f763d555f41/download

Logs: https://api.biosimulations.org/logs/67541339c3054f763d555f41?includeOutput=true

View: https://api.biosimulations.org/runs/67541339c3054f763d555f41

HTTP response: 201
| +|
[BIOMD0000000719](https://www.ebi.ac.uk/biomodels/BIOMD0000000719)
Tsai2014 - Cell cycle durationTsai2014 - Cell cycle duration control by oscillatory Dynamics in Early Xenopus laevis Embryos
|
pass[Tsai2014.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000719#Files)
|pass|
pass[tsai2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000719#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675413669fa297efdca1dbca/download

Logs: https://api.biosimulations.org/logs/675413669fa297efdca1dbca?includeOutput=true

View: https://api.biosimulations.org/runs/675413669fa297efdca1dbca

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541363707aa641045f15de/download

Logs: https://api.biosimulations.org/logs/67541363707aa641045f15de?includeOutput=true

View: https://api.biosimulations.org/runs/67541363707aa641045f15de

HTTP response: 201
| +|
[BIOMD0000000720](https://www.ebi.ac.uk/biomodels/BIOMD0000000720)
Yan2012 - Rb-E2F pathway dynamYan2012 - Rb-E2F pathway dynamics with miR449
|
pass[Yan2012.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000720#Files)
|pass|
pass[Yan2012.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000720#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675413819fa297efdca1dbf1/download

Logs: https://api.biosimulations.org/logs/675413819fa297efdca1dbf1?includeOutput=true

View: https://api.biosimulations.org/runs/675413819fa297efdca1dbf1

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754137ec3054f763d555f6e/download

Logs: https://api.biosimulations.org/logs/6754137ec3054f763d555f6e?includeOutput=true

View: https://api.biosimulations.org/runs/6754137ec3054f763d555f6e

HTTP response: 201
| +|
[BIOMD0000000721](https://www.ebi.ac.uk/biomodels/BIOMD0000000721)
Graham2013 - Role of osteocyteGraham2013 - Role of osteocytes in targeted bone remodeling
|
pass[Model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000721#Files)
|pass|
pass[V3 - ANNOTATED.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000721#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541399c3054f763d555f86/download

Logs: https://api.biosimulations.org/logs/67541399c3054f763d555f86?includeOutput=true

View: https://api.biosimulations.org/runs/67541399c3054f763d555f86

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541397707aa641045f1606/download

Logs: https://api.biosimulations.org/logs/67541397707aa641045f1606?includeOutput=true

View: https://api.biosimulations.org/runs/67541397707aa641045f1606

HTTP response: 201
| +|
[BIOMD0000000722](https://www.ebi.ac.uk/biomodels/BIOMD0000000722)
Bianchi2015 -Model for lymphanBianchi2015 -Model for lymphangiogenesis in normal and diabetic wounds
|
pass[Wound Healing with Normal health condition.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000722#Files)
|pass|
MultipleSEDMLs['Wound Healing with Diabetic health condition.sedml', 'Wound Healing with Normal health condition.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000722](https://www.ebi.ac.uk/biomodels/BIOMD0000000722)
Bianchi2015 -Model for lymphanBianchi2015 -Model for lymphangiogenesis in normal and diabetic wounds
|
pass[Wound Healing with Normal health condition.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000722#Files)
|pass|
MultipleSEDMLs['Wound Healing with Diabetic health condition.sedml', 'Wound Healing with Normal health condition.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000723](https://www.ebi.ac.uk/biomodels/BIOMD0000000723)
Weis2014 - Data driven MammaliWeis2014 - Data driven Mammalian Cell Cycle Model
|
pass[Weis2014.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000723#Files)
|pass|
pass[Weis2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000723#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675413b9707aa641045f162f/download

Logs: https://api.biosimulations.org/logs/675413b9707aa641045f162f?includeOutput=true

View: https://api.biosimulations.org/runs/675413b9707aa641045f162f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675413b4c3054f763d555f9e/download

Logs: https://api.biosimulations.org/logs/675413b4c3054f763d555f9e?includeOutput=true

View: https://api.biosimulations.org/runs/675413b4c3054f763d555f9e

HTTP response: 201
| +|
[BIOMD0000000724](https://www.ebi.ac.uk/biomodels/BIOMD0000000724)
Theinmozhi2018 - Mechanism of Theinmozhi2018 - Mechanism of PD1 inhibiting TCR signaling in Tumor immune regulation
|
pass[Theinmozhi_2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000724#Files)
|pass|
pass[Theinmozhi_2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000724#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675413d2c3054f763d555fb2/download

Logs: https://api.biosimulations.org/logs/675413d2c3054f763d555fb2?includeOutput=true

View: https://api.biosimulations.org/runs/675413d2c3054f763d555fb2

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675413d0c3054f763d555fad/download

Logs: https://api.biosimulations.org/logs/675413d0c3054f763d555fad?includeOutput=true

View: https://api.biosimulations.org/runs/675413d0c3054f763d555fad

HTTP response: 201
| +|
[BIOMD0000000725](https://www.ebi.ac.uk/biomodels/BIOMD0000000725)
Salcedo-Sora2016 - Microbial fSalcedo-Sora2016 - Microbial folate biosynthesis and utilisation
|
pass[Model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000725#Files)
|pass|
MultipleSEDMLs['MODEL1511020000_urn.sedml', 'Model.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000726](https://www.ebi.ac.uk/biomodels/BIOMD0000000726)
Ruan2017 - Transmission dynamiRuan2017 - Transmission dynamics and control of rabies in China
|
pass[Model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000726#Files)
|pass|
pass[Modelling the transmission dynamics and control of rabies in china REACTIONS.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000726#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675413eec3054f763d555fc6/download

Logs: https://api.biosimulations.org/logs/675413eec3054f763d555fc6?includeOutput=true

View: https://api.biosimulations.org/runs/675413eec3054f763d555fc6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675413ec9fa297efdca1dc45/download

Logs: https://api.biosimulations.org/logs/675413ec9fa297efdca1dc45?includeOutput=true

View: https://api.biosimulations.org/runs/675413ec9fa297efdca1dc45

HTTP response: 201
| +|
[BIOMD0000000727](https://www.ebi.ac.uk/biomodels/BIOMD0000000727)
Li2009- Assymetric CaulobacterLi2009- Assymetric Caulobacter cell cycle
|
pass[Li2009.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000727#Files)
|pass|
pass[Li2009.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000727#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541406c3054f763d555fd9/download

Logs: https://api.biosimulations.org/logs/67541406c3054f763d555fd9?includeOutput=true

View: https://api.biosimulations.org/runs/67541406c3054f763d555fd9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541403707aa641045f1668/download

Logs: https://api.biosimulations.org/logs/67541403707aa641045f1668?includeOutput=true

View: https://api.biosimulations.org/runs/67541403707aa641045f1668

HTTP response: 201
| +|
[BIOMD0000000728](https://www.ebi.ac.uk/biomodels/BIOMD0000000728)
Norel1990 - MPF and Cyclin OscNorel1990 - MPF and Cyclin Oscillations
|
pass[Norell1990.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000728#Files)
|FAIL|
pass[Norell1990.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000728#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541420c3054f763d555ff6/download

Logs: https://api.biosimulations.org/logs/67541420c3054f763d555ff6?includeOutput=true

View: https://api.biosimulations.org/runs/67541420c3054f763d555ff6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754141e9fa297efdca1dc6d/download

Logs: https://api.biosimulations.org/logs/6754141e9fa297efdca1dc6d?includeOutput=true

View: https://api.biosimulations.org/runs/6754141e9fa297efdca1dc6d

HTTP response: 201
| +|
[BIOMD0000000729](https://www.ebi.ac.uk/biomodels/BIOMD0000000729)
Goldbeter1996 - Cyclin Cdc2 kiGoldbeter1996 - Cyclin Cdc2 kinase Oscillations
|
pass[Goldbeter1996.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000729#Files)
|pass|
pass[Goldbeter1996.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000729#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541436707aa641045f168e/download

Logs: https://api.biosimulations.org/logs/67541436707aa641045f168e?includeOutput=true

View: https://api.biosimulations.org/runs/67541436707aa641045f168e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541434c3054f763d556003/download

Logs: https://api.biosimulations.org/logs/67541434c3054f763d556003?includeOutput=true

View: https://api.biosimulations.org/runs/67541434c3054f763d556003

HTTP response: 201
| +|
[BIOMD0000000730](https://www.ebi.ac.uk/biomodels/BIOMD0000000730)
Gerard2009 - An Integrated MamGerard2009 - An Integrated Mammalian Cell Cycle Model
|
pass[Gerard2009.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000730#Files)
|pass|
pass[Gerard2009.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000730#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541451c3054f763d556014/download

Logs: https://api.biosimulations.org/logs/67541451c3054f763d556014?includeOutput=true

View: https://api.biosimulations.org/runs/67541451c3054f763d556014

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754144e9fa297efdca1dca0/download

Logs: https://api.biosimulations.org/logs/6754144e9fa297efdca1dca0?includeOutput=true

View: https://api.biosimulations.org/runs/6754144e9fa297efdca1dca0

HTTP response: 201
| +|
[BIOMD0000000731](https://www.ebi.ac.uk/biomodels/BIOMD0000000731)
Robertson-Tessi M 2012 A modelRobertson-Tessi M 2012 A model of tumor Immune interaction
|
pass[22051568_Tessi.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000731#Files)
|FAIL|
pass[22051568_Tessi.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000731#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754146dc3054f763d556024/download

Logs: https://api.biosimulations.org/logs/6754146dc3054f763d556024?includeOutput=true

View: https://api.biosimulations.org/runs/6754146dc3054f763d556024

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754146a707aa641045f16ba/download

Logs: https://api.biosimulations.org/logs/6754146a707aa641045f16ba?includeOutput=true

View: https://api.biosimulations.org/runs/6754146a707aa641045f16ba

HTTP response: 201
| +|[BIOMD0000000732](https://www.ebi.ac.uk/biomodels/BIOMD0000000732)
Kirschner1998_Immunotherapy_Tumour|
pass[Kirschner_1998.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000732#Files)
|FAIL|
pass[Kirschner_1998.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000732#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541485c3054f763d556031/download

Logs: https://api.biosimulations.org/logs/67541485c3054f763d556031?includeOutput=true

View: https://api.biosimulations.org/runs/67541485c3054f763d556031

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675414839fa297efdca1dcc4/download

Logs: https://api.biosimulations.org/logs/675414839fa297efdca1dcc4?includeOutput=true

View: https://api.biosimulations.org/runs/675414839fa297efdca1dcc4

HTTP response: 201
| +|
[BIOMD0000000733](https://www.ebi.ac.uk/biomodels/BIOMD0000000733)
Moore_2004_Mathematical model Moore_2004_Mathematical model for CML and T cell interaction
|
pass[Moore_2004_fig6.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000733#Files)
|FAIL|
MultipleSEDMLs['Moore_2004_fig6.sedml', 'Moore_2004_fig7.sedml', 'Moore_2004_fig8.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000733](https://www.ebi.ac.uk/biomodels/BIOMD0000000733)
Moore_2004_Mathematical model Moore_2004_Mathematical model for CML and T cell interaction
|
pass[Moore_2004_fig6.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000733#Files)
|FAIL|
MultipleSEDMLs['Moore_2004_fig6.sedml', 'Moore_2004_fig7.sedml', 'Moore_2004_fig8.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000734](https://www.ebi.ac.uk/biomodels/BIOMD0000000734)
Mouse Iron Distribution - RichMouse Iron Distribution - Rich and Deficient iron diets (tracer)
|
pass[BIOMD0000000734.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000734#Files)
|pass|
pass[Parmar2017_Deficient_Rich_tracer.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000734#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675414a19fa297efdca1dce0/download

Logs: https://api.biosimulations.org/logs/675414a19fa297efdca1dce0?includeOutput=true

View: https://api.biosimulations.org/runs/675414a19fa297efdca1dce0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754149fc3054f763d556041/download

Logs: https://api.biosimulations.org/logs/6754149fc3054f763d556041?includeOutput=true

View: https://api.biosimulations.org/runs/6754149fc3054f763d556041

HTTP response: 201
| +|
[BIOMD0000000735](https://www.ebi.ac.uk/biomodels/BIOMD0000000735)
Mouse Iron Distribution - AdeqMouse Iron Distribution - Adequate iron diet (tracer)
|
pass[Parmar2017_Adequate_tracer.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000735#Files)
|pass|
pass[Parmar2017_Adequate_tracer.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000735#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675414b9c3054f763d556068/download

Logs: https://api.biosimulations.org/logs/675414b9c3054f763d556068?includeOutput=true

View: https://api.biosimulations.org/runs/675414b9c3054f763d556068

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675414b7c3054f763d556063/download

Logs: https://api.biosimulations.org/logs/675414b7c3054f763d556063?includeOutput=true

View: https://api.biosimulations.org/runs/675414b7c3054f763d556063

HTTP response: 201
| +|
[BIOMD0000000736](https://www.ebi.ac.uk/biomodels/BIOMD0000000736)
Mouse Iron Distribution - AdeqMouse Iron Distribution - Adequate iron diet (No Tracer)
|
pass[Parmar2017_Adequate_diet_Anemia_NoTracer.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000736#Files)
|pass|
pass[Parmar2017_Adequate_diet_Anemia_NoTracer.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000736#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675414d0707aa641045f171d/download

Logs: https://api.biosimulations.org/logs/675414d0707aa641045f171d?includeOutput=true

View: https://api.biosimulations.org/runs/675414d0707aa641045f171d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675414ce9fa297efdca1dd15/download

Logs: https://api.biosimulations.org/logs/675414ce9fa297efdca1dd15?includeOutput=true

View: https://api.biosimulations.org/runs/675414ce9fa297efdca1dd15

HTTP response: 201
| +|
[BIOMD0000000737](https://www.ebi.ac.uk/biomodels/BIOMD0000000737)
Mouse Iron Distribution - DefiMouse Iron Distribution - Deficient iron diet (No Tracer)
|
pass[Parmar2017_Deficient_NoTracer.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000737#Files)
|pass|
pass[Parmar2017_Deficient_NoTracer.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000737#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675414e5707aa641045f1732/download

Logs: https://api.biosimulations.org/logs/675414e5707aa641045f1732?includeOutput=true

View: https://api.biosimulations.org/runs/675414e5707aa641045f1732

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675414e3c3054f763d5560a7/download

Logs: https://api.biosimulations.org/logs/675414e3c3054f763d5560a7?includeOutput=true

View: https://api.biosimulations.org/runs/675414e3c3054f763d5560a7

HTTP response: 201
| +|
[BIOMD0000000738](https://www.ebi.ac.uk/biomodels/BIOMD0000000738)
Mouse Iron Distribution - RichMouse Iron Distribution - Rich iron diet (No Tracer)
|
pass[Parmar2017_Rich_NoTracer.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000738#Files)
|pass|
pass[Parmar2017_Rich_NoTracer.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000738#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675414fb707aa641045f174d/download

Logs: https://api.biosimulations.org/logs/675414fb707aa641045f174d?includeOutput=true

View: https://api.biosimulations.org/runs/675414fb707aa641045f174d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675414f9707aa641045f1749/download

Logs: https://api.biosimulations.org/logs/675414f9707aa641045f1749?includeOutput=true

View: https://api.biosimulations.org/runs/675414f9707aa641045f1749

HTTP response: 201
| +|
[BIOMD0000000739](https://www.ebi.ac.uk/biomodels/BIOMD0000000739)
Bravo2012 - Modelling blood coBravo2012 - Modelling blood coagulation factor Va inactivation by APC
|
pass[Bravo2012.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000739#Files)
|pass|
pass[Bravo2012.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000739#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541514707aa641045f175b/download

Logs: https://api.biosimulations.org/logs/67541514707aa641045f175b?includeOutput=true

View: https://api.biosimulations.org/runs/67541514707aa641045f175b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675415119fa297efdca1dd5a/download

Logs: https://api.biosimulations.org/logs/675415119fa297efdca1dd5a?includeOutput=true

View: https://api.biosimulations.org/runs/675415119fa297efdca1dd5a

HTTP response: 201
| +|
[BIOMD0000000740](https://www.ebi.ac.uk/biomodels/BIOMD0000000740)
Panteleev2010 - Blood CoagulatPanteleev2010 - Blood Coagulation: Full Model
|
pass[Panteleev2010_full_model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000740#Files)
|pass|
pass[Panteleev2010_full_model.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000740#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541529707aa641045f1772/download

Logs: https://api.biosimulations.org/logs/67541529707aa641045f1772?includeOutput=true

View: https://api.biosimulations.org/runs/67541529707aa641045f1772

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675415269fa297efdca1dd69/download

Logs: https://api.biosimulations.org/logs/675415269fa297efdca1dd69?includeOutput=true

View: https://api.biosimulations.org/runs/675415269fa297efdca1dd69

HTTP response: 201
| +|
[BIOMD0000000742](https://www.ebi.ac.uk/biomodels/BIOMD0000000742)
Garcia2018basic - cancer and iGarcia2018basic - cancer and immune cell count basic model
|
pass[Garcia2018basic.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000742#Files)
|FAIL|
pass[Garcia2018basic.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000742#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541542707aa641045f1788/download

Logs: https://api.biosimulations.org/logs/67541542707aa641045f1788?includeOutput=true

View: https://api.biosimulations.org/runs/67541542707aa641045f1788

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675415409fa297efdca1dd83/download

Logs: https://api.biosimulations.org/logs/675415409fa297efdca1dd83?includeOutput=true

View: https://api.biosimulations.org/runs/675415409fa297efdca1dd83

HTTP response: 201
| +|[BIOMD0000000744](https://www.ebi.ac.uk/biomodels/BIOMD0000000744)
Hu2019 - Pancreatic cancer dynamics|
pass[Hu2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000744#Files)
|FAIL|
pass[Hu2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000744#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541558707aa641045f1797/download

Logs: https://api.biosimulations.org/logs/67541558707aa641045f1797?includeOutput=true

View: https://api.biosimulations.org/runs/67541558707aa641045f1797

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675415569fa297efdca1dd93/download

Logs: https://api.biosimulations.org/logs/675415569fa297efdca1dd93?includeOutput=true

View: https://api.biosimulations.org/runs/675415569fa297efdca1dd93

HTTP response: 201
| +|
[BIOMD0000000745](https://www.ebi.ac.uk/biomodels/BIOMD0000000745)
Jarrett2018 - trastuzumab-induJarrett2018 - trastuzumab-induced immune response in murine HER2+ breast cancer model
|
pass[Jarrett2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000745#Files)
|FAIL|
pass[Jarrett2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000745#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675415719fa297efdca1dda3/download

Logs: https://api.biosimulations.org/logs/675415719fa297efdca1dda3?includeOutput=true

View: https://api.biosimulations.org/runs/675415719fa297efdca1dda3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754156ec3054f763d55611b/download

Logs: https://api.biosimulations.org/logs/6754156ec3054f763d55611b?includeOutput=true

View: https://api.biosimulations.org/runs/6754156ec3054f763d55611b

HTTP response: 201
| +|
[BIOMD0000000746](https://www.ebi.ac.uk/biomodels/BIOMD0000000746)
Saad2017 - immune checkpoint aSaad2017 - immune checkpoint and BCG in superficial bladder cancer
|
pass[Saad2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000746#Files)
|FAIL|
MultipleSEDMLs['Saad2017-no checkpoint.sedml', 'Saad2017-no treatment.sedml', 'Saad2017.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000747](https://www.ebi.ac.uk/biomodels/BIOMD0000000747)
Nagashima2002 - Simulating bloNagashima2002 - Simulating blood coagulation inhibitory effects
|
pass[Nagashima2002.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000747#Files)
|pass|
pass[Nagashima2002.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000747#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675415889fa297efdca1ddb9/download

Logs: https://api.biosimulations.org/logs/675415889fa297efdca1ddb9?includeOutput=true

View: https://api.biosimulations.org/runs/675415889fa297efdca1ddb9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675415859fa297efdca1ddb5/download

Logs: https://api.biosimulations.org/logs/675415859fa297efdca1ddb5?includeOutput=true

View: https://api.biosimulations.org/runs/675415859fa297efdca1ddb5

HTTP response: 201
| +|
[BIOMD0000000748](https://www.ebi.ac.uk/biomodels/BIOMD0000000748)
Phan2017 - innate immune in onPhan2017 - innate immune in oncolytic virotherapy
|
pass[Phan2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000748#Files)
|FAIL|
pass[Phan2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000748#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675415a0707aa641045f17f0/download

Logs: https://api.biosimulations.org/logs/675415a0707aa641045f17f0?includeOutput=true

View: https://api.biosimulations.org/runs/675415a0707aa641045f17f0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754159dc3054f763d556135/download

Logs: https://api.biosimulations.org/logs/6754159dc3054f763d556135?includeOutput=true

View: https://api.biosimulations.org/runs/6754159dc3054f763d556135

HTTP response: 201
| +|
[BIOMD0000000749](https://www.ebi.ac.uk/biomodels/BIOMD0000000749)
Reppas2015 - tumor control viaReppas2015 - tumor control via alternating immunostimulating and immunosuppressive phases
|
pass[Reppas2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000749#Files)
|FAIL|
pass[Reppas2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000749#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675415b7707aa641045f1808/download

Logs: https://api.biosimulations.org/logs/675415b7707aa641045f1808?includeOutput=true

View: https://api.biosimulations.org/runs/675415b7707aa641045f1808

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675415b5707aa641045f1805/download

Logs: https://api.biosimulations.org/logs/675415b5707aa641045f1805?includeOutput=true

View: https://api.biosimulations.org/runs/675415b5707aa641045f1805

HTTP response: 201
| +|
[BIOMD0000000750](https://www.ebi.ac.uk/biomodels/BIOMD0000000750)
Lolas2016 - tumour-induced neoLolas2016 - tumour-induced neoneurogenesis and perineural tumour growth
|
pass[Lolas2016.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000750#Files)
|FAIL|
pass[Lolas2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000750#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675415d19fa297efdca1ddf5/download

Logs: https://api.biosimulations.org/logs/675415d19fa297efdca1ddf5?includeOutput=true

View: https://api.biosimulations.org/runs/675415d19fa297efdca1ddf5

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675415cec3054f763d55615b/download

Logs: https://api.biosimulations.org/logs/675415cec3054f763d55615b?includeOutput=true

View: https://api.biosimulations.org/runs/675415cec3054f763d55615b

HTTP response: 201
| +|
[BIOMD0000000751](https://www.ebi.ac.uk/biomodels/BIOMD0000000751)
Wilkie2013b - immune-induced cWilkie2013b - immune-induced cancer dormancy and immune evasion-basic
|
pass[Wilkie2013b.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000751#Files)
|FAIL|
pass[Wilkie2013b.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000751#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675415e6707aa641045f1830/download

Logs: https://api.biosimulations.org/logs/675415e6707aa641045f1830?includeOutput=true

View: https://api.biosimulations.org/runs/675415e6707aa641045f1830

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675415e4c3054f763d556177/download

Logs: https://api.biosimulations.org/logs/675415e4c3054f763d556177?includeOutput=true

View: https://api.biosimulations.org/runs/675415e4c3054f763d556177

HTTP response: 201
| +|
[BIOMD0000000752](https://www.ebi.ac.uk/biomodels/BIOMD0000000752)
Wilkie2013r - immune-induced cWilkie2013r - immune-induced cancer dormancy and immune evasion-resistance
|
pass[Wilkie2013r.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000752#Files)
|FAIL|
pass[Wilkie2013r.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000752#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675415fdc3054f763d55618b/download

Logs: https://api.biosimulations.org/logs/675415fdc3054f763d55618b?includeOutput=true

View: https://api.biosimulations.org/runs/675415fdc3054f763d55618b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675415fa9fa297efdca1de1f/download

Logs: https://api.biosimulations.org/logs/675415fa9fa297efdca1de1f?includeOutput=true

View: https://api.biosimulations.org/runs/675415fa9fa297efdca1de1f

HTTP response: 201
| +|
[BIOMD0000000753](https://www.ebi.ac.uk/biomodels/BIOMD0000000753)
Figueredo2013/1 - immunointeraFigueredo2013/1 - immunointeraction base model
|
pass[Figueredo2013_1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000753#Files)
|FAIL|
pass[Figueredo2013_1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000753#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675416139fa297efdca1de35/download

Logs: https://api.biosimulations.org/logs/675416139fa297efdca1de35?includeOutput=true

View: https://api.biosimulations.org/runs/675416139fa297efdca1de35

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675416109fa297efdca1de30/download

Logs: https://api.biosimulations.org/logs/675416109fa297efdca1de30?includeOutput=true

View: https://api.biosimulations.org/runs/675416109fa297efdca1de30

HTTP response: 201
| +|
[BIOMD0000000754](https://www.ebi.ac.uk/biomodels/BIOMD0000000754)
Figueredo2013/2 - immunointeraFigueredo2013/2 - immunointeraction model with IL2
|
pass[Figueredo2013_2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000754#Files)
|FAIL|
pass[Figueredo2013_2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000754#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541628c3054f763d5561b6/download

Logs: https://api.biosimulations.org/logs/67541628c3054f763d5561b6?includeOutput=true

View: https://api.biosimulations.org/runs/67541628c3054f763d5561b6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675416269fa297efdca1de4c/download

Logs: https://api.biosimulations.org/logs/675416269fa297efdca1de4c?includeOutput=true

View: https://api.biosimulations.org/runs/675416269fa297efdca1de4c

HTTP response: 201
| +|
[BIOMD0000000755](https://www.ebi.ac.uk/biomodels/BIOMD0000000755)
Hansen2019 - Nine species reduHansen2019 - Nine species reduced model of blood coagulation
|
pass[Hansen2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000755#Files)
|pass|
pass[Hansen2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000755#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754163e707aa641045f1871/download

Logs: https://api.biosimulations.org/logs/6754163e707aa641045f1871?includeOutput=true

View: https://api.biosimulations.org/runs/6754163e707aa641045f1871

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754163bc3054f763d5561cd/download

Logs: https://api.biosimulations.org/logs/6754163bc3054f763d5561cd?includeOutput=true

View: https://api.biosimulations.org/runs/6754163bc3054f763d5561cd

HTTP response: 201
| +|
[BIOMD0000000756](https://www.ebi.ac.uk/biomodels/BIOMD0000000756)
Figueredo2013/3 - immunointeraFigueredo2013/3 - immunointeraction full model
|
pass[Figueredo2013_3.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000756#Files)
|FAIL|
pass[Figueredo2013_3.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000756#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541654c3054f763d5561e0/download

Logs: https://api.biosimulations.org/logs/67541654c3054f763d5561e0?includeOutput=true

View: https://api.biosimulations.org/runs/67541654c3054f763d5561e0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541652707aa641045f1880/download

Logs: https://api.biosimulations.org/logs/67541652707aa641045f1880?includeOutput=true

View: https://api.biosimulations.org/runs/67541652707aa641045f1880

HTTP response: 201
| +|
[BIOMD0000000757](https://www.ebi.ac.uk/biomodels/BIOMD0000000757)
Abernathy2016 - glioblastoma tAbernathy2016 - glioblastoma treatment
|
pass[Abernathy2016.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000757#Files)
|FAIL|
pass[Abernathy2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000757#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754166ac3054f763d5561f2/download

Logs: https://api.biosimulations.org/logs/6754166ac3054f763d5561f2?includeOutput=true

View: https://api.biosimulations.org/runs/6754166ac3054f763d5561f2

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541667707aa641045f1890/download

Logs: https://api.biosimulations.org/logs/67541667707aa641045f1890?includeOutput=true

View: https://api.biosimulations.org/runs/67541667707aa641045f1890

HTTP response: 201
| +|[BIOMD0000000758](https://www.ebi.ac.uk/biomodels/BIOMD0000000758)
Babbs2012 - immunotherapy|
pass[Babbs2012.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000758#Files)
|FAIL|
pass[Babbs2012.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000758#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541684c3054f763d556205/download

Logs: https://api.biosimulations.org/logs/67541684c3054f763d556205?includeOutput=true

View: https://api.biosimulations.org/runs/67541684c3054f763d556205

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675416809fa297efdca1deb0/download

Logs: https://api.biosimulations.org/logs/675416809fa297efdca1deb0?includeOutput=true

View: https://api.biosimulations.org/runs/675416809fa297efdca1deb0

HTTP response: 201
| +|
[BIOMD0000000759](https://www.ebi.ac.uk/biomodels/BIOMD0000000759)
den Breems2015 - macrophage inden Breems2015 - macrophage in cancer
|
pass[denBreems2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000759#Files)
|FAIL|
pass[denBreems2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000759#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541699707aa641045f18b9/download

Logs: https://api.biosimulations.org/logs/67541699707aa641045f18b9?includeOutput=true

View: https://api.biosimulations.org/runs/67541699707aa641045f18b9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675416969fa297efdca1dec1/download

Logs: https://api.biosimulations.org/logs/675416969fa297efdca1dec1?includeOutput=true

View: https://api.biosimulations.org/runs/675416969fa297efdca1dec1

HTTP response: 201
| +|
[BIOMD0000000760](https://www.ebi.ac.uk/biomodels/BIOMD0000000760)
Feizabadi2011/1 - immunodeficiFeizabadi2011/1 - immunodeficiency in cancer core model
|
pass[Feizabadi2011_1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000760#Files)
|FAIL|
pass[Feizabadi2011_1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000760#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675416af9fa297efdca1ded9/download

Logs: https://api.biosimulations.org/logs/675416af9fa297efdca1ded9?includeOutput=true

View: https://api.biosimulations.org/runs/675416af9fa297efdca1ded9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675416ad707aa641045f18c9/download

Logs: https://api.biosimulations.org/logs/675416ad707aa641045f18c9?includeOutput=true

View: https://api.biosimulations.org/runs/675416ad707aa641045f18c9

HTTP response: 201
| +|
[BIOMD0000000761](https://www.ebi.ac.uk/biomodels/BIOMD0000000761)
Cappuccio2006 - Cancer immunotCappuccio2006 - Cancer immunotherapy by interleukin-21
|
pass[Cappuccio2006 v2.0.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000761#Files)
|FAIL|
pass[Cappuccio2006 v9.0.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000761#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675416c49fa297efdca1deec/download

Logs: https://api.biosimulations.org/logs/675416c49fa297efdca1deec?includeOutput=true

View: https://api.biosimulations.org/runs/675416c49fa297efdca1deec

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675416c1707aa641045f18de/download

Logs: https://api.biosimulations.org/logs/675416c1707aa641045f18de?includeOutput=true

View: https://api.biosimulations.org/runs/675416c1707aa641045f18de

HTTP response: 201
| +|
[BIOMD0000000762](https://www.ebi.ac.uk/biomodels/BIOMD0000000762)
Kuznetsov1994 - Nonlinear dynaKuznetsov1994 - Nonlinear dynamics of immunogenic tumors
|
pass[Kuznetsov1994.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000762#Files)
|pass|
pass[Kuznetsov1994.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000762#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675416da9fa297efdca1df01/download

Logs: https://api.biosimulations.org/logs/675416da9fa297efdca1df01?includeOutput=true

View: https://api.biosimulations.org/runs/675416da9fa297efdca1df01

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675416d8c3054f763d556255/download

Logs: https://api.biosimulations.org/logs/675416d8c3054f763d556255?includeOutput=true

View: https://api.biosimulations.org/runs/675416d8c3054f763d556255

HTTP response: 201
| +|
[BIOMD0000000763](https://www.ebi.ac.uk/biomodels/BIOMD0000000763)
Dritschel2018 - A mathematicalDritschel2018 - A mathematical model of cytotoxic and helper T cell interactions in a tumour microenvironment
|
pass[Dritschel2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000763#Files)
|FAIL|
pass[Dritschel2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000763#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675416f09fa297efdca1df1f/download

Logs: https://api.biosimulations.org/logs/675416f09fa297efdca1df1f?includeOutput=true

View: https://api.biosimulations.org/runs/675416f09fa297efdca1df1f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675416ee707aa641045f192c/download

Logs: https://api.biosimulations.org/logs/675416ee707aa641045f192c?includeOutput=true

View: https://api.biosimulations.org/runs/675416ee707aa641045f192c

HTTP response: 201
| +|[BIOMD0000000764](https://www.ebi.ac.uk/biomodels/BIOMD0000000764)
Malinzi2019 - chemovirotherapy|
pass[Malinzi2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000764#Files)
|FAIL|
pass[Malinzi2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000764#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541708707aa641045f1940/download

Logs: https://api.biosimulations.org/logs/67541708707aa641045f1940?includeOutput=true

View: https://api.biosimulations.org/runs/67541708707aa641045f1940

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675417069fa297efdca1df35/download

Logs: https://api.biosimulations.org/logs/675417069fa297efdca1df35?includeOutput=true

View: https://api.biosimulations.org/runs/675417069fa297efdca1df35

HTTP response: 201
| +|
[BIOMD0000000765](https://www.ebi.ac.uk/biomodels/BIOMD0000000765)
Mager2005 - Quasi-equilibrium Mager2005 - Quasi-equilibrium pharmacokinetic model for drugs exhibiting target-mediated drug disposition
|
pass[Mager2005.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000765#Files)
|pass|
pass[Mager2005.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000765#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675417209fa297efdca1df4f/download

Logs: https://api.biosimulations.org/logs/675417209fa297efdca1df4f?includeOutput=true

View: https://api.biosimulations.org/runs/675417209fa297efdca1df4f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754171d707aa641045f1952/download

Logs: https://api.biosimulations.org/logs/6754171d707aa641045f1952?includeOutput=true

View: https://api.biosimulations.org/runs/6754171d707aa641045f1952

HTTP response: 201
| +|
[BIOMD0000000766](https://www.ebi.ac.uk/biomodels/BIOMD0000000766)
Macnamara2015/1 - virotherapy Macnamara2015/1 - virotherapy full model
|
pass[Macnamara2015_1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000766#Files)
|FAIL|
pass[Macnamara2015_1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000766#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541735c3054f763d5562ae/download

Logs: https://api.biosimulations.org/logs/67541735c3054f763d5562ae?includeOutput=true

View: https://api.biosimulations.org/runs/67541735c3054f763d5562ae

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541732c3054f763d5562ab/download

Logs: https://api.biosimulations.org/logs/67541732c3054f763d5562ab?includeOutput=true

View: https://api.biosimulations.org/runs/67541732c3054f763d5562ab

HTTP response: 201
| +|
[BIOMD0000000767](https://www.ebi.ac.uk/biomodels/BIOMD0000000767)
Macnamara2015/2 - virotherapy Macnamara2015/2 - virotherapy virus-free submodel
|
pass[Macnamara2015_2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000767#Files)
|FAIL|
pass[Macnamara2015_2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000767#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754174ac3054f763d5562ce/download

Logs: https://api.biosimulations.org/logs/6754174ac3054f763d5562ce?includeOutput=true

View: https://api.biosimulations.org/runs/6754174ac3054f763d5562ce

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541748707aa641045f1980/download

Logs: https://api.biosimulations.org/logs/67541748707aa641045f1980?includeOutput=true

View: https://api.biosimulations.org/runs/67541748707aa641045f1980

HTTP response: 201
| +|[BIOMD0000000768](https://www.ebi.ac.uk/biomodels/BIOMD0000000768)
Eftimie2010 - immunity to melanoma|
pass[Eftimie2010.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000768#Files)
|FAIL|
pass[Eftimie2010.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000768#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675417649fa297efdca1df82/download

Logs: https://api.biosimulations.org/logs/675417649fa297efdca1df82?includeOutput=true

View: https://api.biosimulations.org/runs/675417649fa297efdca1df82

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541761c3054f763d5562dd/download

Logs: https://api.biosimulations.org/logs/67541761c3054f763d5562dd?includeOutput=true

View: https://api.biosimulations.org/runs/67541761c3054f763d5562dd

HTTP response: 201
| +|
[BIOMD0000000769](https://www.ebi.ac.uk/biomodels/BIOMD0000000769)
Eftimie2017/2 - interaction ofEftimie2017/2 - interaction of Th and macrophage in melanoma
|
pass[Eftimie2017_2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000769#Files)
|FAIL|
pass[Eftimie2017_2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000769#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754177f707aa641045f19a9/download

Logs: https://api.biosimulations.org/logs/6754177f707aa641045f19a9?includeOutput=true

View: https://api.biosimulations.org/runs/6754177f707aa641045f19a9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754177b707aa641045f19a6/download

Logs: https://api.biosimulations.org/logs/6754177b707aa641045f19a6?includeOutput=true

View: https://api.biosimulations.org/runs/6754177b707aa641045f19a6

HTTP response: 201
| +|
[BIOMD0000000770](https://www.ebi.ac.uk/biomodels/BIOMD0000000770)
Eftimie2017/1 - interaction ofEftimie2017/1 - interaction of Th and macrophage
|
pass[Eftimie2017_1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000770#Files)
|FAIL|
pass[Eftimie2017_1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000770#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675417999fa297efdca1dfb0/download

Logs: https://api.biosimulations.org/logs/675417999fa297efdca1dfb0?includeOutput=true

View: https://api.biosimulations.org/runs/675417999fa297efdca1dfb0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541796707aa641045f19cb/download

Logs: https://api.biosimulations.org/logs/67541796707aa641045f19cb?includeOutput=true

View: https://api.biosimulations.org/runs/67541796707aa641045f19cb

HTTP response: 201
| +|
[BIOMD0000000771](https://www.ebi.ac.uk/biomodels/BIOMD0000000771)
Bajzer2008 - Modeling of canceBajzer2008 - Modeling of cancer virotherapy with recombinant measles viruses
|
pass[Bazjer2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000771#Files)
|FAIL|
pass[Bazjer2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000771#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675417b3c3054f763d556311/download

Logs: https://api.biosimulations.org/logs/675417b3c3054f763d556311?includeOutput=true

View: https://api.biosimulations.org/runs/675417b3c3054f763d556311

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675417b0707aa641045f19dd/download

Logs: https://api.biosimulations.org/logs/675417b0707aa641045f19dd?includeOutput=true

View: https://api.biosimulations.org/runs/675417b0707aa641045f19dd

HTTP response: 201
| +|
[BIOMD0000000772](https://www.ebi.ac.uk/biomodels/BIOMD0000000772)
Wang2019 - A mathematical modeWang2019 - A mathematical model of oncolytic virotherapy with time delay
|
pass[Wang2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000772#Files)
|pass|
pass[Wang2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000772#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675417ce9fa297efdca1dfda/download

Logs: https://api.biosimulations.org/logs/675417ce9fa297efdca1dfda?includeOutput=true

View: https://api.biosimulations.org/runs/675417ce9fa297efdca1dfda

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675417cbc3054f763d55632a/download

Logs: https://api.biosimulations.org/logs/675417cbc3054f763d55632a?includeOutput=true

View: https://api.biosimulations.org/runs/675417cbc3054f763d55632a

HTTP response: 201
| +|
[BIOMD0000000773](https://www.ebi.ac.uk/biomodels/BIOMD0000000773)
Wodarz2018/2 - model with tranWodarz2018/2 - model with transit amplifying cells
|
pass[Wodarz2018_2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000773#Files)
|FAIL|
pass[Wodarz2018_2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000773#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675417ebc3054f763d556341/download

Logs: https://api.biosimulations.org/logs/675417ebc3054f763d556341?includeOutput=true

View: https://api.biosimulations.org/runs/675417ebc3054f763d556341

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675417e89fa297efdca1dfe7/download

Logs: https://api.biosimulations.org/logs/675417e89fa297efdca1dfe7?includeOutput=true

View: https://api.biosimulations.org/runs/675417e89fa297efdca1dfe7

HTTP response: 201
| +|[BIOMD0000000774](https://www.ebi.ac.uk/biomodels/BIOMD0000000774)
Wodarz2018/1 - simple model|
pass[Wodarz2018_1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000774#Files)
|FAIL|
pass[Wodarz2018_1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000774#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541803707aa641045f1a22/download

Logs: https://api.biosimulations.org/logs/67541803707aa641045f1a22?includeOutput=true

View: https://api.biosimulations.org/runs/67541803707aa641045f1a22

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541800707aa641045f1a1f/download

Logs: https://api.biosimulations.org/logs/67541800707aa641045f1a1f?includeOutput=true

View: https://api.biosimulations.org/runs/67541800707aa641045f1a1f

HTTP response: 201
| +|[BIOMD0000000775](https://www.ebi.ac.uk/biomodels/BIOMD0000000775)
Iarosz2015 - brain tumor|
pass[Iarosz2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000775#Files)
|FAIL|
pass[Iarosz2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000775#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
FAILDownload: https://api.biosimulations.org/results/6754181c707aa641045f1a38/download

Logs: https://api.biosimulations.org/logs/6754181c707aa641045f1a38?includeOutput=true

View: https://api.biosimulations.org/runs/6754181c707aa641045f1a38

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: CVODE Error: CV_CONV_FAILURE: Convergence test failures occurred too many times (= MXNCF = 10) during one internal timestep or occurred with |h| = hmin.; In virtual double rr::CVODEIntegrator::integrate(double, double)

Exception type: CombineArchiveExecutionError
|
passDownload: https://api.biosimulations.org/results/67541819c3054f763d55636b/download

Logs: https://api.biosimulations.org/logs/67541819c3054f763d55636b?includeOutput=true

View: https://api.biosimulations.org/runs/67541819c3054f763d55636b

HTTP response: 201
| +|[BIOMD0000000776](https://www.ebi.ac.uk/biomodels/BIOMD0000000776)
Monro2008 - chemotherapy resistance|
pass[Monro2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000776#Files)
|FAIL|
pass[Monro2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000776#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541834c3054f763d556388/download

Logs: https://api.biosimulations.org/logs/67541834c3054f763d556388?includeOutput=true

View: https://api.biosimulations.org/runs/67541834c3054f763d556388

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541831707aa641045f1a47/download

Logs: https://api.biosimulations.org/logs/67541831707aa641045f1a47?includeOutput=true

View: https://api.biosimulations.org/runs/67541831707aa641045f1a47

HTTP response: 201
| +|
[BIOMD0000000777](https://www.ebi.ac.uk/biomodels/BIOMD0000000777)
Chakrabarty2010 - A control thChakrabarty2010 - A control theory approach to cancer remission aided by an optimal therapy
|
pass[Chakrabarty2010.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000777#Files)
|pass|
pass[Chakrabarty2010.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000777#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754184dc3054f763d55639b/download

Logs: https://api.biosimulations.org/logs/6754184dc3054f763d55639b?includeOutput=true

View: https://api.biosimulations.org/runs/6754184dc3054f763d55639b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754184ac3054f763d556398/download

Logs: https://api.biosimulations.org/logs/6754184ac3054f763d556398?includeOutput=true

View: https://api.biosimulations.org/runs/6754184ac3054f763d556398

HTTP response: 201
| +|
[BIOMD0000000778](https://www.ebi.ac.uk/biomodels/BIOMD0000000778)
Wei2017 - tumor, T cell and cyWei2017 - tumor, T cell and cytokine interaction
|
pass[Wei2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000778#Files)
|FAIL|
pass[Wei2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000778#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541864c3054f763d5563ac/download

Logs: https://api.biosimulations.org/logs/67541864c3054f763d5563ac?includeOutput=true

View: https://api.biosimulations.org/runs/67541864c3054f763d5563ac

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541862707aa641045f1a75/download

Logs: https://api.biosimulations.org/logs/67541862707aa641045f1a75?includeOutput=true

View: https://api.biosimulations.org/runs/67541862707aa641045f1a75

HTTP response: 201
| +|
[BIOMD0000000779](https://www.ebi.ac.uk/biomodels/BIOMD0000000779)
dePillis2009 - Mathematical modePillis2009 - Mathematical model creation for cancer chemo-immunotherapy
|
pass[dePillis2009.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000779#Files)
|pass|
pass[dePillis2009.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000779#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541880c3054f763d5563c0/download

Logs: https://api.biosimulations.org/logs/67541880c3054f763d5563c0?includeOutput=true

View: https://api.biosimulations.org/runs/67541880c3054f763d5563c0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754187d9fa297efdca1e05c/download

Logs: https://api.biosimulations.org/logs/6754187d9fa297efdca1e05c?includeOutput=true

View: https://api.biosimulations.org/runs/6754187d9fa297efdca1e05c

HTTP response: 201
| +|
[BIOMD0000000780](https://www.ebi.ac.uk/biomodels/BIOMD0000000780)
Wang2016/1 - oncolytic efficacWang2016/1 - oncolytic efficacy of M1 virus-SNTM model
|
pass[Wang2016_1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000780#Files)
|FAIL|
pass[Wang2016_1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000780#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754189a9fa297efdca1e074/download

Logs: https://api.biosimulations.org/logs/6754189a9fa297efdca1e074?includeOutput=true

View: https://api.biosimulations.org/runs/6754189a9fa297efdca1e074

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541897c3054f763d5563d2/download

Logs: https://api.biosimulations.org/logs/67541897c3054f763d5563d2?includeOutput=true

View: https://api.biosimulations.org/runs/67541897c3054f763d5563d2

HTTP response: 201
| +|
[BIOMD0000000781](https://www.ebi.ac.uk/biomodels/BIOMD0000000781)
Wang2016/2 - oncolytic efficacWang2016/2 - oncolytic efficacy of M1 virus-SNT model
|
pass[Wang2016_2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000781#Files)
|FAIL|
pass[Wang2016_2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000781#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675418b6c3054f763d5563eb/download

Logs: https://api.biosimulations.org/logs/675418b6c3054f763d5563eb?includeOutput=true

View: https://api.biosimulations.org/runs/675418b6c3054f763d5563eb

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675418b2707aa641045f1aac/download

Logs: https://api.biosimulations.org/logs/675418b2707aa641045f1aac?includeOutput=true

View: https://api.biosimulations.org/runs/675418b2707aa641045f1aac

HTTP response: 201
| +|
[BIOMD0000000782](https://www.ebi.ac.uk/biomodels/BIOMD0000000782)
Wang2016/3 - oncolytic efficacWang2016/3 - oncolytic efficacy of M1 virus-SN model
|
pass[Wang2016_3.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000782#Files)
|FAIL|
pass[Wang2016_3.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000782#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675418d0707aa641045f1ad9/download

Logs: https://api.biosimulations.org/logs/675418d0707aa641045f1ad9?includeOutput=true

View: https://api.biosimulations.org/runs/675418d0707aa641045f1ad9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675418cd707aa641045f1ad6/download

Logs: https://api.biosimulations.org/logs/675418cd707aa641045f1ad6?includeOutput=true

View: https://api.biosimulations.org/runs/675418cd707aa641045f1ad6

HTTP response: 201
| +|
[BIOMD0000000783](https://www.ebi.ac.uk/biomodels/BIOMD0000000783)
Dong2014 - Mathematical modeliDong2014 - Mathematical modeling on helper t cells in a tumor immune system
|
pass[Dong2014.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000783#Files)
|FAIL|
pass[Dong2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000783#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675418e8707aa641045f1afd/download

Logs: https://api.biosimulations.org/logs/675418e8707aa641045f1afd?includeOutput=true

View: https://api.biosimulations.org/runs/675418e8707aa641045f1afd

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675418e69fa297efdca1e0c6/download

Logs: https://api.biosimulations.org/logs/675418e69fa297efdca1e0c6?includeOutput=true

View: https://api.biosimulations.org/runs/675418e69fa297efdca1e0c6

HTTP response: 201
| +|
[BIOMD0000000784](https://www.ebi.ac.uk/biomodels/BIOMD0000000784)
Lopez2014 - A Validated MathemLopez2014 - A Validated Mathematical Model of Tumor Growth Including Tumor-Host Interaction and Cell-Mediated Immune Response
|
pass[Lopez2014.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000784#Files)
|FAIL|
pass[Lopez2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000784#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541902707aa641045f1b1b/download

Logs: https://api.biosimulations.org/logs/67541902707aa641045f1b1b?includeOutput=true

View: https://api.biosimulations.org/runs/67541902707aa641045f1b1b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675418ff9fa297efdca1e0d8/download

Logs: https://api.biosimulations.org/logs/675418ff9fa297efdca1e0d8?includeOutput=true

View: https://api.biosimulations.org/runs/675418ff9fa297efdca1e0d8

HTTP response: 201
| +|
[BIOMD0000000785](https://www.ebi.ac.uk/biomodels/BIOMD0000000785)
Sotolongo-Costa2003 - BehaviorSotolongo-Costa2003 - Behavior of tumors under nonstationary therapy
|
pass[Sotolongo-Costa2003.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000785#Files)
|FAIL|
pass[Sotolongo-Costa2003.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000785#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754191a9fa297efdca1e0ec/download

Logs: https://api.biosimulations.org/logs/6754191a9fa297efdca1e0ec?includeOutput=true

View: https://api.biosimulations.org/runs/6754191a9fa297efdca1e0ec

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675419179fa297efdca1e0e8/download

Logs: https://api.biosimulations.org/logs/675419179fa297efdca1e0e8?includeOutput=true

View: https://api.biosimulations.org/runs/675419179fa297efdca1e0e8

HTTP response: 201
| +|
[BIOMD0000000786](https://www.ebi.ac.uk/biomodels/BIOMD0000000786)
Lipniacki2004 - Mathematical mLipniacki2004 - Mathematical model of NFKB regulatory module
|
pass[Lipniacki2004.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000786#Files)
|pass|
pass[Lipniacki2004.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000786#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541934c3054f763d556453/download

Logs: https://api.biosimulations.org/logs/67541934c3054f763d556453?includeOutput=true

View: https://api.biosimulations.org/runs/67541934c3054f763d556453

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541930c3054f763d556450/download

Logs: https://api.biosimulations.org/logs/67541930c3054f763d556450?includeOutput=true

View: https://api.biosimulations.org/runs/67541930c3054f763d556450

HTTP response: 201
| +|
[BIOMD0000000787](https://www.ebi.ac.uk/biomodels/BIOMD0000000787)
Frascoli2014 - A dynamical modFrascoli2014 - A dynamical model of tumour immunotherapy
|
pass[Frascoli2014.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000787#Files)
|FAIL|
pass[Frascoli2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000787#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754194f707aa641045f1b55/download

Logs: https://api.biosimulations.org/logs/6754194f707aa641045f1b55?includeOutput=true

View: https://api.biosimulations.org/runs/6754194f707aa641045f1b55

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754194c707aa641045f1b52/download

Logs: https://api.biosimulations.org/logs/6754194c707aa641045f1b52?includeOutput=true

View: https://api.biosimulations.org/runs/6754194c707aa641045f1b52

HTTP response: 201
| +|
[BIOMD0000000788](https://www.ebi.ac.uk/biomodels/BIOMD0000000788)
Schropp2019 - Target-Mediated Schropp2019 - Target-Mediated Drug Disposition Model for Bispecific Antibodies
|
pass[Schropp2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000788#Files)
|FAIL|
pass[Schropp2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000788#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541968c3054f763d556471/download

Logs: https://api.biosimulations.org/logs/67541968c3054f763d556471?includeOutput=true

View: https://api.biosimulations.org/runs/67541968c3054f763d556471

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541965707aa641045f1b70/download

Logs: https://api.biosimulations.org/logs/67541965707aa641045f1b70?includeOutput=true

View: https://api.biosimulations.org/runs/67541965707aa641045f1b70

HTTP response: 201
| +|
[BIOMD0000000789](https://www.ebi.ac.uk/biomodels/BIOMD0000000789)
Jenner2018 - treatment of oncoJenner2018 - treatment of oncolytic virus
|
pass[Jenner2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000789#Files)
|FAIL|
pass[Jenner2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000789#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675419809fa297efdca1e148/download

Logs: https://api.biosimulations.org/logs/675419809fa297efdca1e148?includeOutput=true

View: https://api.biosimulations.org/runs/675419809fa297efdca1e148

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754197d707aa641045f1b7e/download

Logs: https://api.biosimulations.org/logs/6754197d707aa641045f1b7e?includeOutput=true

View: https://api.biosimulations.org/runs/6754197d707aa641045f1b7e

HTTP response: 201
| +|
[BIOMD0000000790](https://www.ebi.ac.uk/biomodels/BIOMD0000000790)
Alvarez2019 - A nonlinear mathAlvarez2019 - A nonlinear mathematical model of cell-mediated immune response for tumor phenotypic heterogeneity
|
pass[Alvarez2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000790#Files)
|pass|
pass[Alvarez2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000790#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541999c3054f763d556498/download

Logs: https://api.biosimulations.org/logs/67541999c3054f763d556498?includeOutput=true

View: https://api.biosimulations.org/runs/67541999c3054f763d556498

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675419969fa297efdca1e15e/download

Logs: https://api.biosimulations.org/logs/675419969fa297efdca1e15e?includeOutput=true

View: https://api.biosimulations.org/runs/675419969fa297efdca1e15e

HTTP response: 201
| +|[BIOMD0000000791](https://www.ebi.ac.uk/biomodels/BIOMD0000000791)
Wilson2012 - tumor vaccine efficacy|
pass[Wilson2012.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000791#Files)
|FAIL|
pass[Wilson2012.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000791#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675419b1c3054f763d5564bb/download

Logs: https://api.biosimulations.org/logs/675419b1c3054f763d5564bb?includeOutput=true

View: https://api.biosimulations.org/runs/675419b1c3054f763d5564bb

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675419ae9fa297efdca1e171/download

Logs: https://api.biosimulations.org/logs/675419ae9fa297efdca1e171?includeOutput=true

View: https://api.biosimulations.org/runs/675419ae9fa297efdca1e171

HTTP response: 201
| +|
[BIOMD0000000792](https://www.ebi.ac.uk/biomodels/BIOMD0000000792)
Hu2019 - Modeling Pancreatic CHu2019 - Modeling Pancreatic Cancer Dynamics with Immunotherapy
|
pass[Hu2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000792#Files)
|pass|
pass[Hu2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000792#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675419cb9fa297efdca1e183/download

Logs: https://api.biosimulations.org/logs/675419cb9fa297efdca1e183?includeOutput=true

View: https://api.biosimulations.org/runs/675419cb9fa297efdca1e183

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675419c8c3054f763d5564d8/download

Logs: https://api.biosimulations.org/logs/675419c8c3054f763d5564d8?includeOutput=true

View: https://api.biosimulations.org/runs/675419c8c3054f763d5564d8

HTTP response: 201
| +|
[BIOMD0000000793](https://www.ebi.ac.uk/biomodels/BIOMD0000000793)
Chen2011/1 - bone marrow invasChen2011/1 - bone marrow invasion absolute model
|
pass[Chen2011_1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000793#Files)
|FAIL|
MultipleSEDMLs['Chen2011_1.sedml', 'Chen2011_1swapped.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000794](https://www.ebi.ac.uk/biomodels/BIOMD0000000794)
Benary2019 - Controlling NFKB Benary2019 - Controlling NFKB dynamics by B-TrCP
|
pass[Benary2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000794#Files)
|pass|
pass[Benary2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000794#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675419e7c3054f763d5564e9/download

Logs: https://api.biosimulations.org/logs/675419e7c3054f763d5564e9?includeOutput=true

View: https://api.biosimulations.org/runs/675419e7c3054f763d5564e9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675419e4707aa641045f1bc8/download

Logs: https://api.biosimulations.org/logs/675419e4707aa641045f1bc8?includeOutput=true

View: https://api.biosimulations.org/runs/675419e4707aa641045f1bc8

HTTP response: 201
| +|
[BIOMD0000000795](https://www.ebi.ac.uk/biomodels/BIOMD0000000795)
Chen2011/2 - bone marrow invasChen2011/2 - bone marrow invasion relative model
|
pass[Chen2011_2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000795#Files)
|FAIL|
pass[Chen2011_2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000795#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541a019fa297efdca1e1b7/download

Logs: https://api.biosimulations.org/logs/67541a019fa297efdca1e1b7?includeOutput=true

View: https://api.biosimulations.org/runs/67541a019fa297efdca1e1b7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675419fe9fa297efdca1e1b4/download

Logs: https://api.biosimulations.org/logs/675419fe9fa297efdca1e1b4?includeOutput=true

View: https://api.biosimulations.org/runs/675419fe9fa297efdca1e1b4

HTTP response: 201
| +|
[BIOMD0000000796](https://www.ebi.ac.uk/biomodels/BIOMD0000000796)
Yang2012 - cancer growth with Yang2012 - cancer growth with angiogenesis
|
pass[Yang2012.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000796#Files)
|FAIL|
pass[Yang2012.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000796#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541a1b9fa297efdca1e1d0/download

Logs: https://api.biosimulations.org/logs/67541a1b9fa297efdca1e1d0?includeOutput=true

View: https://api.biosimulations.org/runs/67541a1b9fa297efdca1e1d0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541a179fa297efdca1e1cd/download

Logs: https://api.biosimulations.org/logs/67541a179fa297efdca1e1cd?includeOutput=true

View: https://api.biosimulations.org/runs/67541a179fa297efdca1e1cd

HTTP response: 201
| +|
[BIOMD0000000797](https://www.ebi.ac.uk/biomodels/BIOMD0000000797)
Hu2018 - Dynamics of tumor-CD4Hu2018 - Dynamics of tumor-CD4+-cytokine-host cells interactions with treatments
|
pass[Hu2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000797#Files)
|pass|
pass[Hu2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000797#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541a34707aa641045f1c0f/download

Logs: https://api.biosimulations.org/logs/67541a34707aa641045f1c0f?includeOutput=true

View: https://api.biosimulations.org/runs/67541a34707aa641045f1c0f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541a31707aa641045f1c0c/download

Logs: https://api.biosimulations.org/logs/67541a31707aa641045f1c0c?includeOutput=true

View: https://api.biosimulations.org/runs/67541a31707aa641045f1c0c

HTTP response: 201
| +|[BIOMD0000000798](https://www.ebi.ac.uk/biomodels/BIOMD0000000798)
Sharp2019 - AML|
pass[Sharp2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000798#Files)
|FAIL|
pass[Sharp2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000798#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541a4d707aa641045f1c29/download

Logs: https://api.biosimulations.org/logs/67541a4d707aa641045f1c29?includeOutput=true

View: https://api.biosimulations.org/runs/67541a4d707aa641045f1c29

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541a4a9fa297efdca1e1fc/download

Logs: https://api.biosimulations.org/logs/67541a4a9fa297efdca1e1fc?includeOutput=true

View: https://api.biosimulations.org/runs/67541a4a9fa297efdca1e1fc

HTTP response: 201
| +|
[BIOMD0000000799](https://www.ebi.ac.uk/biomodels/BIOMD0000000799)
Cucuianu2010 - A hypothetical-Cucuianu2010 - A hypothetical-mathematical model of acute myeloid leukaemia pathogenesis
|
pass[Cucuianu2010.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000799#Files)
|pass|
pass[Cucuianu2010.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000799#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541a64707aa641045f1c4f/download

Logs: https://api.biosimulations.org/logs/67541a64707aa641045f1c4f?includeOutput=true

View: https://api.biosimulations.org/runs/67541a64707aa641045f1c4f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541a619fa297efdca1e20c/download

Logs: https://api.biosimulations.org/logs/67541a619fa297efdca1e20c?includeOutput=true

View: https://api.biosimulations.org/runs/67541a619fa297efdca1e20c

HTTP response: 201
| +|
[BIOMD0000000800](https://www.ebi.ac.uk/biomodels/BIOMD0000000800)
Precup2012 - Mathematical modePrecup2012 - Mathematical modeling of cell dynamics after allogeneic bone marrow transplantation
|
pass[Precup2012.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000800#Files)
|pass|
pass[Precup2012.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000800#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541a7dc3054f763d556547/download

Logs: https://api.biosimulations.org/logs/67541a7dc3054f763d556547?includeOutput=true

View: https://api.biosimulations.org/runs/67541a7dc3054f763d556547

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541a7a707aa641045f1c61/download

Logs: https://api.biosimulations.org/logs/67541a7a707aa641045f1c61?includeOutput=true

View: https://api.biosimulations.org/runs/67541a7a707aa641045f1c61

HTTP response: 201
| +|[BIOMD0000000801](https://www.ebi.ac.uk/biomodels/BIOMD0000000801)
Sturrock2015 - glioma growth|
pass[Sturrock2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000801#Files)
|FAIL|
pass[Sturrock2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000801#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541a96c3054f763d556559/download

Logs: https://api.biosimulations.org/logs/67541a96c3054f763d556559?includeOutput=true

View: https://api.biosimulations.org/runs/67541a96c3054f763d556559

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541a939fa297efdca1e23b/download

Logs: https://api.biosimulations.org/logs/67541a939fa297efdca1e23b?includeOutput=true

View: https://api.biosimulations.org/runs/67541a939fa297efdca1e23b

HTTP response: 201
| +|[BIOMD0000000802](https://www.ebi.ac.uk/biomodels/BIOMD0000000802)
Hoffman2018- ADCC against cancer|
pass[Hoffman2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000802#Files)
|FAIL|
pass[Hoffman2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000802#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541aafc3054f763d55657e/download

Logs: https://api.biosimulations.org/logs/67541aafc3054f763d55657e?includeOutput=true

View: https://api.biosimulations.org/runs/67541aafc3054f763d55657e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541aac707aa641045f1c9d/download

Logs: https://api.biosimulations.org/logs/67541aac707aa641045f1c9d?includeOutput=true

View: https://api.biosimulations.org/runs/67541aac707aa641045f1c9d

HTTP response: 201
| +|
[BIOMD0000000803](https://www.ebi.ac.uk/biomodels/BIOMD0000000803)
Park2019 - IL7 receptor signalPark2019 - IL7 receptor signaling in T cells
|
pass[Park2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000803#Files)
|pass|
pass[Park2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000803#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67541acb707aa641045f1cb4/download

Logs: https://api.biosimulations.org/logs/67541acb707aa641045f1cb4?includeOutput=true

View: https://api.biosimulations.org/runs/67541acb707aa641045f1cb4

HTTP response: 201
|
FAILDownload: https://api.biosimulations.org/results/67541ac89fa297efdca1e27a/download

Logs: https://api.biosimulations.org/logs/67541ac89fa297efdca1e27a?includeOutput=true

View: https://api.biosimulations.org/runs/67541ac89fa297efdca1e27a

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :Simulation type `` not currently supported

Exception type: CombineArchiveExecutionError
| +|[BIOMD0000000804](https://www.ebi.ac.uk/biomodels/BIOMD0000000804)
Koenders2015 - multiple myeloma|
pass[Koenders2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000804#Files)
|FAIL|
pass[Koenders2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000804#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541ae69fa297efdca1e298/download

Logs: https://api.biosimulations.org/logs/67541ae69fa297efdca1e298?includeOutput=true

View: https://api.biosimulations.org/runs/67541ae69fa297efdca1e298

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541ae2707aa641045f1cc2/download

Logs: https://api.biosimulations.org/logs/67541ae2707aa641045f1cc2?includeOutput=true

View: https://api.biosimulations.org/runs/67541ae2707aa641045f1cc2

HTTP response: 201
| +|
[BIOMD0000000805](https://www.ebi.ac.uk/biomodels/BIOMD0000000805)
Al-Husari2013 - pH and lactateAl-Husari2013 - pH and lactate in tumor
|
pass[Al-Husari2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000805#Files)
|FAIL|
pass[Al-Husari2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000805#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541afec3054f763d5565b8/download

Logs: https://api.biosimulations.org/logs/67541afec3054f763d5565b8?includeOutput=true

View: https://api.biosimulations.org/runs/67541afec3054f763d5565b8

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541afb9fa297efdca1e2a7/download

Logs: https://api.biosimulations.org/logs/67541afb9fa297efdca1e2a7?includeOutput=true

View: https://api.biosimulations.org/runs/67541afb9fa297efdca1e2a7

HTTP response: 201
| +|[BIOMD0000000806](https://www.ebi.ac.uk/biomodels/BIOMD0000000806)
Eftimie2019-Macrophages Plasticity|
pass[model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000806#Files)
|FAIL|
MultipleSEDMLs['Macrophages Plasticity a.sedml', 'Macrophages Plasticity b.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000807](https://www.ebi.ac.uk/biomodels/BIOMD0000000807)
Fassoni2019 - Oncogenesis encoFassoni2019 - Oncogenesis encompassing mutations and genetic instability
|
pass[model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000807#Files)
|FAIL|
pass[Fassoni2019 - 5A.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000807#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541b19707aa641045f1cee/download

Logs: https://api.biosimulations.org/logs/67541b19707aa641045f1cee?includeOutput=true

View: https://api.biosimulations.org/runs/67541b19707aa641045f1cee

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541b16c3054f763d5565cd/download

Logs: https://api.biosimulations.org/logs/67541b16c3054f763d5565cd?includeOutput=true

View: https://api.biosimulations.org/runs/67541b16c3054f763d5565cd

HTTP response: 201
| +|
[BIOMD0000000808](https://www.ebi.ac.uk/biomodels/BIOMD0000000808)
Kronik2008 - Improving alloreaKronik2008 - Improving alloreactive CTL immunotherapy for malignant gliomas using a simulation model of their interactive dynamics
|
pass[Kronik2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000808#Files)
|pass|
pass[Kronik2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000808#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541b339fa297efdca1e2ce/download

Logs: https://api.biosimulations.org/logs/67541b339fa297efdca1e2ce?includeOutput=true

View: https://api.biosimulations.org/runs/67541b339fa297efdca1e2ce

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541b309fa297efdca1e2cb/download

Logs: https://api.biosimulations.org/logs/67541b309fa297efdca1e2cb?includeOutput=true

View: https://api.biosimulations.org/runs/67541b309fa297efdca1e2cb

HTTP response: 201
| +|
[BIOMD0000000809](https://www.ebi.ac.uk/biomodels/BIOMD0000000809)
Malinzi2018 - tumour-immune inMalinzi2018 - tumour-immune interaction model
|
pass[Malinzi2018 - tumour-immune interaction model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000809#Files)
|pass|
pass[Malinzi2018 - tumour-immune interaction model.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000809#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541b4ac3054f763d5565f6/download

Logs: https://api.biosimulations.org/logs/67541b4ac3054f763d5565f6?includeOutput=true

View: https://api.biosimulations.org/runs/67541b4ac3054f763d5565f6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541b47c3054f763d5565f3/download

Logs: https://api.biosimulations.org/logs/67541b47c3054f763d5565f3?includeOutput=true

View: https://api.biosimulations.org/runs/67541b47c3054f763d5565f3

HTTP response: 201
| +|
[BIOMD0000000810](https://www.ebi.ac.uk/biomodels/BIOMD0000000810)
Ganguli2018-immuno regulatory Ganguli2018-immuno regulatory mechanisms in tumor microenvironment
|
pass[Ganguli2018-immuno regulatory mechanisms in tumor microenvironment.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000810#Files)
|FAIL|
pass[Ganguli2018-immuno regulatory mechanisms in tumor microenvironment.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000810#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
FAILDownload: https://api.biosimulations.org/results/67541b61707aa641045f1d26/download

Logs: https://api.biosimulations.org/logs/67541b61707aa641045f1d26?includeOutput=true

View: https://api.biosimulations.org/runs/67541b61707aa641045f1d26

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: CVODE Error: CV_TOO_MUCH_WORK: The solver took mxstep (10000) internal steps but could not reach tout.; In virtual double rr::CVODEIntegrator::integrate(double, double)

Exception type: CombineArchiveExecutionError
|
passDownload: https://api.biosimulations.org/results/67541b5e707aa641045f1d23/download

Logs: https://api.biosimulations.org/logs/67541b5e707aa641045f1d23?includeOutput=true

View: https://api.biosimulations.org/runs/67541b5e707aa641045f1d23

HTTP response: 201
| +|
[BIOMD0000000811](https://www.ebi.ac.uk/biomodels/BIOMD0000000811)
He2017 - A mathematical model He2017 - A mathematical model of pancreatic cancer with two kinds of treatments
|
pass[He2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000811#Files)
|pass|
pass[He2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000811#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541b799fa297efdca1e30a/download

Logs: https://api.biosimulations.org/logs/67541b799fa297efdca1e30a?includeOutput=true

View: https://api.biosimulations.org/runs/67541b799fa297efdca1e30a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541b769fa297efdca1e307/download

Logs: https://api.biosimulations.org/logs/67541b769fa297efdca1e307?includeOutput=true

View: https://api.biosimulations.org/runs/67541b769fa297efdca1e307

HTTP response: 201
| +|
[BIOMD0000000812](https://www.ebi.ac.uk/biomodels/BIOMD0000000812)
Galante2012 - B7-H1 and a MathGalante2012 - B7-H1 and a Mathematical Model for Cytotoxic T Cell and Tumor Cell Interaction
|
pass[Galante2012.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000812#Files)
|pass|
pass[Galante2012.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000812#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541b92c3054f763d556643/download

Logs: https://api.biosimulations.org/logs/67541b92c3054f763d556643?includeOutput=true

View: https://api.biosimulations.org/runs/67541b92c3054f763d556643

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541b909fa297efdca1e31c/download

Logs: https://api.biosimulations.org/logs/67541b909fa297efdca1e31c?includeOutput=true

View: https://api.biosimulations.org/runs/67541b909fa297efdca1e31c

HTTP response: 201
| +|
[BIOMD0000000813](https://www.ebi.ac.uk/biomodels/BIOMD0000000813)
Anderson2015 - Qualitative behAnderson2015 - Qualitative behavior of systems of tumor-CD4+-cytokine interactions with treatments
|
pass[Anderson2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000813#Files)
|pass|
pass[Anderson2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000813#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541ba9c3054f763d556659/download

Logs: https://api.biosimulations.org/logs/67541ba9c3054f763d556659?includeOutput=true

View: https://api.biosimulations.org/runs/67541ba9c3054f763d556659

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541ba7707aa641045f1d58/download

Logs: https://api.biosimulations.org/logs/67541ba7707aa641045f1d58?includeOutput=true

View: https://api.biosimulations.org/runs/67541ba7707aa641045f1d58

HTTP response: 201
| +|
[BIOMD0000000814](https://www.ebi.ac.uk/biomodels/BIOMD0000000814)
Perez-Garcia19 - ComputationalPerez-Garcia19 - Computational design of improved standardized chemotherapy protocols for grade 2 oligodendrogliomas
|
pass[Perez-Garcia19 Computational design of improved standardized chemotherapy protocols for grade 2 oligodendrogliomas.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000814#Files)
|FAIL|
pass[Perez-Garcia19 Computational design of improved standardized chemotherapy protocols for grade 2 oligodendrogliomas.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000814#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541bc2c3054f763d556668/download

Logs: https://api.biosimulations.org/logs/67541bc2c3054f763d556668?includeOutput=true

View: https://api.biosimulations.org/runs/67541bc2c3054f763d556668

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541bbe707aa641045f1d70/download

Logs: https://api.biosimulations.org/logs/67541bbe707aa641045f1d70?includeOutput=true

View: https://api.biosimulations.org/runs/67541bbe707aa641045f1d70

HTTP response: 201
| +|
[BIOMD0000000815](https://www.ebi.ac.uk/biomodels/BIOMD0000000815)
Chrobak2011 - A mathematical mChrobak2011 - A mathematical model of induced cancer-adaptive immune system competition
|
pass[Chrobak2011.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000815#Files)
|pass|
pass[Chrobak2011.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000815#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541bda707aa641045f1d87/download

Logs: https://api.biosimulations.org/logs/67541bda707aa641045f1d87?includeOutput=true

View: https://api.biosimulations.org/runs/67541bda707aa641045f1d87

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541bd7707aa641045f1d84/download

Logs: https://api.biosimulations.org/logs/67541bd7707aa641045f1d84?includeOutput=true

View: https://api.biosimulations.org/runs/67541bd7707aa641045f1d84

HTTP response: 201
| +|
[BIOMD0000000816](https://www.ebi.ac.uk/biomodels/BIOMD0000000816)
Gevertz2018 - Cancer TreatmentGevertz2018 - Cancer Treatment with Oncolytic Viruses and Dendritic Cell injections original model
|
pass[model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000816#Files)
|pass|
FAIL[OVDC.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000816#Files)
|pass|
SEDMLfile```failed to validate SEDML file OVDC.sedml```
|
FAILDownload: https://api.biosimulations.org/results/67541bf3c3054f763d556698/download

Logs: https://api.biosimulations.org/logs/67541bf3c3054f763d556698?includeOutput=true

View: https://api.biosimulations.org/runs/67541bf3c3054f763d556698

HTTP response: 201

Error message: `/root/archive.omex` is not a valid COMBINE/OMEX archive. - The SED-ML file at location `./OVDC.sedml` is invalid. - Model `model` is invalid. - The model file `OV25.xml` is invalid. - `/tmp/tmpkcujsynv/./OV25.xml` is not a file.

Exception type: ValueError
|
FAILDownload: https://api.biosimulations.org/results/67541bf09fa297efdca1e370/download

Logs: https://api.biosimulations.org/logs/67541bf09fa297efdca1e370?includeOutput=true

View: https://api.biosimulations.org/runs/67541bf09fa297efdca1e370

HTTP response: 201

Error message: `/root/archive.omex` is not a valid COMBINE/OMEX archive. - The SED-ML file at location `./OVDC.sedml` is invalid. - Model `model` is invalid. - The model file `OV25.xml` is invalid. - `/tmp/tmp93cb9drm/./OV25.xml` is not a file.

Exception type: ValueError
| +|
[BIOMD0000000817](https://www.ebi.ac.uk/biomodels/BIOMD0000000817)
Gevertz2018 - cancer treatmentGevertz2018 - cancer treatment with oncolytic viruses and dendritic cell injections minimal model
|
pass[model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000817#Files)
|pass|
FAIL[OVDC.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000817#Files)
|pass|
SEDMLfile```failed to validate SEDML file OVDC.sedml```
|
FAILDownload: https://api.biosimulations.org/results/67541c0ac3054f763d5566aa/download

Logs: https://api.biosimulations.org/logs/67541c0ac3054f763d5566aa?includeOutput=true

View: https://api.biosimulations.org/runs/67541c0ac3054f763d5566aa

HTTP response: 201

Error message: `/root/archive.omex` is not a valid COMBINE/OMEX archive. - The SED-ML file at location `./OVDC.sedml` is invalid. - Model `model` is invalid. - The model file `OV25.xml` is invalid. - `/tmp/tmpwvrjr_jz/./OV25.xml` is not a file.

Exception type: ValueError
|
FAILDownload: https://api.biosimulations.org/results/67541c07707aa641045f1dac/download

Logs: https://api.biosimulations.org/logs/67541c07707aa641045f1dac?includeOutput=true

View: https://api.biosimulations.org/runs/67541c07707aa641045f1dac

HTTP response: 201

Error message: `/root/archive.omex` is not a valid COMBINE/OMEX archive. - The SED-ML file at location `./OVDC.sedml` is invalid. - Model `model` is invalid. - The model file `OV25.xml` is invalid. - `/tmp/tmphova3j2q/./OV25.xml` is not a file.

Exception type: ValueError
| +|
[BIOMD0000000818](https://www.ebi.ac.uk/biomodels/BIOMD0000000818)
Lee2008 - ERK and PI3K signal Lee2008 - ERK and PI3K signal integration by Myc
|
pass[Lee2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000818#Files)
|pass|
pass[Lee2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000818#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541c21707aa641045f1dc3/download

Logs: https://api.biosimulations.org/logs/67541c21707aa641045f1dc3?includeOutput=true

View: https://api.biosimulations.org/runs/67541c21707aa641045f1dc3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541c1ec3054f763d5566bc/download

Logs: https://api.biosimulations.org/logs/67541c1ec3054f763d5566bc?includeOutput=true

View: https://api.biosimulations.org/runs/67541c1ec3054f763d5566bc

HTTP response: 201
| +|
[BIOMD0000000819](https://www.ebi.ac.uk/biomodels/BIOMD0000000819)
Nazari2018 - IL6 mediated stemNazari2018 - IL6 mediated stem cell driven tumor growth and targeted treatment
|
pass[Nazari2018 - IL6 mediated stem cell driven tumor growth and targeted treatment.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000819#Files)
|FAIL|
pass[Nazari2018 - IL6 mediated stem cell driven tumor growth and targeted treatment.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000819#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541c38c3054f763d5566d6/download

Logs: https://api.biosimulations.org/logs/67541c38c3054f763d5566d6?includeOutput=true

View: https://api.biosimulations.org/runs/67541c38c3054f763d5566d6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541c359fa297efdca1e3b7/download

Logs: https://api.biosimulations.org/logs/67541c359fa297efdca1e3b7?includeOutput=true

View: https://api.biosimulations.org/runs/67541c359fa297efdca1e3b7

HTTP response: 201
| +|
[BIOMD0000000820](https://www.ebi.ac.uk/biomodels/BIOMD0000000820)
West2019 - Cellular interactioWest2019 - Cellular interactions constrain tumor growth
|
pass[West2019 - Cellular interactions constrain tumor growth.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000820#Files)
|FAIL|
pass[West2019 - Cellular interactions constrain tumor growth.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000820#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541c54c3054f763d5566f3/download

Logs: https://api.biosimulations.org/logs/67541c54c3054f763d5566f3?includeOutput=true

View: https://api.biosimulations.org/runs/67541c54c3054f763d5566f3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541c51c3054f763d5566f0/download

Logs: https://api.biosimulations.org/logs/67541c51c3054f763d5566f0?includeOutput=true

View: https://api.biosimulations.org/runs/67541c51c3054f763d5566f0

HTTP response: 201
| +|
[BIOMD0000000821](https://www.ebi.ac.uk/biomodels/BIOMD0000000821)
Yazdjer2019 - reinforcement leYazdjer2019 - reinforcement learning-based control of tumor growth under anti-angiogenic therapy
|
pass[Yazdjer2019 - reinforcement learning-based control of tumor growth under anti-angiogenic therapy.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000821#Files)
|FAIL|
pass[Yazdjer2019 - reinforcement learning-based control of tumor growth under anti-angiogenic therapy.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000821#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541c6b9fa297efdca1e3e3/download

Logs: https://api.biosimulations.org/logs/67541c6b9fa297efdca1e3e3?includeOutput=true

View: https://api.biosimulations.org/runs/67541c6b9fa297efdca1e3e3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541c699fa297efdca1e3e0/download

Logs: https://api.biosimulations.org/logs/67541c699fa297efdca1e3e0?includeOutput=true

View: https://api.biosimulations.org/runs/67541c699fa297efdca1e3e0

HTTP response: 201
| +|
[BIOMD0000000822](https://www.ebi.ac.uk/biomodels/BIOMD0000000822)
Dorvash2019 - Dynamic modelingDorvash2019 - Dynamic modeling of signal transduction by mTOR complexes in cancer
|
pass[Dorvash2019 - Dynamic modeling of signal transduction by mTOR complexes in cancer.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000822#Files)
|FAIL|
pass[Dorvash2019 - Dynamic modeling of signal transduction by mTOR complexes in cancer.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000822#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541c83c3054f763d55671e/download

Logs: https://api.biosimulations.org/logs/67541c83c3054f763d55671e?includeOutput=true

View: https://api.biosimulations.org/runs/67541c83c3054f763d55671e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541c80c3054f763d55671a/download

Logs: https://api.biosimulations.org/logs/67541c80c3054f763d55671a?includeOutput=true

View: https://api.biosimulations.org/runs/67541c80c3054f763d55671a

HTTP response: 201
| +|
[BIOMD0000000823](https://www.ebi.ac.uk/biomodels/BIOMD0000000823)
Varusai2018 - Dynamic modellinVarusai2018 - Dynamic modelling of the mTOR signalling network reveals complex emergent behaviours conferred by DEPTOR
|
pass[Varusai2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000823#Files)
|pass|
pass[Varusai2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000823#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541c9d9fa297efdca1e431/download

Logs: https://api.biosimulations.org/logs/67541c9d9fa297efdca1e431?includeOutput=true

View: https://api.biosimulations.org/runs/67541c9d9fa297efdca1e431

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541c9a9fa297efdca1e42e/download

Logs: https://api.biosimulations.org/logs/67541c9a9fa297efdca1e42e?includeOutput=true

View: https://api.biosimulations.org/runs/67541c9a9fa297efdca1e42e

HTTP response: 201
| +|
[BIOMD0000000824](https://www.ebi.ac.uk/biomodels/BIOMD0000000824)
Lewkiewics2019 - effects of agLewkiewics2019 - effects of aging on naive T cell populations and diversity
|
pass[Lewkiewics2019 - effects of aging on naive T cell populations and diversity.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000824#Files)
|FAIL|
pass[Lewkiewics2019 - effects of aging on naive T cell populations and diversity.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000824#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541cb69fa297efdca1e43f/download

Logs: https://api.biosimulations.org/logs/67541cb69fa297efdca1e43f?includeOutput=true

View: https://api.biosimulations.org/runs/67541cb69fa297efdca1e43f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541cb3707aa641045f1e43/download

Logs: https://api.biosimulations.org/logs/67541cb3707aa641045f1e43?includeOutput=true

View: https://api.biosimulations.org/runs/67541cb3707aa641045f1e43

HTTP response: 201
| +|
[BIOMD0000000825](https://www.ebi.ac.uk/biomodels/BIOMD0000000825)
Greene2019 - Differentiate SpoGreene2019 - Differentiate Spontaneous and Induced Evolution to Drug Resistance During Cancer Treatment
|
pass[Greene2019 - Differentiate Spontaneous and Induced Evolution to Drug Resistance During Cancer Treatment.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000825#Files)
|pass|
pass[Greene2019 - Differentiate Spontaneous and Induced Evolution to Drug Resistance During Cancer Treatment.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000825#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541ccdc3054f763d55675c/download

Logs: https://api.biosimulations.org/logs/67541ccdc3054f763d55675c?includeOutput=true

View: https://api.biosimulations.org/runs/67541ccdc3054f763d55675c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541cca9fa297efdca1e457/download

Logs: https://api.biosimulations.org/logs/67541cca9fa297efdca1e457?includeOutput=true

View: https://api.biosimulations.org/runs/67541cca9fa297efdca1e457

HTTP response: 201
| +|
[BIOMD0000000826](https://www.ebi.ac.uk/biomodels/BIOMD0000000826)
Shin_2018_EGFR-PYK2-c-Met inteShin_2018_EGFR-PYK2-c-Met interaction network_model
|
pass[Shin2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000826#Files)
|pass|
pass[Shin2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000826#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541ce8c3054f763d55676a/download

Logs: https://api.biosimulations.org/logs/67541ce8c3054f763d55676a?includeOutput=true

View: https://api.biosimulations.org/runs/67541ce8c3054f763d55676a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541ce49fa297efdca1e46c/download

Logs: https://api.biosimulations.org/logs/67541ce49fa297efdca1e46c?includeOutput=true

View: https://api.biosimulations.org/runs/67541ce49fa297efdca1e46c

HTTP response: 201
| +|
[BIOMD0000000827](https://www.ebi.ac.uk/biomodels/BIOMD0000000827)
Ito2019 - gefitnib resistance Ito2019 - gefitnib resistance of lung adenocarcinoma caused by MET amplification
|
pass[Ito2019 - gefitnib resistance of lung adenocarcinoma caused by MET amplification.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000827#Files)
|pass|
pass[Ito2019 - gefitnib resistance of lung adenocarcinoma caused by MET amplification.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000827#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541d02c3054f763d55677b/download

Logs: https://api.biosimulations.org/logs/67541d02c3054f763d55677b?includeOutput=true

View: https://api.biosimulations.org/runs/67541d02c3054f763d55677b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541cfe707aa641045f1e80/download

Logs: https://api.biosimulations.org/logs/67541cfe707aa641045f1e80?includeOutput=true

View: https://api.biosimulations.org/runs/67541cfe707aa641045f1e80

HTTP response: 201
| +|
[BIOMD0000000828](https://www.ebi.ac.uk/biomodels/BIOMD0000000828)
Jung2019 - Regulating glioblasJung2019 - Regulating glioblastoma signaling pathways and anti-invasion therapy - core control model
|
pass[Jung2019 model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000828#Files)
|FAIL|
pass[Jung2019 simulation.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000828#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541d199fa297efdca1e49a/download

Logs: https://api.biosimulations.org/logs/67541d199fa297efdca1e49a?includeOutput=true

View: https://api.biosimulations.org/runs/67541d199fa297efdca1e49a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541d16c3054f763d556796/download

Logs: https://api.biosimulations.org/logs/67541d16c3054f763d556796?includeOutput=true

View: https://api.biosimulations.org/runs/67541d16c3054f763d556796

HTTP response: 201
| +|
[BIOMD0000000829](https://www.ebi.ac.uk/biomodels/BIOMD0000000829)
Jung2019 - egulating glioblastJung2019 - egulating glioblastoma signaling pathways and anti-invasion therapy cell cycle dynamics model
|
pass[Jung2019 - egulating glioblastoma signaling pathways and anti-invasion therapy cell cycle dynamics model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000829#Files)
|FAIL|
pass[Jung2019 - egulating glioblastoma signaling pathways and anti-invasion therapy cell cycle dynamics model.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000829#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541d309fa297efdca1e4b3/download

Logs: https://api.biosimulations.org/logs/67541d309fa297efdca1e4b3?includeOutput=true

View: https://api.biosimulations.org/runs/67541d309fa297efdca1e4b3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541d2d707aa641045f1ea6/download

Logs: https://api.biosimulations.org/logs/67541d2d707aa641045f1ea6?includeOutput=true

View: https://api.biosimulations.org/runs/67541d2d707aa641045f1ea6

HTTP response: 201
| +|
[BIOMD0000000830](https://www.ebi.ac.uk/biomodels/BIOMD0000000830)
GiantsosAdams2013 - Growth of GiantsosAdams2013 - Growth of glycocalyx under static conditions
|
pass[Giantsos-Adams2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000830#Files)
|pass|
pass[Giantsos-Adams2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000830#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541d4a707aa641045f1eba/download

Logs: https://api.biosimulations.org/logs/67541d4a707aa641045f1eba?includeOutput=true

View: https://api.biosimulations.org/runs/67541d4a707aa641045f1eba

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541d479fa297efdca1e4c4/download

Logs: https://api.biosimulations.org/logs/67541d479fa297efdca1e4c4?includeOutput=true

View: https://api.biosimulations.org/runs/67541d479fa297efdca1e4c4

HTTP response: 201
| +|[BIOMD0000000831](https://www.ebi.ac.uk/biomodels/BIOMD0000000831)
Smith1980 - Hypothalamic Regulation|
pass[Smith1980_HypothalamicRegulation.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000831#Files)
|FAIL|
pass[Smith1980_HypothalamicRegulation.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000831#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541d629fa297efdca1e4db/download

Logs: https://api.biosimulations.org/logs/67541d629fa297efdca1e4db?includeOutput=true

View: https://api.biosimulations.org/runs/67541d629fa297efdca1e4db

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541d5f9fa297efdca1e4d7/download

Logs: https://api.biosimulations.org/logs/67541d5f9fa297efdca1e4d7?includeOutput=true

View: https://api.biosimulations.org/runs/67541d5f9fa297efdca1e4d7

HTTP response: 201
| +|
[BIOMD0000000832](https://www.ebi.ac.uk/biomodels/BIOMD0000000832)
Shin2016 - Unveiling Hidden DyShin2016 - Unveiling Hidden Dynamics of Hippo Signalling
|
pass[Shin2016.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000832#Files)
|pass|
pass[Shin2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000832#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541d7c707aa641045f1ee3/download

Logs: https://api.biosimulations.org/logs/67541d7c707aa641045f1ee3?includeOutput=true

View: https://api.biosimulations.org/runs/67541d7c707aa641045f1ee3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541d79c3054f763d5567e6/download

Logs: https://api.biosimulations.org/logs/67541d79c3054f763d5567e6?includeOutput=true

View: https://api.biosimulations.org/runs/67541d79c3054f763d5567e6

HTTP response: 201
| +|
[BIOMD0000000833](https://www.ebi.ac.uk/biomodels/BIOMD0000000833)
DiCamillo2016 - Insulin signalDiCamillo2016 - Insulin signalling pathway - Rule-based model
|
pass[DiCamillo2016.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000833#Files)
|pass|
pass[DiCamillo2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000833#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541d9ac3054f763d556802/download

Logs: https://api.biosimulations.org/logs/67541d9ac3054f763d556802?includeOutput=true

View: https://api.biosimulations.org/runs/67541d9ac3054f763d556802

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541d97c3054f763d5567fe/download

Logs: https://api.biosimulations.org/logs/67541d97c3054f763d5567fe?includeOutput=true

View: https://api.biosimulations.org/runs/67541d97c3054f763d5567fe

HTTP response: 201
| +|
[BIOMD0000000834](https://www.ebi.ac.uk/biomodels/BIOMD0000000834)
Verma2016 - Ca(2+) Signal PropVerma2016 - Ca(2+) Signal Propagation Along Hepatocyte Cords
|
pass[Verma2016.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000834#Files)
|pass|
pass[Verma2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000834#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541db8707aa641045f1f0b/download

Logs: https://api.biosimulations.org/logs/67541db8707aa641045f1f0b?includeOutput=true

View: https://api.biosimulations.org/runs/67541db8707aa641045f1f0b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541db5c3054f763d556816/download

Logs: https://api.biosimulations.org/logs/67541db5c3054f763d556816?includeOutput=true

View: https://api.biosimulations.org/runs/67541db5c3054f763d556816

HTTP response: 201
| +|
[BIOMD0000000835](https://www.ebi.ac.uk/biomodels/BIOMD0000000835)
Rao2014 - Fatty acid beta-oxidRao2014 - Fatty acid beta-oxidation (reduced model)
|
pass[Rao2014.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000835#Files)
|pass|
pass[Rao2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000835#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541dd4707aa641045f1f23/download

Logs: https://api.biosimulations.org/logs/67541dd4707aa641045f1f23?includeOutput=true

View: https://api.biosimulations.org/runs/67541dd4707aa641045f1f23

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541dd1c3054f763d556833/download

Logs: https://api.biosimulations.org/logs/67541dd1c3054f763d556833?includeOutput=true

View: https://api.biosimulations.org/runs/67541dd1c3054f763d556833

HTTP response: 201
| +|
[BIOMD0000000836](https://www.ebi.ac.uk/biomodels/BIOMD0000000836)
Radosavljevic2009_BioterroristRadosavljevic2009_BioterroristAttack_PanicProtection_1
|
pass[Radosavljevic2009.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000836#Files)
|pass|
pass[Radosavljevic2009.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000836#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541ded707aa641045f1f37/download

Logs: https://api.biosimulations.org/logs/67541ded707aa641045f1f37?includeOutput=true

View: https://api.biosimulations.org/runs/67541ded707aa641045f1f37

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541dea707aa641045f1f34/download

Logs: https://api.biosimulations.org/logs/67541dea707aa641045f1f34?includeOutput=true

View: https://api.biosimulations.org/runs/67541dea707aa641045f1f34

HTTP response: 201
| +|
[BIOMD0000000837](https://www.ebi.ac.uk/biomodels/BIOMD0000000837)
Hanson2016 - Toxicity ManagemeHanson2016 - Toxicity Management in CAR T cell therapy for B-ALL
|
pass[Hanson2016.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000837#Files)
|FAIL|
pass[Hanson2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000837#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541e05c3054f763d55685b/download

Logs: https://api.biosimulations.org/logs/67541e05c3054f763d55685b?includeOutput=true

View: https://api.biosimulations.org/runs/67541e05c3054f763d55685b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541e029fa297efdca1e549/download

Logs: https://api.biosimulations.org/logs/67541e029fa297efdca1e549?includeOutput=true

View: https://api.biosimulations.org/runs/67541e029fa297efdca1e549

HTTP response: 201
| +|
[BIOMD0000000838](https://www.ebi.ac.uk/biomodels/BIOMD0000000838)
Tsur2019 - Response of patientTsur2019 - Response of patients with melanoma to immune checkpoint blockade
|
pass[Tsur2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000838#Files)
|pass|
pass[Tsur2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000838#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541e1d707aa641045f1f70/download

Logs: https://api.biosimulations.org/logs/67541e1d707aa641045f1f70?includeOutput=true

View: https://api.biosimulations.org/runs/67541e1d707aa641045f1f70

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541e1ac3054f763d55686a/download

Logs: https://api.biosimulations.org/logs/67541e1ac3054f763d55686a?includeOutput=true

View: https://api.biosimulations.org/runs/67541e1ac3054f763d55686a

HTTP response: 201
| +|
[BIOMD0000000839](https://www.ebi.ac.uk/biomodels/BIOMD0000000839)
Almeida2019 - Transcription-baAlmeida2019 - Transcription-based circadian mechanism controls the duration of molecular clock states in response to signaling inputs
|
pass[Almeida2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000839#Files)
|pass|
pass[Almeida2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000839#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541e369fa297efdca1e57b/download

Logs: https://api.biosimulations.org/logs/67541e369fa297efdca1e57b?includeOutput=true

View: https://api.biosimulations.org/runs/67541e369fa297efdca1e57b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541e33707aa641045f1f84/download

Logs: https://api.biosimulations.org/logs/67541e33707aa641045f1f84?includeOutput=true

View: https://api.biosimulations.org/runs/67541e33707aa641045f1f84

HTTP response: 201
| +|
[BIOMD0000000840](https://www.ebi.ac.uk/biomodels/BIOMD0000000840)
Caldwell2019 - The Vicodin abuCaldwell2019 - The Vicodin abuse problem
|
pass[Caldwell2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000840#Files)
|pass|
pass[Caldwell2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000840#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541e4fc3054f763d556885/download

Logs: https://api.biosimulations.org/logs/67541e4fc3054f763d556885?includeOutput=true

View: https://api.biosimulations.org/runs/67541e4fc3054f763d556885

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541e4c707aa641045f1fa1/download

Logs: https://api.biosimulations.org/logs/67541e4c707aa641045f1fa1?includeOutput=true

View: https://api.biosimulations.org/runs/67541e4c707aa641045f1fa1

HTTP response: 201
| +|
[BIOMD0000000841](https://www.ebi.ac.uk/biomodels/BIOMD0000000841)
Dhawan2019 - Endogenous miRNA Dhawan2019 - Endogenous miRNA sponges mediate the generation of oscillatory dynamics for a non-coding RNA network
|
pass[Dhawan2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000841#Files)
|pass|
pass[Dhawan2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000841#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
FAILDownload: https://api.biosimulations.org/results/67541e69707aa641045f1fb7/download

Logs: https://api.biosimulations.org/logs/67541e69707aa641045f1fb7?includeOutput=true

View: https://api.biosimulations.org/runs/67541e69707aa641045f1fb7

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(P, tau1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)

Exception type: CombineArchiveExecutionError
|
passDownload: https://api.biosimulations.org/results/67541e66707aa641045f1fb4/download

Logs: https://api.biosimulations.org/logs/67541e66707aa641045f1fb4?includeOutput=true

View: https://api.biosimulations.org/runs/67541e66707aa641045f1fb4

HTTP response: 201
| +|[BIOMD0000000842](https://www.ebi.ac.uk/biomodels/BIOMD0000000842)
Heitzler2012 - GPCR signalling|
pass[MODEL1012080000.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000842#Files)
|pass|
pass[MODEL1012080000.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000842#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541e819fa297efdca1e5af/download

Logs: https://api.biosimulations.org/logs/67541e819fa297efdca1e5af?includeOutput=true

View: https://api.biosimulations.org/runs/67541e819fa297efdca1e5af

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541e7ec3054f763d5568b6/download

Logs: https://api.biosimulations.org/logs/67541e7ec3054f763d5568b6?includeOutput=true

View: https://api.biosimulations.org/runs/67541e7ec3054f763d5568b6

HTTP response: 201
| +|
[BIOMD0000000843](https://www.ebi.ac.uk/biomodels/BIOMD0000000843)
Dudziuk2019 - Biologically souDudziuk2019 - Biologically sound formal model of Hsp70 heat induction
|
pass[Dudziuk2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000843#Files)
|pass|
pass[Dudziuk2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000843#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541e9b9fa297efdca1e5c7/download

Logs: https://api.biosimulations.org/logs/67541e9b9fa297efdca1e5c7?includeOutput=true

View: https://api.biosimulations.org/runs/67541e9b9fa297efdca1e5c7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541e989fa297efdca1e5c3/download

Logs: https://api.biosimulations.org/logs/67541e989fa297efdca1e5c3?includeOutput=true

View: https://api.biosimulations.org/runs/67541e989fa297efdca1e5c3

HTTP response: 201
| +|
[BIOMD0000000844](https://www.ebi.ac.uk/biomodels/BIOMD0000000844)
Viertel2019 - A Computational Viertel2019 - A Computational model of the mammalian external tufted cell
|
pass[Viertel2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000844#Files)
|pass|
pass[Viertel2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000844#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541ebec3054f763d5568da/download

Logs: https://api.biosimulations.org/logs/67541ebec3054f763d5568da?includeOutput=true

View: https://api.biosimulations.org/runs/67541ebec3054f763d5568da

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541ebb9fa297efdca1e5d8/download

Logs: https://api.biosimulations.org/logs/67541ebb9fa297efdca1e5d8?includeOutput=true

View: https://api.biosimulations.org/runs/67541ebb9fa297efdca1e5d8

HTTP response: 201
| +|
[BIOMD0000000845](https://www.ebi.ac.uk/biomodels/BIOMD0000000845)
Gulbudak2019.1 - HeterogeneousGulbudak2019.1 - Heterogeneous viral strategies promote coexistence in virus-microbe systems (Lytic)
|
pass[Gulbudak2019.1.Lytic.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000845#Files)
|pass|
pass[Gulbudak2019.1.Lytic.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000845#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541ed99fa297efdca1e5ea/download

Logs: https://api.biosimulations.org/logs/67541ed99fa297efdca1e5ea?includeOutput=true

View: https://api.biosimulations.org/runs/67541ed99fa297efdca1e5ea

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541ed6707aa641045f200e/download

Logs: https://api.biosimulations.org/logs/67541ed6707aa641045f200e?includeOutput=true

View: https://api.biosimulations.org/runs/67541ed6707aa641045f200e

HTTP response: 201
| +|
[BIOMD0000000846](https://www.ebi.ac.uk/biomodels/BIOMD0000000846)
Gulbudak2019.2 - HeterogeneousGulbudak2019.2 - Heterogeneous viral strategies promote coexistence in virus-microbe systems (Chronic)
|
pass[Gulbudak2019.2.Chronic.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000846#Files)
|pass|
pass[Gulbudak2019.2.Chronic.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000846#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541ef3c3054f763d5568fe/download

Logs: https://api.biosimulations.org/logs/67541ef3c3054f763d5568fe?includeOutput=true

View: https://api.biosimulations.org/runs/67541ef3c3054f763d5568fe

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541ef09fa297efdca1e5fb/download

Logs: https://api.biosimulations.org/logs/67541ef09fa297efdca1e5fb?includeOutput=true

View: https://api.biosimulations.org/runs/67541ef09fa297efdca1e5fb

HTTP response: 201
| +|
[BIOMD0000000847](https://www.ebi.ac.uk/biomodels/BIOMD0000000847)
Adams2019 - The regulatory rolAdams2019 - The regulatory role of shikimate in plant phenylalanine metabolism
|
pass[Adams2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000847#Files)
|pass|
pass[Adams2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000847#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67541f0c707aa641045f2034/download

Logs: https://api.biosimulations.org/logs/67541f0c707aa641045f2034?includeOutput=true

View: https://api.biosimulations.org/runs/67541f0c707aa641045f2034

HTTP response: 201
|
FAILDownload: https://api.biosimulations.org/results/67541f0a9fa297efdca1e613/download

Logs: https://api.biosimulations.org/logs/67541f0a9fa297efdca1e613?includeOutput=true

View: https://api.biosimulations.org/runs/67541f0a9fa297efdca1e613

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :Simulation type `` not currently supported

Exception type: CombineArchiveExecutionError
| +|
[BIOMD0000000848](https://www.ebi.ac.uk/biomodels/BIOMD0000000848)
FatehiChenar2018 - MathematicaFatehiChenar2018 - Mathematical model of immune response to hepatitis B
|
pass[FatehiChenar2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000848#Files)
|pass|
pass[FatehiChenar2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000848#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541f29c3054f763d556937/download

Logs: https://api.biosimulations.org/logs/67541f29c3054f763d556937?includeOutput=true

View: https://api.biosimulations.org/runs/67541f29c3054f763d556937

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541f26707aa641045f204b/download

Logs: https://api.biosimulations.org/logs/67541f26707aa641045f204b?includeOutput=true

View: https://api.biosimulations.org/runs/67541f26707aa641045f204b

HTTP response: 201
| +|
[BIOMD0000000849](https://www.ebi.ac.uk/biomodels/BIOMD0000000849)
Potassium balance in lactatingPotassium balance in lactating and non-lactating dairy cows
|
pass[Berg2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000849#Files)
|FAIL|
pass[Berg2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000849#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541f43707aa641045f206b/download

Logs: https://api.biosimulations.org/logs/67541f43707aa641045f206b?includeOutput=true

View: https://api.biosimulations.org/runs/67541f43707aa641045f206b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541f40c3054f763d556946/download

Logs: https://api.biosimulations.org/logs/67541f40c3054f763d556946?includeOutput=true

View: https://api.biosimulations.org/runs/67541f40c3054f763d556946

HTTP response: 201
| +|
[BIOMD0000000850](https://www.ebi.ac.uk/biomodels/BIOMD0000000850)
Jenner2019 - Oncolytic virotheJenner2019 - Oncolytic virotherapy for tumours following a Gompertz growth law
|
pass[Jenner2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000850#Files)
|FAIL|
pass[Jenner2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000850#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541f5ec3054f763d556961/download

Logs: https://api.biosimulations.org/logs/67541f5ec3054f763d556961?includeOutput=true

View: https://api.biosimulations.org/runs/67541f5ec3054f763d556961

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541f5a707aa641045f207e/download

Logs: https://api.biosimulations.org/logs/67541f5a707aa641045f207e?includeOutput=true

View: https://api.biosimulations.org/runs/67541f5a707aa641045f207e

HTTP response: 201
| +|
[BIOMD0000000851](https://www.ebi.ac.uk/biomodels/BIOMD0000000851)
Ho2019 - Mathematical models oHo2019 - Mathematical models of transmission dynamics and vaccine strategies in Hong Kong during the 2017-2018 winter influenza season (Simple)
|
pass[Ho2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000851#Files)
|pass|
pass[Ho2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000851#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541f789fa297efdca1e69a/download

Logs: https://api.biosimulations.org/logs/67541f789fa297efdca1e69a?includeOutput=true

View: https://api.biosimulations.org/runs/67541f789fa297efdca1e69a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541f75c3054f763d556974/download

Logs: https://api.biosimulations.org/logs/67541f75c3054f763d556974?includeOutput=true

View: https://api.biosimulations.org/runs/67541f75c3054f763d556974

HTTP response: 201
| +|
[BIOMD0000000852](https://www.ebi.ac.uk/biomodels/BIOMD0000000852)
Andersen2017 - Mathematical moAndersen2017 - Mathematical modelling as a proof of concept for MPNs as a human inflammation model for cancer development
|
pass[Andersen2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000852#Files)
|pass|
pass[Andersen2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000852#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541f92707aa641045f20a0/download

Logs: https://api.biosimulations.org/logs/67541f92707aa641045f20a0?includeOutput=true

View: https://api.biosimulations.org/runs/67541f92707aa641045f20a0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541f8e707aa641045f209c/download

Logs: https://api.biosimulations.org/logs/67541f8e707aa641045f209c?includeOutput=true

View: https://api.biosimulations.org/runs/67541f8e707aa641045f209c

HTTP response: 201
| +|
[BIOMD0000000853](https://www.ebi.ac.uk/biomodels/BIOMD0000000853)
Smolen2018 - Paradoxical LTP mSmolen2018 - Paradoxical LTP maintenance with inhibition of protein synthesis and the proteasome
|
pass[Smolen2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000853#Files)
|pass|
pass[Smolen2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000853#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541fab9fa297efdca1e6c4/download

Logs: https://api.biosimulations.org/logs/67541fab9fa297efdca1e6c4?includeOutput=true

View: https://api.biosimulations.org/runs/67541fab9fa297efdca1e6c4

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541fa8707aa641045f20b5/download

Logs: https://api.biosimulations.org/logs/67541fa8707aa641045f20b5?includeOutput=true

View: https://api.biosimulations.org/runs/67541fa8707aa641045f20b5

HTTP response: 201
| +|[BIOMD0000000854](https://www.ebi.ac.uk/biomodels/BIOMD0000000854)
Gray2016 - The Akt switch model|
pass[Gray2016.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000854#Files)
|pass|
pass[Gray2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000854#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541fc69fa297efdca1e6d4/download

Logs: https://api.biosimulations.org/logs/67541fc69fa297efdca1e6d4?includeOutput=true

View: https://api.biosimulations.org/runs/67541fc69fa297efdca1e6d4

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541fc3707aa641045f20d3/download

Logs: https://api.biosimulations.org/logs/67541fc3707aa641045f20d3?includeOutput=true

View: https://api.biosimulations.org/runs/67541fc3707aa641045f20d3

HTTP response: 201
| +|
[BIOMD0000000855](https://www.ebi.ac.uk/biomodels/BIOMD0000000855)
Cooper2015 - Modeling the effeCooper2015 - Modeling the effects of systemic mediators on the inflammatory phase of wound healing
|
pass[Cooper2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000855#Files)
|pass|
pass[Cooper2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000855#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541fdf707aa641045f20e3/download

Logs: https://api.biosimulations.org/logs/67541fdf707aa641045f20e3?includeOutput=true

View: https://api.biosimulations.org/runs/67541fdf707aa641045f20e3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541fdd707aa641045f20e0/download

Logs: https://api.biosimulations.org/logs/67541fdd707aa641045f20e0?includeOutput=true

View: https://api.biosimulations.org/runs/67541fdd707aa641045f20e0

HTTP response: 201
| +|
[BIOMD0000000856](https://www.ebi.ac.uk/biomodels/BIOMD0000000856)
Budding yeast size control by Budding yeast size control by titration of nuclear sites
|
pass[Heldt2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000856#Files)
|FAIL|
pass[Heldt2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000856#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67541ffc9fa297efdca1e6fd/download

Logs: https://api.biosimulations.org/logs/67541ffc9fa297efdca1e6fd?includeOutput=true

View: https://api.biosimulations.org/runs/67541ffc9fa297efdca1e6fd

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67541ff7707aa641045f20f5/download

Logs: https://api.biosimulations.org/logs/67541ff7707aa641045f20f5?includeOutput=true

View: https://api.biosimulations.org/runs/67541ff7707aa641045f20f5

HTTP response: 201
| +|
[BIOMD0000000857](https://www.ebi.ac.uk/biomodels/BIOMD0000000857)
Larbat2016.1 - Modeling the diLarbat2016.1 - Modeling the diversion of primary carbon flux into secondary metabolism under variable nitrate and light or dark conditions (Base Model)
|
pass[Larbat2016.1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000857#Files)
|pass|
pass[Larbat2016.1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000857#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542017707aa641045f2112/download

Logs: https://api.biosimulations.org/logs/67542017707aa641045f2112?includeOutput=true

View: https://api.biosimulations.org/runs/67542017707aa641045f2112

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542014c3054f763d5569f0/download

Logs: https://api.biosimulations.org/logs/67542014c3054f763d5569f0?includeOutput=true

View: https://api.biosimulations.org/runs/67542014c3054f763d5569f0

HTTP response: 201
| +|
[BIOMD0000000858](https://www.ebi.ac.uk/biomodels/BIOMD0000000858)
Larbat2016.2 - Modeling the diLarbat2016.2 - Modeling the diversion of primary carbon flux into secondary metabolism under variable nitrate and light or dark conditions (Light Dark Cycles)
|
pass[Larbat2016.2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000858#Files)
|pass|
pass[Larbat2016.2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000858#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542033c3054f763d556a04/download

Logs: https://api.biosimulations.org/logs/67542033c3054f763d556a04?includeOutput=true

View: https://api.biosimulations.org/runs/67542033c3054f763d556a04

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754202fc3054f763d556a01/download

Logs: https://api.biosimulations.org/logs/6754202fc3054f763d556a01?includeOutput=true

View: https://api.biosimulations.org/runs/6754202fc3054f763d556a01

HTTP response: 201
| +|
[BIOMD0000000859](https://www.ebi.ac.uk/biomodels/BIOMD0000000859)
Larbat2016.3 - Modeling the diLarbat2016.3 - Modeling the diversion of primary carbon flux into secondary metabolism under variable nitrate and light or dark conditions (Light Dark Cycles with Minimum Starch Adaption)
|
pass[Larbat2016.3.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000859#Files)
|pass|
pass[Larbat2016.3.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000859#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754204d707aa641045f214f/download

Logs: https://api.biosimulations.org/logs/6754204d707aa641045f214f?includeOutput=true

View: https://api.biosimulations.org/runs/6754204d707aa641045f214f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542049707aa641045f214b/download

Logs: https://api.biosimulations.org/logs/67542049707aa641045f214b?includeOutput=true

View: https://api.biosimulations.org/runs/67542049707aa641045f214b

HTTP response: 201
| +|
[BIOMD0000000860](https://www.ebi.ac.uk/biomodels/BIOMD0000000860)
Proctor2017- Role of microRNAsProctor2017- Role of microRNAs in osteoarthritis (Positive Feedforward Incoherent By MicroRNA)_1
|
pass[proctor2017_model4.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000860#Files)
|FAIL|
FAIL[proctor2017_model4.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000860#Files)
|pass|
SEDMLfile```failed to validate SEDML file proctor2017_model4.sedml```
|
FAILDownload: https://api.biosimulations.org/results/67542075c3054f763d556a2d/download

Logs: https://api.biosimulations.org/logs/67542075c3054f763d556a2d?includeOutput=true

View: https://api.biosimulations.org/runs/67542075c3054f763d556a2d

HTTP response: 201

Error message: `/root/archive.omex` is not a valid COMBINE/OMEX archive. - The SED-ML file at location `./proctor2017_model4.sedml` is invalid. - Model `model` is invalid. - The model file `MODEL1610100004_url.xml` is invalid. - `/tmp/tmpv_wevjgr/./MODEL1610100004_url.xml` is not a file.

Exception type: ValueError
|
FAILDownload: https://api.biosimulations.org/results/67542072707aa641045f2164/download

Logs: https://api.biosimulations.org/logs/67542072707aa641045f2164?includeOutput=true

View: https://api.biosimulations.org/runs/67542072707aa641045f2164

HTTP response: 201

Error message: `/root/archive.omex` is not a valid COMBINE/OMEX archive. - The SED-ML file at location `./proctor2017_model4.sedml` is invalid. - Model `model` is invalid. - The model file `MODEL1610100004_url.xml` is invalid. - `/tmp/tmp0u3seomp/./MODEL1610100004_url.xml` is not a file.

Exception type: ValueError
| +|
[BIOMD0000000861](https://www.ebi.ac.uk/biomodels/BIOMD0000000861)
Bachmann2011 - Division of labBachmann2011 - Division of labor by dual feedback regulators controls JAK2/STAT5 signaling over broad ligand range
|
pass[Bachmann2011.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000861#Files)
|pass|
pass[Bachmann2011.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000861#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754208ec3054f763d556a45/download

Logs: https://api.biosimulations.org/logs/6754208ec3054f763d556a45?includeOutput=true

View: https://api.biosimulations.org/runs/6754208ec3054f763d556a45

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754208b707aa641045f2171/download

Logs: https://api.biosimulations.org/logs/6754208b707aa641045f2171?includeOutput=true

View: https://api.biosimulations.org/runs/6754208b707aa641045f2171

HTTP response: 201
| +|
[BIOMD0000000862](https://www.ebi.ac.uk/biomodels/BIOMD0000000862)
Proctor2017- Role of microRNAsProctor2017- Role of microRNAs in osteoarthritis (Positive Feedback By Micro RNA)
|
pass[Proctor2017_model0.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000862#Files)
|pass|
pass[Proctor2017_model0.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000862#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675420a6707aa641045f2187/download

Logs: https://api.biosimulations.org/logs/675420a6707aa641045f2187?includeOutput=true

View: https://api.biosimulations.org/runs/675420a6707aa641045f2187

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675420a3c3054f763d556a58/download

Logs: https://api.biosimulations.org/logs/675420a3c3054f763d556a58?includeOutput=true

View: https://api.biosimulations.org/runs/675420a3c3054f763d556a58

HTTP response: 201
| +|
[BIOMD0000000863](https://www.ebi.ac.uk/biomodels/BIOMD0000000863)
Kosinsky2018 - Radiation and PKosinsky2018 - Radiation and PD-(L)1 treatment combinations
|
pass[Kosinsky2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000863#Files)
|FAIL|
pass[Kosinsky2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000863#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675420bf707aa641045f2197/download

Logs: https://api.biosimulations.org/logs/675420bf707aa641045f2197?includeOutput=true

View: https://api.biosimulations.org/runs/675420bf707aa641045f2197

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675420bc707aa641045f2194/download

Logs: https://api.biosimulations.org/logs/675420bc707aa641045f2194?includeOutput=true

View: https://api.biosimulations.org/runs/675420bc707aa641045f2194

HTTP response: 201
| +|
[BIOMD0000000864](https://www.ebi.ac.uk/biomodels/BIOMD0000000864)
Proctor2017- Role of microRNAsProctor2017- Role of microRNAs in osteoarthritis (Negative Feedback By MicroRNA)
|
pass[Proctor2017_model1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000864#Files)
|pass|
pass[Proctor2017_model1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000864#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675420d7707aa641045f21b1/download

Logs: https://api.biosimulations.org/logs/675420d7707aa641045f21b1?includeOutput=true

View: https://api.biosimulations.org/runs/675420d7707aa641045f21b1

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675420d4707aa641045f21ad/download

Logs: https://api.biosimulations.org/logs/675420d4707aa641045f21ad?includeOutput=true

View: https://api.biosimulations.org/runs/675420d4707aa641045f21ad

HTTP response: 201
| +|
[BIOMD0000000865](https://www.ebi.ac.uk/biomodels/BIOMD0000000865)
Nikolaev2019 - ImmunobiochemicNikolaev2019 - Immunobiochemical reconstruction of influenza lung infection-melanoma skin cancer interactions
|
pass[Nikolaev2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000865#Files)
|pass|
pass[Nikolaev2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000865#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675420f5707aa641045f21c1/download

Logs: https://api.biosimulations.org/logs/675420f5707aa641045f21c1?includeOutput=true

View: https://api.biosimulations.org/runs/675420f5707aa641045f21c1

HTTP response: 201
|
FAILDownload: https://api.biosimulations.org/results/675420f29fa297efdca1e7c5/download

Logs: https://api.biosimulations.org/logs/675420f29fa297efdca1e7c5?includeOutput=true

View: https://api.biosimulations.org/runs/675420f29fa297efdca1e7c5

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :Simulation type `` not currently supported

Exception type: CombineArchiveExecutionError
| +|
[BIOMD0000000866](https://www.ebi.ac.uk/biomodels/BIOMD0000000866)
Simon2019 - NIK-dependent p100Simon2019 - NIK-dependent p100 processing into p52, Michaelis-Menten, SBML 2v4
|
pass[Simon2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000866#Files)
|pass|
pass[Simon2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000866#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67542175c3054f763d556ab9/download

Logs: https://api.biosimulations.org/logs/67542175c3054f763d556ab9?includeOutput=true

View: https://api.biosimulations.org/runs/67542175c3054f763d556ab9

HTTP response: 201
|
FAILDownload: https://api.biosimulations.org/results/675421719fa297efdca1e7e4/download

Logs: https://api.biosimulations.org/logs/675421719fa297efdca1e7e4?includeOutput=true

View: https://api.biosimulations.org/runs/675421719fa297efdca1e7e4

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :Simulation type `` not currently supported

Exception type: CombineArchiveExecutionError
| +|
[BIOMD0000000867](https://www.ebi.ac.uk/biomodels/BIOMD0000000867)
Coulibaly2019 - Interleukin-15Coulibaly2019 - Interleukin-15 Signaling in HIF-1a Regulation in Natural Killer Cells
|
pass[Coulibaly2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000867#Files)
|pass|
pass[Coulibaly2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000867#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754218dc3054f763d556ac9/download

Logs: https://api.biosimulations.org/logs/6754218dc3054f763d556ac9?includeOutput=true

View: https://api.biosimulations.org/runs/6754218dc3054f763d556ac9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754218a9fa297efdca1e7f9/download

Logs: https://api.biosimulations.org/logs/6754218a9fa297efdca1e7f9?includeOutput=true

View: https://api.biosimulations.org/runs/6754218a9fa297efdca1e7f9

HTTP response: 201
| +|
[BIOMD0000000868](https://www.ebi.ac.uk/biomodels/BIOMD0000000868)
Simon2019 - NIK-dependent p100Simon2019 - NIK-dependent p100 processing into p52, Mass Action, SBML 2v4
|
pass[simon2019_model2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000868#Files)
|pass|
pass[simon2019_model2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000868#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675421b69fa297efdca1e810/download

Logs: https://api.biosimulations.org/logs/675421b69fa297efdca1e810?includeOutput=true

View: https://api.biosimulations.org/runs/675421b69fa297efdca1e810

HTTP response: 201
|
FAILDownload: https://api.biosimulations.org/results/675421b3c3054f763d556ae6/download

Logs: https://api.biosimulations.org/logs/675421b3c3054f763d556ae6?includeOutput=true

View: https://api.biosimulations.org/runs/675421b3c3054f763d556ae6

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :Simulation type `` not currently supported

Exception type: CombineArchiveExecutionError
| +|
[BIOMD0000000869](https://www.ebi.ac.uk/biomodels/BIOMD0000000869)
Simon2019 - NIK-dependent p100Simon2019 - NIK-dependent p100 processing into p52 and IkBd degradation, Michaelis-Menten, SBML 2v4
|
pass[Simon2019_model3.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000869#Files)
|pass|
pass[Simon2019_model3.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000869#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675421d1707aa641045f2216/download

Logs: https://api.biosimulations.org/logs/675421d1707aa641045f2216?includeOutput=true

View: https://api.biosimulations.org/runs/675421d1707aa641045f2216

HTTP response: 201
|
FAILDownload: https://api.biosimulations.org/results/675421cec3054f763d556afd/download

Logs: https://api.biosimulations.org/logs/675421cec3054f763d556afd?includeOutput=true

View: https://api.biosimulations.org/runs/675421cec3054f763d556afd

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :Simulation type `` not currently supported

Exception type: CombineArchiveExecutionError
| +|
[BIOMD0000000870](https://www.ebi.ac.uk/biomodels/BIOMD0000000870)
Simon2019 - NIK-dependent p100Simon2019 - NIK-dependent p100 processing into p52 and IkBd degradation, mass action, SBML 2v4
|
pass[Simon2019_model4.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000870#Files)
|pass|
pass[Simon2019_model4.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000870#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/675421e9c3054f763d556b18/download

Logs: https://api.biosimulations.org/logs/675421e9c3054f763d556b18?includeOutput=true

View: https://api.biosimulations.org/runs/675421e9c3054f763d556b18

HTTP response: 201
|
FAILDownload: https://api.biosimulations.org/results/675421e6c3054f763d556b15/download

Logs: https://api.biosimulations.org/logs/675421e6c3054f763d556b15?includeOutput=true

View: https://api.biosimulations.org/runs/675421e6c3054f763d556b15

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :Simulation type `` not currently supported

Exception type: CombineArchiveExecutionError
| +|
[BIOMD0000000871](https://www.ebi.ac.uk/biomodels/BIOMD0000000871)
NIK-dependent p100 processing NIK-dependent p100 processing into p52 with RelB binding and IkBd degradation, mass action, SBML 2v4
|
pass[Simon2019_Figure3b.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000871#Files)
|pass|
pass[Simon2019_Figure3b.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000871#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67542203707aa641045f223a/download

Logs: https://api.biosimulations.org/logs/67542203707aa641045f223a?includeOutput=true

View: https://api.biosimulations.org/runs/67542203707aa641045f223a

HTTP response: 201
|
FAILDownload: https://api.biosimulations.org/results/675421ffc3054f763d556b32/download

Logs: https://api.biosimulations.org/logs/675421ffc3054f763d556b32?includeOutput=true

View: https://api.biosimulations.org/runs/675421ffc3054f763d556b32

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :Simulation type `` not currently supported

Exception type: CombineArchiveExecutionError
| +|
[BIOMD0000000872](https://www.ebi.ac.uk/biomodels/BIOMD0000000872)
Verma2016 - HIV and HPV co-infVerma2016 - HIV and HPV co-infection, T-cell response
|
pass[verma2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000872#Files)
|pass|
pass[verma2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000872#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754221dc3054f763d556b49/download

Logs: https://api.biosimulations.org/logs/6754221dc3054f763d556b49?includeOutput=true

View: https://api.biosimulations.org/runs/6754221dc3054f763d556b49

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754221a9fa297efdca1e862/download

Logs: https://api.biosimulations.org/logs/6754221a9fa297efdca1e862?includeOutput=true

View: https://api.biosimulations.org/runs/6754221a9fa297efdca1e862

HTTP response: 201
| +|
[BIOMD0000000873](https://www.ebi.ac.uk/biomodels/BIOMD0000000873)
Soni2018 - IL6 induced M2 PhenSoni2018 - IL6 induced M2 Phenotype in Leishmania major infected macrophage
|
pass[Soni2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000873#Files)
|FAIL|
pass[Soni2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000873#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542237707aa641045f2260/download

Logs: https://api.biosimulations.org/logs/67542237707aa641045f2260?includeOutput=true

View: https://api.biosimulations.org/runs/67542237707aa641045f2260

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542234c3054f763d556b5f/download

Logs: https://api.biosimulations.org/logs/67542234c3054f763d556b5f?includeOutput=true

View: https://api.biosimulations.org/runs/67542234c3054f763d556b5f

HTTP response: 201
| +|
[BIOMD0000000874](https://www.ebi.ac.uk/biomodels/BIOMD0000000874)
Perelson1993 - HIVinfection_CDPerelson1993 - HIVinfection_CD4Tcells_ModelA
|
pass[Perelson1993.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000874#Files)
|pass|
pass[Perelson1993.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000874#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542252c3054f763d556b87/download

Logs: https://api.biosimulations.org/logs/67542252c3054f763d556b87?includeOutput=true

View: https://api.biosimulations.org/runs/67542252c3054f763d556b87

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754224e707aa641045f2284/download

Logs: https://api.biosimulations.org/logs/6754224e707aa641045f2284?includeOutput=true

View: https://api.biosimulations.org/runs/6754224e707aa641045f2284

HTTP response: 201
| +|[BIOMD0000000875](https://www.ebi.ac.uk/biomodels/BIOMD0000000875)
Nelson2000- HIV-1 general model 1|
pass[Nelson2000.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000875#Files)
|FAIL|
pass[Nelson2000.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000875#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754226d707aa641045f2295/download

Logs: https://api.biosimulations.org/logs/6754226d707aa641045f2295?includeOutput=true

View: https://api.biosimulations.org/runs/6754226d707aa641045f2295

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754226a9fa297efdca1e8c1/download

Logs: https://api.biosimulations.org/logs/6754226a9fa297efdca1e8c1?includeOutput=true

View: https://api.biosimulations.org/runs/6754226a9fa297efdca1e8c1

HTTP response: 201
| +|
[BIOMD0000000876](https://www.ebi.ac.uk/biomodels/BIOMD0000000876)
Aavani2019 - The role of CD4 TAavani2019 - The role of CD4 T cells in immune system activation and viral reproduction in a simple model for HIV infection
|
pass[Aavani2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000876#Files)
|pass|
pass[Aavani2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000876#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542287707aa641045f22b6/download

Logs: https://api.biosimulations.org/logs/67542287707aa641045f22b6?includeOutput=true

View: https://api.biosimulations.org/runs/67542287707aa641045f22b6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542284c3054f763d556bb1/download

Logs: https://api.biosimulations.org/logs/67542284c3054f763d556bb1?includeOutput=true

View: https://api.biosimulations.org/runs/67542284c3054f763d556bb1

HTTP response: 201
| +|
[BIOMD0000000877](https://www.ebi.ac.uk/biomodels/BIOMD0000000877)
Ontah2019 - Dynamic analysis oOntah2019 - Dynamic analysis of a tumor treatment model using oncolytic virus and chemotherapy with saturated infection rate
|
pass[Ontah2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000877#Files)
|pass|
pass[Ontah2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000877#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675422a19fa297efdca1e8df/download

Logs: https://api.biosimulations.org/logs/675422a19fa297efdca1e8df?includeOutput=true

View: https://api.biosimulations.org/runs/675422a19fa297efdca1e8df

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754229ec3054f763d556bbe/download

Logs: https://api.biosimulations.org/logs/6754229ec3054f763d556bbe?includeOutput=true

View: https://api.biosimulations.org/runs/6754229ec3054f763d556bbe

HTTP response: 201
| +|[BIOMD0000000878](https://www.ebi.ac.uk/biomodels/BIOMD0000000878)
Lenbury2001_InsulinKineticsModel_A|
pass[Lenbury2001.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000878#Files)
|pass|
pass[Lenbury2001.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000878#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675422bac3054f763d556bdf/download

Logs: https://api.biosimulations.org/logs/675422bac3054f763d556bdf?includeOutput=true

View: https://api.biosimulations.org/runs/675422bac3054f763d556bdf

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675422b79fa297efdca1e8f1/download

Logs: https://api.biosimulations.org/logs/675422b79fa297efdca1e8f1?includeOutput=true

View: https://api.biosimulations.org/runs/675422b79fa297efdca1e8f1

HTTP response: 201
| +|
[BIOMD0000000879](https://www.ebi.ac.uk/biomodels/BIOMD0000000879)
Rodrigues2019 - A mathematicalRodrigues2019 - A mathematical model for chemoimmunotherapy of chronic lymphocytic leukemia
|
pass[Rodrigues2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000879#Files)
|pass|
pass[Rodrigues2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000879#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675422d4707aa641045f22ef/download

Logs: https://api.biosimulations.org/logs/675422d4707aa641045f22ef?includeOutput=true

View: https://api.biosimulations.org/runs/675422d4707aa641045f22ef

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675422d1707aa641045f22ec/download

Logs: https://api.biosimulations.org/logs/675422d1707aa641045f22ec?includeOutput=true

View: https://api.biosimulations.org/runs/675422d1707aa641045f22ec

HTTP response: 201
| +|
[BIOMD0000000880](https://www.ebi.ac.uk/biomodels/BIOMD0000000880)
Trisilowati2018 - Optimal contTrisilowati2018 - Optimal control of tumor-immune system interaction with treatment
|
pass[Trisilowati2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000880#Files)
|pass|
pass[Trisilowati2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000880#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675422ef707aa641045f2300/download

Logs: https://api.biosimulations.org/logs/675422ef707aa641045f2300?includeOutput=true

View: https://api.biosimulations.org/runs/675422ef707aa641045f2300

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675422ec707aa641045f22fd/download

Logs: https://api.biosimulations.org/logs/675422ec707aa641045f22fd?includeOutput=true

View: https://api.biosimulations.org/runs/675422ec707aa641045f22fd

HTTP response: 201
| +|
[BIOMD0000000881](https://www.ebi.ac.uk/biomodels/BIOMD0000000881)
Kogan2013 - A mathematical modKogan2013 - A mathematical model for the immunotherapeutic control of the TH1 TH2 imbalance in melanoma
|
pass[Kogan2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000881#Files)
|pass|
pass[Kogan2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000881#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/67542306707aa641045f2312/download

Logs: https://api.biosimulations.org/logs/67542306707aa641045f2312?includeOutput=true

View: https://api.biosimulations.org/runs/67542306707aa641045f2312

HTTP response: 201
|
FAILDownload: https://api.biosimulations.org/results/67542304c3054f763d556c21/download

Logs: https://api.biosimulations.org/logs/67542304c3054f763d556c21?includeOutput=true

View: https://api.biosimulations.org/runs/67542304c3054f763d556c21

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :Simulation type `` not currently supported

Exception type: CombineArchiveExecutionError
| +|
[BIOMD0000000883](https://www.ebi.ac.uk/biomodels/BIOMD0000000883)
Giani2019 - Computational modeGiani2019 - Computational modeling to predict MAP3K8 effects as mediator of resistance to vemurafenib in thyroid cancer stem cells
|
pass[Giani2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000883#Files)
|pass|
MultipleSEDMLs['Giani2019.sedml', 'MAP3K8_Thyroid_Spheres_V3.4.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000884](https://www.ebi.ac.uk/biomodels/BIOMD0000000884)
Cortes2019 - Optimality of theCortes2019 - Optimality of the spontaneous prophage induction rate.
|
pass[Cortes2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000884#Files)
|pass|
pass[Cortes2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000884#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542326c3054f763d556c38/download

Logs: https://api.biosimulations.org/logs/67542326c3054f763d556c38?includeOutput=true

View: https://api.biosimulations.org/runs/67542326c3054f763d556c38

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675423239fa297efdca1e947/download

Logs: https://api.biosimulations.org/logs/675423239fa297efdca1e947?includeOutput=true

View: https://api.biosimulations.org/runs/675423239fa297efdca1e947

HTTP response: 201
| +|
[BIOMD0000000885](https://www.ebi.ac.uk/biomodels/BIOMD0000000885)
Sumana2018 - Mathematical modeSumana2018 - Mathematical modeling of cancer-immune system, considering the role of antibodies.
|
pass[Sumana2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000885#Files)
|pass|
pass[Sumana2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000885#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754233f9fa297efdca1e96c/download

Logs: https://api.biosimulations.org/logs/6754233f9fa297efdca1e96c?includeOutput=true

View: https://api.biosimulations.org/runs/6754233f9fa297efdca1e96c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754233cc3054f763d556c47/download

Logs: https://api.biosimulations.org/logs/6754233cc3054f763d556c47?includeOutput=true

View: https://api.biosimulations.org/runs/6754233cc3054f763d556c47

HTTP response: 201
| +|
[BIOMD0000000891](https://www.ebi.ac.uk/biomodels/BIOMD0000000891)
Khajanchi2019 - Stability AnalKhajanchi2019 - Stability Analysis of a Mathematical Model forGlioma-Immune Interaction under OptimalTherapy
|
pass[Khajanchi2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000891#Files)
|pass|
pass[Khajanchi2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000891#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754235c9fa297efdca1e984/download

Logs: https://api.biosimulations.org/logs/6754235c9fa297efdca1e984?includeOutput=true

View: https://api.biosimulations.org/runs/6754235c9fa297efdca1e984

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542358707aa641045f2350/download

Logs: https://api.biosimulations.org/logs/67542358707aa641045f2350?includeOutput=true

View: https://api.biosimulations.org/runs/67542358707aa641045f2350

HTTP response: 201
| +|
[BIOMD0000000892](https://www.ebi.ac.uk/biomodels/BIOMD0000000892)
Sandip2013 - Modeling the dynaSandip2013 - Modeling the dynamics of hepatitis C virus with combined antiviral drug therapy: interferon and ribavirin.
|
pass[Sandip2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000892#Files)
|pass|
pass[Sandip2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000892#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542372707aa641045f236e/download

Logs: https://api.biosimulations.org/logs/67542372707aa641045f236e?includeOutput=true

View: https://api.biosimulations.org/runs/67542372707aa641045f236e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754236fc3054f763d556c67/download

Logs: https://api.biosimulations.org/logs/6754236fc3054f763d556c67?includeOutput=true

View: https://api.biosimulations.org/runs/6754236fc3054f763d556c67

HTTP response: 201
| +|
[BIOMD0000000893](https://www.ebi.ac.uk/biomodels/BIOMD0000000893)
GonzalezMiranda2013 - The effeGonzalezMiranda2013 - The effect of circadian oscillations on biochemical cell signaling by NF-κB
|
pass[GonzalezMiranda2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000893#Files)
|FAIL|
pass[GonzalezMiranda2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000893#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754238b707aa641045f2383/download

Logs: https://api.biosimulations.org/logs/6754238b707aa641045f2383?includeOutput=true

View: https://api.biosimulations.org/runs/6754238b707aa641045f2383

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675423889fa297efdca1e9a4/download

Logs: https://api.biosimulations.org/logs/675423889fa297efdca1e9a4?includeOutput=true

View: https://api.biosimulations.org/runs/675423889fa297efdca1e9a4

HTTP response: 201
| +|
[BIOMD0000000894](https://www.ebi.ac.uk/biomodels/BIOMD0000000894)
Bose2011 - Noise-assisted inteBose2011 - Noise-assisted interactions of tumor and immune cells
|
pass[Bose2011.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000894#Files)
|FAIL|
pass[Bose2011.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000894#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675423a3c3054f763d556c92/download

Logs: https://api.biosimulations.org/logs/675423a3c3054f763d556c92?includeOutput=true

View: https://api.biosimulations.org/runs/675423a3c3054f763d556c92

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675423a0707aa641045f2391/download

Logs: https://api.biosimulations.org/logs/675423a0707aa641045f2391?includeOutput=true

View: https://api.biosimulations.org/runs/675423a0707aa641045f2391

HTTP response: 201
| +|
[BIOMD0000000895](https://www.ebi.ac.uk/biomodels/BIOMD0000000895)
Schokker2013 - A mathematical Schokker2013 - A mathematical model representing cellular immune development and response to Salmonella of chicken intestinal tissue
|
pass[Schokker2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000895#Files)
|FAIL|
pass[Schokker2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000895#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675423bd9fa297efdca1e9d3/download

Logs: https://api.biosimulations.org/logs/675423bd9fa297efdca1e9d3?includeOutput=true

View: https://api.biosimulations.org/runs/675423bd9fa297efdca1e9d3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675423ba707aa641045f23a8/download

Logs: https://api.biosimulations.org/logs/675423ba707aa641045f23a8?includeOutput=true

View: https://api.biosimulations.org/runs/675423ba707aa641045f23a8

HTTP response: 201
| +|
[BIOMD0000000896](https://www.ebi.ac.uk/biomodels/BIOMD0000000896)
Szymanska2009 - Mathematical mSzymanska2009 - Mathematical modeling of heat shock protein synthesis in response to temperature change
|
pass[Szymanska2009.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000896#Files)
|pass|
pass[Szymanska2009.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000896#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675423d8707aa641045f23c3/download

Logs: https://api.biosimulations.org/logs/675423d8707aa641045f23c3?includeOutput=true

View: https://api.biosimulations.org/runs/675423d8707aa641045f23c3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675423d59fa297efdca1e9e8/download

Logs: https://api.biosimulations.org/logs/675423d59fa297efdca1e9e8?includeOutput=true

View: https://api.biosimulations.org/runs/675423d59fa297efdca1e9e8

HTTP response: 201
| +|
[BIOMD0000000897](https://www.ebi.ac.uk/biomodels/BIOMD0000000897)
Khajanchi2015 - The combined eKhajanchi2015 - The combined effects of optimal control in cancer remission
|
pass[Khajanchi2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000897#Files)
|pass|
pass[Khajanchi2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000897#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675423f1707aa641045f23d4/download

Logs: https://api.biosimulations.org/logs/675423f1707aa641045f23d4?includeOutput=true

View: https://api.biosimulations.org/runs/675423f1707aa641045f23d4

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675423ee9fa297efdca1ea1a/download

Logs: https://api.biosimulations.org/logs/675423ee9fa297efdca1ea1a?includeOutput=true

View: https://api.biosimulations.org/runs/675423ee9fa297efdca1ea1a

HTTP response: 201
| +|
[BIOMD0000000898](https://www.ebi.ac.uk/biomodels/BIOMD0000000898)
Jiao2018 - Feedback regulationJiao2018 - Feedback regulation in a stem cell model with acute myeloid leukaemia
|
pass[Jiao2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000898#Files)
|pass|
pass[Jiao2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000898#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754240a707aa641045f23f5/download

Logs: https://api.biosimulations.org/logs/6754240a707aa641045f23f5?includeOutput=true

View: https://api.biosimulations.org/runs/6754240a707aa641045f23f5

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542407707aa641045f23f2/download

Logs: https://api.biosimulations.org/logs/67542407707aa641045f23f2?includeOutput=true

View: https://api.biosimulations.org/runs/67542407707aa641045f23f2

HTTP response: 201
| +|
[BIOMD0000000899](https://www.ebi.ac.uk/biomodels/BIOMD0000000899)
Ota2015 - Positive regulation Ota2015 - Positive regulation of Rho GTPase activity by RhoGDIs as a result of their direct interaction with GAPs (GDI integrated)
|
pass[Ota2015_GDI-integrated.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000899#Files)
|pass|
pass[Ota2015_GDI-integrated.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000899#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542426707aa641045f240a/download

Logs: https://api.biosimulations.org/logs/67542426707aa641045f240a?includeOutput=true

View: https://api.biosimulations.org/runs/67542426707aa641045f240a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675424229fa297efdca1ea48/download

Logs: https://api.biosimulations.org/logs/675424229fa297efdca1ea48?includeOutput=true

View: https://api.biosimulations.org/runs/675424229fa297efdca1ea48

HTTP response: 201
| +|
[BIOMD0000000900](https://www.ebi.ac.uk/biomodels/BIOMD0000000900)
Bianca2013 - Persistence analyBianca2013 - Persistence analysis in a Kolmogorov-type model for cancer-immune system competition
|
pass[Bianca2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000900#Files)
|pass|
pass[Bianca2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000900#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675424439fa297efdca1ea5d/download

Logs: https://api.biosimulations.org/logs/675424439fa297efdca1ea5d?includeOutput=true

View: https://api.biosimulations.org/runs/675424439fa297efdca1ea5d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754243fc3054f763d556cff/download

Logs: https://api.biosimulations.org/logs/6754243fc3054f763d556cff?includeOutput=true

View: https://api.biosimulations.org/runs/6754243fc3054f763d556cff

HTTP response: 201
| +|
[BIOMD0000000901](https://www.ebi.ac.uk/biomodels/BIOMD0000000901)
ChowHall2008 Dynamics of HumanChowHall2008 Dynamics of Human Weight Change_ODE_1
|
pass[ChowHall2008 - Dynamics of Human Weight Change.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000901#Files)
|pass|
pass[ChowHall2008 - Dynamics of Human Weight Change.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000901#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754245b707aa641045f2423/download

Logs: https://api.biosimulations.org/logs/6754245b707aa641045f2423?includeOutput=true

View: https://api.biosimulations.org/runs/6754245b707aa641045f2423

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675424589fa297efdca1ea79/download

Logs: https://api.biosimulations.org/logs/675424589fa297efdca1ea79?includeOutput=true

View: https://api.biosimulations.org/runs/675424589fa297efdca1ea79

HTTP response: 201
| +|
[BIOMD0000000902](https://www.ebi.ac.uk/biomodels/BIOMD0000000902)
Wang2019 - A mathematical modeWang2019 - A mathematical model of oncolytic virotherapy with time delay
|
pass[Wang2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000902#Files)
|pass|
pass[Wang2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000902#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675424759fa297efdca1ea8f/download

Logs: https://api.biosimulations.org/logs/675424759fa297efdca1ea8f?includeOutput=true

View: https://api.biosimulations.org/runs/675424759fa297efdca1ea8f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675424729fa297efdca1ea8c/download

Logs: https://api.biosimulations.org/logs/675424729fa297efdca1ea8c?includeOutput=true

View: https://api.biosimulations.org/runs/675424729fa297efdca1ea8c

HTTP response: 201
| +|
[BIOMD0000000903](https://www.ebi.ac.uk/biomodels/BIOMD0000000903)
Solis-perez2019 - A fractionalSolis-perez2019 - A fractional mathematical model of breast cancer competition model
|
pass[Solis-perez2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000903#Files)
|pass|
pass[Solis-perez2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000903#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754248dc3054f763d556d3c/download

Logs: https://api.biosimulations.org/logs/6754248dc3054f763d556d3c?includeOutput=true

View: https://api.biosimulations.org/runs/6754248dc3054f763d556d3c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754248ac3054f763d556d39/download

Logs: https://api.biosimulations.org/logs/6754248ac3054f763d556d39?includeOutput=true

View: https://api.biosimulations.org/runs/6754248ac3054f763d556d39

HTTP response: 201
| +|
[BIOMD0000000904](https://www.ebi.ac.uk/biomodels/BIOMD0000000904)
Admon2017 - Modelling tumor grAdmon2017 - Modelling tumor growth with immune response and drug using ordinary differential equations
|
pass[Admon2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000904#Files)
|pass|
pass[Admon2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000904#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675424a7c3054f763d556d51/download

Logs: https://api.biosimulations.org/logs/675424a7c3054f763d556d51?includeOutput=true

View: https://api.biosimulations.org/runs/675424a7c3054f763d556d51

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675424a4707aa641045f246d/download

Logs: https://api.biosimulations.org/logs/675424a4707aa641045f246d?includeOutput=true

View: https://api.biosimulations.org/runs/675424a4707aa641045f246d

HTTP response: 201
| +|
[BIOMD0000000905](https://www.ebi.ac.uk/biomodels/BIOMD0000000905)
Dubey2007 - A mathematical modDubey2007 - A mathematical model for the effect of toxicant on the immune system (with toxicant effect) Model2
|
pass[Dubey2007_model2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000905#Files)
|pass|
pass[Dubey2007_model2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000905#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675424c1c3054f763d556d65/download

Logs: https://api.biosimulations.org/logs/675424c1c3054f763d556d65?includeOutput=true

View: https://api.biosimulations.org/runs/675424c1c3054f763d556d65

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675424bdc3054f763d556d62/download

Logs: https://api.biosimulations.org/logs/675424bdc3054f763d556d62?includeOutput=true

View: https://api.biosimulations.org/runs/675424bdc3054f763d556d62

HTTP response: 201
| +|
[BIOMD0000000906](https://www.ebi.ac.uk/biomodels/BIOMD0000000906)
Dubey2007 - A mathematical modDubey2007 - A mathematical model for the effect of toxicant on the immune system (without toxicant effect) Model1
|
pass[Dubey2007_model1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000906#Files)
|pass|
pass[Dubey2007_model1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000906#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675424d7707aa641045f248a/download

Logs: https://api.biosimulations.org/logs/675424d7707aa641045f248a?includeOutput=true

View: https://api.biosimulations.org/runs/675424d7707aa641045f248a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675424d49fa297efdca1eaea/download

Logs: https://api.biosimulations.org/logs/675424d49fa297efdca1eaea?includeOutput=true

View: https://api.biosimulations.org/runs/675424d49fa297efdca1eaea

HTTP response: 201
| +|
[BIOMD0000000907](https://www.ebi.ac.uk/biomodels/BIOMD0000000907)
HeberleRazquinNavas2019 - The HeberleRazquinNavas2019 - The PI3K and MAPK/p38 pathways control stress granuleassembly in a hierarchical manner model 3
|
pass[Navas2019_model3.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000907#Files)
|FAIL|
pass[Navas2019_model3.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000907#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675425019fa297efdca1eb09/download

Logs: https://api.biosimulations.org/logs/675425019fa297efdca1eb09?includeOutput=true

View: https://api.biosimulations.org/runs/675425019fa297efdca1eb09

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675424fdc3054f763d556d87/download

Logs: https://api.biosimulations.org/logs/675424fdc3054f763d556d87?includeOutput=true

View: https://api.biosimulations.org/runs/675424fdc3054f763d556d87

HTTP response: 201
| +|
[BIOMD0000000908](https://www.ebi.ac.uk/biomodels/BIOMD0000000908)
dePillis2013 - Mathematical modePillis2013 - Mathematical modeling of regulatory T cell effects on renal cell carcinoma treatment
|
pass[dePillis2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000908#Files)
|pass|
pass[dePillis2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000908#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754251c707aa641045f24b3/download

Logs: https://api.biosimulations.org/logs/6754251c707aa641045f24b3?includeOutput=true

View: https://api.biosimulations.org/runs/6754251c707aa641045f24b3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542519c3054f763d556d9e/download

Logs: https://api.biosimulations.org/logs/67542519c3054f763d556d9e?includeOutput=true

View: https://api.biosimulations.org/runs/67542519c3054f763d556d9e

HTTP response: 201
| +|
[BIOMD0000000909](https://www.ebi.ac.uk/biomodels/BIOMD0000000909)
dePillis2003 - The dynamics ofdePillis2003 - The dynamics of an optimally controlled tumor model: A case study
|
pass[dePillis2003.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000909#Files)
|FAIL|
pass[dePillis2003.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000909#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675425369fa297efdca1eb36/download

Logs: https://api.biosimulations.org/logs/675425369fa297efdca1eb36?includeOutput=true

View: https://api.biosimulations.org/runs/675425369fa297efdca1eb36

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542533c3054f763d556dc6/download

Logs: https://api.biosimulations.org/logs/67542533c3054f763d556dc6?includeOutput=true

View: https://api.biosimulations.org/runs/67542533c3054f763d556dc6

HTTP response: 201
| +|
[BIOMD0000000910](https://www.ebi.ac.uk/biomodels/BIOMD0000000910)
Isaeva2008 - Modelling of AntiIsaeva2008 - Modelling of Anti-Tumour Immune Response Immunocorrective Effect of Weak Centimetre Electromagnetic Waves
|
pass[Isaeva2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000910#Files)
|pass|
pass[Isaeva2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000910#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675425519fa297efdca1eb47/download

Logs: https://api.biosimulations.org/logs/675425519fa297efdca1eb47?includeOutput=true

View: https://api.biosimulations.org/runs/675425519fa297efdca1eb47

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754254e9fa297efdca1eb43/download

Logs: https://api.biosimulations.org/logs/6754254e9fa297efdca1eb43?includeOutput=true

View: https://api.biosimulations.org/runs/6754254e9fa297efdca1eb43

HTTP response: 201
| +|
[BIOMD0000000911](https://www.ebi.ac.uk/biomodels/BIOMD0000000911)
Merola2008 - An insight into tMerola2008 - An insight into tumor dormancy equilibrium via the analysis of its domain of attraction
|
pass[Merola2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000911#Files)
|pass|
pass[Merola2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000911#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542569707aa641045f2502/download

Logs: https://api.biosimulations.org/logs/67542569707aa641045f2502?includeOutput=true

View: https://api.biosimulations.org/runs/67542569707aa641045f2502

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675425669fa297efdca1eb57/download

Logs: https://api.biosimulations.org/logs/675425669fa297efdca1eb57?includeOutput=true

View: https://api.biosimulations.org/runs/675425669fa297efdca1eb57

HTTP response: 201
| +|
[BIOMD0000000912](https://www.ebi.ac.uk/biomodels/BIOMD0000000912)
Caravagna2010 - Tumour suppresCaravagna2010 - Tumour suppression by immune system
|
pass[Caravagna2010.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000912#Files)
|pass|
pass[Caravagna2010.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000912#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542582c3054f763d556e09/download

Logs: https://api.biosimulations.org/logs/67542582c3054f763d556e09?includeOutput=true

View: https://api.biosimulations.org/runs/67542582c3054f763d556e09

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754257f9fa297efdca1eb6a/download

Logs: https://api.biosimulations.org/logs/6754257f9fa297efdca1eb6a?includeOutput=true

View: https://api.biosimulations.org/runs/6754257f9fa297efdca1eb6a

HTTP response: 201
| +|
[BIOMD0000000913](https://www.ebi.ac.uk/biomodels/BIOMD0000000913)
dePillis2008 - Optimal controldePillis2008 - Optimal control of mixed immunotherapy and chemotherapy of tumors
|
pass[dePillis2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000913#Files)
|pass|
pass[dePillis2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000913#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754259a9fa297efdca1eb82/download

Logs: https://api.biosimulations.org/logs/6754259a9fa297efdca1eb82?includeOutput=true

View: https://api.biosimulations.org/runs/6754259a9fa297efdca1eb82

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542597c3054f763d556e17/download

Logs: https://api.biosimulations.org/logs/67542597c3054f763d556e17?includeOutput=true

View: https://api.biosimulations.org/runs/67542597c3054f763d556e17

HTTP response: 201
| +|
[BIOMD0000000914](https://www.ebi.ac.uk/biomodels/BIOMD0000000914)
Parra_Guillen2013 - MathematiParra_Guillen2013 - Mathematical model approach to describe tumour response in mice after vaccine administration_model1
|
pass[Parra_Guillen2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000914#Files)
|FAIL|
pass[Parra_Guillen2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000914#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675425b2c3054f763d556e2f/download

Logs: https://api.biosimulations.org/logs/675425b2c3054f763d556e2f?includeOutput=true

View: https://api.biosimulations.org/runs/675425b2c3054f763d556e2f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675425af707aa641045f2543/download

Logs: https://api.biosimulations.org/logs/675425af707aa641045f2543?includeOutput=true

View: https://api.biosimulations.org/runs/675425af707aa641045f2543

HTTP response: 201
| +|
[BIOMD0000000915](https://www.ebi.ac.uk/biomodels/BIOMD0000000915)
Sun2018 - Instantaneous mutatiSun2018 - Instantaneous mutation rate in cancer initiation and progression
|
pass[Sun2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000915#Files)
|pass|
MultipleSEDMLs['Sun2018 - Instantaneous mutation rate in cancer initiation and progression.sedml', 'Sun2018.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000916](https://www.ebi.ac.uk/biomodels/BIOMD0000000916)
Kraan199_Kinetics of Cortisol Kraan199_Kinetics of Cortisol Metabolism and Excretion.
|
pass[Kraan1992.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000916#Files)
|pass|
pass[Kraan1992.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000916#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675425cf9fa297efdca1ebaf/download

Logs: https://api.biosimulations.org/logs/675425cf9fa297efdca1ebaf?includeOutput=true

View: https://api.biosimulations.org/runs/675425cf9fa297efdca1ebaf

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675425cc707aa641045f2553/download

Logs: https://api.biosimulations.org/logs/675425cc707aa641045f2553?includeOutput=true

View: https://api.biosimulations.org/runs/675425cc707aa641045f2553

HTTP response: 201
| +|
[BIOMD0000000917](https://www.ebi.ac.uk/biomodels/BIOMD0000000917)
Phillips2007_AscendingArousalSPhillips2007_AscendingArousalSystem_SleepWakeDynamics
|
pass[Phillips2007_Curated.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000917#Files)
|pass|
pass[Phillips2007.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000917#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675425eac3054f763d556e5b/download

Logs: https://api.biosimulations.org/logs/675425eac3054f763d556e5b?includeOutput=true

View: https://api.biosimulations.org/runs/675425eac3054f763d556e5b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675425e69fa297efdca1ebbe/download

Logs: https://api.biosimulations.org/logs/675425e69fa297efdca1ebbe?includeOutput=true

View: https://api.biosimulations.org/runs/675425e69fa297efdca1ebbe

HTTP response: 201
| +|
[BIOMD0000000918](https://www.ebi.ac.uk/biomodels/BIOMD0000000918)
Schwarz2018-Cdk Activity ThresSchwarz2018-Cdk Activity Threshold Determines Passage through the Restriction Point
|
pass[Schwarz2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000918#Files)
|pass|
pass[Schwarz2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000918#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542604707aa641045f257e/download

Logs: https://api.biosimulations.org/logs/67542604707aa641045f257e?includeOutput=true

View: https://api.biosimulations.org/runs/67542604707aa641045f257e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542602707aa641045f257b/download

Logs: https://api.biosimulations.org/logs/67542602707aa641045f257b?includeOutput=true

View: https://api.biosimulations.org/runs/67542602707aa641045f257b

HTTP response: 201
| +|
[BIOMD0000000920](https://www.ebi.ac.uk/biomodels/BIOMD0000000920)
Jarrett2015 - Modelling the inJarrett2015 - Modelling the interaction between immune response, bacterial dynamics and inflammatory damage
|
pass[Jarrett2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000920#Files)
|pass|
pass[Jarrett2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000920#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754261c9fa297efdca1ebeb/download

Logs: https://api.biosimulations.org/logs/6754261c9fa297efdca1ebeb?includeOutput=true

View: https://api.biosimulations.org/runs/6754261c9fa297efdca1ebeb

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542619c3054f763d556e83/download

Logs: https://api.biosimulations.org/logs/67542619c3054f763d556e83?includeOutput=true

View: https://api.biosimulations.org/runs/67542619c3054f763d556e83

HTTP response: 201
| +|[BIOMD0000000922](https://www.ebi.ac.uk/biomodels/BIOMD0000000922)
Turner2015-Human/Mosquito ELP Model|
pass[Turner2015_ELP.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000922#Files)
|pass|
pass[Turner2015_ELP.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000922#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675426379fa297efdca1ec03/download

Logs: https://api.biosimulations.org/logs/675426379fa297efdca1ec03?includeOutput=true

View: https://api.biosimulations.org/runs/675426379fa297efdca1ec03

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542634707aa641045f25a0/download

Logs: https://api.biosimulations.org/logs/67542634707aa641045f25a0?includeOutput=true

View: https://api.biosimulations.org/runs/67542634707aa641045f25a0

HTTP response: 201
| +|
[BIOMD0000000923](https://www.ebi.ac.uk/biomodels/BIOMD0000000923)
Liò2012_Modelling osteomyelitiLiò2012_Modelling osteomyelitis_Control Model
|
pass[Lio2012_Modelling osteomyelitis_Control Model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000923#Files)
|FAIL|
pass[Lio2012_Modelling osteomyelitis_Control Model.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000923#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542650707aa641045f25b5/download

Logs: https://api.biosimulations.org/logs/67542650707aa641045f25b5?includeOutput=true

View: https://api.biosimulations.org/runs/67542650707aa641045f25b5

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754264d707aa641045f25b2/download

Logs: https://api.biosimulations.org/logs/6754264d707aa641045f25b2?includeOutput=true

View: https://api.biosimulations.org/runs/6754264d707aa641045f25b2

HTTP response: 201
| +|
[BIOMD0000000924](https://www.ebi.ac.uk/biomodels/BIOMD0000000924)
Smith2011 - Three Stage InnateSmith2011 - Three Stage Innate Immune Response to a Pneumococcal Lung Infection
|
pass[Smith2011_V1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000924#Files)
|pass|
MultipleSEDMLs['Smith2011_V1.sedml', 'Smith2011_V1_Fig5.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000924](https://www.ebi.ac.uk/biomodels/BIOMD0000000924)
Smith2011 - Three Stage InnateSmith2011 - Three Stage Innate Immune Response to a Pneumococcal Lung Infection
|
pass[Smith2011_V1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000924#Files)
|pass|
MultipleSEDMLs['Smith2011_V1.sedml', 'Smith2011_V1_Fig5.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000925](https://www.ebi.ac.uk/biomodels/BIOMD0000000925)
Dunster2016 - Nondimensional CDunster2016 - Nondimensional Coagulation Model
|
pass[Dunster2016_Nondimensional_Model_Curated.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000925#Files)
|FAIL|
MultipleSEDMLs['Dunster2016_Nondimensional_Model1.sedml', 'Dunster2016_Nondimensional_Model_Curated.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000926](https://www.ebi.ac.uk/biomodels/BIOMD0000000926)
Rhodes2019 - Immune-Mediated tRhodes2019 - Immune-Mediated theory of Metastasis
|
pass[Rhodes2019-Immune-Mediated theory of Metastasis_V1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000926#Files)
|FAIL|
MultipleSEDMLs['Rhodes2019-Immune-Mediated theory of Metastasis.sedml', 'Rhodes2019-Immune-Mediated theory of Metastasis_V1.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000927](https://www.ebi.ac.uk/biomodels/BIOMD0000000927)
Grigolon2018-Responses to auxiGrigolon2018-Responses to auxin signals
|
pass[Grigolon2018_fig1b.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000927#Files)
|pass|
pass[Grigolon2018_fig1b.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000927#Files)
|pass|pass|
passDownload: https://api.biosimulations.org/results/6754267c707aa641045f25cc/download

Logs: https://api.biosimulations.org/logs/6754267c707aa641045f25cc?includeOutput=true

View: https://api.biosimulations.org/runs/6754267c707aa641045f25cc

HTTP response: 201
|
FAILDownload: https://api.biosimulations.org/results/67542679707aa641045f25c7/download

Logs: https://api.biosimulations.org/logs/67542679707aa641045f25c7?includeOutput=true

View: https://api.biosimulations.org/runs/67542679707aa641045f25c7

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :Simulation type `` not currently supported

Exception type: CombineArchiveExecutionError
| +|
[BIOMD0000000928](https://www.ebi.ac.uk/biomodels/BIOMD0000000928)
Baker2017 - The role of cytokiBaker2017 - The role of cytokines, MMPs and fibronectin fragments osteoarthritis
|
pass[Baker2017_Fig14.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000928#Files)
|FAIL|
MultipleSEDMLs['Baker2017_Fig14.a_1.sedml', 'Baker2017_Fig14.a_2.sedml', 'Baker2017_Fig14.a_3.sedml', 'Baker2017_Fig14.b_1.sedml', 'Baker2017_Fig14.b_2.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000929](https://www.ebi.ac.uk/biomodels/BIOMD0000000929)
Li2016 - Model for pancreatic Li2016 - Model for pancreatic cancer patients receiving immunotherapy
|
pass[Li2016.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000929#Files)
|pass|
pass[Li2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000929#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542748707aa641045f25f1/download

Logs: https://api.biosimulations.org/logs/67542748707aa641045f25f1?includeOutput=true

View: https://api.biosimulations.org/runs/67542748707aa641045f25f1

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675427449fa297efdca1ec5c/download

Logs: https://api.biosimulations.org/logs/675427449fa297efdca1ec5c?includeOutput=true

View: https://api.biosimulations.org/runs/675427449fa297efdca1ec5c

HTTP response: 201
| +|
[BIOMD0000000930](https://www.ebi.ac.uk/biomodels/BIOMD0000000930)
Liu2017 - chemotherapy targeteLiu2017 - chemotherapy targeted model of tumor immune system
|
pass[Liu2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000930#Files)
|pass|
pass[Liu2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000930#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675427669fa297efdca1ec84/download

Logs: https://api.biosimulations.org/logs/675427669fa297efdca1ec84?includeOutput=true

View: https://api.biosimulations.org/runs/675427669fa297efdca1ec84

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542763707aa641045f261e/download

Logs: https://api.biosimulations.org/logs/67542763707aa641045f261e?includeOutput=true

View: https://api.biosimulations.org/runs/67542763707aa641045f261e

HTTP response: 201
| +|[BIOMD0000000931](https://www.ebi.ac.uk/biomodels/BIOMD0000000931)
Voliotis2019-GnRH Pulse Generation|
pass[Voliotis2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000931#Files)
|pass|
MultipleSEDMLs['Voliotis2019-original.sedml', 'Voliotis2019.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000932](https://www.ebi.ac.uk/biomodels/BIOMD0000000932)
Garde2020-Minimal model descriGarde2020-Minimal model describing metabolic oscillations in Bacillus subtilis biofilms
|
pass[Garde2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000932#Files)
|pass|
MultipleSEDMLs['Garde2020-Fig2.sedml', 'Garde2020-Fig4.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000933](https://www.ebi.ac.uk/biomodels/BIOMD0000000933)
Kosiuk2015-Geometric analysis Kosiuk2015-Geometric analysis of the Goldbeter minimal model for the embryonic cell cycle
|
pass[Kosiuk2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000933#Files)
|pass|
pass[Kosiuk2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000933#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542782707aa641045f2639/download

Logs: https://api.biosimulations.org/logs/67542782707aa641045f2639?includeOutput=true

View: https://api.biosimulations.org/runs/67542782707aa641045f2639

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754277ec3054f763d556f1b/download

Logs: https://api.biosimulations.org/logs/6754277ec3054f763d556f1b?includeOutput=true

View: https://api.biosimulations.org/runs/6754277ec3054f763d556f1b

HTTP response: 201
| +|
[BIOMD0000000935](https://www.ebi.ac.uk/biomodels/BIOMD0000000935)
Ferrel2011 - Cdk1 and APC reguFerrel2011 - Cdk1 and APC regulation in cell cycle in Xenopus laevis
|
pass[Ferrel2011.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000935#Files)
|pass|
pass[Ferrel2011.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000935#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754279c9fa297efdca1eca7/download

Logs: https://api.biosimulations.org/logs/6754279c9fa297efdca1eca7?includeOutput=true

View: https://api.biosimulations.org/runs/6754279c9fa297efdca1eca7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542799707aa641045f2650/download

Logs: https://api.biosimulations.org/logs/67542799707aa641045f2650?includeOutput=true

View: https://api.biosimulations.org/runs/67542799707aa641045f2650

HTTP response: 201
| +|
[BIOMD0000000937](https://www.ebi.ac.uk/biomodels/BIOMD0000000937)
Ferrel2011 - Autonomous biocheFerrel2011 - Autonomous biochemical oscillator in regulation of CDK1, Plk1, and APC in Xenopus Laevis cell cycle
|
pass[Ferrel2011_V3.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000937#Files)
|pass|
pass[Ferrel2011_V3.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000937#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675427b5707aa641045f2668/download

Logs: https://api.biosimulations.org/logs/675427b5707aa641045f2668?includeOutput=true

View: https://api.biosimulations.org/runs/675427b5707aa641045f2668

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675427b2c3054f763d556f37/download

Logs: https://api.biosimulations.org/logs/675427b2c3054f763d556f37?includeOutput=true

View: https://api.biosimulations.org/runs/675427b2c3054f763d556f37

HTTP response: 201
| +|
[BIOMD0000000938](https://www.ebi.ac.uk/biomodels/BIOMD0000000938)
Gerard2013 - Model 3 - EmbryonGerard2013 - Model 3 - Embryonic-type eukaryotic Cell Cycle regulation based on negative feedback between Cdk/cyclin and APC and competitive inhibition between Cdk/cyclin and securin for polyubiquitylation_1
|
pass[Gerard2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000938#Files)
|pass|
pass[Gerard2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000938#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675427cdc3054f763d556f49/download

Logs: https://api.biosimulations.org/logs/675427cdc3054f763d556f49?includeOutput=true

View: https://api.biosimulations.org/runs/675427cdc3054f763d556f49

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675427ca707aa641045f2678/download

Logs: https://api.biosimulations.org/logs/675427ca707aa641045f2678?includeOutput=true

View: https://api.biosimulations.org/runs/675427ca707aa641045f2678

HTTP response: 201
| +|
[BIOMD0000000939](https://www.ebi.ac.uk/biomodels/BIOMD0000000939)
Iwamoto2010 - Cell cycle reponIwamoto2010 - Cell cycle reponse to DNA damage
|
pass[Iwamoto2010.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000939#Files)
|FAIL|
MultipleSEDMLs['iwamoto2010_Fig3.sedml', 'iwamoto2010_Fig4.sedml', 'iwamoto2010_Fig6.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000940](https://www.ebi.ac.uk/biomodels/BIOMD0000000940)
Tang2019 - Pharmacology modellTang2019 - Pharmacology modelling of AURKB and ZAK interaction in TNBC
|
pass[Tang2019.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000940#Files)
|pass|
pass[Tang2019.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000940#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675427e9707aa641045f2689/download

Logs: https://api.biosimulations.org/logs/675427e9707aa641045f2689?includeOutput=true

View: https://api.biosimulations.org/runs/675427e9707aa641045f2689

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675427e6707aa641045f2685/download

Logs: https://api.biosimulations.org/logs/675427e6707aa641045f2685?includeOutput=true

View: https://api.biosimulations.org/runs/675427e6707aa641045f2685

HTTP response: 201
| +|
[BIOMD0000000941](https://www.ebi.ac.uk/biomodels/BIOMD0000000941)
Gerard2010 - Progression of maGerard2010 - Progression of mammalian cell cycle by successive activation of various cyclin cdk complexes
|
pass[gerard2010.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000941#Files)
|pass|
pass[gerard2010.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000941#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542804c3054f763d556f81/download

Logs: https://api.biosimulations.org/logs/67542804c3054f763d556f81?includeOutput=true

View: https://api.biosimulations.org/runs/67542804c3054f763d556f81

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675428029fa297efdca1ecff/download

Logs: https://api.biosimulations.org/logs/675428029fa297efdca1ecff?includeOutput=true

View: https://api.biosimulations.org/runs/675428029fa297efdca1ecff

HTTP response: 201
| +|
[BIOMD0000000942](https://www.ebi.ac.uk/biomodels/BIOMD0000000942)
Sible2007 - Mitotic cell cycleSible2007 - Mitotic cell cycle mecanism in Xenopus Laevis
|
pass[Sible2007.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000942#Files)
|pass|
pass[Sible2007.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000942#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542820707aa641045f26b9/download

Logs: https://api.biosimulations.org/logs/67542820707aa641045f26b9?includeOutput=true

View: https://api.biosimulations.org/runs/67542820707aa641045f26b9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754281d9fa297efdca1ed11/download

Logs: https://api.biosimulations.org/logs/6754281d9fa297efdca1ed11?includeOutput=true

View: https://api.biosimulations.org/runs/6754281d9fa297efdca1ed11

HTTP response: 201
| +|
[BIOMD0000000943](https://www.ebi.ac.uk/biomodels/BIOMD0000000943)
Hat2016 - Reponse of p53 SysteHat2016 - Reponse of p53 System to irradiation in cell fate decision making
|
pass[Hat2016.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000943#Files)
|pass|
pass[Hat2016.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000943#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754283a707aa641045f26d1/download

Logs: https://api.biosimulations.org/logs/6754283a707aa641045f26d1?includeOutput=true

View: https://api.biosimulations.org/runs/6754283a707aa641045f26d1

HTTP response: 201
|
FAILDownload: https://api.biosimulations.org/results/675428379fa297efdca1ed1e/download

Logs: https://api.biosimulations.org/logs/675428379fa297efdca1ed1e?includeOutput=true

View: https://api.biosimulations.org/runs/675428379fa297efdca1ed1e

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :"None of ['Time'] are in the columns"

Exception type: CombineArchiveExecutionError
| +|
[BIOMD0000000944](https://www.ebi.ac.uk/biomodels/BIOMD0000000944)
Goldbeter2013-Oscillatory actiGoldbeter2013-Oscillatory activity of cyclin-dependent kinases in the cell cycle
|
pass[Goldbeter2013.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000944#Files)
|pass|
pass[Goldbeter2013.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000944#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542859707aa641045f26e6/download

Logs: https://api.biosimulations.org/logs/67542859707aa641045f26e6?includeOutput=true

View: https://api.biosimulations.org/runs/67542859707aa641045f26e6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675428569fa297efdca1ed38/download

Logs: https://api.biosimulations.org/logs/675428569fa297efdca1ed38?includeOutput=true

View: https://api.biosimulations.org/runs/675428569fa297efdca1ed38

HTTP response: 201
| +|
[BIOMD0000000945](https://www.ebi.ac.uk/biomodels/BIOMD0000000945)
Evans2004 - Cell based mathemaEvans2004 - Cell based mathematical model of topotecan
|
pass[Evans2004.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000945#Files)
|pass|
pass[Evans2004.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000945#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542875c3054f763d556fec/download

Logs: https://api.biosimulations.org/logs/67542875c3054f763d556fec?includeOutput=true

View: https://api.biosimulations.org/runs/67542875c3054f763d556fec

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542872c3054f763d556fe8/download

Logs: https://api.biosimulations.org/logs/67542872c3054f763d556fe8?includeOutput=true

View: https://api.biosimulations.org/runs/67542872c3054f763d556fe8

HTTP response: 201
| +|
[BIOMD0000000946](https://www.ebi.ac.uk/biomodels/BIOMD0000000946)
Evans2005 - Compartmental modeEvans2005 - Compartmental model for antineoplastic drug topotecan in breast cancer cells
|
pass[Evans2005.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000946#Files)
|pass|
pass[Evans2005.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000946#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754288f9fa297efdca1ed54/download

Logs: https://api.biosimulations.org/logs/6754288f9fa297efdca1ed54?includeOutput=true

View: https://api.biosimulations.org/runs/6754288f9fa297efdca1ed54

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754288cc3054f763d556fff/download

Logs: https://api.biosimulations.org/logs/6754288cc3054f763d556fff?includeOutput=true

View: https://api.biosimulations.org/runs/6754288cc3054f763d556fff

HTTP response: 201
| +|
[BIOMD0000000947](https://www.ebi.ac.uk/biomodels/BIOMD0000000947)
Lee2017 - Paracetamol first-paLee2017 - Paracetamol first-pass metabolism PK model
|
pass[Lee2017_Paracetamol_Metabolism.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000947#Files)
|pass|
pass[Evans2005.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000947#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675428a99fa297efdca1ed67/download

Logs: https://api.biosimulations.org/logs/675428a99fa297efdca1ed67?includeOutput=true

View: https://api.biosimulations.org/runs/675428a99fa297efdca1ed67

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675428a6c3054f763d55701f/download

Logs: https://api.biosimulations.org/logs/675428a6c3054f763d55701f?includeOutput=true

View: https://api.biosimulations.org/runs/675428a6c3054f763d55701f

HTTP response: 201
| +|
[BIOMD0000000948](https://www.ebi.ac.uk/biomodels/BIOMD0000000948)
Landberg2009 - AlkylresorcinolLandberg2009 - Alkylresorcinol Dose Response
|
pass[Landberg2009.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000948#Files)
|FAIL|
pass[Landberg2009.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000948#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675428c3c3054f763d557042/download

Logs: https://api.biosimulations.org/logs/675428c3c3054f763d557042?includeOutput=true

View: https://api.biosimulations.org/runs/675428c3c3054f763d557042

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675428bf9fa297efdca1ed77/download

Logs: https://api.biosimulations.org/logs/675428bf9fa297efdca1ed77?includeOutput=true

View: https://api.biosimulations.org/runs/675428bf9fa297efdca1ed77

HTTP response: 201
| +|
[BIOMD0000000949](https://www.ebi.ac.uk/biomodels/BIOMD0000000949)
Chitnis2008 - Mathematical modChitnis2008 - Mathematical model of malaria transmission
|
pass[Chitnis2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000949#Files)
|pass|
pass[Chitnis2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000949#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675428da707aa641045f2745/download

Logs: https://api.biosimulations.org/logs/675428da707aa641045f2745?includeOutput=true

View: https://api.biosimulations.org/runs/675428da707aa641045f2745

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675428d7707aa641045f2741/download

Logs: https://api.biosimulations.org/logs/675428d7707aa641045f2741?includeOutput=true

View: https://api.biosimulations.org/runs/675428d7707aa641045f2741

HTTP response: 201
| +|
[BIOMD0000000950](https://www.ebi.ac.uk/biomodels/BIOMD0000000950)
Chitnis2012 - Model Rift ValleChitnis2012 - Model Rift Valley Fever transmission between cattle and mosquitoes (Model 1)
|
pass[Chitnis2012_model_1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000950#Files)
|pass|
pass[Chitnis2012_model_1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000950#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675428f5c3054f763d557063/download

Logs: https://api.biosimulations.org/logs/675428f5c3054f763d557063?includeOutput=true

View: https://api.biosimulations.org/runs/675428f5c3054f763d557063

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675428f2707aa641045f275c/download

Logs: https://api.biosimulations.org/logs/675428f2707aa641045f275c?includeOutput=true

View: https://api.biosimulations.org/runs/675428f2707aa641045f275c

HTTP response: 201
| +|
[BIOMD0000000951](https://www.ebi.ac.uk/biomodels/BIOMD0000000951)
Mitrophanov2015 - Simulating eMitrophanov2015 - Simulating extended Hockin Blood Coagulation Model under varied pH
|
pass[Mitrophanov2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000951#Files)
|pass|
pass[Mitrophanov2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000951#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675429119fa297efdca1edc1/download

Logs: https://api.biosimulations.org/logs/675429119fa297efdca1edc1?includeOutput=true

View: https://api.biosimulations.org/runs/675429119fa297efdca1edc1

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754290e707aa641045f276c/download

Logs: https://api.biosimulations.org/logs/6754290e707aa641045f276c?includeOutput=true

View: https://api.biosimulations.org/runs/6754290e707aa641045f276c

HTTP response: 201
| +|
[BIOMD0000000952](https://www.ebi.ac.uk/biomodels/BIOMD0000000952)
Rodenfels2019 - Heat OscillatiRodenfels2019 - Heat Oscillations Driven by the Embryonic Cell Cycle Reveal the Energetic Costs of Signaling
|
pass[Rodenfels2019_V1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000952#Files)
|pass|
pass[Rodenfels2019_V1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000952#Files)
|pass|
CV_CONV_FAILURE```CVODE Error: CV_CONV_FAILURE: Convergence test failures occurred too many times (= MXNCF = 10) during one internal timestep or occurred with |h| = hmin.; In ?integrate@CVODEIntegrator@rr@@UEAANNN@Z```
|
FAILDownload: https://api.biosimulations.org/results/67542935c3054f763d557098/download

Logs: https://api.biosimulations.org/logs/67542935c3054f763d557098?includeOutput=true

View: https://api.biosimulations.org/runs/67542935c3054f763d557098

HTTP response: 201

Error message: The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: CVODE Error: CV_CONV_FAILURE: Convergence test failures occurred too many times (= MXNCF = 10) during one internal timestep or occurred with |h| = hmin.; In virtual double rr::CVODEIntegrator::integrate(double, double)

Exception type: CombineArchiveExecutionError
|
passDownload: https://api.biosimulations.org/results/67542932c3054f763d557090/download

Logs: https://api.biosimulations.org/logs/67542932c3054f763d557090?includeOutput=true

View: https://api.biosimulations.org/runs/67542932c3054f763d557090

HTTP response: 201
| +|
[BIOMD0000000953](https://www.ebi.ac.uk/biomodels/BIOMD0000000953)
Queralt2006 - Initiation of miQueralt2006 - Initiation of mitotic exit by downregulation of PP2A in budding yeast
|
pass[queralt2006_final.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000953#Files)
|FAIL|
pass[queralt2006_final.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000953#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542950707aa641045f27b1/download

Logs: https://api.biosimulations.org/logs/67542950707aa641045f27b1?includeOutput=true

View: https://api.biosimulations.org/runs/67542950707aa641045f27b1

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754294dc3054f763d5570af/download

Logs: https://api.biosimulations.org/logs/6754294dc3054f763d5570af?includeOutput=true

View: https://api.biosimulations.org/runs/6754294dc3054f763d5570af

HTTP response: 201
| +|
[BIOMD0000000954](https://www.ebi.ac.uk/biomodels/BIOMD0000000954)
Pandey2018-reversible transitiPandey2018-reversible transition between quiescence and proliferation
|
pass[Pandey2018_wildtype.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000954#Files)
|pass|
MultipleSEDMLs['Pandey2018_Figure2A.sedml', 'Pandey2018_Figure2B.sedml', 'Pandey2018_Figure2C.sedml', 'Pandey2018_Figure2D.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000000959](https://www.ebi.ac.uk/biomodels/BIOMD0000000959)
Kok2020 - IFNalpha-induced sigKok2020 - IFNalpha-induced signaling in Huh7.5 cells
|
pass[Kok2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000959#Files)
|pass|
pass[Kok2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000959#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675429709fa297efdca1ee0d/download

Logs: https://api.biosimulations.org/logs/675429709fa297efdca1ee0d?includeOutput=true

View: https://api.biosimulations.org/runs/675429709fa297efdca1ee0d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754296d9fa297efdca1ee09/download

Logs: https://api.biosimulations.org/logs/6754296d9fa297efdca1ee09?includeOutput=true

View: https://api.biosimulations.org/runs/6754296d9fa297efdca1ee09

HTTP response: 201
| +|
[BIOMD0000000961](https://www.ebi.ac.uk/biomodels/BIOMD0000000961)
McDougal2017 - Metabolism in iMcDougal2017 - Metabolism in ischemic cardiomyocytes
|
pass[McDougal2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000961#Files)
|FAIL|
pass[McDougal2017.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000961#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754299d707aa641045f27e6/download

Logs: https://api.biosimulations.org/logs/6754299d707aa641045f27e6?includeOutput=true

View: https://api.biosimulations.org/runs/6754299d707aa641045f27e6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542998707aa641045f27e3/download

Logs: https://api.biosimulations.org/logs/67542998707aa641045f27e3?includeOutput=true

View: https://api.biosimulations.org/runs/67542998707aa641045f27e3

HTTP response: 201
| +|
[BIOMD0000000963](https://www.ebi.ac.uk/biomodels/BIOMD0000000963)
Weitz2020 - SIR model of COVIDWeitz2020 - SIR model of COVID-19 transmission with shielding
|
pass[Weitz2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000963#Files)
|pass|
pass[Weitz2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000963#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675429bf707aa641045f27fe/download

Logs: https://api.biosimulations.org/logs/675429bf707aa641045f27fe?includeOutput=true

View: https://api.biosimulations.org/runs/675429bf707aa641045f27fe

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675429bc9fa297efdca1ee3d/download

Logs: https://api.biosimulations.org/logs/675429bc9fa297efdca1ee3d?includeOutput=true

View: https://api.biosimulations.org/runs/675429bc9fa297efdca1ee3d

HTTP response: 201
| +|
[BIOMD0000000964](https://www.ebi.ac.uk/biomodels/BIOMD0000000964)
Mwalili2020 - SEIR model of COMwalili2020 - SEIR model of COVID-19 transmission and environmental pathogen prevalence
|
pass[Mwalili2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000964#Files)
|FAIL|
pass[Mwalili2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000964#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675429dc707aa641045f2819/download

Logs: https://api.biosimulations.org/logs/675429dc707aa641045f2819?includeOutput=true

View: https://api.biosimulations.org/runs/675429dc707aa641045f2819

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675429d8c3054f763d5570eb/download

Logs: https://api.biosimulations.org/logs/675429d8c3054f763d5570eb?includeOutput=true

View: https://api.biosimulations.org/runs/675429d8c3054f763d5570eb

HTTP response: 201
| +|
[BIOMD0000000965](https://www.ebi.ac.uk/biomodels/BIOMD0000000965)
LeBeau1999 - IP3-dependent intLeBeau1999 - IP3-dependent intracellular calcium oscillations due to agonist stimulation from Cholecytokinin
|
pass[LeBeau1999_Phosphorylation_CCK.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000965#Files)
|FAIL|
pass[LeBeau1999_Phosphorylation_CCK.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000965#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675429f7c3054f763d55710b/download

Logs: https://api.biosimulations.org/logs/675429f7c3054f763d55710b?includeOutput=true

View: https://api.biosimulations.org/runs/675429f7c3054f763d55710b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675429f4707aa641045f2833/download

Logs: https://api.biosimulations.org/logs/675429f4707aa641045f2833?includeOutput=true

View: https://api.biosimulations.org/runs/675429f4707aa641045f2833

HTTP response: 201
| +|
[BIOMD0000000966](https://www.ebi.ac.uk/biomodels/BIOMD0000000966)
Cui2008 - in vitro transcriptiCui2008 - in vitro transcriptional response of zinc homeostasis system in Escherichia coli
|
pass[Cui2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000966#Files)
|pass|
pass[Cui2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000966#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542a11c3054f763d55711f/download

Logs: https://api.biosimulations.org/logs/67542a11c3054f763d55711f?includeOutput=true

View: https://api.biosimulations.org/runs/67542a11c3054f763d55711f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542a0d707aa641045f2852/download

Logs: https://api.biosimulations.org/logs/67542a0d707aa641045f2852?includeOutput=true

View: https://api.biosimulations.org/runs/67542a0d707aa641045f2852

HTTP response: 201
| +|
[BIOMD0000000967](https://www.ebi.ac.uk/biomodels/BIOMD0000000967)
McLean1991 - Behaviour of HIV McLean1991 - Behaviour of HIV in the presence of zidovudine
|
pass[McLean1991.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000967#Files)
|pass|
pass[McLean1991.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000967#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542a2bc3054f763d557135/download

Logs: https://api.biosimulations.org/logs/67542a2bc3054f763d557135?includeOutput=true

View: https://api.biosimulations.org/runs/67542a2bc3054f763d557135

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542a279fa297efdca1ee89/download

Logs: https://api.biosimulations.org/logs/67542a279fa297efdca1ee89?includeOutput=true

View: https://api.biosimulations.org/runs/67542a279fa297efdca1ee89

HTTP response: 201
| +|
[BIOMD0000000968](https://www.ebi.ac.uk/biomodels/BIOMD0000000968)
Palmer2008 - Negative FeedbackPalmer2008 - Negative Feedback in IL-7 mediated Jak-Stat signaling
|
pass[Palmer2008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000968#Files)
|pass|
pass[Palmer2008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000968#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542a46c3054f763d55714a/download

Logs: https://api.biosimulations.org/logs/67542a46c3054f763d55714a?includeOutput=true

View: https://api.biosimulations.org/runs/67542a46c3054f763d55714a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542a439fa297efdca1ee98/download

Logs: https://api.biosimulations.org/logs/67542a439fa297efdca1ee98?includeOutput=true

View: https://api.biosimulations.org/runs/67542a439fa297efdca1ee98

HTTP response: 201
| +|
[BIOMD0000000969](https://www.ebi.ac.uk/biomodels/BIOMD0000000969)
Cuadros2020 - SIHRD spatiotempCuadros2020 - SIHRD spatiotemporal model of COVID-19 transmission in Ohio
|
pass[Cuadros2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000969#Files)
|pass|
pass[Cuadros2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000969#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542a60c3054f763d557162/download

Logs: https://api.biosimulations.org/logs/67542a60c3054f763d557162?includeOutput=true

View: https://api.biosimulations.org/runs/67542a60c3054f763d557162

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542a5d707aa641045f288c/download

Logs: https://api.biosimulations.org/logs/67542a5d707aa641045f288c?includeOutput=true

View: https://api.biosimulations.org/runs/67542a5d707aa641045f288c

HTTP response: 201
| +|
[BIOMD0000000970](https://www.ebi.ac.uk/biomodels/BIOMD0000000970)
Hou2020 - SEIR model of COVID-Hou2020 - SEIR model of COVID-19 transmission in Wuhan
|
pass[Hou2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000970#Files)
|pass|
pass[Hou2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000970#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542a78707aa641045f289c/download

Logs: https://api.biosimulations.org/logs/67542a78707aa641045f289c?includeOutput=true

View: https://api.biosimulations.org/runs/67542a78707aa641045f289c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542a759fa297efdca1eeca/download

Logs: https://api.biosimulations.org/logs/67542a759fa297efdca1eeca?includeOutput=true

View: https://api.biosimulations.org/runs/67542a759fa297efdca1eeca

HTTP response: 201
| +|
[BIOMD0000000971](https://www.ebi.ac.uk/biomodels/BIOMD0000000971)
Tang2020 - Estimation of transTang2020 - Estimation of transmission risk of COVID-19 and impact of public health interventions
|
pass[Tang2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000971#Files)
|pass|
pass[Tang2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000971#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542a99707aa641045f28ab/download

Logs: https://api.biosimulations.org/logs/67542a99707aa641045f28ab?includeOutput=true

View: https://api.biosimulations.org/runs/67542a99707aa641045f28ab

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542a959fa297efdca1eeee/download

Logs: https://api.biosimulations.org/logs/67542a959fa297efdca1eeee?includeOutput=true

View: https://api.biosimulations.org/runs/67542a959fa297efdca1eeee

HTTP response: 201
| +|
[BIOMD0000000972](https://www.ebi.ac.uk/biomodels/BIOMD0000000972)
Tang2020 - Estimation of transTang2020 - Estimation of transmission risk of COVID-19 and impact of public health interventions - update
|
pass[Tang2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000972#Files)
|pass|
pass[Tang2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000972#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542ab2707aa641045f28bc/download

Logs: https://api.biosimulations.org/logs/67542ab2707aa641045f28bc?includeOutput=true

View: https://api.biosimulations.org/runs/67542ab2707aa641045f28bc

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542aaf9fa297efdca1ef06/download

Logs: https://api.biosimulations.org/logs/67542aaf9fa297efdca1ef06?includeOutput=true

View: https://api.biosimulations.org/runs/67542aaf9fa297efdca1ef06

HTTP response: 201
| +|
[BIOMD0000000973](https://www.ebi.ac.uk/biomodels/BIOMD0000000973)
Dasgupta2020 - Reduced model oDasgupta2020 - Reduced model of receptor clusturing and aggregation
|
pass[Dasgupta2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000973#Files)
|pass|
pass[Dasgupta2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000973#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542adc707aa641045f28e2/download

Logs: https://api.biosimulations.org/logs/67542adc707aa641045f28e2?includeOutput=true

View: https://api.biosimulations.org/runs/67542adc707aa641045f28e2

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542ad8707aa641045f28df/download

Logs: https://api.biosimulations.org/logs/67542ad8707aa641045f28df?includeOutput=true

View: https://api.biosimulations.org/runs/67542ad8707aa641045f28df

HTTP response: 201
| +|
[BIOMD0000000974](https://www.ebi.ac.uk/biomodels/BIOMD0000000974)
Carcione2020 - Deterministic SCarcione2020 - Deterministic SEIR simulation of a COVID-19 outbreak
|
pass[Carcione2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000974#Files)
|pass|
pass[Carcione2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000974#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542af6c3054f763d5571be/download

Logs: https://api.biosimulations.org/logs/67542af6c3054f763d5571be?includeOutput=true

View: https://api.biosimulations.org/runs/67542af6c3054f763d5571be

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542af3c3054f763d5571bb/download

Logs: https://api.biosimulations.org/logs/67542af3c3054f763d5571bb?includeOutput=true

View: https://api.biosimulations.org/runs/67542af3c3054f763d5571bb

HTTP response: 201
| +|
[BIOMD0000000976](https://www.ebi.ac.uk/biomodels/BIOMD0000000976)
Ghanbari2020 - forecasting theGhanbari2020 - forecasting the second wave of COVID-19 in Iran
|
pass[Ghanbari2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000976#Files)
|pass|
pass[Ghanbari2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000976#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542b0e9fa297efdca1ef44/download

Logs: https://api.biosimulations.org/logs/67542b0e9fa297efdca1ef44?includeOutput=true

View: https://api.biosimulations.org/runs/67542b0e9fa297efdca1ef44

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542b0c707aa641045f2907/download

Logs: https://api.biosimulations.org/logs/67542b0c707aa641045f2907?includeOutput=true

View: https://api.biosimulations.org/runs/67542b0c707aa641045f2907

HTTP response: 201
| +|
[BIOMD0000000977](https://www.ebi.ac.uk/biomodels/BIOMD0000000977)
Sarkar2020 - SAIR model of COVSarkar2020 - SAIR model of COVID-19 transmission with quarantine measures in India
|
pass[Sarkar2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000977#Files)
|pass|
pass[Sarkar2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000977#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542b28707aa641045f291b/download

Logs: https://api.biosimulations.org/logs/67542b28707aa641045f291b?includeOutput=true

View: https://api.biosimulations.org/runs/67542b28707aa641045f291b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542b25c3054f763d5571eb/download

Logs: https://api.biosimulations.org/logs/67542b25c3054f763d5571eb?includeOutput=true

View: https://api.biosimulations.org/runs/67542b25c3054f763d5571eb

HTTP response: 201
| +|
[BIOMD0000000978](https://www.ebi.ac.uk/biomodels/BIOMD0000000978)
Mukandavire2020 - SEIR model oMukandavire2020 - SEIR model of early COVID-19 transmission in South Africa
|
pass[Mukandavire2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000978#Files)
|pass|
pass[Mukandavire2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000978#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542b43c3054f763d557214/download

Logs: https://api.biosimulations.org/logs/67542b43c3054f763d557214?includeOutput=true

View: https://api.biosimulations.org/runs/67542b43c3054f763d557214

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542b409fa297efdca1ef7a/download

Logs: https://api.biosimulations.org/logs/67542b409fa297efdca1ef7a?includeOutput=true

View: https://api.biosimulations.org/runs/67542b409fa297efdca1ef7a

HTTP response: 201
| +|
[BIOMD0000000979](https://www.ebi.ac.uk/biomodels/BIOMD0000000979)
Malkov2020 - SEIRS model of COMalkov2020 - SEIRS model of COVID-19 transmission with reinfection
|
pass[Malkov2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000979#Files)
|pass|
pass[Malkov2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000979#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542b5ac3054f763d55722a/download

Logs: https://api.biosimulations.org/logs/67542b5ac3054f763d55722a?includeOutput=true

View: https://api.biosimulations.org/runs/67542b5ac3054f763d55722a

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542b57707aa641045f294d/download

Logs: https://api.biosimulations.org/logs/67542b57707aa641045f294d?includeOutput=true

View: https://api.biosimulations.org/runs/67542b57707aa641045f294d

HTTP response: 201
| +|
[BIOMD0000000980](https://www.ebi.ac.uk/biomodels/BIOMD0000000980)
Malkov2020 - SEIRS model of COMalkov2020 - SEIRS model of COVID-19 transmission with time-varying R values and reinfection
|
pass[Malkov2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000980#Files)
|pass|
pass[Malkov2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000980#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542b749fa297efdca1efa1/download

Logs: https://api.biosimulations.org/logs/67542b749fa297efdca1efa1?includeOutput=true

View: https://api.biosimulations.org/runs/67542b749fa297efdca1efa1

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542b719fa297efdca1ef9e/download

Logs: https://api.biosimulations.org/logs/67542b719fa297efdca1ef9e?includeOutput=true

View: https://api.biosimulations.org/runs/67542b719fa297efdca1ef9e

HTTP response: 201
| +|
[BIOMD0000000981](https://www.ebi.ac.uk/biomodels/BIOMD0000000981)
Wan2020 - risk estimation and Wan2020 - risk estimation and prediction of the transmission of COVID-19 in maninland China excluding Hubei province
|
pass[Wan2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000981#Files)
|pass|
pass[Wan2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000981#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542b8c9fa297efdca1efb7/download

Logs: https://api.biosimulations.org/logs/67542b8c9fa297efdca1efb7?includeOutput=true

View: https://api.biosimulations.org/runs/67542b8c9fa297efdca1efb7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542b8a707aa641045f297f/download

Logs: https://api.biosimulations.org/logs/67542b8a707aa641045f297f?includeOutput=true

View: https://api.biosimulations.org/runs/67542b8a707aa641045f297f

HTTP response: 201
| +|
[BIOMD0000000982](https://www.ebi.ac.uk/biomodels/BIOMD0000000982)
Law2020 - SIR model of COVID-1Law2020 - SIR model of COVID-19 transmission in Malyasia with time-varying parameters
|
pass[Law2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000982#Files)
|FAIL|
pass[Law2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000982#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542ba59fa297efdca1efd6/download

Logs: https://api.biosimulations.org/logs/67542ba59fa297efdca1efd6?includeOutput=true

View: https://api.biosimulations.org/runs/67542ba59fa297efdca1efd6

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542ba2707aa641045f2990/download

Logs: https://api.biosimulations.org/logs/67542ba2707aa641045f2990?includeOutput=true

View: https://api.biosimulations.org/runs/67542ba2707aa641045f2990

HTTP response: 201
| +|
[BIOMD0000000983](https://www.ebi.ac.uk/biomodels/BIOMD0000000983)
Zongo2020 - model of COVID-19 Zongo2020 - model of COVID-19 transmission dynamics under containment measures in France
|
pass[Zongo2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000983#Files)
|pass|
pass[Zongo2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000983#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542bbd9fa297efdca1efed/download

Logs: https://api.biosimulations.org/logs/67542bbd9fa297efdca1efed?includeOutput=true

View: https://api.biosimulations.org/runs/67542bbd9fa297efdca1efed

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542bba707aa641045f29a0/download

Logs: https://api.biosimulations.org/logs/67542bba707aa641045f29a0?includeOutput=true

View: https://api.biosimulations.org/runs/67542bba707aa641045f29a0

HTTP response: 201
| +|
[BIOMD0000000984](https://www.ebi.ac.uk/biomodels/BIOMD0000000984)
Fang2020 - SEIR model of COVIDFang2020 - SEIR model of COVID-19 transmission considering government interventions in Wuhan
|
pass[Fang2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000984#Files)
|pass|
pass[Fang2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000984#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542bd59fa297efdca1efff/download

Logs: https://api.biosimulations.org/logs/67542bd59fa297efdca1efff?includeOutput=true

View: https://api.biosimulations.org/runs/67542bd59fa297efdca1efff

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542bd2c3054f763d557288/download

Logs: https://api.biosimulations.org/logs/67542bd2c3054f763d557288?includeOutput=true

View: https://api.biosimulations.org/runs/67542bd2c3054f763d557288

HTTP response: 201
| +|
[BIOMD0000000985](https://www.ebi.ac.uk/biomodels/BIOMD0000000985)
Gex-Fabry1984 - model of recepGex-Fabry1984 - model of receptor-mediated endocytosis of EGF in BALB/c 3T3 cells
|
pass[Gex-Fabry1984.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000985#Files)
|pass|
pass[Gex-Fabry1984.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000985#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542bee707aa641045f29c9/download

Logs: https://api.biosimulations.org/logs/67542bee707aa641045f29c9?includeOutput=true

View: https://api.biosimulations.org/runs/67542bee707aa641045f29c9

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542beb9fa297efdca1f01e/download

Logs: https://api.biosimulations.org/logs/67542beb9fa297efdca1f01e?includeOutput=true

View: https://api.biosimulations.org/runs/67542beb9fa297efdca1f01e

HTTP response: 201
| +|
[BIOMD0000000986](https://www.ebi.ac.uk/biomodels/BIOMD0000000986)
Aubry1995 - Multi-compartment Aubry1995 - Multi-compartment model of fluid-phase endocytosis kinetics in Dictyostelium discoideum
|
pass[Aubry1995.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000986#Files)
|pass|
pass[Aubry1995.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000986#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542c069fa297efdca1f036/download

Logs: https://api.biosimulations.org/logs/67542c069fa297efdca1f036?includeOutput=true

View: https://api.biosimulations.org/runs/67542c069fa297efdca1f036

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542c039fa297efdca1f033/download

Logs: https://api.biosimulations.org/logs/67542c039fa297efdca1f033?includeOutput=true

View: https://api.biosimulations.org/runs/67542c039fa297efdca1f033

HTTP response: 201
| +|
[BIOMD0000000987](https://www.ebi.ac.uk/biomodels/BIOMD0000000987)
Aubry1995 - Nine-compartment mAubry1995 - Nine-compartment model of fluid-phase endocytosis kinetics in Dictyostelium discoideum
|
pass[Aubry1995.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000987#Files)
|pass|
pass[Aubry1995.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000987#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542c1dc3054f763d5572c0/download

Logs: https://api.biosimulations.org/logs/67542c1dc3054f763d5572c0?includeOutput=true

View: https://api.biosimulations.org/runs/67542c1dc3054f763d5572c0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542c1b9fa297efdca1f04d/download

Logs: https://api.biosimulations.org/logs/67542c1b9fa297efdca1f04d?includeOutput=true

View: https://api.biosimulations.org/runs/67542c1b9fa297efdca1f04d

HTTP response: 201
| +|
[BIOMD0000000988](https://www.ebi.ac.uk/biomodels/BIOMD0000000988)
Westerhoff2020 - systems bioloWesterhoff2020 - systems biology model of the coronavirus pandemic 2020
|
pass[Westerhoff2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000988#Files)
|FAIL|
pass[Westerhoff2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000988#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542c359fa297efdca1f076/download

Logs: https://api.biosimulations.org/logs/67542c359fa297efdca1f076?includeOutput=true

View: https://api.biosimulations.org/runs/67542c359fa297efdca1f076

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542c32c3054f763d5572d1/download

Logs: https://api.biosimulations.org/logs/67542c32c3054f763d5572d1?includeOutput=true

View: https://api.biosimulations.org/runs/67542c32c3054f763d5572d1

HTTP response: 201
| +|
[BIOMD0000000989](https://www.ebi.ac.uk/biomodels/BIOMD0000000989)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling - Dose dependent dynamics upon TGFb stimulation
|
pass[MODEL1712050001.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000989#Files)
|FAIL|
pass[MODEL1712050001.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000989#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542c509fa297efdca1f08e/download

Logs: https://api.biosimulations.org/logs/67542c509fa297efdca1f08e?includeOutput=true

View: https://api.biosimulations.org/runs/67542c509fa297efdca1f08e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542c4d707aa641045f2a18/download

Logs: https://api.biosimulations.org/logs/67542c4d707aa641045f2a18?includeOutput=true

View: https://api.biosimulations.org/runs/67542c4d707aa641045f2a18

HTTP response: 201
| +|
[BIOMD0000000990](https://www.ebi.ac.uk/biomodels/BIOMD0000000990)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling - Degradation of 25pM ligand (TGFb)
|
pass[MODEL1712050002.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000990#Files)
|FAIL|
pass[MODEL1712050002.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000990#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542c73c3054f763d5572fc/download

Logs: https://api.biosimulations.org/logs/67542c73c3054f763d5572fc?includeOutput=true

View: https://api.biosimulations.org/runs/67542c73c3054f763d5572fc

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542c70c3054f763d5572f9/download

Logs: https://api.biosimulations.org/logs/67542c70c3054f763d5572f9?includeOutput=true

View: https://api.biosimulations.org/runs/67542c70c3054f763d5572f9

HTTP response: 201
| +|
[BIOMD0000000991](https://www.ebi.ac.uk/biomodels/BIOMD0000000991)
Okuonghae2020 - SEAIR model ofOkuonghae2020 - SEAIR model of COVID-19 transmission in Lagos, Nigeria
|
pass[Okuonghae2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000991#Files)
|FAIL|
pass[Okuonghae2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000991#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542c95707aa641045f2a45/download

Logs: https://api.biosimulations.org/logs/67542c95707aa641045f2a45?includeOutput=true

View: https://api.biosimulations.org/runs/67542c95707aa641045f2a45

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542c91c3054f763d557314/download

Logs: https://api.biosimulations.org/logs/67542c91c3054f763d557314?includeOutput=true

View: https://api.biosimulations.org/runs/67542c91c3054f763d557314

HTTP response: 201
| +|
[BIOMD0000000994](https://www.ebi.ac.uk/biomodels/BIOMD0000000994)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling - Restimulation with 5pM TGFb at 3hr
|
pass[MODEL1712050003.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000994#Files)
|FAIL|
pass[MODEL1712050003.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000994#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542cafc3054f763d557329/download

Logs: https://api.biosimulations.org/logs/67542cafc3054f763d557329?includeOutput=true

View: https://api.biosimulations.org/runs/67542cafc3054f763d557329

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542cac9fa297efdca1f0bf/download

Logs: https://api.biosimulations.org/logs/67542cac9fa297efdca1f0bf?includeOutput=true

View: https://api.biosimulations.org/runs/67542cac9fa297efdca1f0bf

HTTP response: 201
| +|
[BIOMD0000000995](https://www.ebi.ac.uk/biomodels/BIOMD0000000995)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling - Restimulation with 5pM TGFb at 8hr
|
pass[MODEL1712050004.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000995#Files)
|FAIL|
pass[MODEL1712050004.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000995#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542cc8707aa641045f2a76/download

Logs: https://api.biosimulations.org/logs/67542cc8707aa641045f2a76?includeOutput=true

View: https://api.biosimulations.org/runs/67542cc8707aa641045f2a76

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542cc5707aa641045f2a72/download

Logs: https://api.biosimulations.org/logs/67542cc5707aa641045f2a72?includeOutput=true

View: https://api.biosimulations.org/runs/67542cc5707aa641045f2a72

HTTP response: 201
| +|
[BIOMD0000000996](https://www.ebi.ac.uk/biomodels/BIOMD0000000996)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling - Restimulation with 100pM TGFb at 6hr
|
pass[MODEL1712050005.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000996#Files)
|FAIL|
pass[MODEL1712050005.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000996#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542ce4c3054f763d55734f/download

Logs: https://api.biosimulations.org/logs/67542ce4c3054f763d55734f?includeOutput=true

View: https://api.biosimulations.org/runs/67542ce4c3054f763d55734f

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542ce1707aa641045f2a84/download

Logs: https://api.biosimulations.org/logs/67542ce1707aa641045f2a84?includeOutput=true

View: https://api.biosimulations.org/runs/67542ce1707aa641045f2a84

HTTP response: 201
| +|
[BIOMD0000000997](https://www.ebi.ac.uk/biomodels/BIOMD0000000997)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling - DRB treatment
|
pass[MODEL1712050006.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000997#Files)
|FAIL|
pass[MODEL1712050006.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000997#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542cff9fa297efdca1f105/download

Logs: https://api.biosimulations.org/logs/67542cff9fa297efdca1f105?includeOutput=true

View: https://api.biosimulations.org/runs/67542cff9fa297efdca1f105

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542cfbc3054f763d557367/download

Logs: https://api.biosimulations.org/logs/67542cfbc3054f763d557367?includeOutput=true

View: https://api.biosimulations.org/runs/67542cfbc3054f763d557367

HTTP response: 201
| +|
[BIOMD0000000998](https://www.ebi.ac.uk/biomodels/BIOMD0000000998)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling Class 1
|
pass[MODEL1712050007.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000998#Files)
|FAIL|
pass[MODEL1712050007.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000998#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542d19707aa641045f2ab2/download

Logs: https://api.biosimulations.org/logs/67542d19707aa641045f2ab2?includeOutput=true

View: https://api.biosimulations.org/runs/67542d19707aa641045f2ab2

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542d16707aa641045f2aaf/download

Logs: https://api.biosimulations.org/logs/67542d16707aa641045f2aaf?includeOutput=true

View: https://api.biosimulations.org/runs/67542d16707aa641045f2aaf

HTTP response: 201
| +|
[BIOMD0000000999](https://www.ebi.ac.uk/biomodels/BIOMD0000000999)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling Class 2
|
pass[MODEL1712050008.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000000999#Files)
|FAIL|
pass[MODEL1712050008.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000000999#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542d35707aa641045f2ac5/download

Logs: https://api.biosimulations.org/logs/67542d35707aa641045f2ac5?includeOutput=true

View: https://api.biosimulations.org/runs/67542d35707aa641045f2ac5

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542d339fa297efdca1f12a/download

Logs: https://api.biosimulations.org/logs/67542d339fa297efdca1f12a?includeOutput=true

View: https://api.biosimulations.org/runs/67542d339fa297efdca1f12a

HTTP response: 201
| +|
[BIOMD0000001000](https://www.ebi.ac.uk/biomodels/BIOMD0000001000)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling Class 3
|
pass[MODEL1712050009.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001000#Files)
|FAIL|
pass[MODEL1712050009.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001000#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542d50707aa641045f2adf/download

Logs: https://api.biosimulations.org/logs/67542d50707aa641045f2adf?includeOutput=true

View: https://api.biosimulations.org/runs/67542d50707aa641045f2adf

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542d4dc3054f763d5573a9/download

Logs: https://api.biosimulations.org/logs/67542d4dc3054f763d5573a9?includeOutput=true

View: https://api.biosimulations.org/runs/67542d4dc3054f763d5573a9

HTTP response: 201
| +|
[BIOMD0000001001](https://www.ebi.ac.uk/biomodels/BIOMD0000001001)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling Class 4
|
pass[MODEL1712050010.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001001#Files)
|FAIL|
pass[MODEL1712050010.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001001#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542d6b707aa641045f2af7/download

Logs: https://api.biosimulations.org/logs/67542d6b707aa641045f2af7?includeOutput=true

View: https://api.biosimulations.org/runs/67542d6b707aa641045f2af7

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542d689fa297efdca1f14e/download

Logs: https://api.biosimulations.org/logs/67542d689fa297efdca1f14e?includeOutput=true

View: https://api.biosimulations.org/runs/67542d689fa297efdca1f14e

HTTP response: 201
| +|
[BIOMD0000001002](https://www.ebi.ac.uk/biomodels/BIOMD0000001002)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling Class 5
|
pass[MODEL1712050011.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001002#Files)
|FAIL|
pass[MODEL1712050011.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001002#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542d87c3054f763d5573d1/download

Logs: https://api.biosimulations.org/logs/67542d87c3054f763d5573d1?includeOutput=true

View: https://api.biosimulations.org/runs/67542d87c3054f763d5573d1

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542d849fa297efdca1f15d/download

Logs: https://api.biosimulations.org/logs/67542d849fa297efdca1f15d?includeOutput=true

View: https://api.biosimulations.org/runs/67542d849fa297efdca1f15d

HTTP response: 201
| +|
[BIOMD0000001003](https://www.ebi.ac.uk/biomodels/BIOMD0000001003)
Strasen2018 - TGFb SMAD SignalStrasen2018 - TGFb SMAD Signalling Class 6
|
pass[MODEL17120500012.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001003#Files)
|FAIL|
pass[MODEL17120500012.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001003#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542da1707aa641045f2b32/download

Logs: https://api.biosimulations.org/logs/67542da1707aa641045f2b32?includeOutput=true

View: https://api.biosimulations.org/runs/67542da1707aa641045f2b32

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542d9e707aa641045f2b2f/download

Logs: https://api.biosimulations.org/logs/67542d9e707aa641045f2b2f?includeOutput=true

View: https://api.biosimulations.org/runs/67542d9e707aa641045f2b2f

HTTP response: 201
| +|
[BIOMD0000001004](https://www.ebi.ac.uk/biomodels/BIOMD0000001004)
Intosalmi2015 - Th17 core netwIntosalmi2015 - Th17 core network model
|
pass[Intosalmi2015.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001004#Files)
|pass|
pass[Intosalmi2015.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001004#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542dbbc3054f763d55740c/download

Logs: https://api.biosimulations.org/logs/67542dbbc3054f763d55740c?includeOutput=true

View: https://api.biosimulations.org/runs/67542dbbc3054f763d55740c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542db8707aa641045f2b63/download

Logs: https://api.biosimulations.org/logs/67542db8707aa641045f2b63?includeOutput=true

View: https://api.biosimulations.org/runs/67542db8707aa641045f2b63

HTTP response: 201
| +|
[BIOMD0000001005](https://www.ebi.ac.uk/biomodels/BIOMD0000001005)
Bae2017 - Mathematical analysiBae2017 - Mathematical analysis of circadian disruption and metabolic re-entrainment of hepatic gluconeogenesis
|
pass[Bae2018.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001005#Files)
|FAIL|
pass[Bae2018.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001005#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542dd5c3054f763d557432/download

Logs: https://api.biosimulations.org/logs/67542dd5c3054f763d557432?includeOutput=true

View: https://api.biosimulations.org/runs/67542dd5c3054f763d557432

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542dd2c3054f763d55742f/download

Logs: https://api.biosimulations.org/logs/67542dd2c3054f763d55742f?includeOutput=true

View: https://api.biosimulations.org/runs/67542dd2c3054f763d55742f

HTTP response: 201
| +|
[BIOMD0000001006](https://www.ebi.ac.uk/biomodels/BIOMD0000001006)
Ciliberto2005 - Steady states Ciliberto2005 - Steady states and oscillations in the p53/Mdm2 network
|
pass[Ciliberto2005.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001006#Files)
|pass|
pass[Ciliberto2005.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001006#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67542ded707aa641045f2b89/download

Logs: https://api.biosimulations.org/logs/67542ded707aa641045f2b89?includeOutput=true

View: https://api.biosimulations.org/runs/67542ded707aa641045f2b89

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67542deac3054f763d55744a/download

Logs: https://api.biosimulations.org/logs/67542deac3054f763d55744a?includeOutput=true

View: https://api.biosimulations.org/runs/67542deac3054f763d55744a

HTTP response: 201
| +|
[BIOMD0000001007](https://www.ebi.ac.uk/biomodels/BIOMD0000001007)
Zhang2007 - Mechanism of DNA dZhang2007 - Mechanism of DNA damage response (Model1)
|
pass[Zhang2007_M1_lowDD.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001007#Files)
|pass|
MultipleSEDMLs['Zhang2007_M1_highDD.sedml', 'Zhang2007_M1_lowDD.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000001008](https://www.ebi.ac.uk/biomodels/BIOMD0000001008)
Scaramellini1997 - Two-receptoScaramellini1997 - Two-receptor:One-transducer (2R1T) model for analysis of interactions between agonists
|
pass[Scaramellini1997.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001008#Files)
|pass|
pass[Scaramellini1997.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001008#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
ERRORDownload: https://api.biosimulations.org/results/67542e08c3054f763d557462/download

Logs: https://api.biosimulations.org/logs/67542e08c3054f763d557462?includeOutput=true

View: https://api.biosimulations.org/runs/67542e08c3054f763d557462

HTTP response: 201

Error message: log_yml key not found

Exception type: KeyError
|
ERRORDownload: https://api.biosimulations.org/results/67542e05c3054f763d55745e/download

Logs: https://api.biosimulations.org/logs/67542e05c3054f763d55745e?includeOutput=true

View: https://api.biosimulations.org/runs/67542e05c3054f763d55745e

HTTP response: 201

Error message: log_yml key not found

Exception type: KeyError
| +|
[BIOMD0000001009](https://www.ebi.ac.uk/biomodels/BIOMD0000001009)
Zhang2007 - Mechanism of DNA dZhang2007 - Mechanism of DNA damage response (Model2)
|
pass[Zhang2007_M2_low_dose.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001009#Files)
|pass|
MultipleSEDMLs['Zhang2007_M2_high_dose.sedml', 'Zhang2007_M2_low_dose.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000001010](https://www.ebi.ac.uk/biomodels/BIOMD0000001010)
Zhang2007 - Mechanism of DNA dZhang2007 - Mechanism of DNA damage response (Model3)
|
pass[Zhang2007_M3_low_DD.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001010#Files)
|pass|
MultipleSEDMLs['Zhang2007_M3_high_DD.sedml', 'Zhang2007_M3_low_DD.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000001011](https://www.ebi.ac.uk/biomodels/BIOMD0000001011)
Leon-Triana2020 - CAR T-cell tLeon-Triana2020 - CAR T-cell therapy in B-cell acute lymphoblastic leukaemia
|
pass[Leon-Triana2020 (eqs 4).xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001011#Files)
|FAIL|
pass[Leon-Triana2020 (eqs 4).sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001011#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675432c5c3054f763d5575cd/download

Logs: https://api.biosimulations.org/logs/675432c5c3054f763d5575cd?includeOutput=true

View: https://api.biosimulations.org/runs/675432c5c3054f763d5575cd

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675432c39fa297efdca1f305/download

Logs: https://api.biosimulations.org/logs/675432c39fa297efdca1f305?includeOutput=true

View: https://api.biosimulations.org/runs/675432c39fa297efdca1f305

HTTP response: 201
| +|
[BIOMD0000001012](https://www.ebi.ac.uk/biomodels/BIOMD0000001012)
Leon-Triana2020 - CAR T-cell tLeon-Triana2020 - CAR T-cell therapy in B-cell acute lymphoblastic leukaemia with contribution from immature B cells
|
pass[Leon-Triana2020 (eqs 3).xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001012#Files)
|FAIL|
pass[Leon-Triana2020 (eqs 3).sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001012#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675432f8707aa641045f2d12/download

Logs: https://api.biosimulations.org/logs/675432f8707aa641045f2d12?includeOutput=true

View: https://api.biosimulations.org/runs/675432f8707aa641045f2d12

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675432f5707aa641045f2d0f/download

Logs: https://api.biosimulations.org/logs/675432f5707aa641045f2d0f?includeOutput=true

View: https://api.biosimulations.org/runs/675432f5707aa641045f2d0f

HTTP response: 201
| +|
[BIOMD0000001013](https://www.ebi.ac.uk/biomodels/BIOMD0000001013)
Leon-Triana2021 - Competition Leon-Triana2021 - Competition between tumour cells and single-target CAR T-cells
|
pass[Leon-Triana2021 - eqs 1 and 2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001013#Files)
|FAIL|
MultipleSEDMLs['Leon-Triana2021 - eqs 1 and 2 - fig 1 - a and c.sedml', 'Leon-Triana2021 - eqs 1 and 2 - fig 1 - b and d.sedml', 'Leon-Triana2021 - eqs 1 and 2 - fig 3a.sedml', 'Leon-Triana2021 - eqs 1 and 2 - fig 3b.sedml', 'Leon-Triana2021 - eqs 1 and 2 - fig 4a.sedml', 'Leon-Triana2021 - eqs 1 and 2 - fig 4b.sedml', 'Leon-Triana2021 - eqs 1 and 2 - fig 4c.sedml', 'Leon-Triana2021 - eqs 1 and 2 - fig 5a.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000001014](https://www.ebi.ac.uk/biomodels/BIOMD0000001014)
Leon-Triana2021 - Competition Leon-Triana2021 - Competition between tumour cells and dual-target CAR T-cells
|
pass[Leon-Triana2021 (eqs 3-6).xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001014#Files)
|FAIL|
pass[Leon-Triana2021 (eqs 3-6).sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001014#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754330f9fa297efdca1f348/download

Logs: https://api.biosimulations.org/logs/6754330f9fa297efdca1f348?includeOutput=true

View: https://api.biosimulations.org/runs/6754330f9fa297efdca1f348

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754330d707aa641045f2d23/download

Logs: https://api.biosimulations.org/logs/6754330d707aa641045f2d23?includeOutput=true

View: https://api.biosimulations.org/runs/6754330d707aa641045f2d23

HTTP response: 201
| +|
[BIOMD0000001015](https://www.ebi.ac.uk/biomodels/BIOMD0000001015)
Jarrah2014 - mathematical modeJarrah2014 - mathematical model of the immune response in muscle degeneration and subsequent regeneration in Duchenne muscular dystrophy in mdx mice
|
pass[Jarrah2014.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001015#Files)
|pass|
pass[Jarrah2014.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001015#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675433279fa297efdca1f36c/download

Logs: https://api.biosimulations.org/logs/675433279fa297efdca1f36c?includeOutput=true

View: https://api.biosimulations.org/runs/675433279fa297efdca1f36c

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675433259fa297efdca1f369/download

Logs: https://api.biosimulations.org/logs/675433259fa297efdca1f369?includeOutput=true

View: https://api.biosimulations.org/runs/675433259fa297efdca1f369

HTTP response: 201
| +|
[BIOMD0000001016](https://www.ebi.ac.uk/biomodels/BIOMD0000001016)
Bakshi2020 - Truncated minimalBakshi2020 - Truncated minimal model of alternative pathway of complement system
|
pass[Bakshi2020 truncated minimal model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001016#Files)
|FAIL|
pass[Bakshi2020 truncated minimal model.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001016#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754333e707aa641045f2d44/download

Logs: https://api.biosimulations.org/logs/6754333e707aa641045f2d44?includeOutput=true

View: https://api.biosimulations.org/runs/6754333e707aa641045f2d44

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754333cc3054f763d55761a/download

Logs: https://api.biosimulations.org/logs/6754333cc3054f763d55761a?includeOutput=true

View: https://api.biosimulations.org/runs/6754333cc3054f763d55761a

HTTP response: 201
| +|
[BIOMD0000001017](https://www.ebi.ac.uk/biomodels/BIOMD0000001017)
Bakshi2020 - Minimal model of Bakshi2020 - Minimal model of alternative pathway of complement system
|
pass[Bakshi2020 minimal model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001017#Files)
|FAIL|
pass[Bakshi2020 minimal model.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001017#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67543351c3054f763d557638/download

Logs: https://api.biosimulations.org/logs/67543351c3054f763d557638?includeOutput=true

View: https://api.biosimulations.org/runs/67543351c3054f763d557638

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754334f9fa297efdca1f386/download

Logs: https://api.biosimulations.org/logs/6754334f9fa297efdca1f386?includeOutput=true

View: https://api.biosimulations.org/runs/6754334f9fa297efdca1f386

HTTP response: 201
| +|
[BIOMD0000001018](https://www.ebi.ac.uk/biomodels/BIOMD0000001018)
Bakshi2020 - Properdin model oBakshi2020 - Properdin model of alternative pathway of complement system
|
pass[Bakshi2020 properdin model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001018#Files)
|FAIL|
pass[Bakshi2020 properdin model.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001018#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675433689fa297efdca1f3aa/download

Logs: https://api.biosimulations.org/logs/675433689fa297efdca1f3aa?includeOutput=true

View: https://api.biosimulations.org/runs/675433689fa297efdca1f3aa

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67543366c3054f763d557649/download

Logs: https://api.biosimulations.org/logs/67543366c3054f763d557649?includeOutput=true

View: https://api.biosimulations.org/runs/67543366c3054f763d557649

HTTP response: 201
| +|
[BIOMD0000001019](https://www.ebi.ac.uk/biomodels/BIOMD0000001019)
Barros2021 - CARTmath, MathemaBarros2021 - CARTmath, Mathematical Model of CAR-T Immunotherapy in HDLM-2 cell line
|
pass[Barros2021_HDLM2.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001019#Files)
|FAIL|
pass[Barros2021_HDLM2.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001019#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754338a9fa297efdca1f3c0/download

Logs: https://api.biosimulations.org/logs/6754338a9fa297efdca1f3c0?includeOutput=true

View: https://api.biosimulations.org/runs/6754338a9fa297efdca1f3c0

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67543388c3054f763d557665/download

Logs: https://api.biosimulations.org/logs/67543388c3054f763d557665?includeOutput=true

View: https://api.biosimulations.org/runs/67543388c3054f763d557665

HTTP response: 201
| +|
[BIOMD0000001020](https://www.ebi.ac.uk/biomodels/BIOMD0000001020)
Barros2021 - CARTmath, MathemaBarros2021 - CARTmath, Mathematical Model of CAR-T Immunotherapy in Raji Cell Line
|
pass[Barros2021_RAJI.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001020#Files)
|FAIL|
pass[Barros2021_RAJI.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001020#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754339e9fa297efdca1f3d8/download

Logs: https://api.biosimulations.org/logs/6754339e9fa297efdca1f3d8?includeOutput=true

View: https://api.biosimulations.org/runs/6754339e9fa297efdca1f3d8

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754339c707aa641045f2da3/download

Logs: https://api.biosimulations.org/logs/6754339c707aa641045f2da3?includeOutput=true

View: https://api.biosimulations.org/runs/6754339c707aa641045f2da3

HTTP response: 201
| +|
[BIOMD0000001021](https://www.ebi.ac.uk/biomodels/BIOMD0000001021)
Lavigne2021 - Non-spatial modeLavigne2021 - Non-spatial model of viral infection dynamics and interferon response of well-mixed viral infection
|
pass[Lavigne2021 - ODE model.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001021#Files)
|FAIL|
MultipleSEDMLs['Lavigne2021 - ODE model (no IFN condition).sedml', 'Lavigne2021 - ODE model (paracrine only condition).sedml', 'Lavigne2021 - ODE model (with IFN condition).sedml']
|NA|NA|NA|NA| +|
[BIOMD0000001022](https://www.ebi.ac.uk/biomodels/BIOMD0000001022)
Creemers2021 - Tumor-immune dyCreemers2021 - Tumor-immune dynamics and implications on immunotherapy responses
|
pass[Creemers2021.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001022#Files)
|FAIL|
MultipleSEDMLs['Creemers2021 - Fig 1(B).sedml', 'Creemers2021 - Fig 1(C).sedml', 'Creemers2021 - Fig 1(D).sedml', 'Creemers2021 - Fig 2(A) inset 1.sedml', 'Creemers2021 - Fig 2(A) inset 2.sedml', 'Creemers2021 - Fig 2(B) inset 1.sedml', 'Creemers2021 - Fig 2(B) inset 2.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000001023](https://www.ebi.ac.uk/biomodels/BIOMD0000001023)
Alharbi2020 - An ODE-based modAlharbi2020 - An ODE-based model of the dynamics of tumor cell progression and its effects on normal cell growth and immune system functionality
|
pass[Alharbi2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001023#Files)
|pass|
pass[Alharbi2020 - Fig 5.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001023#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675433b6707aa641045f2dbc/download

Logs: https://api.biosimulations.org/logs/675433b6707aa641045f2dbc?includeOutput=true

View: https://api.biosimulations.org/runs/675433b6707aa641045f2dbc

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675433b4707aa641045f2db9/download

Logs: https://api.biosimulations.org/logs/675433b4707aa641045f2db9?includeOutput=true

View: https://api.biosimulations.org/runs/675433b4707aa641045f2db9

HTTP response: 201
| +|
[BIOMD0000001024](https://www.ebi.ac.uk/biomodels/BIOMD0000001024)
Chaudhury2020 - Lotka-VolterraChaudhury2020 - Lotka-Volterra mathematical model of CAR-T cell and tumour kinetics
|
pass[Chaudhury2020 Eq 4-5.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001024#Files)
|FAIL|
pass[Chaudhury2020 Eq 4-5 - Fig 3(C) simulation.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001024#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675433ca707aa641045f2dce/download

Logs: https://api.biosimulations.org/logs/675433ca707aa641045f2dce?includeOutput=true

View: https://api.biosimulations.org/runs/675433ca707aa641045f2dce

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675433c8c3054f763d55769b/download

Logs: https://api.biosimulations.org/logs/675433c8c3054f763d55769b?includeOutput=true

View: https://api.biosimulations.org/runs/675433c8c3054f763d55769b

HTTP response: 201
| +|
[BIOMD0000001025](https://www.ebi.ac.uk/biomodels/BIOMD0000001025)
Chaudhury2020 - EC50 expansionChaudhury2020 - EC50 expansion and killing mathematical model of CAR-T cell and tumour kinetics
|
pass[Chaudhury2020 Eq 7-9.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001025#Files)
|pass|
MultipleSEDMLs['Chaudhury2020 Eq 7-9 - Fig 3(A) simulation.sedml', 'Chaudhury2020 Eq 7-9 - Fig 3(B) simulation.sedml', 'Chaudhury2020 Eq 7-9 - Fig 4(A) simulation.sedml', 'Chaudhury2020 Eq 7-9 - Fig 4(B) simulation.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000001026](https://www.ebi.ac.uk/biomodels/BIOMD0000001026)
Kurlovics2021 - Metformin partKurlovics2021 - Metformin partitioning between plasma and RBC with independent Kin and Kout coefficients
|
pass[Kurlovics2021.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001026#Files)
|pass|
MultipleSEDMLs['Independent.sedml', 'Kurlovics2021.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000001027](https://www.ebi.ac.uk/biomodels/BIOMD0000001027)
Zake2021 - PBPK model of metfoZake2021 - PBPK model of metformin in mice: single dose peroral
|
pass[Zake2021_Metformin_Mice_PO.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001027#Files)
|pass|
MultipleSEDMLs['Zake2021 - PBPK Metformin Mice PO single dose.sedml', 'Zake2021_Metformin_Mice_PO.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000001028](https://www.ebi.ac.uk/biomodels/BIOMD0000001028)
Zake2021 - PBPK model of metfoZake2021 - PBPK model of metformin in humans, single PO dose
|
pass[Zake2021_Metformin_Human_single_PO_dose.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001028#Files)
|pass|
MultipleSEDMLs['Zake2021 - PBPK Metformin Human single PO dose.sedml', 'Zake2021_Metformin_Human_single_PO_dose.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000001029](https://www.ebi.ac.uk/biomodels/BIOMD0000001029)
Zake2021 - PBPK model of metfoZake2021 - PBPK model of metformin in humans, eight PO administrations with 12h interval
|
pass[Zake2021_Metformin_Human_multiple_PO_dose.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001029#Files)
|pass|
MultipleSEDMLs['Zake2021 - PBPK Metformin Human multiple PO dose.sedml', 'Zake2021_Metformin_Human_multiple_PO_dose.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000001030](https://www.ebi.ac.uk/biomodels/BIOMD0000001030)
Sontag2017 - Dynamic model of Sontag2017 - Dynamic model of immune responses to antigen presentation by tumor or pathogen
|
pass[Sontag2017.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001030#Files)
|FAIL|
MultipleSEDMLs['Sontag2017 - Fig 1D new constant value simulation.sedml', 'Sontag2017 - Fig 1D shifted exponential simulation.sedml', 'Sontag2017 - Fig 1D shifted ramp simulation.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000001031](https://www.ebi.ac.uk/biomodels/BIOMD0000001031)
Al-Tuwairqi2020 - Dynamics of Al-Tuwairqi2020 - Dynamics of cancer virotherapy - Phase I treatment
|
pass[Al-Tuwairqi2020 - Phase I virotherapy.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001031#Files)
|FAIL|
MultipleSEDMLs['Al-Tuwairqi2020 - Fig2a simulation.sedml', 'Al-Tuwairqi2020 - Fig2b simulation.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000001032](https://www.ebi.ac.uk/biomodels/BIOMD0000001032)
Al-Tuwairqi2020 - Dynamics of Al-Tuwairqi2020 - Dynamics of cancer radiovirotherapy - Phase II treatment
|
pass[Al-Tuwairqi2020 - Phase II radiovirotherapy treatment.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001032#Files)
|FAIL|
pass[Al-Tuwairqi2020 - Fig8 simulation.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001032#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675433ed9fa297efdca1f433/download

Logs: https://api.biosimulations.org/logs/675433ed9fa297efdca1f433?includeOutput=true

View: https://api.biosimulations.org/runs/675433ed9fa297efdca1f433

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675433eb9fa297efdca1f430/download

Logs: https://api.biosimulations.org/logs/675433eb9fa297efdca1f430?includeOutput=true

View: https://api.biosimulations.org/runs/675433eb9fa297efdca1f430

HTTP response: 201
| +|
[BIOMD0000001033](https://www.ebi.ac.uk/biomodels/BIOMD0000001033)
Almuallem2020 - Virus-macrophaAlmuallem2020 - Virus-macrophage-tumour interactions in oncolytic viral therapies
|
pass[Almuallem2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001033#Files)
|pass|
pass[Almuallem2020 - Fig6.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001033#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67543406c3054f763d5576c8/download

Logs: https://api.biosimulations.org/logs/67543406c3054f763d5576c8?includeOutput=true

View: https://api.biosimulations.org/runs/67543406c3054f763d5576c8

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67543403707aa641045f2e11/download

Logs: https://api.biosimulations.org/logs/67543403707aa641045f2e11?includeOutput=true

View: https://api.biosimulations.org/runs/67543403707aa641045f2e11

HTTP response: 201
| +|
[BIOMD0000001034](https://www.ebi.ac.uk/biomodels/BIOMD0000001034)
Bunimovich-Mendrazitsky2007 - Bunimovich-Mendrazitsky2007 - Mathematical model of BCG immunotherapy
|
pass[Bunimovich-Mendrazitsky2007.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001034#Files)
|pass|
pass[Bunimovich-Mendrazitsky2007 - Fig4.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001034#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754341c707aa641045f2e23/download

Logs: https://api.biosimulations.org/logs/6754341c707aa641045f2e23?includeOutput=true

View: https://api.biosimulations.org/runs/6754341c707aa641045f2e23

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754341a9fa297efdca1f460/download

Logs: https://api.biosimulations.org/logs/6754341a9fa297efdca1f460?includeOutput=true

View: https://api.biosimulations.org/runs/6754341a9fa297efdca1f460

HTTP response: 201
| +|
[BIOMD0000001035](https://www.ebi.ac.uk/biomodels/BIOMD0000001035)
Al-Tuwairqi2020 - Dynamics of Al-Tuwairqi2020 - Dynamics of cancer virotherapy with immune response
|
pass[Al-Tuwairqi2020 - Virotherapy.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001035#Files)
|pass|
MultipleSEDMLs['Al-Tuwairqi2020 - Fig2(a) simulation.sedml', 'Al-Tuwairqi2020 - Fig2(b) simulation.sedml', 'Al-Tuwairqi2020 - Fig2(c) simulation.sedml', 'Al-Tuwairqi2020 - Fig7(a) simulation.sedml', 'Al-Tuwairqi2020 - Fig7(b) simulation.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000001036](https://www.ebi.ac.uk/biomodels/BIOMD0000001036)
Cappuccio2007 - Tumor-immune sCappuccio2007 - Tumor-immune system interactions and determination of the optimal therapeutic protocol in immunotherapy
|
pass[Cappuccio2007.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001036#Files)
|pass|
pass[Cappuccio2007 - Fig1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001036#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675434319fa297efdca1f477/download

Logs: https://api.biosimulations.org/logs/675434319fa297efdca1f477?includeOutput=true

View: https://api.biosimulations.org/runs/675434319fa297efdca1f477

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754342fc3054f763d5576f5/download

Logs: https://api.biosimulations.org/logs/6754342fc3054f763d5576f5?includeOutput=true

View: https://api.biosimulations.org/runs/6754342fc3054f763d5576f5

HTTP response: 201
| +|
[BIOMD0000001037](https://www.ebi.ac.uk/biomodels/BIOMD0000001037)
Alharbi2019 - Tumor-normal modAlharbi2019 - Tumor-normal model (TNM) of the development of tumor cells and their impact on normal cell dynamics
|
pass[Alharbi2019 TNM.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001037#Files)
|pass|
pass[Alharbi2019 TNM - Fig10.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001037#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67543445707aa641045f2e44/download

Logs: https://api.biosimulations.org/logs/67543445707aa641045f2e44?includeOutput=true

View: https://api.biosimulations.org/runs/67543445707aa641045f2e44

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675434429fa297efdca1f480/download

Logs: https://api.biosimulations.org/logs/675434429fa297efdca1f480?includeOutput=true

View: https://api.biosimulations.org/runs/675434429fa297efdca1f480

HTTP response: 201
| +|
[BIOMD0000001038](https://www.ebi.ac.uk/biomodels/BIOMD0000001038)
Alharbi2019 - Tumor-normal-vitAlharbi2019 - Tumor-normal-vitamins model (TNVM) of the effects of vitamins on delaying the growth of tumor cells
|
pass[Alharbi2019 TNVM.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001038#Files)
|pass|
pass[Alharbi2019 TNVM - Fig11.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001038#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67543459c3054f763d55772b/download

Logs: https://api.biosimulations.org/logs/67543459c3054f763d55772b?includeOutput=true

View: https://api.biosimulations.org/runs/67543459c3054f763d55772b

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67543457c3054f763d557728/download

Logs: https://api.biosimulations.org/logs/67543457c3054f763d557728?includeOutput=true

View: https://api.biosimulations.org/runs/67543457c3054f763d557728

HTTP response: 201
| +|
[BIOMD0000001039](https://www.ebi.ac.uk/biomodels/BIOMD0000001039)
Zake2021 - PBPK model of metfoZake2021 - PBPK model of metformin in mice: single dose intavenous
|
pass[Zake2021_Metformin_Mice_IV.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001039#Files)
|pass|
MultipleSEDMLs['Zake2021 - PBPK Metformin Mice IV single dose.sedml', 'Zake2021_Metformin_Mice_IV.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000001040](https://www.ebi.ac.uk/biomodels/BIOMD0000001040)
Kurlovics2021 - Metformin partKurlovics2021 - Metformin partitioning from plasma to RBC, single coefficient
|
pass[Kurlovics2021_single.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001040#Files)
|pass|
MultipleSEDMLs['Kurlovics2021_single.sedml', 'Single.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000001041](https://www.ebi.ac.uk/biomodels/BIOMD0000001041)
Kimmel2021 - T cell competitioKimmel2021 - T cell competition and stochastic extinction events in CAR T cell therapy
|
pass[Kimmel2021.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001041#Files)
|FAIL|
pass[Kimmel2021 - Fig2(a) and (b).sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001041#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67543471c3054f763d557743/download

Logs: https://api.biosimulations.org/logs/67543471c3054f763d557743?includeOutput=true

View: https://api.biosimulations.org/runs/67543471c3054f763d557743

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754346e9fa297efdca1f4a8/download

Logs: https://api.biosimulations.org/logs/6754346e9fa297efdca1f4a8?includeOutput=true

View: https://api.biosimulations.org/runs/6754346e9fa297efdca1f4a8

HTTP response: 201
| +|
[BIOMD0000001042](https://www.ebi.ac.uk/biomodels/BIOMD0000001042)
Makhlouf2020 - No treatment moMakhlouf2020 - No treatment model of the role of CD4 T cells in tumor-immune interactions
|
pass[Makhlouf2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001042#Files)
|FAIL|
MultipleSEDMLs['Makhlouf2020 - Fig1(a).sedml', 'Makhlouf2020 - Fig1(b).sedml', 'Makhlouf2020 - Fig1(c).sedml']
|NA|NA|NA|NA| +|
[BIOMD0000001043](https://www.ebi.ac.uk/biomodels/BIOMD0000001043)
Wodarz2001 - Viruses as antituWodarz2001 - Viruses as antitumor weapons
|
pass[Wodarz2001.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001043#Files)
|pass|
MultipleSEDMLs['Wodarz2001 - Fig3A more cytotoxic.sedml', 'Wodarz2001 - Fig3A non-cytotoxic.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000001044](https://www.ebi.ac.uk/biomodels/BIOMD0000001044)
Csikasz-Nagy2006 - Mammalian CCsikasz-Nagy2006 - Mammalian Cell Cycle model
|
pass[Csikasz-Nagy2006.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001044#Files)
|pass|
pass[Csikasz-Nagy2006.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001044#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754348e707aa641045f2e86/download

Logs: https://api.biosimulations.org/logs/6754348e707aa641045f2e86?includeOutput=true

View: https://api.biosimulations.org/runs/6754348e707aa641045f2e86

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754348bc3054f763d557753/download

Logs: https://api.biosimulations.org/logs/6754348bc3054f763d557753?includeOutput=true

View: https://api.biosimulations.org/runs/6754348bc3054f763d557753

HTTP response: 201
| +|
[BIOMD0000001046](https://www.ebi.ac.uk/biomodels/BIOMD0000001046)
Raman2005 - Mycolic acid pathwRaman2005 - Mycolic acid pathway of M. tuberculosis
|
pass[Raman2005_MAP.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001046#Files)
|pass|NoSEDML|NA|NA|NA|NA| +|
[BIOMD0000001047](https://www.ebi.ac.uk/biomodels/BIOMD0000001047)
Collier1996 - Delta Notch inteCollier1996 - Delta Notch intercellular signalling and lateral inhibition
|
pass[delta_notch.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001047#Files)
|pass|
pass[delta_notch.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001047#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675434e09fa297efdca1f4d5/download

Logs: https://api.biosimulations.org/logs/675434e09fa297efdca1f4d5?includeOutput=true

View: https://api.biosimulations.org/runs/675434e09fa297efdca1f4d5

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675434dd707aa641045f2eab/download

Logs: https://api.biosimulations.org/logs/675434dd707aa641045f2eab?includeOutput=true

View: https://api.biosimulations.org/runs/675434dd707aa641045f2eab

HTTP response: 201
| +|
[BIOMD0000001056](https://www.ebi.ac.uk/biomodels/BIOMD0000001056)
Chulian2021 - feedback signallChulian2021 - feedback signalling in B lymphopoeisis
|
pass[chulian2021.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001056#Files)
|pass|
pass[chulian2021.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001056#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675434f9c3054f763d557788/download

Logs: https://api.biosimulations.org/logs/675434f9c3054f763d557788?includeOutput=true

View: https://api.biosimulations.org/runs/675434f9c3054f763d557788

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675434f6c3054f763d557785/download

Logs: https://api.biosimulations.org/logs/675434f6c3054f763d557785?includeOutput=true

View: https://api.biosimulations.org/runs/675434f6c3054f763d557785

HTTP response: 201
| +|[BIOMD0000001057](https://www.ebi.ac.uk/biomodels/BIOMD0000001057)
Nikolov2020 - p53-miR34 model|
pass[Nikolov2020.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001057#Files)
|pass|
pass[Nikolov2020.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001057#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67543513707aa641045f2ed3/download

Logs: https://api.biosimulations.org/logs/67543513707aa641045f2ed3?includeOutput=true

View: https://api.biosimulations.org/runs/67543513707aa641045f2ed3

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67543511707aa641045f2ed0/download

Logs: https://api.biosimulations.org/logs/67543511707aa641045f2ed0?includeOutput=true

View: https://api.biosimulations.org/runs/67543511707aa641045f2ed0

HTTP response: 201
| +|
[BIOMD0000001058](https://www.ebi.ac.uk/biomodels/BIOMD0000001058)
Novak2022 - Mitotic kinase oscNovak2022 - Mitotic kinase oscillation
|
pass[Novak2022.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001058#Files)
|pass|
pass[Novak2022.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001058#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675435289fa297efdca1f505/download

Logs: https://api.biosimulations.org/logs/675435289fa297efdca1f505?includeOutput=true

View: https://api.biosimulations.org/runs/675435289fa297efdca1f505

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67543525707aa641045f2ef9/download

Logs: https://api.biosimulations.org/logs/67543525707aa641045f2ef9?includeOutput=true

View: https://api.biosimulations.org/runs/67543525707aa641045f2ef9

HTTP response: 201
| +|[BIOMD0000001059](https://www.ebi.ac.uk/biomodels/BIOMD0000001059)
Stucki2005 - caspase-3 metabolism|
pass[Stucki2005.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001059#Files)
|pass|
pass[Stucki2005.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001059#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/6754353f707aa641045f2f0d/download

Logs: https://api.biosimulations.org/logs/6754353f707aa641045f2f0d?includeOutput=true

View: https://api.biosimulations.org/runs/6754353f707aa641045f2f0d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/6754353cc3054f763d5577b9/download

Logs: https://api.biosimulations.org/logs/6754353cc3054f763d5577b9?includeOutput=true

View: https://api.biosimulations.org/runs/6754353cc3054f763d5577b9

HTTP response: 201
| +|[BIOMD0000001060](https://www.ebi.ac.uk/biomodels/BIOMD0000001060)
Frank2021 - Macrophage polarization|
pass[Frank2021.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001060#Files)
|pass|
pass[Frank2021.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001060#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/67543554c3054f763d5577cd/download

Logs: https://api.biosimulations.org/logs/67543554c3054f763d5577cd?includeOutput=true

View: https://api.biosimulations.org/runs/67543554c3054f763d5577cd

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675435519fa297efdca1f537/download

Logs: https://api.biosimulations.org/logs/675435519fa297efdca1f537?includeOutput=true

View: https://api.biosimulations.org/runs/675435519fa297efdca1f537

HTTP response: 201
| +|
[BIOMD0000001064](https://www.ebi.ac.uk/biomodels/BIOMD0000001064)
Kim2011 - the genome scale recKim2011 - the genome scale reconstruction of the Vibrio vulnificus metabolic network - VvuMBEL943
|
pass[Kim2011_VvuMBEL943.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001064#Files)
|pass|NoSEDML|NA|NA|NA|NA| +|
[BIOMD0000001065](https://www.ebi.ac.uk/biomodels/BIOMD0000001065)
vonDassow2000 - Segment PolarivonDassow2000 - Segment Polarity Network model on 1x4 grid of cells
|
FAIL[vonDassow2000_1x4.timecourse1.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001065#Files)
|FAIL|
FAIL[vonDassow2000_1x4.timecourse1.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001065#Files)
|pass|
SEDMLfile```failed to validate SEDML file vonDassow2000_1x4.timecourse1.sedml```
|
FAILDownload: https://api.biosimulations.org/results/6754356e707aa641045f2f39/download

Logs: https://api.biosimulations.org/logs/6754356e707aa641045f2f39?includeOutput=true

View: https://api.biosimulations.org/runs/6754356e707aa641045f2f39

HTTP response: 201

Error message: `/root/archive.omex` is not a valid COMBINE/OMEX archive. - The SED-ML file at location `./vonDassow2000_1x4.timecourse1.sedml` is invalid. - The value of a 'sedml:id' must conform to the syntax of the data type 'SId' Reference: L3V1 Sedml V1 Section The id on the is 'vonDassow2000_1x4.timecourse1', which does not conform to the syntax.

Exception type: ValueError
|
FAILDownload: https://api.biosimulations.org/results/6754356b9fa297efdca1f54f/download

Logs: https://api.biosimulations.org/logs/6754356b9fa297efdca1f54f?includeOutput=true

View: https://api.biosimulations.org/runs/6754356b9fa297efdca1f54f

HTTP response: 201

Error message: `/root/archive.omex` is not a valid COMBINE/OMEX archive. - The SED-ML file at location `./vonDassow2000_1x4.timecourse1.sedml` is invalid. - The value of a 'sedml:id' must conform to the syntax of the data type 'SId' Reference: L3V1 Sedml V1 Section The id on the is 'vonDassow2000_1x4.timecourse1', which does not conform to the syntax.

Exception type: ValueError
| +|
[BIOMD0000001066](https://www.ebi.ac.uk/biomodels/BIOMD0000001066)
Chowell2022 - Random Forest moChowell2022 - Random Forest model to predict efficacy of immune checkpoint blockade across multiple cancer patient cohorts
|
NonSBMLOpen Neural Network Exchange:[{'name': 'RF16.onnx', 'description': 'ONNX file of the Random Forest (RF16) trained model.\u2028', 'fileSize': '1889619', 'mimeType': 'application/octet-stream', 'md5sum': '1632ec5d372248c610b5e8cf5b857696', 'sha1sum': '50ab0b5c7fd611f520d98307c55adcb6149d22ba', 'sha256sum': 'bbe307c7ec2ec8c21c5fa7e99914e95883750eb57a2094f19f208a15195b800d'}]
|NA|NA|NA|NA|NA|NA| +|
[BIOMD0000001067](https://www.ebi.ac.uk/biomodels/BIOMD0000001067)
Deshpande2019 - Random Forest Deshpande2019 - Random Forest model to predict long non-coding RNAs from coding RNAs in Zea Mays plant transcriptomic data
|
NonSBMLOpen Neural Network Exchange:[{'name': 'zmays_trained_model.onnx', 'description': 'ONNX file for RandomForest trained model', 'fileSize': '35521903', 'mimeType': 'application/octet-stream', 'md5sum': '982179f2cba55da03ce87a3ecdc2f791', 'sha1sum': '06328fa1bb9e04f0ccd01a4bcf21b8969286e1de', 'sha256sum': 'd41d70aaef36b2b7ab33748418e90f62c27f7f90b26269b3167aea8628b983c9'}]
|NA|NA|NA|NA|NA|NA| +|
[BIOMD0000001068](https://www.ebi.ac.uk/biomodels/BIOMD0000001068)
Nassar2022 - Metagenomics ClasNassar2022 - Metagenomics Classification Task for Scientific Literature Text
|
NonSBMLOpen Neural Network Exchange:[{'name': 'doc2vec-model.onnx', 'description': 'This is the best performing model in ONNX format', 'fileSize': '865713', 'mimeType': 'application/octet-stream', 'md5sum': 'f4445063ececaa2b205953b24a9ea812', 'sha1sum': '79acbbbcfbe7db64178595f61647a833f4408db7', 'sha256sum': '49a6e8a84cd957a10f5840d7d2a4008849bfbb280b3200746a4bcc4a5d86ebcd'}]
|NA|NA|NA|NA|NA|NA| +|
[BIOMD0000001069](https://www.ebi.ac.uk/biomodels/BIOMD0000001069)
Alam2019 - Machine learning apAlam2019 - Machine learning approach of automatic identification and counting of blood cells
|
NonSBMLOpen Neural Network Exchange:[{'name': 'saved_model.onnx', 'description': 'Exported YoloV2 Model for Blood Cell Detection with 3 classes', 'fileSize': '63132297', 'mimeType': 'application/octet-stream', 'md5sum': 'c061a4fca182fe9bd6cf193bbbfb84cd', 'sha1sum': '5c133a7d5c9dbc6b0a62ad6aef41349384599d5b', 'sha256sum': '791ca6b7cd4c5f372ad8e641cc325ffd4d14f1d75f1de25bd982ef5d41bf4c25'}]
|NA|NA|NA|NA|NA|NA| +|
[BIOMD0000001070](https://www.ebi.ac.uk/biomodels/BIOMD0000001070)
Kong2022 - Conditional AntibodKong2022 - Conditional Antibody Design as 3D Equivariant Graph Translation
|
NonSBMLOther:[{'name': 'mean.Dockerfile', 'description': 'Dockerfile setting up the dependencies and running training/evaluation', 'fileSize': '799', 'mimeType': 'text/plain', 'md5sum': '23c24e7ac01a93168318d502aa10d755', 'sha1sum': '58ebc0d6d45121a22df62b713e02aba8c8467bd8', 'sha256sum': '5e6b93f6778dc6c185b02debdfe5334b71248a2ff14b0d12807a3d82fc870134'}]
|NA|NA|NA|NA|NA|NA| +|
[BIOMD0000001071](https://www.ebi.ac.uk/biomodels/BIOMD0000001071)
Wang2022 - Scaffolding proteinWang2022 - Scaffolding protein functional sites using deep learning
|
NonSBMLOther:[{'name': 'Dockerfile.txt', 'description': 'Dockerfile to build the image and run the model', 'fileSize': '2612', 'mimeType': 'text/plain', 'md5sum': '517acd5631b701de2296a0f8c0a39c99', 'sha1sum': '4a75e6bf40316f58dc212e86a45cfba17f6def94', 'sha256sum': 'af417f79d4c22c5e34446a102ac004a5ea40e3ed3ddf7ac6146bb89b1ae3371c'}]
|NA|NA|NA|NA|NA|NA| +|
[BIOMD0000001073](https://www.ebi.ac.uk/biomodels/BIOMD0000001073)
Patterson2022 - Tumour mutatioPatterson2022 - Tumour mutation data driven Random Forest model to predict immune checkpoint inhibitor therapy benefit in metastatic melanoma
|
NonSBMLOpen Neural Network Exchange:[{'name': 'rforest_ROLP.onnx', 'description': 'ONNX (Open Neural Network Exchange) file of the trained Random Forest model (rforest_ROLP).\u2028', 'fileSize': '80528', 'mimeType': 'application/octet-stream', 'md5sum': 'd0bcc61b9324eb3f668348a88b82b912', 'sha1sum': 'f3df610274a99a3872e86b56955ace86990f18ee', 'sha256sum': 'b2cb0d7d5e9c0498ad927b5da80bb2a443bc288fced6175e5ceb80c34f96a59a'}]
|NA|NA|NA|NA|NA|NA| +|
[BIOMD0000001074](https://www.ebi.ac.uk/biomodels/BIOMD0000001074)
Liu2023 - Predicting the efficLiu2023 - Predicting the efficacy of immune checkpoint inhibitors monotherapy in advanced non-small cell lung cancer: a machine learning method based on multidimensional data
|
NonSBMLOpen Neural Network Exchange:[{'name': 'rf_ici.onnx', 'description': 'Immune checkpoint inhibitors model with random forest', 'fileSize': '37866', 'mimeType': 'application/octet-stream', 'md5sum': '5b2376dbcee3545f66e542149b4995ee', 'sha1sum': 'c140f4b3d8c0c189d165d57efdf6c3045b3e97e8', 'sha256sum': '32b343f2d1028c9cb2f0fc8c12c30da90de26790f0fdc5b579b53e52f0adfaea'}]
|NA|NA|NA|NA|NA|NA| +|
[BIOMD0000001075](https://www.ebi.ac.uk/biomodels/BIOMD0000001075)
Sammut2022 - Multi-omic machinSammut2022 - Multi-omic machine learning model to predict pathological complete response for breast cancer neoadjuvant therapy
|
NonSBMLOther:[{'name': 'reproduced_trained_models.zip', 'description': 'A subset of trained models which is later used in the validation process.', 'fileSize': '87786133', 'mimeType': 'application/zip', 'md5sum': '81e98cac9882741e9dcbaf75a021a565', 'sha1sum': '6b8925f958c3ccf67a9606e4c5e03d48da9aadee', 'sha256sum': '5b4e1ae5ebc715ebe2e32fc9e7105773985e3b91ce2ce69958d61debb423b2f5'}]
|NA|NA|NA|NA|NA|NA| +|
[BIOMD0000001077](https://www.ebi.ac.uk/biomodels/BIOMD0000001077)
Adlung2021 - Cell-to-cell variAdlung2021 - Cell-to-cell variability in JAK2/STAT5 pathway
|
pass[Adlung2021 _model_jakstat_pa.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001077#Files)
|pass|
pass[Adlung2021 _model_jakstat_pa.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001077#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675435949fa297efdca1f56d/download

Logs: https://api.biosimulations.org/logs/675435949fa297efdca1f56d?includeOutput=true

View: https://api.biosimulations.org/runs/675435949fa297efdca1f56d

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/67543592707aa641045f2f53/download

Logs: https://api.biosimulations.org/logs/67543592707aa641045f2f53?includeOutput=true

View: https://api.biosimulations.org/runs/67543592707aa641045f2f53

HTTP response: 201
| +|[BIOMD0000001078](https://www.ebi.ac.uk/biomodels/BIOMD0000001078)
Hammaren-Geissen2022_PPToP_Model12|
pass[Hammaren-Geissen2022_PPToP_Model12_withParameterSets.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001078#Files)
|pass|
MultipleSEDMLs['Hammaren-Geissen2022_PPToP_Model12_withParameterSets.sedml', 'PPToP_Model12.sedml']
|NA|NA|NA|NA| +|
[BIOMD0000001079](https://www.ebi.ac.uk/biomodels/BIOMD0000001079)
DeBoeck2021 - Modular approachDeBoeck2021 - Modular approach to modeling the cell cycle, simple cell cycle model
|
pass[DeBoeck2021_cellcycle_bistableapc.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001079#Files)
|pass|
pass[DeBoeck2021_cellcycle_bistableapc.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001079#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675435ad9fa297efdca1f57e/download

Logs: https://api.biosimulations.org/logs/675435ad9fa297efdca1f57e?includeOutput=true

View: https://api.biosimulations.org/runs/675435ad9fa297efdca1f57e

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675435abc3054f763d5577fb/download

Logs: https://api.biosimulations.org/logs/675435abc3054f763d5577fb?includeOutput=true

View: https://api.biosimulations.org/runs/675435abc3054f763d5577fb

HTTP response: 201
| +|
[BIOMD0000001080](https://www.ebi.ac.uk/biomodels/BIOMD0000001080)
DeBoeck2021 - Modular approachDeBoeck2021 - Modular approach to modeling the cell cycle, 5 ODE model with 3 bistable switches
|
pass[DeBoeck2021_cellcycle_threeswitches.xml](https://www.ebi.ac.uk/biomodels/BIOMD0000001080#Files)
|pass|
pass[DeBoeck2021_cellcycle_threeswitches.sedml](https://www.ebi.ac.uk/biomodels/BIOMD0000001080#Files)
|pass|
other```'bool' object has no attribute 'isdigit'```
|
passDownload: https://api.biosimulations.org/results/675435c4c3054f763d557816/download

Logs: https://api.biosimulations.org/logs/675435c4c3054f763d557816?includeOutput=true

View: https://api.biosimulations.org/runs/675435c4c3054f763d557816

HTTP response: 201
|
passDownload: https://api.biosimulations.org/results/675435c19fa297efdca1f598/download

Logs: https://api.biosimulations.org/logs/675435c19fa297efdca1f598?includeOutput=true

View: https://api.biosimulations.org/runs/675435c19fa297efdca1f598

HTTP response: 201
| diff --git a/BioModels/parse_biomodels.py b/BioModels/parse_biomodels.py index d5b0a6dd..50244c52 100755 --- a/BioModels/parse_biomodels.py +++ b/BioModels/parse_biomodels.py @@ -20,10 +20,12 @@ import urllib import sys import matplotlib +import pickle sys.path.append("..") import utils +matplotlib.use('agg') #prevent matplotlib from trying to open a window API_URL: str = "https://www.ebi.ac.uk/biomodels" out_format="json" @@ -185,8 +187,8 @@ def main(): #accumulate results in columns defined by keys which correspond to the local variable names to be used below #to allow automated loading into the columns - column_labels = "Model |valid-sbml|valid-sbml-units|valid-sedml|broken-ref|tellurium" - column_keys = "model_desc|valid_sbml|valid_sbml_units|valid_sedml|broken_ref|tellurium_outcome" + column_labels = "Model |valid-sbml|valid-sbml-units|valid-sedml|broken-ref|tellurium|tellurium-remote|copasi-remote" + column_keys = "model_desc|valid_sbml|valid_sbml_units|valid_sedml|broken_ref|tellurium_outcome|tellurium_remote_outcome|copasi_remote_outcome" mtab = utils.MarkdownTable(column_labels,column_keys) #allow stdout/stderr from validation tests to be suppressed to improve progress count visibility @@ -196,8 +198,18 @@ def main(): model_ids = cache.do_request(f"{API_URL}/model/identifiers?format={out_format}").json()['models'] count = 0 starting_dir = os.getcwd() - + for model_id in model_ids: + + pickle_name = f"{model_id}_mtab.p" + pickle_path = os.path.join(starting_dir,tmp_dir,model_id,pickle_name) + if os.path.exists(pickle_path) and use_pickles: + print(f"\r{model_id} {count}/{len(model_ids)} ",end='') + print(f"loading {pickle_path}...") + mtab_dict = pickle.load(open(pickle_path, "rb")) + mtab.new_row() + mtab = mtab_dict['mtab_row'] + continue #allow testing on a small sample of models if max_count > 0 and count >= max_count: break count += 1 @@ -241,9 +253,40 @@ def main(): mtab['tellurium_outcome'] = utils.test_engine("tellurium",sedml_file) sup.restore() + + engine_keys = ["copasi","tellurium"] + test_folder = 'tests' + d1_plots_remote_dir = os.path.join(test_folder, 'd1_plots_remote') + results_remote = utils.run_biosimulators_remotely(engine_keys, + sedml_file_name=sedml_file, + sbml_file_name=sbml_file, + d1_plots_remote_dir=d1_plots_remote_dir, + test_folder=test_folder) + + + for e in engine_keys: + # only if log_yml key is present + if "log_yml" in results_remote[e]: + results_remote_processed = utils.process_log_yml_dict(results_remote[e]["log_yml"]) + else: + results_remote_processed = {"status": "ERROR", "error_message": "log_yml key not found", "exception_type": "KeyError"} + mtab_remote_outcome_key = f'{e}_remote_outcome' + + info_submission = f"Download: {results_remote[e]['download']}

Logs: {results_remote[e]['logs']}

View: {results_remote[e]['view']}

HTTP response: {str(results_remote[e]['response'])}" + error_message_string = f'Error message: {results_remote_processed["error_message"]}

Exception type: {results_remote_processed["exception_type"]}' + + if results_remote_processed["error_message"] != "": + info_submission = info_submission + f'

{error_message_string}' + + mtab[mtab_remote_outcome_key] = [results_remote_processed['status'], info_submission] + #stop matplotlib plots from building up matplotlib.pyplot.close() + mtab_dict = {'mtab_row': mtab,'results_remote': results_remote} + pickle.dump(mtab_dict, open(pickle_name, "wb")) + + print() #end progress counter, go to next line of stdout #show total cases processed @@ -251,7 +294,7 @@ def main(): #count occurrences of each cell value, convert to final form for key in ['valid_sbml','valid_sbml_units','valid_sedml','broken_ref', - 'tellurium_outcome']: + 'tellurium_outcome','tellurium_remote_outcome', 'copasi_remote_outcome']: mtab.simple_summary(key) mtab.transform_column(key) @@ -261,9 +304,11 @@ def main(): #write out to file os.chdir(starting_dir) - with open('README.md', "w") as fout: + with open('README.md', "w", encoding="utf-8") as fout: fout.write(md_description) mtab.write(fout) if __name__ == "__main__": + use_pickles = True + # model_id_n = 443 main() \ No newline at end of file diff --git a/utils/__init__.py b/utils/__init__.py index b4242165..3cd65c07 100644 --- a/utils/__init__.py +++ b/utils/__init__.py @@ -330,10 +330,11 @@ def xmlns_fbc_attribute_missing(sbml_filepath,sedml_filepath): ''' True if the xmlns:fbc attribute is missing from the main sedml tag of the SED-ML file but present in the SBML file ''' - with open(sbml_filepath, 'r') as file: + + with open(sbml_filepath, 'r', encoding='utf-8') as file: sbmlstr = file.read() - with open(sedml_filepath, 'r') as file: + with open(sedml_filepath, 'r', encoding='utf-8') as file: sedstr = file.read() sbmlstr_fbc = re.search(r'xmlns:fbc="([^"]*)"', sbmlstr) @@ -637,10 +638,15 @@ def run_biosimulators_remote(engine,sedml_filepath,sbml_filepath): "email": "", } - results_urls = biosimulations.submit_simulation_archive(\ - archive_file=omex_file_name,\ - sim_dict=sim_dict) - + try: + results_urls = biosimulations.submit_simulation_archive(\ + archive_file=omex_file_name,\ + sim_dict=sim_dict) + results_urls['response'] = results_urls['response'].status_code + except Exception as exception_message: + print(f"There was an error submitting the simulation archive:{exception_message}") + results_urls = {"response":"","view": "", "download": "", "logs": "","exception": exception_message} + if os.path.exists(omex_filepath): os.remove(omex_filepath) @@ -1290,14 +1296,13 @@ def run_biosimulators_remotely(engine_keys, results_remote = dict() for e in engines.keys(): results_remote[e] = run_biosimulators_remote(e, sedml_file_name, sbml_file_name) - results_remote[e]['response'] = results_remote[e]['response'].status_code extract_dir_dict = dict() for e, link in results_remote.items(): try: extract_dir = get_remote_results(e, link["download"], remote_output_dir) - except HTTPError as emessage: - results_remote[e] = ["FAIL", str(emessage), type(emessage).__name__] + except Exception as emessage: + print(f'Error downloading {e} results: {emessage}') continue extract_dir_dict[e] = extract_dir From 28bc0a399e64b5d588fc004c9e32c5afbf067a51 Mon Sep 17 00:00:00 2001 From: Stella <30465823+stellaprins@users.noreply.github.com> Date: Thu, 12 Dec 2024 10:35:55 +0000 Subject: [PATCH 2/9] remove remove omex file (#104) --- utils/__init__.py | 9 --------- 1 file changed, 9 deletions(-) diff --git a/utils/__init__.py b/utils/__init__.py index 3cd65c07..d99278a9 100644 --- a/utils/__init__.py +++ b/utils/__init__.py @@ -647,9 +647,6 @@ def run_biosimulators_remote(engine,sedml_filepath,sbml_filepath): print(f"There was an error submitting the simulation archive:{exception_message}") results_urls = {"response":"","view": "", "download": "", "logs": "","exception": exception_message} - if os.path.exists(omex_filepath): - os.remove(omex_filepath) - return results_urls def get_remote_results(engine, download_link, output_dir='remote_results'): @@ -711,9 +708,6 @@ def run_biosimulators_docker(engine,sedml_filepath,sbml_filepath,output_dir='out detailed_error_log_dict['status'] = 'FAIL' detailed_error_log_dict['error_message'] = "Runtime Exception" - if os.path.exists(omex_filepath): - os.remove(omex_filepath) - return {"exception_message":exception_message,"log_yml":log_yml_dict, "detailed_error_log":detailed_error_log_dict} def biosimulators_core(engine,omex_filepath,output_dir=None): @@ -749,9 +743,6 @@ def biosimulators_core(engine,omex_filepath,output_dir=None): mounts=[mount_in,mount_out], command=f"-i '/root/in/{omex_file}' -o /root/out", auto_remove=True) - - if os.path.exists(omex_filepath_no_spaces): - os.remove(omex_filepath_no_spaces) def test_engine(engine,filename,error_categories=error_categories): ''' From 1838933f2a57355d7f397d78c4b987e925e6f331 Mon Sep 17 00:00:00 2001 From: Stella <30465823+stellaprins@users.noreply.github.com> Date: Mon, 16 Dec 2024 15:10:22 +0000 Subject: [PATCH 3/9] update d1 plots for biomodels tables (#99) * update d1 plots for biomodels tables * update results using original SED-ML files --- .../BIOMD0000000001/BIOMD0000000001_url.sedml | 26 +- .../amici_autogen_plot_for_task1.pdf | Bin 11104 -> 11104 bytes .../copasi_autogen_plot_for_task1.pdf | Bin 11133 -> 11133 bytes .../pysces_autogen_plot_for_task1.pdf | Bin 11174 -> 11174 bytes .../tellurium_autogen_plot_for_task1.pdf | Bin 11134 -> 11134 bytes .../vcell_autogen_plot_for_task1.pdf | Bin 15029 -> 15029 bytes .../amici_autogen_plot_for_task1.pdf | Bin 11110 -> 11110 bytes .../copasi_autogen_plot_for_task1.pdf | Bin 11139 -> 11139 bytes .../masspy_autogen_plot_for_task1.pdf | Bin 5954 -> 5954 bytes .../pysces_autogen_plot_for_task1.pdf | Bin 11180 -> 11180 bytes .../tellurium_autogen_plot_for_task1.pdf | Bin 11113 -> 11113 bytes .../vcell_autogen_plot_for_task1.pdf | Bin 11381 -> 11381 bytes .../results_compatibility_biosimulators.md | 42 +- .../BIOMD0000000001/tests/results_local.json | 114 +- .../BIOMD0000000001/tests/results_remote.json | 212 +- .../BIOMD0000000138/BIOMD0000000138_url.sedml | 16 +- .../amici_autogen_plot_for_task1.pdf | Bin 0 -> 5948 bytes .../copasi_autogen_plot_for_task1.pdf | Bin 0 -> 8709 bytes .../pysces_autogen_plot_for_task1.pdf | Bin 0 -> 5948 bytes .../tellurium_autogen_plot_for_task1.pdf | Bin 0 -> 8708 bytes .../vcell_autogen_plot_for_task1.pdf | Bin 0 -> 12268 bytes .../amici_autogen_plot_for_task1.pdf | Bin 0 -> 5954 bytes .../copasi_autogen_plot_for_task1.pdf | Bin 0 -> 8715 bytes .../masspy_autogen_plot_for_task1.pdf | Bin 0 -> 5954 bytes .../pysces_autogen_plot_for_task1.pdf | Bin 0 -> 5954 bytes .../tellurium_autogen_plot_for_task1.pdf | Bin 0 -> 8714 bytes .../vcell_autogen_plot_for_task1.pdf | Bin 0 -> 8937 bytes .../results_compatibility_biosimulators.md | 46 +- .../BIOMD0000000138/tests/results_local.json | 1237 ++++++++++-- .../BIOMD0000000138/tests/results_remote.json | 1715 ++++++++++++++--- .../d1_plots_local/amici_plot_10_task2.pdf | Bin 5948 -> 5948 bytes .../d1_plots_local/amici_plot_6_task2.pdf | Bin 5948 -> 5948 bytes .../d1_plots_local/amici_plot_7_task2.pdf | Bin 5948 -> 5948 bytes .../d1_plots_local/amici_plot_8_task2.pdf | Bin 5948 -> 5948 bytes .../d1_plots_local/amici_plot_9_task2.pdf | Bin 5948 -> 5948 bytes .../d1_plots_local/copasi_plot_10_task2.pdf | Bin 10320 -> 10320 bytes .../d1_plots_local/copasi_plot_6_task2.pdf | Bin 13690 -> 13690 bytes .../d1_plots_local/copasi_plot_7_task2.pdf | Bin 13661 -> 13661 bytes .../d1_plots_local/copasi_plot_8_task2.pdf | Bin 15540 -> 15540 bytes .../d1_plots_local/copasi_plot_9_task2.pdf | Bin 10204 -> 10204 bytes .../d1_plots_local/pysces_plot_10_task2.pdf | Bin 10312 -> 10312 bytes .../d1_plots_local/pysces_plot_6_task2.pdf | Bin 13684 -> 13684 bytes .../d1_plots_local/pysces_plot_7_task2.pdf | Bin 13677 -> 13677 bytes .../d1_plots_local/pysces_plot_8_task2.pdf | Bin 15525 -> 15525 bytes .../d1_plots_local/pysces_plot_9_task2.pdf | Bin 10210 -> 10210 bytes .../tellurium_plot_10_task2.pdf | Bin 9563 -> 9563 bytes 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.../d1_plots_remote/vcell_plot_10_task2.pdf | Bin 9677 -> 9677 bytes .../d1_plots_remote/vcell_plot_6_task2.pdf | Bin 13056 -> 13056 bytes .../d1_plots_remote/vcell_plot_7_task2.pdf | Bin 13135 -> 13135 bytes .../d1_plots_remote/vcell_plot_8_task2.pdf | Bin 14647 -> 14647 bytes .../d1_plots_remote/vcell_plot_9_task2.pdf | Bin 9658 -> 9658 bytes .../results_compatibility_biosimulators.md | 42 +- .../BIOMD0000000724/tests/results_local.json | 148 +- .../BIOMD0000000724/tests/results_remote.json | 258 +-- .../Adlung2021__model_jakstat_pa.omex | Bin 0 -> 9542 bytes .../d1_plots_local/amici_plot_2_task2.pdf | Bin 5948 -> 5948 bytes .../d1_plots_local/copasi_plot_2_task2.pdf | Bin 12792 -> 12792 bytes .../d1_plots_local/pysces_plot_2_task2.pdf | Bin 12797 -> 12797 bytes .../d1_plots_local/tellurium_plot_2_task2.pdf | Bin 12796 -> 12796 bytes .../d1_plots_remote/amici_plot_2_task2.pdf | Bin 5954 -> 5954 bytes .../d1_plots_remote/copasi_plot_2_task2.pdf | Bin 12798 -> 12798 bytes .../d1_plots_remote/masspy_plot_2_task2.pdf | Bin 5954 -> 5954 bytes .../d1_plots_remote/pysces_plot_2_task2.pdf | Bin 12803 -> 12803 bytes .../tellurium_plot_2_task2.pdf | Bin 12822 -> 12822 bytes .../d1_plots_remote/vcell_plot_2_task2.pdf | Bin 12762 -> 12762 bytes .../results_compatibility_biosimulators.md | 42 +- .../BIOMD0000001077/tests/results_local.json | 116 +- .../BIOMD0000001077/tests/results_remote.json | 218 +-- ...t_biomodels_compatibility_biosimulators.py | 2 +- 98 files changed, 3162 insertions(+), 1072 deletions(-) create mode 100644 BioModels/BIOMD0000000138/tests/d1_plots_local/amici_autogen_plot_for_task1.pdf create mode 100644 BioModels/BIOMD0000000138/tests/d1_plots_local/copasi_autogen_plot_for_task1.pdf create mode 100644 BioModels/BIOMD0000000138/tests/d1_plots_local/pysces_autogen_plot_for_task1.pdf create mode 100644 BioModels/BIOMD0000000138/tests/d1_plots_local/tellurium_autogen_plot_for_task1.pdf create mode 100644 BioModels/BIOMD0000000138/tests/d1_plots_local/vcell_autogen_plot_for_task1.pdf create mode 100644 BioModels/BIOMD0000000138/tests/d1_plots_remote/amici_autogen_plot_for_task1.pdf create mode 100644 BioModels/BIOMD0000000138/tests/d1_plots_remote/copasi_autogen_plot_for_task1.pdf create mode 100644 BioModels/BIOMD0000000138/tests/d1_plots_remote/masspy_autogen_plot_for_task1.pdf create mode 100644 BioModels/BIOMD0000000138/tests/d1_plots_remote/pysces_autogen_plot_for_task1.pdf create mode 100644 BioModels/BIOMD0000000138/tests/d1_plots_remote/tellurium_autogen_plot_for_task1.pdf create mode 100644 BioModels/BIOMD0000000138/tests/d1_plots_remote/vcell_autogen_plot_for_task1.pdf create mode 100644 BioModels/BIOMD0000001077/Adlung2021__model_jakstat_pa.omex diff --git a/BioModels/BIOMD0000000001/BIOMD0000000001_url.sedml b/BioModels/BIOMD0000000001/BIOMD0000000001_url.sedml index bb4d00ef..03dd1b45 100644 --- a/BioModels/BIOMD0000000001/BIOMD0000000001_url.sedml +++ b/BioModels/BIOMD0000000001/BIOMD0000000001_url.sedml @@ -4,7 +4,7 @@ - + @@ -616,18 +616,18 @@ - - - - - - - - - - - - + + + + + + + + + + + + diff --git a/BioModels/BIOMD0000000001/tests/d1_plots_local/amici_autogen_plot_for_task1.pdf b/BioModels/BIOMD0000000001/tests/d1_plots_local/amici_autogen_plot_for_task1.pdf index 58e8eda7141eb826c996c88c1b540b1f5240c754..48d9399d780b73d896081802dbc1d238bbdc42f9 100644 GIT binary patch delta 21 ccmaD5_8@Envj&Hup`o#OV delta 21 ccmaD5_8@Envj&HOk)esPk*V2cZjDf808&l{B>(^b diff --git a/BioModels/BIOMD0000000001/tests/d1_plots_local/copasi_autogen_plot_for_task1.pdf b/BioModels/BIOMD0000000001/tests/d1_plots_local/copasi_autogen_plot_for_task1.pdf index a6c0d151ccc96a0c062bd13a5aeaecac14e0ca5a..a12a44b91b6a3fe3532c67d2be871854845e0b32 100644 GIT binary patch delta 21 ccmewx_BU*Uf(D17p`o#nE(I) diff --git a/BioModels/BIOMD0000000001/tests/d1_plots_local/vcell_autogen_plot_for_task1.pdf b/BioModels/BIOMD0000000001/tests/d1_plots_local/vcell_autogen_plot_for_task1.pdf index c31075b1ad66772d743816543c71025b502e49c8..a355afd7c9b63a8ac2314d14ddf7f025ea76472f 100644 GIT binary patch delta 21 ccmdm5y0vsejTwibp`o#Z?H2?qr delta 21 ccmaDB_AG1zvj&HOk%6VLp|QngZjESW08?iMIsgCw diff --git a/BioModels/BIOMD0000000001/tests/d1_plots_remote/copasi_autogen_plot_for_task1.pdf b/BioModels/BIOMD0000000001/tests/d1_plots_remote/copasi_autogen_plot_for_task1.pdf index 969aa979aa13e36ef2582dd84ed7434938f1735d..20882ea6c3045ed9c029bb87625c87e5ac66d610 100644 GIT binary patch delta 21 ccmZn;Zw}v}puu5iXkcMtX==V%LnE3Q07jt&xc~qF delta 21 ccmZn;Zw}v}puu5aWMFA*Xk@rqLnE3Q07fVUr~m)} diff --git a/BioModels/BIOMD0000000001/tests/d1_plots_remote/masspy_autogen_plot_for_task1.pdf b/BioModels/BIOMD0000000001/tests/d1_plots_remote/masspy_autogen_plot_for_task1.pdf index 5f97467a54cb8d58eacd90973d516de6be3b2dda..11d7378c7aa4de8b8eddfff8cbf04565c2d5fb3d 100644 GIT binary patch delta 21 ccmX@4cSvu;9uW>hLjwy_0|SfAM?~tF096zR3jhEB delta 21 ccmX@4cSvu;9uW=$BLhogLlc9|M?~tF095}62LJ#7 diff --git a/BioModels/BIOMD0000000001/tests/d1_plots_remote/pysces_autogen_plot_for_task1.pdf b/BioModels/BIOMD0000000001/tests/d1_plots_remote/pysces_autogen_plot_for_task1.pdf index eb9e956b478e2a8d8bd956ee10d3371ff9f06e4d..1659ee1b2293cd41aa2073cbcba1f3c2b27a907f 100644 GIT binary patch delta 20 bcmZ1zz9xKwrv|&Bp@D^|f#K!=jTmMCN%;mD delta 20 bcmZ1zz9xKwrv|%$k%6VLq4DMbjTmMCN(2TQ diff --git a/BioModels/BIOMD0000000001/tests/d1_plots_remote/tellurium_autogen_plot_for_task1.pdf b/BioModels/BIOMD0000000001/tests/d1_plots_remote/tellurium_autogen_plot_for_task1.pdf index fe9685aa0665c1718bf2d850d5ab22798e1195a4..5c6a8a905b2b70367a9fdc96a179fe0438224824 100644 GIT binary patch delta 21 ccmaDE_A+b(n+AuWp@D^|fsx^6K8JxzCJ09b+shyVZp diff --git a/BioModels/BIOMD0000000001/tests/results_compatibility_biosimulators.md b/BioModels/BIOMD0000000001/tests/results_compatibility_biosimulators.md index bd58a772..304796b9 100644 --- a/BioModels/BIOMD0000000001/tests/results_compatibility_biosimulators.md +++ b/BioModels/BIOMD0000000001/tests/results_compatibility_biosimulators.md @@ -1,23 +1,23 @@ | Engine | Compatibility | pass / FAIL (R) | pass / FAIL (L) | d1 (R) | d1 (L) | |:-------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:------------------------------------------------------------------------|:-----------------------------------------------------------------------| -|
AMICIhttps://docs.biosimulators.org/Biosimulators_AMICI/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with AMICI.

SED-ML and SBML are compatible with AMICI.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | -|
BioNetGenhttps://docs.biosimulators.org/Biosimulators_BioNetGen/
|
⚠ XFAILEXPECTED FAIL

Only BNGL, SED-ML are compatible with BioNetGen.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
BoolNethttps://docs.biosimulators.org/Biosimulators_BoolNet/
|
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with BoolNet.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
Brian 2https://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with Brian 2.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
CBMPyhttps://docs.biosimulators.org/Biosimulators_CBMPy/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with CBMPy.

SED-ML and SBML are compatible with CBMPy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
COBRApyhttps://docs.biosimulators.org/Biosimulators_COBRApy/
Only allows steady state simulations
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COBRApy.

SED-ML and SBML are compatible with COBRApy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
COPASIhttps://docs.biosimulators.org/Biosimulators_COPASI/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COPASI.

SED-ML and SBML are compatible with COPASI.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | -|
GillesPy2https://docs.biosimulators.org/Biosimulators_GillesPy2/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with GillesPy2.

SED-ML and SBML are compatible with GillesPy2.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
GINsimhttps://docs.biosimulators.org/Biosimulators_GINsim/
|
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with GINsim.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
LibSBMLSimhttps://docs.biosimulators.org/Biosimulators_LibSBMLSim/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with LibSBMLSim.

SED-ML and SBML are compatible with LibSBMLSim.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
MASSpyhttps://docs.biosimulators.org/Biosimulators_MASSpy/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with MASSpy.

SED-ML and SBML are compatible with MASSpy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Could not load MassModel 'BIOMD0000000001'

ERROR TYPE:
CombineArchiveExecutionError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| plot | | -|
NetPyNEhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NetPyNE.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
NEURONhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NEURON.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
OpenCORhttps://docs.biosimulators.org/Biosimulators_OpenCOR/
|
⚠ XFAILEXPECTED FAIL

Only CellML, SED-ML are compatible with OpenCOR.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
pyNeuroMLhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with pyNeuroML.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
PySCeShttps://docs.biosimulators.org/Biosimulators_PySCeS/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with PySCeS.

SED-ML and SBML are compatible with PySCeS.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | -|
RBApyhttps://docs.biosimulators.org/Biosimulators_RBApy/
|
⚠ XFAILEXPECTED FAIL

Only RBApy, SED-ML are compatible with RBApy.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
Smoldynhttps://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api
|
⚠ XFAILEXPECTED FAIL

Only Smoldyn, SED-ML are compatible with Smoldyn.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
Error unknown. The log.yml containing error information was not found.

| | | -|
Telluriumhttps://docs.biosimulators.org/Biosimulators_tellurium/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with Tellurium.

SED-ML and SBML are compatible with Tellurium.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | -|
VCellhttps://github.com/virtualcell/vcell
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with VCell.

BNGL, SED-ML and SBML are compatible with VCell.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | -|
XPPhttps://docs.biosimulators.org/Biosimulators_XPP/
|
⚠ XFAILEXPECTED FAIL

Only XPP, SED-ML are compatible with XPP.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | \ No newline at end of file +|
AMICIhttps://docs.biosimulators.org/Biosimulators_AMICI/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with AMICI.

SBML and SED-ML are compatible with AMICI.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | +|
BioNetGenhttps://docs.biosimulators.org/Biosimulators_BioNetGen/
|
⚠ XFAILEXPECTED FAIL

Only BNGL, SED-ML are compatible with BioNetGen.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
BoolNethttps://docs.biosimulators.org/Biosimulators_BoolNet/
|
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with BoolNet.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
Brian 2https://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with Brian 2.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
CBMPyhttps://docs.biosimulators.org/Biosimulators_CBMPy/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with CBMPy.

SBML and SED-ML are compatible with CBMPy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
COBRApyhttps://docs.biosimulators.org/Biosimulators_COBRApy/
Only allows steady state simulations
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COBRApy.

SBML and SED-ML are compatible with COBRApy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
COPASIhttps://docs.biosimulators.org/Biosimulators_COPASI/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COPASI.

SBML and SED-ML are compatible with COPASI.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | +|
GillesPy2https://docs.biosimulators.org/Biosimulators_GillesPy2/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with GillesPy2.

SBML and SED-ML are compatible with GillesPy2.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
GINsimhttps://docs.biosimulators.org/Biosimulators_GINsim/
|
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with GINsim.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
LibSBMLSimhttps://docs.biosimulators.org/Biosimulators_LibSBMLSim/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with LibSBMLSim.

SBML and SED-ML are compatible with LibSBMLSim.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
MASSpyhttps://docs.biosimulators.org/Biosimulators_MASSpy/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with MASSpy.

SBML and SED-ML are compatible with MASSpy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Could not load MassModel 'BIOMD0000000001'

ERROR TYPE:
CombineArchiveExecutionError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| plot | | +|
NetPyNEhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NetPyNE.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
NEURONhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NEURON.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
OpenCORhttps://docs.biosimulators.org/Biosimulators_OpenCOR/
|
⚠ XFAILEXPECTED FAIL

Only CellML, SED-ML are compatible with OpenCOR.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
pyNeuroMLhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with pyNeuroML.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
PySCeShttps://docs.biosimulators.org/Biosimulators_PySCeS/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with PySCeS.

SBML and SED-ML are compatible with PySCeS.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | +|
RBApyhttps://docs.biosimulators.org/Biosimulators_RBApy/
|
⚠ XFAILEXPECTED FAIL

Only RBApy, SED-ML are compatible with RBApy.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
Smoldynhttps://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api
|
⚠ XFAILEXPECTED FAIL

Only Smoldyn, SED-ML are compatible with Smoldyn.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
Error unknown. The log.yml containing error information was not found.

| | | +|
Telluriumhttps://docs.biosimulators.org/Biosimulators_tellurium/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with Tellurium.

SBML and SED-ML are compatible with Tellurium.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | +|
VCellhttps://github.com/virtualcell/vcell
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with VCell.

SBML, SED-ML and BNGL are compatible with VCell.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | +|
XPPhttps://docs.biosimulators.org/Biosimulators_XPP/
|
⚠ XFAILEXPECTED FAIL

Only XPP, SED-ML are compatible with XPP.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | \ No newline at end of file diff --git a/BioModels/BIOMD0000000001/tests/results_local.json b/BioModels/BIOMD0000000001/tests/results_local.json index 497dc6e0..6d3fc9cb 100644 --- a/BioModels/BIOMD0000000001/tests/results_local.json +++ b/BioModels/BIOMD0000000001/tests/results_local.json @@ -2,12 +2,12 @@ "amici": { "exception_message": "", "log_yml": { - "duration": 19.08304, + "duration": 18.20733, "exception": null, "output": "", "sedDocuments": [ { - "duration": 18.56752, + "duration": 17.799615, "exception": null, "location": "BIOMD0000000001_url.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", @@ -279,7 +279,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.274286, + "duration": 0.307685, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -337,7 +337,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.521209, + "duration": 0.385686, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -350,7 +350,7 @@ "tasks": [ { "algorithm": "KISAO_0000496", - "duration": 17.605662, + "duration": 16.938878, "exception": null, "id": "task1", "output": "", @@ -382,12 +382,12 @@ "brian2": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/brian2' returned non-zero exit status 1", "log_yml": { - "duration": 0.072886, + "duration": 0.043407, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "WARNING /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpa3e54sxx/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n [py.warnings]\r\npyNeuroML >>> WARNING - /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpa3e54sxx/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n\r\n", + "output": "WARNING /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp_fz72ych/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n [py.warnings]\r\npyNeuroML >>> WARNING - /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp_fz72ych/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -397,12 +397,12 @@ "bionetgen": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/bionetgen' returned non-zero exit status 1", "log_yml": { - "duration": 0.185835, + "duration": 0.134905, "exception": { "message": "`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpkjoig1rs/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp206cqzzw/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -412,12 +412,12 @@ "boolnet": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/boolnet' returned non-zero exit status 1", "log_yml": { - "duration": 0.216644, + "duration": 0.182631, "exception": { "message": "`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpc9mkmrb6/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` may be invalid.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmphfkbf5he/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` may be invalid.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -427,12 +427,12 @@ "cbmpy": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/cbmpy' returned non-zero exit status 1", "log_yml": { - "duration": 0.301019, + "duration": 0.223897, "exception": { "message": "`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "\r\nINFO: No xlwt module available, Excel spreadsheet creation disabled\r\n\r\n\r\n\r\nNo module named 'cplex'\r\n\r\n\r\n\r\nCPLEX not available\r\n\r\n*****\r\nUsing GLPK\r\n*****\r\n\r\n\r\nINFO: No xlrd module available, Excel spreadsheet reading disabled\r\n\r\nCBMPy environment\r\n******************\r\nRevision: r689\r\n\r\n\r\n***********************************************************************\r\n* Welcome to CBMPy (0.7.25) - PySCeS Constraint Based Modelling *\r\n* http://cbmpy.sourceforge.net *\r\n* Copyright(C) Brett G. Olivier 2014 - 2019 *\r\n* Dept. of Systems Bioinformatics *\r\n* Vrije Universiteit Amsterdam, Amsterdam, The Netherlands *\r\n* CBMPy is developed as part of the BeBasic MetaToolKit Project *\r\n* Distributed under the GNU GPL v 3.0 licence, see *\r\n* LICENCE (supplied with this release) for details *\r\n***********************************************************************\r\n\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpwxih3v5i/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "\r\nINFO: No xlwt module available, Excel spreadsheet creation disabled\r\n\r\n\r\n\r\nNo module named 'cplex'\r\n\r\n\r\n\r\nCPLEX not available\r\n\r\n*****\r\nUsing GLPK\r\n*****\r\n\r\n\r\nINFO: No xlrd module available, Excel spreadsheet reading disabled\r\n\r\nCBMPy environment\r\n******************\r\nRevision: r689\r\n\r\n\r\n***********************************************************************\r\n* Welcome to CBMPy (0.7.25) - PySCeS Constraint Based Modelling *\r\n* http://cbmpy.sourceforge.net *\r\n* Copyright(C) Brett G. Olivier 2014 - 2019 *\r\n* Dept. of Systems Bioinformatics *\r\n* Vrije Universiteit Amsterdam, Amsterdam, The Netherlands *\r\n* CBMPy is developed as part of the BeBasic MetaToolKit Project *\r\n* Distributed under the GNU GPL v 3.0 licence, see *\r\n* LICENCE (supplied with this release) for details *\r\n***********************************************************************\r\n\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpha66extc/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -442,12 +442,12 @@ "cobrapy": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/cobrapy' returned non-zero exit status 1", "log_yml": { - "duration": 0.216432, + "duration": 0.158545, "exception": { "message": "`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp3ppvomy9/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpopgzkji3/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -457,12 +457,12 @@ "copasi": { "exception_message": "", "log_yml": { - "duration": 2.000256, + "duration": 1.431043, "exception": null, - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpa48fmj5t/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpa48fmj5t/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp9c464apg/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp9c464apg/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [ { - "duration": 1.526767, + "duration": 1.099564, "exception": null, "location": "BIOMD0000000001_url.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", @@ -734,7 +734,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.295481, + "duration": 0.274029, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -792,7 +792,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.765147, + "duration": 0.501315, "exception": null, "id": "autogen_plot_for_task1", "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", @@ -805,10 +805,10 @@ "tasks": [ { "algorithm": "KISAO_0000560", - "duration": 0.220913, + "duration": 0.148264, "exception": null, "id": "task1", - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task1_kr_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ILL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_AL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_I__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_D__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ALL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_A__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_t2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_IL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_B__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_comp1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_7__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `BIOMD0000000001_url` may be invalid.\r\n - The model file `/tmp/tmpa48fmj5t/./BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'LSODA/LSODAR hybrid method' (KISAO_0000560) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task1_kf_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_B__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_t2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_D__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_comp1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ILL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ALL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_I__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_IL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_AL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_A__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React13__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `BIOMD0000000001_url` may be invalid.\r\n - The model file `/tmp/tmp9c464apg/./BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'LSODA/LSODAR hybrid method' (KISAO_0000560) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n", "simulatorDetails": [ { "key": "methodName", @@ -833,12 +833,12 @@ "gillespy2": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/gillespy2' returned non-zero exit status 1", "log_yml": { - "duration": 0.188466, + "duration": 0.152, "exception": { "message": "`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp34r8pwto/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpkdmso8af/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -848,12 +848,12 @@ "ginsim": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/ginsim' returned non-zero exit status 1", "log_yml": { - "duration": 0.176294, + "duration": 0.128864, "exception": { "message": "`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpbwmx5fn0/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` may be invalid.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp3vbg7tr5/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` may be invalid.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -863,12 +863,12 @@ "libsbmlsim": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/libsbmlsim' returned non-zero exit status 1", "log_yml": { - "duration": 0.175115, + "duration": 0.179679, "exception": { "message": "`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpq3f7kad5/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` may be invalid.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpmn6h9csd/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` may be invalid.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -878,12 +878,12 @@ "masspy": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/masspy' returned non-zero exit status 1", "log_yml": { - "duration": 0.17209, + "duration": 0.17974, "exception": { "message": "`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mSedmlFeatureNotSupportedWarning\u001b[0m: \u001b[33m`/tmp/tmp76c1ld8t/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mSedmlFeatureNotSupportedWarning\u001b[0m: \u001b[33m`/tmp/tmpt46pzdhi/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -893,7 +893,7 @@ "netpyne": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/netpyne' returned non-zero exit status 1", "log_yml": { - "duration": 0.051213, + "duration": 0.056066, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -908,12 +908,12 @@ "neuron": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/neuron' returned non-zero exit status 1", "log_yml": { - "duration": 0.069633, + "duration": 0.042372, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp2skidr9o/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpr_7h14xr/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -923,12 +923,12 @@ "opencor": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/opencor' returned non-zero exit status 1", "log_yml": { - "duration": 0.083552, + "duration": 0.080298, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpi752n5v7/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", + "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpmmw6_5dk/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -938,12 +938,12 @@ "pyneuroml": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/pyneuroml' returned non-zero exit status 1", "log_yml": { - "duration": 0.057976, + "duration": 0.045287, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpheu2qy5l/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpdaqw5ior/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -953,15 +953,15 @@ "pysces": { "exception_message": "", "log_yml": { - "duration": 1.8624, + "duration": 1.854252, "exception": null, - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp1bvdpoj_/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp1bvdpoj_/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpm8x6ierx/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpm8x6ierx/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [ { - "duration": 1.291807, + "duration": 1.454957, "exception": null, "location": "BIOMD0000000001_url.sedml", - "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V4\r\nINFO: Rescaling compartment with size 1e-16 to 1.0\r\ncsymbol time defined as \"time\" in event \r\nInfo: single compartment model: locating \"React0\" in default compartment\r\nInfo: single compartment model: locating \"React1\" in default compartment\r\nInfo: single compartment model: locating \"React2\" in default compartment\r\nInfo: single compartment model: locating \"React3\" in default compartment\r\nInfo: single compartment model: locating \"React4\" in default compartment\r\nInfo: single compartment model: locating \"React5\" in default compartment\r\nInfo: single compartment model: locating \"React6\" in default compartment\r\nInfo: single compartment model: locating \"React7\" in default compartment\r\nInfo: single compartment model: locating \"React8\" in default compartment\r\nInfo: single compartment model: locating \"React9\" in default compartment\r\nInfo: single compartment model: locating \"React10\" in default compartment\r\nInfo: single compartment model: locating \"React11\" in default compartment\r\nInfo: single compartment model: locating \"React12\" in default compartment\r\nInfo: single compartment model: locating \"React13\" in default compartment\r\nInfo: single compartment model: locating \"React14\" in default compartment\r\nInfo: single compartment model: locating \"React15\" in default compartment\r\nInfo: single compartment model: locating \"React16\" in default compartment\r\nWriting file: /tmp/tmp0of36sck.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmp1rlz78qy.xml\r\nout: /tmp/tmp0of36sck.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmp0of36sck.psc loading ..... \r\nParsing file: /tmp/tmp0of36sck.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"t2\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . done.\r\nCalculating K matrix . . . . . . . done.\r\n \r\nEvent(s) detected.\r\n\r\nINFO: events detected and we have Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\nCVODE time for 1001 points: 0.06111741065979004\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V4\r\nINFO: Rescaling compartment with size 1e-16 to 1.0\r\ncsymbol time defined as \"time\" in event \r\nInfo: single compartment model: locating \"React0\" in default compartment\r\nInfo: single compartment model: locating \"React1\" in default compartment\r\nInfo: single compartment model: locating \"React2\" in default compartment\r\nInfo: single compartment model: locating \"React3\" in default compartment\r\nInfo: single compartment model: locating \"React4\" in default compartment\r\nInfo: single compartment model: locating \"React5\" in default compartment\r\nInfo: single compartment model: locating \"React6\" in default compartment\r\nInfo: single compartment model: locating \"React7\" in default compartment\r\nInfo: single compartment model: locating \"React8\" in default compartment\r\nInfo: single compartment model: locating \"React9\" in default compartment\r\nInfo: single compartment model: locating \"React10\" in default compartment\r\nInfo: single compartment model: locating \"React11\" in default compartment\r\nInfo: single compartment model: locating \"React12\" in default compartment\r\nInfo: single compartment model: locating \"React13\" in default compartment\r\nInfo: single compartment model: locating \"React14\" in default compartment\r\nInfo: single compartment model: locating \"React15\" in default compartment\r\nInfo: single compartment model: locating \"React16\" in default compartment\r\nWriting file: /tmp/tmptkw82oao.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpbq29rf7n.xml\r\nout: /tmp/tmptkw82oao.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmptkw82oao.psc loading ..... \r\nParsing file: /tmp/tmptkw82oao.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"t2\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . done.\r\nCalculating K matrix . . . . . . . done.\r\n \r\nEvent(s) detected.\r\n\r\nINFO: events detected and we have Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\nCVODE time for 1001 points: 0.03949284553527832\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", "outputs": [ { "dataSets": [ @@ -1230,7 +1230,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.343783, + "duration": 0.516309, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -1288,7 +1288,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.481102, + "duration": 0.396995, "exception": null, "id": "autogen_plot_for_task1", "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", @@ -1301,10 +1301,10 @@ "tasks": [ { "algorithm": "KISAO_0000019", - "duration": 0.246468, + "duration": 0.259261, "exception": null, "id": "task1", - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task1_kf_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_comp1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ALL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_AL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_A__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_I__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_IL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_D__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ILL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_t2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_B__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_4__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task1_kr_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_A__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ALL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_AL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ILL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_B__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_t2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_D__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_comp1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_IL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_I__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n", "simulatorDetails": [ { "key": "method", @@ -1341,12 +1341,12 @@ "rbapy": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/rbapy' returned non-zero exit status 1", "log_yml": { - "duration": 0.224329, + "duration": 0.161602, "exception": { "message": "`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp97k3fqra/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` may be invalid.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpu_k9a9mv/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` may be invalid.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1361,12 +1361,12 @@ "tellurium": { "exception_message": "", "log_yml": { - "duration": 1.856703, + "duration": 1.585119, "exception": null, - "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmpfgwihkqx/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmpfgwihkqx/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n", + "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmplpusfrgh/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmplpusfrgh/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n", "sedDocuments": [ { - "duration": 1.296451, + "duration": 1.032478, "exception": null, "location": "BIOMD0000000001_url.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", @@ -1638,7 +1638,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.312898, + "duration": 0.300394, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -1696,7 +1696,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.545357, + "duration": 0.418293, "exception": null, "id": "autogen_plot_for_task1", "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning:\r\n\r\n\u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n\r\n", @@ -1709,10 +1709,10 @@ "tasks": [ { "algorithm": "KISAO_0000019", - "duration": 0.218948, + "duration": 0.150004, "exception": null, "id": "task1", - "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33m- Variable `auto_dg_for_task1_React0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ALL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_IL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_B__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_D__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ILL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_t2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_comp1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_AL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_A__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_I__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_7__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mModel `BIOMD0000000001_url` may be invalid.\r\n - The model file `/tmp/tmpfgwihkqx/./BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning:\r\n\r\n\u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n\r\n", + "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33m- Variable `auto_dg_for_task1_React9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ILL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_B__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_A__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_comp1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_IL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ALL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_AL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_I__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_D__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_t2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_12__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mModel `BIOMD0000000001_url` may be invalid.\r\n - The model file `/tmp/tmplpusfrgh/./BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning:\r\n\r\n\u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n\r\n", "simulatorDetails": [ { "key": "method", @@ -1785,7 +1785,7 @@ "vcell": { "exception_message": "", "log_yml": { - "duration": 16, + "duration": 13, "exception": null, "output": "Processing BIOMD0000000001_url.sedml. Done", "sedDocuments": [ @@ -2152,12 +2152,12 @@ "xpp": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/xpp' returned non-zero exit status 1", "log_yml": { - "duration": 0.07199, + "duration": 0.043889, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpw1eoj_aw/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp4ib7glpc/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" diff --git a/BioModels/BIOMD0000000001/tests/results_remote.json b/BioModels/BIOMD0000000001/tests/results_remote.json index 3f24f903..5243231b 100644 --- a/BioModels/BIOMD0000000001/tests/results_remote.json +++ b/BioModels/BIOMD0000000001/tests/results_remote.json @@ -1,16 +1,16 @@ { "amici": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc49e10bb4455d6187451", - "download": "https://api.biosimulations.org/results/674dc49e10bb4455d6187451/download", - "logs": "https://api.biosimulations.org/logs/674dc49e10bb4455d6187451?includeOutput=true", + "view": "https://api.biosimulations.org/runs/6759986e707aa641046207d2", + "download": "https://api.biosimulations.org/results/6759986e707aa641046207d2/download", + "logs": "https://api.biosimulations.org/logs/6759986e707aa641046207d2?includeOutput=true", "log_yml": { - "duration": 34.42093, + "duration": 34.743231, "exception": null, "output": "", "sedDocuments": [ { - "duration": 33.900116, + "duration": 34.294082, "exception": null, "location": "BIOMD0000000001_url.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", @@ -282,7 +282,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.432449, + "duration": 0.412893, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -340,7 +340,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.581878, + "duration": 0.488225, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -353,7 +353,7 @@ "tasks": [ { "algorithm": "KISAO_0000496", - "duration": 32.711017, + "duration": 33.225571, "exception": null, "id": "task1", "output": "", @@ -383,11 +383,11 @@ }, "brian2": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4a0261553b9bc253ca0", - "download": "https://api.biosimulations.org/results/674dc4a0261553b9bc253ca0/download", - "logs": "https://api.biosimulations.org/logs/674dc4a0261553b9bc253ca0?includeOutput=true", + "view": "https://api.biosimulations.org/runs/6759986f707aa641046207e8", + "download": "https://api.biosimulations.org/results/6759986f707aa641046207e8/download", + "logs": "https://api.biosimulations.org/logs/6759986f707aa641046207e8?includeOutput=true", "log_yml": { - "duration": 0.078477, + "duration": 0.062282, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -400,11 +400,11 @@ }, "bionetgen": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4a2261553b9bc253ca3", - "download": "https://api.biosimulations.org/results/674dc4a2261553b9bc253ca3/download", - "logs": "https://api.biosimulations.org/logs/674dc4a2261553b9bc253ca3?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599874c3054f763d58534c", + "download": "https://api.biosimulations.org/results/67599874c3054f763d58534c/download", + "logs": "https://api.biosimulations.org/logs/67599874c3054f763d58534c?includeOutput=true", "log_yml": { - "duration": 0.198329, + "duration": 0.228823, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -417,11 +417,11 @@ }, "boolnet": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4a4261553b9bc253ca6", - "download": "https://api.biosimulations.org/results/674dc4a4261553b9bc253ca6/download", - "logs": "https://api.biosimulations.org/logs/674dc4a4261553b9bc253ca6?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599878707aa6410462085c", + "download": "https://api.biosimulations.org/results/67599878707aa6410462085c/download", + "logs": "https://api.biosimulations.org/logs/67599878707aa6410462085c?includeOutput=true", "log_yml": { - "duration": 0.192251, + "duration": 0.227526, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -434,11 +434,11 @@ }, "cbmpy": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4a610bb4455d6187455", - "download": "https://api.biosimulations.org/results/674dc4a610bb4455d6187455/download", - "logs": "https://api.biosimulations.org/logs/674dc4a610bb4455d6187455?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599879c3054f763d5853ae", + "download": "https://api.biosimulations.org/results/67599879c3054f763d5853ae/download", + "logs": "https://api.biosimulations.org/logs/67599879c3054f763d5853ae?includeOutput=true", "log_yml": { - "duration": 0.292882, + "duration": 0.370103, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -451,11 +451,11 @@ }, "cobrapy": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4a810bb4455d6187458", - "download": "https://api.biosimulations.org/results/674dc4a810bb4455d6187458/download", - "logs": "https://api.biosimulations.org/logs/674dc4a810bb4455d6187458?includeOutput=true", + "view": "https://api.biosimulations.org/runs/6759987b9fa297efdca4ce9c", + "download": "https://api.biosimulations.org/results/6759987b9fa297efdca4ce9c/download", + "logs": "https://api.biosimulations.org/logs/6759987b9fa297efdca4ce9c?includeOutput=true", "log_yml": { - "duration": 0.22812, + "duration": 0.224675, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -468,16 +468,16 @@ }, "copasi": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4aa261553b9bc253cad", - "download": "https://api.biosimulations.org/results/674dc4aa261553b9bc253cad/download", - "logs": "https://api.biosimulations.org/logs/674dc4aa261553b9bc253cad?includeOutput=true", + "view": "https://api.biosimulations.org/runs/6759987d707aa64104620898", + "download": "https://api.biosimulations.org/results/6759987d707aa64104620898/download", + "logs": "https://api.biosimulations.org/logs/6759987d707aa64104620898?includeOutput=true", "log_yml": { - "duration": 2.005031, + "duration": 1.910214, "exception": null, "output": "", "sedDocuments": [ { - "duration": 1.627087, + "duration": 1.538635, "exception": null, "location": "BIOMD0000000001_url.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...woohoo!\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", @@ -749,7 +749,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.617875, + "duration": 0.428548, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -807,7 +807,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.591273, + "duration": 0.668095, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -820,7 +820,7 @@ "tasks": [ { "algorithm": "KISAO_0000560", - "duration": 0.239033, + "duration": 0.280451, "exception": null, "id": "task1", "output": "", @@ -846,11 +846,11 @@ }, "gillespy2": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4ac10bb4455d618745d", - "download": "https://api.biosimulations.org/results/674dc4ac10bb4455d618745d/download", - "logs": "https://api.biosimulations.org/logs/674dc4ac10bb4455d618745d?includeOutput=true", + "view": "https://api.biosimulations.org/runs/6759987f707aa641046208a7", + "download": "https://api.biosimulations.org/results/6759987f707aa641046208a7/download", + "logs": "https://api.biosimulations.org/logs/6759987f707aa641046208a7?includeOutput=true", "log_yml": { - "duration": 0.21099, + "duration": 0.230086, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -863,11 +863,11 @@ }, "ginsim": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4ae261553b9bc253cb2", - "download": "https://api.biosimulations.org/results/674dc4ae261553b9bc253cb2/download", - "logs": "https://api.biosimulations.org/logs/674dc4ae261553b9bc253cb2?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599880707aa641046208c9", + "download": "https://api.biosimulations.org/results/67599880707aa641046208c9/download", + "logs": "https://api.biosimulations.org/logs/67599880707aa641046208c9?includeOutput=true", "log_yml": { - "duration": 0.183826, + "duration": 0.219107, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -880,11 +880,11 @@ }, "libsbmlsim": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4b0ef911d5d452598d2", - "download": "https://api.biosimulations.org/results/674dc4b0ef911d5d452598d2/download", - "logs": "https://api.biosimulations.org/logs/674dc4b0ef911d5d452598d2?includeOutput=true", + "view": "https://api.biosimulations.org/runs/675998829fa297efdca4cf0b", + "download": "https://api.biosimulations.org/results/675998829fa297efdca4cf0b/download", + "logs": "https://api.biosimulations.org/logs/675998829fa297efdca4cf0b?includeOutput=true", "log_yml": { - "duration": 0.238018, + "duration": 0.224774, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -897,11 +897,11 @@ }, "masspy": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4b210bb4455d6187463", - "download": "https://api.biosimulations.org/results/674dc4b210bb4455d6187463/download", - "logs": "https://api.biosimulations.org/logs/674dc4b210bb4455d6187463?includeOutput=true", + "view": "https://api.biosimulations.org/runs/675998849fa297efdca4cf2a", + "download": "https://api.biosimulations.org/results/675998849fa297efdca4cf2a/download", + "logs": "https://api.biosimulations.org/logs/675998849fa297efdca4cf2a?includeOutput=true", "log_yml": { - "duration": 1.69877, + "duration": 1.596004, "exception": { "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n Could not load MassModel 'BIOMD0000000001'", "type": "CombineArchiveExecutionError" @@ -909,7 +909,7 @@ "output": "", "sedDocuments": [ { - "duration": 1.072114, + "duration": 0.997565, "exception": { "message": "The SED document did not execute successfully:\n\n Could not load MassModel 'BIOMD0000000001'", "type": "SedmlExecutionError" @@ -1184,7 +1184,7 @@ "status": "SKIPPED" } ], - "duration": 0.074924, + "duration": 0.058288, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -1242,7 +1242,7 @@ "status": "SKIPPED" } ], - "duration": 0.376117, + "duration": 0.341506, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -1255,7 +1255,7 @@ "tasks": [ { "algorithm": null, - "duration": 0.395851, + "duration": 0.374972, "exception": { "message": "Could not load MassModel 'BIOMD0000000001'", "type": "MassSimulationError" @@ -1275,11 +1275,11 @@ }, "netpyne": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4b410bb4455d6187470", - "download": "https://api.biosimulations.org/results/674dc4b410bb4455d6187470/download", - "logs": "https://api.biosimulations.org/logs/674dc4b410bb4455d6187470?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599885c3054f763d585469", + "download": "https://api.biosimulations.org/results/67599885c3054f763d585469/download", + "logs": "https://api.biosimulations.org/logs/67599885c3054f763d585469?includeOutput=true", "log_yml": { - "duration": 0.068815, + "duration": 0.078228, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -1292,11 +1292,11 @@ }, "neuron": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4b5261553b9bc253cc5", - "download": "https://api.biosimulations.org/results/674dc4b5261553b9bc253cc5/download", - "logs": "https://api.biosimulations.org/logs/674dc4b5261553b9bc253cc5?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599887707aa64104620929", + "download": "https://api.biosimulations.org/results/67599887707aa64104620929/download", + "logs": "https://api.biosimulations.org/logs/67599887707aa64104620929?includeOutput=true", "log_yml": { - "duration": 0.072554, + "duration": 0.049125, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -1309,16 +1309,16 @@ }, "opencor": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4b710bb4455d6187475", - "download": "https://api.biosimulations.org/results/674dc4b710bb4455d6187475/download", - "logs": "https://api.biosimulations.org/logs/674dc4b710bb4455d6187475?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599889707aa64104620949", + "download": "https://api.biosimulations.org/results/67599889707aa64104620949/download", + "logs": "https://api.biosimulations.org/logs/67599889707aa64104620949?includeOutput=true", "log_yml": { - "duration": 0.064603, + "duration": 0.042642, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp8qdnji7v/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", + "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpzxwfq98w/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1326,11 +1326,11 @@ }, "pyneuroml": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4b910bb4455d618747c", - "download": "https://api.biosimulations.org/results/674dc4b910bb4455d618747c/download", - "logs": "https://api.biosimulations.org/logs/674dc4b910bb4455d618747c?includeOutput=true", + "view": "https://api.biosimulations.org/runs/6759988a9fa297efdca4cf90", + "download": "https://api.biosimulations.org/results/6759988a9fa297efdca4cf90/download", + "logs": "https://api.biosimulations.org/logs/6759988a9fa297efdca4cf90?includeOutput=true", "log_yml": { - "duration": 0.091066, + "duration": 0.056714, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -1343,19 +1343,19 @@ }, "pysces": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4bbef911d5d452598e2", - "download": "https://api.biosimulations.org/results/674dc4bbef911d5d452598e2/download", - "logs": "https://api.biosimulations.org/logs/674dc4bbef911d5d452598e2?includeOutput=true", + "view": "https://api.biosimulations.org/runs/6759988d707aa6410462098c", + "download": "https://api.biosimulations.org/results/6759988d707aa6410462098c/download", + "logs": "https://api.biosimulations.org/logs/6759988d707aa6410462098c?includeOutput=true", "log_yml": { - "duration": 1.614328, + "duration": 1.865952, "exception": null, "output": "libtk8.6.so: cannot open shared object file: No such file or directory\r\n\r\nPySCeS defaults to matplotlib's TKagg backend if not specified in the user configuration file, set \"matplotlib_backend = \" \r\nMatplotlib interface loaded (pysces.plt.m)\r\nPitcon routines available\r\nNLEQ2 routines available\r\nSBML support available\r\nYou are using NumPy (2.1.2) with SciPy (1.14.1)\r\nAssimulo CVode available\r\nRateChar is available\r\nParallel scanner is available\r\n\r\nPySCeS environment\r\n******************\r\npysces.model_dir = /home/FCAM/crbmapi/Pysces/psc\r\npysces.output_dir = /home/FCAM/crbmapi/Pysces\r\n\r\n\r\n***********************************************************************\r\n* Welcome to PySCeS (1.2.2) - Python Simulator for Cellular Systems *\r\n* http://pysces.sourceforge.net *\r\n* Copyright(C) B.G. Olivier, J.M. Rohwer, J.-H.S. Hofmeyr, 2004-2024 *\r\n* Triple-J Group for Molecular Cell Physiology *\r\n* Stellenbosch University, ZA and VU University Amsterdam, NL *\r\n* PySCeS is distributed under the PySCeS (BSD style) licence, see *\r\n* LICENCE.txt (supplied with this release) for details *\r\n* Please cite PySCeS with: doi:10.1093/bioinformatics/bti046 *\r\n***********************************************************************\r\n", "sedDocuments": [ { - "duration": 1.296853, + "duration": 1.473278, "exception": null, "location": "BIOMD0000000001_url.sedml", - "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V4\r\nINFO: Rescaling compartment with size 1e-16 to 1.0\r\ncsymbol time defined as \"time\" in event \r\nInfo: single compartment model: locating \"React0\" in default compartment\r\nInfo: single compartment model: locating \"React1\" in default compartment\r\nInfo: single compartment model: locating \"React2\" in default compartment\r\nInfo: single compartment model: locating \"React3\" in default compartment\r\nInfo: single compartment model: locating \"React4\" in default compartment\r\nInfo: single compartment model: locating \"React5\" in default compartment\r\nInfo: single compartment model: locating \"React6\" in default compartment\r\nInfo: single compartment model: locating \"React7\" in default compartment\r\nInfo: single compartment model: locating \"React8\" in default compartment\r\nInfo: single compartment model: locating \"React9\" in default compartment\r\nInfo: single compartment model: locating \"React10\" in default compartment\r\nInfo: single compartment model: locating \"React11\" in default compartment\r\nInfo: single compartment model: locating \"React12\" in default compartment\r\nInfo: single compartment model: locating \"React13\" in default compartment\r\nInfo: single compartment model: locating \"React14\" in default compartment\r\nInfo: single compartment model: locating \"React15\" in default compartment\r\nInfo: single compartment model: locating \"React16\" in default compartment\r\nWriting file: /tmp/tmpnk0gukmy.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpef1rqg3q.xml\r\nout: /tmp/tmpnk0gukmy.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmpnk0gukmy.psc loading ..... \r\nParsing file: /tmp/tmpnk0gukmy.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"t2\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . done.\r\nCalculating K matrix . . . . . . . done.\r\n \r\nEvent(s) detected.\r\n\r\nINFO: events detected and we have Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\nCVODE time for 1001 points: 0.07132816314697266\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V4\r\nINFO: Rescaling compartment with size 1e-16 to 1.0\r\ncsymbol time defined as \"time\" in event \r\nInfo: single compartment model: locating \"React0\" in default compartment\r\nInfo: single compartment model: locating \"React1\" in default compartment\r\nInfo: single compartment model: locating \"React2\" in default compartment\r\nInfo: single compartment model: locating \"React3\" in default compartment\r\nInfo: single compartment model: locating \"React4\" in default compartment\r\nInfo: single compartment model: locating \"React5\" in default compartment\r\nInfo: single compartment model: locating \"React6\" in default compartment\r\nInfo: single compartment model: locating \"React7\" in default compartment\r\nInfo: single compartment model: locating \"React8\" in default compartment\r\nInfo: single compartment model: locating \"React9\" in default compartment\r\nInfo: single compartment model: locating \"React10\" in default compartment\r\nInfo: single compartment model: locating \"React11\" in default compartment\r\nInfo: single compartment model: locating \"React12\" in default compartment\r\nInfo: single compartment model: locating \"React13\" in default compartment\r\nInfo: single compartment model: locating \"React14\" in default compartment\r\nInfo: single compartment model: locating \"React15\" in default compartment\r\nInfo: single compartment model: locating \"React16\" in default compartment\r\nWriting file: /tmp/tmpg5lywq8j.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpii1g4uod.xml\r\nout: /tmp/tmpg5lywq8j.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmpg5lywq8j.psc loading ..... \r\nParsing file: /tmp/tmpg5lywq8j.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"t2\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . done.\r\nCalculating K matrix . . . . . . . done.\r\n \r\nEvent(s) detected.\r\n\r\nINFO: events detected and we have Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\nCVODE time for 1001 points: 0.07738018035888672\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", "outputs": [ { "dataSets": [ @@ -1624,7 +1624,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.354192, + "duration": 0.408972, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -1682,7 +1682,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.457523, + "duration": 0.535191, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -1695,7 +1695,7 @@ "tasks": [ { "algorithm": "KISAO_0000019", - "duration": 0.31707, + "duration": 0.35353, "exception": null, "id": "task1", "output": "", @@ -1733,11 +1733,11 @@ }, "rbapy": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4bcef911d5d452598e9", - "download": "https://api.biosimulations.org/results/674dc4bcef911d5d452598e9/download", - "logs": "https://api.biosimulations.org/logs/674dc4bcef911d5d452598e9?includeOutput=true", + "view": "https://api.biosimulations.org/runs/6759988f9fa297efdca4cfc3", + "download": "https://api.biosimulations.org/results/6759988f9fa297efdca4cfc3/download", + "logs": "https://api.biosimulations.org/logs/6759988f9fa297efdca4cfc3?includeOutput=true", "log_yml": { - "duration": 0.177701, + "duration": 0.210301, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -1750,11 +1750,11 @@ }, "smoldyn": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4be10bb4455d6187487", - "download": "https://api.biosimulations.org/results/674dc4be10bb4455d6187487/download", - "logs": "https://api.biosimulations.org/logs/674dc4be10bb4455d6187487?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599892707aa641046209f2", + "download": "https://api.biosimulations.org/results/67599892707aa641046209f2/download", + "logs": "https://api.biosimulations.org/logs/67599892707aa641046209f2?includeOutput=true", "log_yml": { - "duration": 0.051893, + "duration": 0.055518, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -1767,16 +1767,16 @@ }, "tellurium": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4c010bb4455d618748a", - "download": "https://api.biosimulations.org/results/674dc4c010bb4455d618748a/download", - "logs": "https://api.biosimulations.org/logs/674dc4c010bb4455d618748a?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599894707aa64104620a2b", + "download": "https://api.biosimulations.org/results/67599894707aa64104620a2b/download", + "logs": "https://api.biosimulations.org/logs/67599894707aa64104620a2b?includeOutput=true", "log_yml": { - "duration": 2.16265, + "duration": 2.042794, "exception": null, "output": "", "sedDocuments": [ { - "duration": 1.573024, + "duration": 1.51381, "exception": null, "location": "BIOMD0000000001_url.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", @@ -2048,7 +2048,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.430861, + "duration": 0.449744, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -2106,7 +2106,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.633544, + "duration": 0.589555, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -2119,7 +2119,7 @@ "tasks": [ { "algorithm": "KISAO_0000019", - "duration": 0.30838, + "duration": 0.291824, "exception": null, "id": "task1", "output": "", @@ -2193,11 +2193,11 @@ }, "vcell": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4c510bb4455d61874b6", - "download": "https://api.biosimulations.org/results/674dc4c510bb4455d61874b6/download", - "logs": "https://api.biosimulations.org/logs/674dc4c510bb4455d61874b6?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599897707aa64104620aaf", + "download": "https://api.biosimulations.org/results/67599897707aa64104620aaf/download", + "logs": "https://api.biosimulations.org/logs/67599897707aa64104620aaf?includeOutput=true", "log_yml": { - "duration": 14, + "duration": 13, "exception": null, "output": "Processing BIOMD0000000001_url.sedml. Done", "sedDocuments": [ @@ -2562,11 +2562,11 @@ }, "xpp": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc4c7ef911d5d45259935", - "download": "https://api.biosimulations.org/results/674dc4c7ef911d5d45259935/download", - "logs": "https://api.biosimulations.org/logs/674dc4c7ef911d5d45259935?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599899c3054f763d58561d", + "download": "https://api.biosimulations.org/results/67599899c3054f763d58561d/download", + "logs": "https://api.biosimulations.org/logs/67599899c3054f763d58561d?includeOutput=true", "log_yml": { - "duration": 0.077165, + "duration": 0.064341, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" diff --git a/BioModels/BIOMD0000000138/BIOMD0000000138_url.sedml b/BioModels/BIOMD0000000138/BIOMD0000000138_url.sedml index 5b750ae2..13802d13 100644 --- a/BioModels/BIOMD0000000138/BIOMD0000000138_url.sedml +++ b/BioModels/BIOMD0000000138/BIOMD0000000138_url.sedml @@ -4,7 +4,7 @@ - + @@ -414,24 +414,12 @@ - + - - - - - - - - - - - - diff --git a/BioModels/BIOMD0000000138/tests/d1_plots_local/amici_autogen_plot_for_task1.pdf b/BioModels/BIOMD0000000138/tests/d1_plots_local/amici_autogen_plot_for_task1.pdf new file mode 100644 index 0000000000000000000000000000000000000000..17a44568183179bb3f82ffcb0eaee5081f1a3cc1 GIT binary patch literal 5948 zcmb_g30PA}5=I4qD9RzaUifeYWfb0(mxB=u5II!j6i@^SAwW11NTPz*cp@k`sGKSy z4hSkLD67thih`))0gMQa!gwO?h>nXWGoyps{gOZi*mb`BHu>u7_v%$w|6NsG-PIPJ zd}nLihRLufZ9$HH$G{N`k%mSwX3s`Y-^4f(f;tHlf*5H8f_e%fL~?`x0^W$dJwqf3 zgMu854$e}E0wHMuG{7S?N+eVuY~}0R1ci%_LZA>KOeMoppiqcp5`==U4Adu55GIyH zAS~5anN;W_QXqj~SiUoWB1%vos9P+6;HYYyRIM8lqyYyXI01+oqL+yPIwgG6TO^k* zmkGgqAbv2uyC_U7aFiy15i#&*vM?JCLNX~E7Eq5mfr)|Ma)hgd=OB?t!5a=mHH`s3 ztF5;{B#BT&BDiWqXK@UeFM>M903+~4LTQ)?!j>y!B0(%8VP9tEImtxaaPI1LIyVa6 zLTZ z`N9ineR%YS61@1)VqPxy*IT!(n1S9UHye5Hi=JW2YJ8ll?_@mYPB)$iha>zrHFnOqvb+bxQ< z-TOGYe#nxJy<27~QXkY$O_yi9eD%$>^AnQi&H>G5|`;*(s>@5gM*6YQ?YTsP_GvWt_0kMy{6)?L4Se&n5XuWkH3JkELl za*=MM&zHrIdxmA5N;HIvMdfMLvZ2EQh65F;R>llS6)iRztXECgjmh$YAGjE6@LxzU8#f_hsW0kXh@uA_*J@K4T2TBhg-dLW( z%@Ao7rY*Sjh{+!w6*yLIjv(K4FYSBwMcTQ&*QT5o-et=(|gc9X6b<+-t4VQ z^j_3j`9T`((4_XWS?){%ySUmdfy=%z1xQ!wK4T5iu%bp55~GJ~^^?FfgmY0s@3 zYb9Re_ZT}E3EFp>mK1vCFTVWH>-EcSLMKX^S~Nm9sY|~?$1&EmX6Vm6Eq+Ia@3Hh9 z5z|aAnzlxSP6}ynI636_cwc_j>W-_)hi{jpR`P4?J=}kvk+s0uuU6tSe%Z&2)W$Um zoi7eEJ2N`#7oDmf5s;E-{GR*K_1E^M81p1sNmFM^+Z6H&VSGDeJ~yNw`>D&L2aA^* z9iRN|+1rW@Q!<<47F4`kckP`=kK)0STgxkDdIx!J?hbFxjXLgJUQycMS|yp21ZKZksAFm|9%37BvDF9zo4T{<`Il2H|+r~S#-L7&06 z?_s%n>-$e>hQykX_EE1l>x?*^=sZOy(=ymJKzE+7#q(?4`NuNr>n%E?_Jd!Zb7OA!6E+w%G7gk$?{hp3ejF? z`QF|ut*(ezoVO_m%Fkr^eJ- zpKz%&I%Cby_A;>x$VE-3Hr92$uq}z3m%qVZ@64Eqm7CnOHbwoaYgR-ep6$HabD@Oy zu#MC1$;I({DKg8HuL>*oKb(H7u%OFsaqf+WyXP0xPj+AUV#t;6uecoua{KK-Zq7XZ zuI!g<%N@Its&>t`cfqf(?_j0G9@MdHH!HHZSu@7A?CQ|U@I7}Iy$HE%w$&=tf5fR0 zvzX36lgz@&$DWS=5&P)|<`Y`*xJ;+$a!ViOb2aymkjw$Gy(FwNkGkvS;Gh z?;ifAZe^&J7FozF7Ng5qta zk3&l*b-iN^8|Ni1?c}*u{UI6sPJVLt!-V@s$83W-?cQ~jAFKDRanc{pFLfP9@|xw5}v&2k~rt=kUg`9 zI5jtvcsY$Tt8XmwnNilFZNKe|WOS?W9~-hyo42PRp)^|7#fy8FXPm+8fkggsp0;=_YBE*@y!}&A7F|;`zXr@x;8)^ z1#*$<$=%C~?>Cb#iW2xO_Yp|sFcZk+3a3bc40J{p2vpAmMKMs=hcA)~W#Tx6REFTH zBEn~RsDdt1;20pqE)>LqqrPK*)yn>k%HzE?juALw&18`X&gL?~0i7h_86OVeE>OtC zbPZsGVK9w@fA3Qe1BKu`L1_Yx{&ba? zVc7qJ82_st66YXH5D%a#L^vb|VUa8bm%

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b/BioModels/BIOMD0000000138/tests/results_compatibility_biosimulators.md @@ -1,23 +1,23 @@ -| Engine | Compatibility | pass / FAIL (R) | pass / FAIL (L) | d1 (R) | d1 (L) | -|:-------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:---------------------------------------------------------------|:--------------------------------------------------------------| -|

AMICIhttps://docs.biosimulators.org/Biosimulators_AMICI/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with AMICI.

SED-ML and SBML are compatible with AMICI.
|
❌ FAILview
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logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
| plot | plot | -|
BioNetGenhttps://docs.biosimulators.org/Biosimulators_BioNetGen/
|
⚠ XFAILEXPECTED FAIL

Only BNGL, SED-ML are compatible with BioNetGen.
|
⚠ XFAILEXPECTED FAIL

view
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logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
| | | -|
BoolNethttps://docs.biosimulators.org/Biosimulators_BoolNet/
|
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with BoolNet.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
| | | -|
Brian 2https://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with Brian 2.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
CBMPyhttps://docs.biosimulators.org/Biosimulators_CBMPy/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with CBMPy.

SED-ML and SBML are compatible with CBMPy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
| | | -|
COBRApyhttps://docs.biosimulators.org/Biosimulators_COBRApy/
Only allows steady state simulations
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COBRApy.

SED-ML and SBML are compatible with COBRApy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
| | | -|
COPASIhttps://docs.biosimulators.org/Biosimulators_COPASI/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COPASI.

SED-ML and SBML are compatible with COPASI.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
| plot | plot | -|
GillesPy2https://docs.biosimulators.org/Biosimulators_GillesPy2/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with GillesPy2.

SED-ML and SBML are compatible with GillesPy2.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
| | | -|
GINsimhttps://docs.biosimulators.org/Biosimulators_GINsim/
|
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with GINsim.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
| | | -|
LibSBMLSimhttps://docs.biosimulators.org/Biosimulators_LibSBMLSim/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with LibSBMLSim.

SED-ML and SBML are compatible with LibSBMLSim.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
| | | -|
MASSpyhttps://docs.biosimulators.org/Biosimulators_MASSpy/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with MASSpy.

SED-ML and SBML are compatible with MASSpy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
| plot | | -|
NetPyNEhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NetPyNE.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
NEURONhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NEURON.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
OpenCORhttps://docs.biosimulators.org/Biosimulators_OpenCOR/
|
⚠ XFAILEXPECTED FAIL

Only CellML, SED-ML are compatible with OpenCOR.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
pyNeuroMLhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with pyNeuroML.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
PySCeShttps://docs.biosimulators.org/Biosimulators_PySCeS/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with PySCeS.

SED-ML and SBML are compatible with PySCeS.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
| plot | plot | -|
RBApyhttps://docs.biosimulators.org/Biosimulators_RBApy/
|
⚠ XFAILEXPECTED FAIL

Only RBApy, SED-ML are compatible with RBApy.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
| | | -|
Smoldynhttps://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api
|
⚠ XFAILEXPECTED FAIL

Only Smoldyn, SED-ML are compatible with Smoldyn.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
Error unknown. The log.yml containing error information was not found.

| | | -|
Telluriumhttps://docs.biosimulators.org/Biosimulators_tellurium/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with Tellurium.

SED-ML and SBML are compatible with Tellurium.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Output `autogen_plot3` is invalid.
- Plot must have at least one curve.

ERROR TYPE:
ValueError
| plot | plot | -|
VCellhttps://github.com/virtualcell/vcell
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with VCell.

BNGL, SED-ML and SBML are compatible with VCell.
|
✅ PASSview
download
logs

|
❌ FAILERROR MESSAGE:
Runtime Exception

| | plot | -|
XPPhttps://docs.biosimulators.org/Biosimulators_XPP/
|
⚠ XFAILEXPECTED FAIL

Only XPP, SED-ML are compatible with XPP.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | \ No newline at end of file +| Engine | Compatibility | pass / FAIL (R) | pass / FAIL (L) | d1 (R) | d1 (L) | +|:-------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:------------------------------------------------------------------------|:-----------------------------------------------------------------------| +|
AMICIhttps://docs.biosimulators.org/Biosimulators_AMICI/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with AMICI.

SBML and SED-ML are compatible with AMICI.
|
❌ FAILview
download
logs

ERROR MESSAGE:
lambda * (phik - n) / taun

ERROR TYPE:
CombineArchiveExecutionError
|
❌ FAILERROR MESSAGE:
lambda * (phik - n) / taun

ERROR TYPE:
CombineArchiveExecutionError
| plot | plot | +|
BioNetGenhttps://docs.biosimulators.org/Biosimulators_BioNetGen/
|
⚠ XFAILEXPECTED FAIL

Only BNGL, SED-ML are compatible with BioNetGen.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
BoolNethttps://docs.biosimulators.org/Biosimulators_BoolNet/
|
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with BoolNet.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
Brian 2https://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with Brian 2.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
CBMPyhttps://docs.biosimulators.org/Biosimulators_CBMPy/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with CBMPy.

SBML and SED-ML are compatible with CBMPy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
COBRApyhttps://docs.biosimulators.org/Biosimulators_COBRApy/
Only allows steady state simulations
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COBRApy.

SBML and SED-ML are compatible with COBRApy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
COPASIhttps://docs.biosimulators.org/Biosimulators_COPASI/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COPASI.

SBML and SED-ML are compatible with COPASI.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | +|
GillesPy2https://docs.biosimulators.org/Biosimulators_GillesPy2/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with GillesPy2.

SBML and SED-ML are compatible with GillesPy2.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
GINsimhttps://docs.biosimulators.org/Biosimulators_GINsim/
|
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with GINsim.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
LibSBMLSimhttps://docs.biosimulators.org/Biosimulators_LibSBMLSim/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with LibSBMLSim.

SBML and SED-ML are compatible with LibSBMLSim.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
MASSpyhttps://docs.biosimulators.org/Biosimulators_MASSpy/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with MASSpy.

SBML and SED-ML are compatible with MASSpy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Something went wrong reading the SBML model. Most likely the SBML model is not valid. Please check that your model is valid using the `mass.io.sbml.validate_sbml_model` function or via the online validator at http://sbml.org/validator .
`(model, errors) = validate_sbml_model(filename)`
If the model is valid and cannot be read please open an issue at https://github.com/SBRG/masspy/issues .

ERROR TYPE:
CombineArchiveExecutionError
|
❌ FAILERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| plot | | +|
NetPyNEhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NetPyNE.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
NEURONhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NEURON.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
OpenCORhttps://docs.biosimulators.org/Biosimulators_OpenCOR/
|
⚠ XFAILEXPECTED FAIL

Only CellML, SED-ML are compatible with OpenCOR.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
pyNeuroMLhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with pyNeuroML.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
PySCeShttps://docs.biosimulators.org/Biosimulators_PySCeS/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with PySCeS.

SBML and SED-ML are compatible with PySCeS.
|
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

class 'AttributeError':'PysMod' object has no attribute 'lambda'

ERROR TYPE:
CombineArchiveExecutionError
|
❌ FAILERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

class 'AttributeError':'PysMod' object has no attribute 'lambda'

ERROR TYPE:
CombineArchiveExecutionError
| plot | plot | +|
RBApyhttps://docs.biosimulators.org/Biosimulators_RBApy/
|
⚠ XFAILEXPECTED FAIL

Only RBApy, SED-ML are compatible with RBApy.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
- Simulation `auto_ten_seconds` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
Smoldynhttps://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api
|
⚠ XFAILEXPECTED FAIL

Only Smoldyn, SED-ML are compatible with Smoldyn.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
Error unknown. The log.yml containing error information was not found.

| | | +|
Telluriumhttps://docs.biosimulators.org/Biosimulators_tellurium/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with Tellurium.

SBML and SED-ML are compatible with Tellurium.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | +|
VCellhttps://github.com/virtualcell/vcell
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with VCell.

SBML, SED-ML and BNGL are compatible with VCell.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | +|
XPPhttps://docs.biosimulators.org/Biosimulators_XPP/
|
⚠ XFAILEXPECTED FAIL

Only XPP, SED-ML are compatible with XPP.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | \ No newline at end of file diff --git a/BioModels/BIOMD0000000138/tests/results_local.json b/BioModels/BIOMD0000000138/tests/results_local.json index 5ea3813a..b139b252 100644 --- a/BioModels/BIOMD0000000138/tests/results_local.json +++ b/BioModels/BIOMD0000000138/tests/results_local.json @@ -2,13 +2,242 @@ "amici": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/amici' returned non-zero exit status 1", "log_yml": { - "duration": 0.232865, + "duration": 1.032238, "exception": { - "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", - "type": "ValueError" + "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n rateRule \"lambda * (phik - n) / taun\" contains an unsupported expression: Sympify of expression 'could not parse 'lambda * (phik - n) / taun'' failed, because of exception being raised:\n TokenError: Starred arguments in lambda not supported.", + "type": "CombineArchiveExecutionError" }, "output": "", - "sedDocuments": [], + "sedDocuments": [ + { + "duration": 0.617973, + "exception": { + "message": "The SED document did not execute successfully:\n\n rateRule \"lambda * (phik - n) / taun\" contains an unsupported expression: Sympify of expression 'could not parse 'lambda * (phik - n) / taun'' failed, because of exception being raised:\n TokenError: Starred arguments in lambda not supported.", + "type": "SedmlExecutionError" + }, + "location": "BIOMD0000000138_url.sedml", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000138_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 44 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000138_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[31mfailed\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[36mqueued\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", + "outputs": [ + { + "dataSets": [ + { + "id": "autogen_time_for_task1", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_c", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vca", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_Cm", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gcal", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gsk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ga", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vn", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_va", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vm", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vh", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sn", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sa", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sm", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sh", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_taun", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_tauh", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_lambda", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_kc", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ks", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ff", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_alpha", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phik", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phia", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phih", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phif", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phical", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_cinf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ica", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_isk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ibk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ikdr", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ia", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ik", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_n", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_h", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_V", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_cell", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_reaction_0000004", + "status": "SKIPPED" + } + ], + "duration": 0.070374, + "exception": null, + "id": "autogen_report_for_task1", + "output": "", + "skipReason": null, + "status": "SKIPPED" + }, + { + "curves": [ + { + "id": "autogen_curve_task1_c", + "status": "SKIPPED" + } + ], + "duration": 0.303367, + "exception": null, + "id": "autogen_plot_for_task1", + "output": "", + "skipReason": null, + "status": "SKIPPED" + } + ], + "skipReason": null, + "status": "FAILED", + "tasks": [ + { + "algorithm": null, + "duration": 0.103595, + "exception": { + "message": "rateRule \"lambda * (phik - n) / taun\" contains an unsupported expression: Sympify of expression 'could not parse 'lambda * (phik - n) / taun'' failed, because of exception being raised:\nTokenError: Starred arguments in lambda not supported.", + "type": "SBMLException" + }, + "id": "task1", + "output": "", + "simulatorDetails": null, + "skipReason": null, + "status": "FAILED" + } + ] + } + ], "skipReason": null, "status": "FAILED" }, @@ -17,12 +246,12 @@ "brian2": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/brian2' returned non-zero exit status 1", "log_yml": { - "duration": 0.047684, + "duration": 0.057646, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "WARNING /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpx0vgohlx/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n [py.warnings]\r\npyNeuroML >>> WARNING - /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpx0vgohlx/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n\r\n", + "output": "WARNING /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmprl_sq5nd/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n [py.warnings]\r\npyNeuroML >>> WARNING - /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmprl_sq5nd/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -32,12 +261,12 @@ "bionetgen": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/bionetgen' returned non-zero exit status 1", "log_yml": { - "duration": 0.119514, + "duration": 0.321758, "exception": { - "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", + "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpq4pve922/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmppw3rmx7z/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -47,12 +276,12 @@ "boolnet": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/boolnet' returned non-zero exit status 1", "log_yml": { - "duration": 0.149829, + "duration": 0.13801, "exception": { - "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", + "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpdn6t5rna/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` may be invalid.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpizrdsji4/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` may be invalid.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -62,12 +291,12 @@ "cbmpy": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/cbmpy' returned non-zero exit status 1", "log_yml": { - "duration": 0.243411, + "duration": 0.272314, "exception": { - "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", + "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "\r\nINFO: No xlwt module available, Excel spreadsheet creation disabled\r\n\r\n\r\n\r\nNo module named 'cplex'\r\n\r\n\r\n\r\nCPLEX not available\r\n\r\n*****\r\nUsing GLPK\r\n*****\r\n\r\n\r\nINFO: No xlrd module available, Excel spreadsheet reading disabled\r\n\r\nCBMPy environment\r\n******************\r\nRevision: r689\r\n\r\n\r\n***********************************************************************\r\n* Welcome to CBMPy (0.7.25) - PySCeS Constraint Based Modelling *\r\n* http://cbmpy.sourceforge.net *\r\n* Copyright(C) Brett G. Olivier 2014 - 2019 *\r\n* Dept. of Systems Bioinformatics *\r\n* Vrije Universiteit Amsterdam, Amsterdam, The Netherlands *\r\n* CBMPy is developed as part of the BeBasic MetaToolKit Project *\r\n* Distributed under the GNU GPL v 3.0 licence, see *\r\n* LICENCE (supplied with this release) for details *\r\n***********************************************************************\r\n\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpnagbpqkf/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "\r\nINFO: No xlwt module available, Excel spreadsheet creation disabled\r\n\r\n\r\n\r\nNo module named 'cplex'\r\n\r\n\r\n\r\nCPLEX not available\r\n\r\n*****\r\nUsing GLPK\r\n*****\r\n\r\n\r\nINFO: No xlrd module available, Excel spreadsheet reading disabled\r\n\r\nCBMPy environment\r\n******************\r\nRevision: r689\r\n\r\n\r\n***********************************************************************\r\n* Welcome to CBMPy (0.7.25) - PySCeS Constraint Based Modelling *\r\n* http://cbmpy.sourceforge.net *\r\n* Copyright(C) Brett G. Olivier 2014 - 2019 *\r\n* Dept. of Systems Bioinformatics *\r\n* Vrije Universiteit Amsterdam, Amsterdam, The Netherlands *\r\n* CBMPy is developed as part of the BeBasic MetaToolKit Project *\r\n* Distributed under the GNU GPL v 3.0 licence, see *\r\n* LICENCE (supplied with this release) for details *\r\n***********************************************************************\r\n\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp9_kx444p/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -77,12 +306,12 @@ "cobrapy": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/cobrapy' returned non-zero exit status 1", "log_yml": { - "duration": 0.153885, + "duration": 0.130785, "exception": { - "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", + "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpw7m6sol2/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpsdnf6zwy/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -90,29 +319,258 @@ "detailed_error_log": {} }, "copasi": { - "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/copasi' returned non-zero exit status 1", + "exception_message": "", "log_yml": { - "duration": 0.229305, - "exception": { - "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", - "type": "ValueError" - }, - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpgd_wnzus/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", - "sedDocuments": [], + "duration": 1.23765, + "exception": null, + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpp12xqjof/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpp12xqjof/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "sedDocuments": [ + { + "duration": 0.988234, + "exception": null, + "location": "BIOMD0000000138_url.sedml", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000138_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 44 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000138_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", + "outputs": [ + { + "dataSets": [ + { + "id": "autogen_time_for_task1", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_c", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vca", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_Cm", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_gk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_gcal", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_gsk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ga", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_gf", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vn", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_va", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vm", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vh", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vf", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_sn", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_sa", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_sm", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_sh", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_sf", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_taun", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_tauh", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_lambda", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_kc", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ks", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ff", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_alpha", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_phik", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_phia", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_phih", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_phif", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_phical", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_cinf", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ica", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_isk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ibk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ikdr", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ia", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ik", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_n", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_h", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_V", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_cell", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_reaction_0000004", + "status": "SUCCEEDED" + } + ], + "duration": 0.188624, + "exception": null, + "id": "autogen_report_for_task1", + "output": "", + "skipReason": null, + "status": "SUCCEEDED" + }, + { + "curves": [ + { + "id": "autogen_curve_task1_c", + "status": "SUCCEEDED" + } + ], + "duration": 0.404789, + "exception": null, + "id": "autogen_plot_for_task1", + "output": "", + "skipReason": null, + "status": "SUCCEEDED" + } + ], + "skipReason": null, + "status": "SUCCEEDED", + "tasks": [ + { + "algorithm": "KISAO_0000560", + "duration": 0.105681, + "exception": null, + "id": "task1", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task1_gcal__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_taun__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_isk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phia__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ks__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ga__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_tauh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phif__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phih__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ik__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phical__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_Cm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_alpha__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_cinf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vca__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ff__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_va__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_c__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_n__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_h__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gsk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_reaction_0000004__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phik__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ica__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ia__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_V__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ibk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_lambda__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ikdr__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `BIOMD0000000138_url` may be invalid.\r\n - The model file `/tmp/tmpp12xqjof/./BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'LSODA/LSODAR hybrid method' (KISAO_0000560) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n", + "simulatorDetails": [ + { + "key": "methodName", + "value": "lsoda" + }, + { + "key": "parameters", + "value": null + } + ], + "skipReason": null, + "status": "SUCCEEDED" + } + ] + } + ], "skipReason": null, - "status": "FAILED" + "status": "SUCCEEDED" }, "detailed_error_log": {} }, "gillespy2": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/gillespy2' returned non-zero exit status 1", "log_yml": { - "duration": 0.189886, + "duration": 0.129637, "exception": { - "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", + "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp3eepjbrx/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmphr0xa1gw/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -122,12 +580,12 @@ "ginsim": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/ginsim' returned non-zero exit status 1", "log_yml": { - "duration": 0.218339, + "duration": 0.125017, "exception": { - "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", + "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpzgpopmtt/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` may be invalid.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp8wbu9mpc/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` may be invalid.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -137,12 +595,12 @@ "libsbmlsim": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/libsbmlsim' returned non-zero exit status 1", "log_yml": { - "duration": 0.149336, + "duration": 0.144621, "exception": { - "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", + "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpeu75f1jg/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` may be invalid.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpyuc4v55q/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` may be invalid.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -152,12 +610,12 @@ "masspy": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/masspy' returned non-zero exit status 1", "log_yml": { - "duration": 0.15721, + "duration": 0.132452, "exception": { - "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", + "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mSedmlFeatureNotSupportedWarning\u001b[0m: \u001b[33m`/tmp/tmpp2zmjef3/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mSedmlFeatureNotSupportedWarning\u001b[0m: \u001b[33m`/tmp/tmpp4dcqrwr/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -167,7 +625,7 @@ "netpyne": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/netpyne' returned non-zero exit status 1", "log_yml": { - "duration": 0.071159, + "duration": 0.055506, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -182,12 +640,12 @@ "neuron": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/neuron' returned non-zero exit status 1", "log_yml": { - "duration": 0.060616, + "duration": 0.0361, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp6scw4iqz/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmplsil1iqz/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -197,12 +655,12 @@ "opencor": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/opencor' returned non-zero exit status 1", "log_yml": { - "duration": 0.064517, + "duration": 0.065856, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp51cbr68v/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", + "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmprzokvr4x/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -212,12 +670,12 @@ "pyneuroml": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/pyneuroml' returned non-zero exit status 1", "log_yml": { - "duration": 0.055285, + "duration": 0.045912, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpibqx6tao/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmppflsl260/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -227,13 +685,242 @@ "pysces": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/pysces' returned non-zero exit status 1", "log_yml": { - "duration": 0.165074, + "duration": 1.907434, "exception": { - "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", - "type": "ValueError" + "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n :'PysMod' object has no attribute 'lambda'", + "type": "CombineArchiveExecutionError" }, - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpvzoxtq7p/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", - "sedDocuments": [], + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpiw9r8oqq/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpiw9r8oqq/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "sedDocuments": [ + { + "duration": 1.631441, + "exception": { + "message": "The SED document did not execute successfully:\n\n :'PysMod' object has no attribute 'lambda'", + "type": "SedmlExecutionError" + }, + "location": "BIOMD0000000138_url.sedml", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000138_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 44 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000138_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V1\r\nlambda is a reserved symbol, replacing with Lambda\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmpf736fa2e.xml\r\n*******************************************************************\r\n\r\nReserved symbol lambda replaced with Lambda \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"reaction_0000004\" in default compartment\r\nWriting file: /tmp/tmpsdz9cbtq.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpf736fa2e.xml\r\nout: /tmp/tmpsdz9cbtq.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmpsdz9cbtq.psc loading ..... \r\nParsing file: /tmp/tmpsdz9cbtq.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"vca\" has been initialised but does not occur in a rate equation\r\nInfo: \"vk\" has been initialised but does not occur in a rate equation\r\nInfo: \"Cm\" has been initialised but does not occur in a rate equation\r\nInfo: \"gk\" has been initialised but does not occur in a rate equation\r\nInfo: \"gcal\" has been initialised but does not occur in a rate equation\r\nInfo: \"gsk\" has been initialised but does not occur in a rate equation\r\nInfo: \"ga\" has been initialised but does not occur in a rate equation\r\nInfo: \"gf\" has been initialised but does not occur in a rate equation\r\nInfo: \"vn\" has been initialised but does not occur in a rate equation\r\nInfo: \"va\" has been initialised but does not occur in a rate equation\r\nInfo: \"vm\" has been initialised but does not occur in a rate equation\r\nInfo: \"vh\" has been initialised but does not occur in a rate equation\r\nInfo: \"vf\" has been initialised but does not occur in a rate equation\r\nInfo: \"sn\" has been initialised but does not occur in a rate equation\r\nInfo: \"sa\" has been initialised but does not occur in a rate equation\r\nInfo: \"sm\" has been initialised but does not occur in a rate equation\r\nInfo: \"sh\" has been initialised but does not occur in a rate equation\r\nInfo: \"sf\" has been initialised but does not occur in a rate equation\r\nInfo: \"taun\" has been initialised but does not occur in a rate equation\r\nInfo: \"tauh\" has been initialised but does not occur in a rate equation\r\nInfo: \"Lambda\" has been initialised but does not occur in a rate equation\r\nInfo: \"ks\" has been initialised but does not occur in a rate equation\r\nInfo: \"phik\" has been initialised but does not occur in a rate equation\r\nInfo: \"phia\" has been initialised but does not occur in a rate equation\r\nInfo: \"phih\" has been initialised but does not occur in a rate equation\r\nInfo: \"phif\" has been initialised but does not occur in a rate equation\r\nInfo: \"phical\" has been initialised but does not occur in a rate equation\r\nInfo: \"cinf\" has been initialised but does not occur in a rate equation\r\nInfo: \"isk\" has been initialised but does not occur in a rate equation\r\nInfo: \"ibk\" has been initialised but does not occur in a rate equation\r\nInfo: \"ikdr\" has been initialised but does not occur in a rate equation\r\nInfo: \"ia\" has been initialised but does not occur in a rate equation\r\nInfo: \"ik\" has been initialised but does not occur in a rate equation\r\nInfo: \"n\" has been initialised but does not occur in a rate equation\r\nInfo: \"h\" has been initialised but does not occur in a rate equation\r\nInfo: \"V\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . done.\r\nCalculating K matrix . . . . . . . no flux conservation\r\n done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nRate rule(s) detected.\r\nINFO: RateRules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 1001 points: 0.022429227828979492\r\nRateRules evaluated and added to mod.data_sim.\r\n \u001b[31mfailed - 'PysMod' object has no attribute 'lambda'\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[36mqueued\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", + "outputs": [ + { + "dataSets": [ + { + "id": "autogen_time_for_task1", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_c", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vca", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_Cm", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gcal", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gsk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ga", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vn", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_va", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vm", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vh", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sn", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sa", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sm", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sh", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_taun", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_tauh", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_lambda", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_kc", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ks", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ff", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_alpha", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phik", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phia", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phih", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phif", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phical", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_cinf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ica", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_isk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ibk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ikdr", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ia", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ik", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_n", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_h", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_V", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_cell", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_reaction_0000004", + "status": "SKIPPED" + } + ], + "duration": 0.058461, + "exception": null, + "id": "autogen_report_for_task1", + "output": "", + "skipReason": null, + "status": "SKIPPED" + }, + { + "curves": [ + { + "id": "autogen_curve_task1_c", + "status": "SKIPPED" + } + ], + "duration": 0.316446, + "exception": null, + "id": "autogen_plot_for_task1", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the X axis because the X data generators have inconsistent names.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mCurves have inconsistent x axis scales. All curves will be plotted in linear scale.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mCurves have inconsistent y axis scales. All curves will be plotted in linear scale.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "skipReason": null, + "status": "SKIPPED" + } + ], + "skipReason": null, + "status": "FAILED", + "tasks": [ + { + "algorithm": null, + "duration": 1.121393, + "exception": { + "message": "'PysMod' object has no attribute 'lambda'", + "type": "AttributeError" + }, + "id": "task1", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task1_ga__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_V__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_taun__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_reaction_0000004__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phia__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ibk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_tauh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phif__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_isk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ikdr__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_lambda__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ks__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gsk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ff__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vca__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_alpha__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ia__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_c__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_Cm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gcal__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phical__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_va__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phik__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_cinf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_n__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_h__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phih__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ik__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ica__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n", + "simulatorDetails": null, + "skipReason": null, + "status": "FAILED" + } + ] + } + ], "skipReason": null, "status": "FAILED" }, @@ -242,12 +929,12 @@ "rbapy": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/rbapy' returned non-zero exit status 1", "log_yml": { - "duration": 0.186807, + "duration": 0.118782, "exception": { - "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", + "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpifk6hn52/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` may be invalid.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpu5yiuvh2/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` may be invalid.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -260,250 +947,501 @@ "detailed_error_log": {} }, "tellurium": { - "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/tellurium' returned non-zero exit status 1", - "log_yml": { - "duration": 0.353767, - "exception": { - "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", - "type": "ValueError" - }, - "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmp4vvnu6xd/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n\r\n", - "sedDocuments": [], - "skipReason": null, - "status": "FAILED" - }, - "detailed_error_log": {} - }, - "vcell": { - "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/vcell' returned non-zero exit status 1", + "exception_message": "", "log_yml": { - "duration": 3, + "duration": 1.155725, "exception": null, - "output": "Processing BIOMD0000000138_url.sedml. Done", + "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmpx3c_bii7/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmpx3c_bii7/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n", "sedDocuments": [ { - "duration": null, - "exception": { - "message": "Cannot invoke 'org.jlibsedml.SedML.getPathForURI()' because 'this.sedml' is nullCannot invoke 'org.jlibsedml.SedML.getPathForURI()' because 'sedml' is nullFailure executing the sed document.", - "type": "RuntimeException" - }, + "duration": 0.774385, + "exception": null, "location": "BIOMD0000000138_url.sedml", - "output": "Initializing SED-ML document... done. Successful translation of SED-ML file. Building solvers and starting simulation of all tasks... Generating outputs... Generating HDF5 file...", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000138_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 44 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000138_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", "outputs": [ { - "curves": [ + "dataSets": [ { - "id": "autogen_curve_task1_c", - "status": "QUEUED" + "id": "autogen_time_for_task1", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_c", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vca", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_Cm", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_gk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_gcal", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_gsk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ga", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_gf", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vn", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_va", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vm", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vh", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vf", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_sn", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_sa", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_sm", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_sh", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_sf", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_taun", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_tauh", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_lambda", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_kc", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ks", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ff", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_alpha", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_phik", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_phia", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_phih", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_phif", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_phical", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_cinf", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ica", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_isk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ibk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ikdr", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ia", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ik", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_n", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_h", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_V", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_cell", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_reaction_0000004", + "status": "SUCCEEDED" } ], - "duration": null, + "duration": 0.194506, "exception": null, - "id": "autogen_plot1", - "output": null, + "id": "autogen_report_for_task1", + "output": "", "skipReason": null, - "status": "QUEUED" + "status": "SUCCEEDED" }, { "curves": [ { - "id": "autogen_curve_for_task1_V", - "status": "QUEUED" + "id": "autogen_curve_task1_c", + "status": "SUCCEEDED" } ], - "duration": null, + "duration": 0.299407, "exception": null, - "id": "autogen_plot2", - "output": null, + "id": "autogen_plot_for_task1", + "output": "", "skipReason": null, - "status": "QUEUED" - }, + "status": "SUCCEEDED" + } + ], + "skipReason": null, + "status": "SUCCEEDED", + "tasks": [ + { + "algorithm": "KISAO_0000019", + "duration": 0.116665, + "exception": null, + "id": "task1", + "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33m- Variable `auto_dg_for_task1_h__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_lambda__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_va__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_isk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ga__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ks__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ia__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_taun__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_tauh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gcal__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_reaction_0000004__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ikdr__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ibk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phical__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_Cm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phif__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gsk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ik__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phia__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ica__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phih__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_alpha__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phik__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vca__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_cinf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_V__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_c__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_n__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ff__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vf__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mModel `BIOMD0000000138_url` may be invalid.\r\n - The model file `/tmp/tmpx3c_bii7/./BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning:\r\n\r\n\u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n\r\n", + "simulatorDetails": [ + { + "key": "method", + "value": "simulate" + }, + { + "key": "solver", + "value": "cvode" + }, + { + "key": "relative_tolerance", + "value": 1e-06 + }, + { + "key": "absolute_tolerance", + "value": 1e-12 + }, + { + "key": "stiff", + "value": true + }, + { + "key": "maximum_bdf_order", + "value": 5 + }, + { + "key": "maximum_adams_order", + "value": 12 + }, + { + "key": "maximum_num_steps", + "value": 20000 + }, + { + "key": "maximum_time_step", + "value": 0.0 + }, + { + "key": "minimum_time_step", + "value": 0.0 + }, + { + "key": "initial_time_step", + "value": 0.0 + }, + { + "key": "multiple_steps", + "value": false + }, + { + "key": "variable_step_size", + "value": false + }, + { + "key": "max_output_rows", + "value": 100000 + } + ], + "skipReason": null, + "status": "SUCCEEDED" + } + ] + } + ], + "skipReason": null, + "status": "SUCCEEDED" + }, + "detailed_error_log": {} + }, + "vcell": { + "exception_message": "", + "log_yml": { + "duration": 10, + "exception": null, + "output": "Processing BIOMD0000000138_url.sedml. Done", + "sedDocuments": [ + { + "duration": null, + "exception": null, + "location": "BIOMD0000000138_url.sedml", + "output": "Initializing SED-ML document... done. Successful translation of SED-ML file. Building solvers and starting simulation of all tasks... Generating outputs... Generating CSV file... Done. Generating HDF5 file...", + "outputs": [ { - "curves": [], + "curves": [ + { + "id": "autogen_curve_task1_c", + "status": "SUCCEEDED" + } + ], "duration": null, "exception": null, - "id": "autogen_plot3", + "id": "autogen_plot_for_task1", "output": null, "skipReason": null, - "status": "QUEUED" + "status": "SUCCEEDED" }, { "dataSets": [ { "id": "autogen_time_for_task1", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_c", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_vca", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_vk", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_Cm", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_gk", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_gcal", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_gsk", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_ga", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_gf", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_vn", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_va", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_vm", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_vh", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_vf", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_sn", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_sa", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_sm", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_sh", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_sf", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_taun", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_tauh", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_lambda", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_kc", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_ks", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_ff", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_alpha", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_phik", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_phia", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_phih", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_phif", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_phical", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_cinf", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_ica", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_isk", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_ibk", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_ikdr", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_ia", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_ik", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_n", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_h", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_V", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_cell", - "status": "QUEUED" + "status": "SUCCEEDED" }, { "id": "autogen_task1_reaction_0000004", - "status": "QUEUED" + "status": "SUCCEEDED" } ], "duration": null, @@ -511,21 +1449,21 @@ "id": "autogen_report_for_task1", "output": null, "skipReason": null, - "status": "QUEUED" + "status": "SUCCEEDED" } ], "skipReason": null, - "status": "FAILED", + "status": "SUCCEEDED", "tasks": [ { - "algorithm": null, - "duration": null, + "algorithm": "KISAO_0000019", + "duration": 1, "exception": null, "id": "task1", - "output": null, + "output": "Initializing simulation job 0 ... done. Starting simulation... done.", "simulatorDetails": null, "skipReason": null, - "status": "QUEUED" + "status": "SUCCEEDED" } ] } @@ -533,20 +1471,17 @@ "skipReason": null, "status": "SUCCEEDED" }, - "detailed_error_log": { - "status": "FAIL", - "error_message": "Runtime Exception" - } + "detailed_error_log": {} }, "xpp": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/xpp' returned non-zero exit status 1", "log_yml": { - "duration": 0.045898, + "duration": 0.043295, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp6b2m0qxt/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpvcx37jkg/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" diff --git a/BioModels/BIOMD0000000138/tests/results_remote.json b/BioModels/BIOMD0000000138/tests/results_remote.json index 87b12930..81e88681 100644 --- a/BioModels/BIOMD0000000138/tests/results_remote.json +++ b/BioModels/BIOMD0000000138/tests/results_remote.json @@ -1,28 +1,257 @@ { "amici": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5a4ef911d5d452599d0", - "download": "https://api.biosimulations.org/results/674dc5a4ef911d5d452599d0/download", - "logs": "https://api.biosimulations.org/logs/674dc5a4ef911d5d452599d0?includeOutput=true", + "view": "https://api.biosimulations.org/runs/675999409fa297efdca4d2a4", + "download": "https://api.biosimulations.org/results/675999409fa297efdca4d2a4/download", + "logs": "https://api.biosimulations.org/logs/675999409fa297efdca4d2a4?includeOutput=true", "log_yml": { - "duration": 0.367675, + "duration": 0.971204, "exception": { - "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", - "type": "ValueError" + "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n rateRule \"lambda * (phik - n) / taun\" contains an unsupported expression: Sympify of expression 'could not parse 'lambda * (phik - n) / taun'' failed, because of exception being raised:\n TokenError: Starred arguments in lambda not supported.", + "type": "CombineArchiveExecutionError" }, "output": "", - "sedDocuments": [], + "sedDocuments": [ + { + "duration": 0.582419, + "exception": { + "message": "The SED document did not execute successfully:\n\n rateRule \"lambda * (phik - n) / taun\" contains an unsupported expression: Sympify of expression 'could not parse 'lambda * (phik - n) / taun'' failed, because of exception being raised:\n TokenError: Starred arguments in lambda not supported.", + "type": "SedmlExecutionError" + }, + "location": "BIOMD0000000138_url.sedml", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000138_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 44 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000138_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[31mfailed\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[36mqueued\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", + "outputs": [ + { + "dataSets": [ + { + "id": "autogen_time_for_task1", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_c", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vca", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_Cm", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gcal", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gsk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ga", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vn", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_va", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vm", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vh", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sn", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sa", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sm", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sh", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_taun", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_tauh", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_lambda", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_kc", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ks", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ff", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_alpha", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phik", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phia", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phih", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phif", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phical", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_cinf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ica", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_isk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ibk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ikdr", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ia", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ik", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_n", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_h", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_V", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_cell", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_reaction_0000004", + "status": "SKIPPED" + } + ], + "duration": 0.06155, + "exception": null, + "id": "autogen_report_for_task1", + "output": "", + "skipReason": null, + "status": "SKIPPED" + }, + { + "curves": [ + { + "id": "autogen_curve_task1_c", + "status": "SKIPPED" + } + ], + "duration": 0.286159, + "exception": null, + "id": "autogen_plot_for_task1", + "output": "", + "skipReason": null, + "status": "SKIPPED" + } + ], + "skipReason": null, + "status": "FAILED", + "tasks": [ + { + "algorithm": null, + "duration": 0.101771, + "exception": { + "message": "rateRule \"lambda * (phik - n) / taun\" contains an unsupported expression: Sympify of expression 'could not parse 'lambda * (phik - n) / taun'' failed, because of exception being raised:\nTokenError: Starred arguments in lambda not supported.", + "type": "SBMLException" + }, + "id": "task1", + "output": "", + "simulatorDetails": null, + "skipReason": null, + "status": "FAILED" + } + ] + } + ], "skipReason": null, "status": "FAILED" } }, "brian2": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5a6261553b9bc253da5", - "download": "https://api.biosimulations.org/results/674dc5a6261553b9bc253da5/download", - "logs": "https://api.biosimulations.org/logs/674dc5a6261553b9bc253da5?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599942c3054f763d585837", + "download": "https://api.biosimulations.org/results/67599942c3054f763d585837/download", + "logs": "https://api.biosimulations.org/logs/67599942c3054f763d585837?includeOutput=true", "log_yml": { - "duration": 0.060828, + "duration": 0.051573, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -35,13 +264,13 @@ }, "bionetgen": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5a8ef911d5d452599d3", - "download": "https://api.biosimulations.org/results/674dc5a8ef911d5d452599d3/download", - "logs": "https://api.biosimulations.org/logs/674dc5a8ef911d5d452599d3?includeOutput=true", + "view": "https://api.biosimulations.org/runs/675999449fa297efdca4d2a7", + "download": "https://api.biosimulations.org/results/675999449fa297efdca4d2a7/download", + "logs": "https://api.biosimulations.org/logs/675999449fa297efdca4d2a7?includeOutput=true", "log_yml": { - "duration": 0.225267, + "duration": 0.180789, "exception": { - "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", + "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, "output": "", @@ -52,13 +281,13 @@ }, "boolnet": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5aaef911d5d452599d6", - "download": "https://api.biosimulations.org/results/674dc5aaef911d5d452599d6/download", - "logs": "https://api.biosimulations.org/logs/674dc5aaef911d5d452599d6?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599946c3054f763d58583c", + "download": "https://api.biosimulations.org/results/67599946c3054f763d58583c/download", + "logs": "https://api.biosimulations.org/logs/67599946c3054f763d58583c?includeOutput=true", "log_yml": { - "duration": 0.221115, + "duration": 0.189244, "exception": { - "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", + "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, "output": "", @@ -69,13 +298,13 @@ }, "cbmpy": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5abef911d5d452599d9", - "download": "https://api.biosimulations.org/results/674dc5abef911d5d452599d9/download", - "logs": "https://api.biosimulations.org/logs/674dc5abef911d5d452599d9?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599947707aa64104620c8f", + "download": "https://api.biosimulations.org/results/67599947707aa64104620c8f/download", + "logs": "https://api.biosimulations.org/logs/67599947707aa64104620c8f?includeOutput=true", "log_yml": { - "duration": 0.391473, + "duration": 0.288107, "exception": { - "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", + "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, "output": "\r\nINFO: No xlwt module available, Excel spreadsheet creation disabled\r\n\r\n\r\n\r\nNo module named 'cplex'\r\n\r\n\r\n\r\nCPLEX not available\r\n\r\n*****\r\nUsing GLPK\r\n*****\r\n\r\n\r\nINFO: No xlrd module available, Excel spreadsheet reading disabled\r\n\r\nCBMPy environment\r\n******************\r\nRevision: r689\r\n\r\n\r\n***********************************************************************\r\n* Welcome to CBMPy (0.7.25) - PySCeS Constraint Based Modelling *\r\n* http://cbmpy.sourceforge.net *\r\n* Copyright(C) Brett G. Olivier 2014 - 2019 *\r\n* Dept. of Systems Bioinformatics *\r\n* Vrije Universiteit Amsterdam, Amsterdam, The Netherlands *\r\n* CBMPy is developed as part of the BeBasic MetaToolKit Project *\r\n* Distributed under the GNU GPL v 3.0 licence, see *\r\n* LICENCE (supplied with this release) for details *\r\n***********************************************************************\r\n\r\n", @@ -86,13 +315,13 @@ }, "cobrapy": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5ae10bb4455d618755b", - "download": "https://api.biosimulations.org/results/674dc5ae10bb4455d618755b/download", - "logs": "https://api.biosimulations.org/logs/674dc5ae10bb4455d618755b?includeOutput=true", + "view": "https://api.biosimulations.org/runs/675999499fa297efdca4d2ae", + "download": "https://api.biosimulations.org/results/675999499fa297efdca4d2ae/download", + "logs": "https://api.biosimulations.org/logs/675999499fa297efdca4d2ae?includeOutput=true", "log_yml": { - "duration": 0.205544, + "duration": 0.206998, "exception": { - "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", + "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, "output": "", @@ -103,135 +332,593 @@ }, "copasi": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5b010bb4455d6187562", - "download": "https://api.biosimulations.org/results/674dc5b010bb4455d6187562/download", - "logs": "https://api.biosimulations.org/logs/674dc5b010bb4455d6187562?includeOutput=true", - "log_yml": { - "duration": 0.241913, - "exception": { - "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", - "type": "ValueError" - }, - "output": "", - "sedDocuments": [], - "skipReason": null, - "status": "FAILED" - } - }, - "gillespy2": { - "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5b2ef911d5d452599de", - "download": "https://api.biosimulations.org/results/674dc5b2ef911d5d452599de/download", - "logs": "https://api.biosimulations.org/logs/674dc5b2ef911d5d452599de?includeOutput=true", - "log_yml": { - "duration": 0.219933, - "exception": { - "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", - "type": "ValueError" - }, - "output": "", - "sedDocuments": [], - "skipReason": null, - "status": "FAILED" - } - }, - "ginsim": { - "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5b4ef911d5d452599e3", - "download": "https://api.biosimulations.org/results/674dc5b4ef911d5d452599e3/download", - "logs": "https://api.biosimulations.org/logs/674dc5b4ef911d5d452599e3?includeOutput=true", - "log_yml": { - "duration": 0.2174, - "exception": { - "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", - "type": "ValueError" - }, - "output": "", - "sedDocuments": [], - "skipReason": null, - "status": "FAILED" - } - }, - "libsbmlsim": { - "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5b6ef911d5d452599e6", - "download": "https://api.biosimulations.org/results/674dc5b6ef911d5d452599e6/download", - "logs": "https://api.biosimulations.org/logs/674dc5b6ef911d5d452599e6?includeOutput=true", - "log_yml": { - "duration": 0.214185, - "exception": { - "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", - "type": "ValueError" - }, - "output": "", - "sedDocuments": [], - "skipReason": null, - "status": "FAILED" - } - }, - "masspy": { - "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5b9261553b9bc253db3", - "download": "https://api.biosimulations.org/results/674dc5b9261553b9bc253db3/download", - "logs": "https://api.biosimulations.org/logs/674dc5b9261553b9bc253db3?includeOutput=true", - "log_yml": { - "duration": 0.434822, - "exception": { - "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", - "type": "ValueError" - }, - "output": "", - "sedDocuments": [], - "skipReason": null, - "status": "FAILED" - } - }, - "netpyne": { - "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5bb261553b9bc253db8", - "download": "https://api.biosimulations.org/results/674dc5bb261553b9bc253db8/download", - "logs": "https://api.biosimulations.org/logs/674dc5bb261553b9bc253db8?includeOutput=true", - "log_yml": { - "duration": 0.057637, - "exception": { - "message": "No module named 'libsbml'", - "type": "ModuleNotFoundError" - }, - "output": "", - "sedDocuments": [], - "skipReason": null, - "status": "FAILED" - } - }, - "neuron": { - "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5bcef911d5d452599f3", - "download": "https://api.biosimulations.org/results/674dc5bcef911d5d452599f3/download", - "logs": "https://api.biosimulations.org/logs/674dc5bcef911d5d452599f3?includeOutput=true", + "view": "https://api.biosimulations.org/runs/6759994cc3054f763d58583f", + "download": "https://api.biosimulations.org/results/6759994cc3054f763d58583f/download", + "logs": "https://api.biosimulations.org/logs/6759994cc3054f763d58583f?includeOutput=true", "log_yml": { - "duration": 0.053141, - "exception": { - "message": "No module named 'libsbml'", - "type": "ModuleNotFoundError" - }, + "duration": 1.402967, + "exception": null, "output": "", - "sedDocuments": [], - "skipReason": null, - "status": "FAILED" - } - }, - "opencor": { - "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5beef911d5d452599f6", - "download": "https://api.biosimulations.org/results/674dc5beef911d5d452599f6/download", - "logs": "https://api.biosimulations.org/logs/674dc5beef911d5d452599f6?includeOutput=true", - "log_yml": { - "duration": 0.036307, - "exception": { + "sedDocuments": [ + { + "duration": 1.078911, + "exception": null, + "location": "BIOMD0000000138_url.sedml", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000138_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 44 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000138_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...woohoo!\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", + "outputs": [ + { + "dataSets": [ + { + "id": "autogen_time_for_task1", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_c", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vca", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_Cm", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_gk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_gcal", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_gsk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ga", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_gf", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vn", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_va", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vm", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vh", + "status": "SUCCEEDED" + }, + { + "id": 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"autogen_task1_phif", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_phical", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_cinf", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ica", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_isk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ibk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ikdr", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ia", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ik", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_n", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_h", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_V", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_cell", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_reaction_0000004", + "status": "SUCCEEDED" + } + ], + "duration": 0.301759, + "exception": null, + "id": "autogen_report_for_task1", + "output": "", + "skipReason": null, + "status": "SUCCEEDED" + }, + { + "curves": [ + { + "id": "autogen_curve_task1_c", + "status": "SUCCEEDED" + } + ], + "duration": 0.44474, + "exception": null, + "id": "autogen_plot_for_task1", + "output": "", + "skipReason": null, + "status": "SUCCEEDED" + } + ], + "skipReason": null, + "status": "SUCCEEDED", + "tasks": [ + { + "algorithm": "KISAO_0000560", + "duration": 0.193466, + "exception": null, + "id": "task1", + "output": "", + "simulatorDetails": [ + { + "key": "methodName", + "value": "lsoda" + }, + { + "key": "parameters", + "value": null + } + ], + "skipReason": null, + "status": "SUCCEEDED" + } + ] + } + ], + "skipReason": null, + "status": "SUCCEEDED" + } + }, + "gillespy2": { + "response": 201, + "view": "https://api.biosimulations.org/runs/6759994e9fa297efdca4d2b6", + "download": "https://api.biosimulations.org/results/6759994e9fa297efdca4d2b6/download", + "logs": "https://api.biosimulations.org/logs/6759994e9fa297efdca4d2b6?includeOutput=true", + "log_yml": { + "duration": 0.196542, + "exception": { + "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", + "type": "ValueError" + }, + "output": "", + "sedDocuments": [], + "skipReason": null, + "status": "FAILED" + } + }, + "ginsim": { + "response": 201, + "view": "https://api.biosimulations.org/runs/6759994fc3054f763d585849", + "download": "https://api.biosimulations.org/results/6759994fc3054f763d585849/download", + "logs": "https://api.biosimulations.org/logs/6759994fc3054f763d585849?includeOutput=true", + "log_yml": { + "duration": 0.181475, + "exception": { + "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", + "type": "ValueError" + }, + "output": "", + "sedDocuments": [], + "skipReason": null, + "status": "FAILED" + } + }, + "libsbmlsim": { + "response": 201, + "view": "https://api.biosimulations.org/runs/67599951c3054f763d58584c", + "download": "https://api.biosimulations.org/results/67599951c3054f763d58584c/download", + "logs": "https://api.biosimulations.org/logs/67599951c3054f763d58584c?includeOutput=true", + "log_yml": { + "duration": 0.1971, + "exception": { + "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", + "type": "ValueError" + }, + "output": "", + "sedDocuments": [], + "skipReason": null, + "status": "FAILED" + } + }, + "masspy": { + "response": 201, + "view": "https://api.biosimulations.org/runs/675999539fa297efdca4d2c4", + "download": "https://api.biosimulations.org/results/675999539fa297efdca4d2c4/download", + "logs": "https://api.biosimulations.org/logs/675999539fa297efdca4d2c4?includeOutput=true", + "log_yml": { + "duration": 1.160059, + "exception": { + "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n Something went wrong reading the SBML model. Most likely the SBML model is not valid. Please check that your model is valid using the `mass.io.sbml.validate_sbml_model` function or via the online validator at http://sbml.org/validator .\n \t`(model, errors) = validate_sbml_model(filename)`\n If the model is valid and cannot be read please open an issue at https://github.com/SBRG/masspy/issues .", + "type": "CombineArchiveExecutionError" + }, + "output": "", + "sedDocuments": [ + { + "duration": 0.641092, + "exception": { + "message": "The SED document did not execute successfully:\n\n Something went wrong reading the SBML model. Most likely the SBML model is not valid. Please check that your model is valid using the `mass.io.sbml.validate_sbml_model` function or via the online validator at http://sbml.org/validator .\n \t`(model, errors) = validate_sbml_model(filename)`\n If the model is valid and cannot be read please open an issue at https://github.com/SBRG/masspy/issues .", + "type": "SedmlExecutionError" + }, + "location": "BIOMD0000000138_url.sedml", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000138_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 44 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000138_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[31mfailed\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[36mqueued\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", + "outputs": [ + { + "dataSets": [ + { + "id": "autogen_time_for_task1", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_c", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vca", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_Cm", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gcal", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gsk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ga", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vn", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_va", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vm", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vh", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sn", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sa", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sm", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sh", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_taun", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_tauh", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_lambda", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_kc", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ks", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ff", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_alpha", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phik", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phia", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phih", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phif", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phical", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_cinf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ica", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_isk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ibk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ikdr", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ia", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ik", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_n", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_h", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_V", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_cell", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_reaction_0000004", + "status": "SKIPPED" + } + ], + "duration": 0.056229, + "exception": null, + "id": "autogen_report_for_task1", + "output": "", + "skipReason": null, + "status": "SKIPPED" + }, + { + "curves": [ + { + "id": "autogen_curve_task1_c", + "status": "SKIPPED" + } + ], + "duration": 0.339426, + "exception": null, + "id": "autogen_plot_for_task1", + "output": "", + "skipReason": null, + "status": "SKIPPED" + } + ], + "skipReason": null, + "status": "FAILED", + "tasks": [ + { + "algorithm": null, + "duration": 0.086716, + "exception": { + "message": "Something went wrong reading the SBML model. Most likely the SBML model is not valid. Please check that your model is valid using the `mass.io.sbml.validate_sbml_model` function or via the online validator at http://sbml.org/validator .\n\t`(model, errors) = validate_sbml_model(filename)`\nIf the model is valid and cannot be read please open an issue at https://github.com/SBRG/masspy/issues .", + "type": "MassSBMLError" + }, + "id": "task1", + "output": "\u001b[93mWARNING:\u001b[0m \u001b[93mModel does not contain SBML fbc package\u001b[0m\r\n\u001b[93mWARNING:\u001b[0m \u001b[93mModel does not contain SBML groups package\u001b[0m\r\n\u001b[93mWARNING:\u001b[0m \u001b[93mNo key provided for note in Model 'model_0000001'. The note will be added to the notes attribute with key 'NOTES'.\u001b[0m\r\n\u001b[93mWARNING:\u001b[0m \u001b[93mNo key provided for note in Model 'model_0000001'. The note will be added to the notes attribute with key 'NOTES'.\u001b[0m\r\n", + "simulatorDetails": null, + "skipReason": null, + "status": "FAILED" + } + ] + } + ], + "skipReason": null, + "status": "FAILED" + } + }, + "netpyne": { + "response": 201, + "view": "https://api.biosimulations.org/runs/67599955c3054f763d585861", + "download": "https://api.biosimulations.org/results/67599955c3054f763d585861/download", + "logs": "https://api.biosimulations.org/logs/67599955c3054f763d585861?includeOutput=true", + "log_yml": { + "duration": 0.052541, + "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpsxy4ki5b/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", + "output": "", + "sedDocuments": [], + "skipReason": null, + "status": "FAILED" + } + }, + "neuron": { + "response": 201, + "view": "https://api.biosimulations.org/runs/67599956707aa64104620cab", + "download": "https://api.biosimulations.org/results/67599956707aa64104620cab/download", + "logs": "https://api.biosimulations.org/logs/67599956707aa64104620cab?includeOutput=true", + "log_yml": { + "duration": 0.048951, + "exception": { + "message": "No module named 'libsbml'", + "type": "ModuleNotFoundError" + }, + "output": "", + "sedDocuments": [], + "skipReason": null, + "status": "FAILED" + } + }, + "opencor": { + "response": 201, + "view": "https://api.biosimulations.org/runs/67599958c3054f763d585873", + "download": "https://api.biosimulations.org/results/67599958c3054f763d585873/download", + "logs": "https://api.biosimulations.org/logs/67599958c3054f763d585873?includeOutput=true", + "log_yml": { + "duration": 0.029932, + "exception": { + "message": "No module named 'libsbml'", + "type": "ModuleNotFoundError" + }, + "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpmyqps9wi/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -239,11 +926,11 @@ }, "pyneuroml": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5c0ef911d5d452599fd", - "download": "https://api.biosimulations.org/results/674dc5c0ef911d5d452599fd/download", - "logs": "https://api.biosimulations.org/logs/674dc5c0ef911d5d452599fd?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599959c3054f763d585886", + "download": "https://api.biosimulations.org/results/67599959c3054f763d585886/download", + "logs": "https://api.biosimulations.org/logs/67599959c3054f763d585886?includeOutput=true", "log_yml": { - "duration": 0.050251, + "duration": 0.048959, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -256,30 +943,259 @@ }, "pysces": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5c1261553b9bc253dcc", - "download": "https://api.biosimulations.org/results/674dc5c1261553b9bc253dcc/download", - "logs": "https://api.biosimulations.org/logs/674dc5c1261553b9bc253dcc?includeOutput=true", + "view": "https://api.biosimulations.org/runs/6759995bc3054f763d58588c", + "download": "https://api.biosimulations.org/results/6759995bc3054f763d58588c/download", + "logs": "https://api.biosimulations.org/logs/6759995bc3054f763d58588c?includeOutput=true", "log_yml": { - "duration": 0.202896, + "duration": 2.135361, "exception": { - "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", - "type": "ValueError" + "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n :'PysMod' object has no attribute 'lambda'", + "type": "CombineArchiveExecutionError" }, "output": "libtk8.6.so: cannot open shared object file: No such file or directory\r\n\r\nPySCeS defaults to matplotlib's TKagg backend if not specified in the user configuration file, set \"matplotlib_backend = \" \r\nMatplotlib interface loaded (pysces.plt.m)\r\nPitcon routines available\r\nNLEQ2 routines available\r\nSBML support available\r\nYou are using NumPy (2.1.2) with SciPy (1.14.1)\r\nAssimulo CVode available\r\nRateChar is available\r\nParallel scanner is available\r\n\r\nPySCeS environment\r\n******************\r\npysces.model_dir = /home/FCAM/crbmapi/Pysces/psc\r\npysces.output_dir = /home/FCAM/crbmapi/Pysces\r\n\r\n\r\n***********************************************************************\r\n* Welcome to PySCeS (1.2.2) - Python Simulator for Cellular Systems *\r\n* http://pysces.sourceforge.net *\r\n* Copyright(C) B.G. Olivier, J.M. Rohwer, J.-H.S. Hofmeyr, 2004-2024 *\r\n* Triple-J Group for Molecular Cell Physiology *\r\n* Stellenbosch University, ZA and VU University Amsterdam, NL *\r\n* PySCeS is distributed under the PySCeS (BSD style) licence, see *\r\n* LICENCE.txt (supplied with this release) for details *\r\n* Please cite PySCeS with: doi:10.1093/bioinformatics/bti046 *\r\n***********************************************************************\r\n", - "sedDocuments": [], + "sedDocuments": [ + { + "duration": 1.817634, + "exception": { + "message": "The SED document did not execute successfully:\n\n :'PysMod' object has no attribute 'lambda'", + "type": "SedmlExecutionError" + }, + "location": "BIOMD0000000138_url.sedml", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000138_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 44 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000138_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V1\r\nlambda is a reserved symbol, replacing with Lambda\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmphf9ek76_.xml\r\n*******************************************************************\r\n\r\nReserved symbol lambda replaced with Lambda \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"reaction_0000004\" in default compartment\r\nWriting file: /tmp/tmpj7zz980a.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmphf9ek76_.xml\r\nout: /tmp/tmpj7zz980a.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmpj7zz980a.psc loading ..... \r\nParsing file: /tmp/tmpj7zz980a.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"vca\" has been initialised but does not occur in a rate equation\r\nInfo: \"vk\" has been initialised but does not occur in a rate equation\r\nInfo: \"Cm\" has been initialised but does not occur in a rate equation\r\nInfo: \"gk\" has been initialised but does not occur in a rate equation\r\nInfo: \"gcal\" has been initialised but does not occur in a rate equation\r\nInfo: \"gsk\" has been initialised but does not occur in a rate equation\r\nInfo: \"ga\" has been initialised but does not occur in a rate equation\r\nInfo: \"gf\" has been initialised but does not occur in a rate equation\r\nInfo: \"vn\" has been initialised but does not occur in a rate equation\r\nInfo: \"va\" has been initialised but does not occur in a rate equation\r\nInfo: \"vm\" has been initialised but does not occur in a rate equation\r\nInfo: \"vh\" has been initialised but does not occur in a rate equation\r\nInfo: \"vf\" has been initialised but does not occur in a rate equation\r\nInfo: \"sn\" has been initialised but does not occur in a rate equation\r\nInfo: \"sa\" has been initialised but does not occur in a rate equation\r\nInfo: \"sm\" has been initialised but does not occur in a rate equation\r\nInfo: \"sh\" has been initialised but does not occur in a rate equation\r\nInfo: \"sf\" has been initialised but does not occur in a rate equation\r\nInfo: \"taun\" has been initialised but does not occur in a rate equation\r\nInfo: \"tauh\" has been initialised but does not occur in a rate equation\r\nInfo: \"Lambda\" has been initialised but does not occur in a rate equation\r\nInfo: \"ks\" has been initialised but does not occur in a rate equation\r\nInfo: \"phik\" has been initialised but does not occur in a rate equation\r\nInfo: \"phia\" has been initialised but does not occur in a rate equation\r\nInfo: \"phih\" has been initialised but does not occur in a rate equation\r\nInfo: \"phif\" has been initialised but does not occur in a rate equation\r\nInfo: \"phical\" has been initialised but does not occur in a rate equation\r\nInfo: \"cinf\" has been initialised but does not occur in a rate equation\r\nInfo: \"isk\" has been initialised but does not occur in a rate equation\r\nInfo: \"ibk\" has been initialised but does not occur in a rate equation\r\nInfo: \"ikdr\" has been initialised but does not occur in a rate equation\r\nInfo: \"ia\" has been initialised but does not occur in a rate equation\r\nInfo: \"ik\" has been initialised but does not occur in a rate equation\r\nInfo: \"n\" has been initialised but does not occur in a rate equation\r\nInfo: \"h\" has been initialised but does not occur in a rate equation\r\nInfo: \"V\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . done.\r\nCalculating K matrix . . . . . . . no flux conservation\r\n done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nRate rule(s) detected.\r\nINFO: RateRules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 1001 points: 0.04923725128173828\r\nRateRules evaluated and added to mod.data_sim.\r\n \u001b[31mfailed - 'PysMod' object has no attribute 'lambda'\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[36mqueued\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", + "outputs": [ + { + "dataSets": [ + { + "id": "autogen_time_for_task1", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_c", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vca", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_Cm", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gcal", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gsk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ga", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_gf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vn", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_va", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vm", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vh", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_vf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sn", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sa", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sm", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sh", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_sf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_taun", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_tauh", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_lambda", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_kc", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ks", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ff", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_alpha", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phik", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phia", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phih", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phif", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_phical", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_cinf", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ica", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_isk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ibk", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ikdr", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ia", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_ik", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_n", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_h", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_V", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_cell", + "status": "SKIPPED" + }, + { + "id": "autogen_task1_reaction_0000004", + "status": "SKIPPED" + } + ], + "duration": 0.054186, + "exception": null, + "id": "autogen_report_for_task1", + "output": "", + "skipReason": null, + "status": "SKIPPED" + }, + { + "curves": [ + { + "id": "autogen_curve_task1_c", + "status": "SKIPPED" + } + ], + "duration": 0.432871, + "exception": null, + "id": "autogen_plot_for_task1", + "output": "", + "skipReason": null, + "status": "SKIPPED" + } + ], + "skipReason": null, + "status": "FAILED", + "tasks": [ + { + "algorithm": null, + "duration": 1.195812, + "exception": { + "message": "'PysMod' object has no attribute 'lambda'", + "type": "AttributeError" + }, + "id": "task1", + "output": "", + "simulatorDetails": null, + "skipReason": null, + "status": "FAILED" + } + ] + } + ], "skipReason": null, "status": "FAILED" } }, "rbapy": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5c3ef911d5d45259a11", - "download": "https://api.biosimulations.org/results/674dc5c3ef911d5d45259a11/download", - "logs": "https://api.biosimulations.org/logs/674dc5c3ef911d5d45259a11?includeOutput=true", + "view": "https://api.biosimulations.org/runs/6759995d9fa297efdca4d2f7", + "download": "https://api.biosimulations.org/results/6759995d9fa297efdca4d2f7/download", + "logs": "https://api.biosimulations.org/logs/6759995d9fa297efdca4d2f7?includeOutput=true", "log_yml": { - "duration": 0.188687, + "duration": 0.191285, "exception": { - "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", + "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, "output": "", @@ -290,11 +1206,11 @@ }, "smoldyn": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5c5ef911d5d45259a27", - "download": "https://api.biosimulations.org/results/674dc5c5ef911d5d45259a27/download", - "logs": "https://api.biosimulations.org/logs/674dc5c5ef911d5d45259a27?includeOutput=true", + "view": "https://api.biosimulations.org/runs/6759995f707aa64104620cd9", + "download": "https://api.biosimulations.org/results/6759995f707aa64104620cd9/download", + "logs": "https://api.biosimulations.org/logs/6759995f707aa64104620cd9?includeOutput=true", "log_yml": { - "duration": 0.047552, + "duration": 0.048917, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -307,254 +1223,505 @@ }, "tellurium": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5c710bb4455d6187595", - "download": "https://api.biosimulations.org/results/674dc5c710bb4455d6187595/download", - "logs": "https://api.biosimulations.org/logs/674dc5c710bb4455d6187595?includeOutput=true", - "log_yml": { - "duration": 0.304898, - "exception": { - "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Output `autogen_plot3` is invalid.\n - Plot must have at least one curve.", - "type": "ValueError" - }, - "output": "", - "sedDocuments": [], - "skipReason": null, - "status": "FAILED" - } - }, - "vcell": { - "response": 201, - "view": "https://api.biosimulations.org/runs/674dc5ca10bb4455d618759a", - "download": "https://api.biosimulations.org/results/674dc5ca10bb4455d618759a/download", - "logs": "https://api.biosimulations.org/logs/674dc5ca10bb4455d618759a?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599961707aa64104620ce4", + "download": "https://api.biosimulations.org/results/67599961707aa64104620ce4/download", + "logs": "https://api.biosimulations.org/logs/67599961707aa64104620ce4?includeOutput=true", "log_yml": { - "duration": 3, + "duration": 1.480166, "exception": null, - "output": "Processing BIOMD0000000138_url.sedml. Done", + "output": "", "sedDocuments": [ { - "duration": null, - "exception": { - "message": "Cannot invoke 'org.jlibsedml.SedML.getPathForURI()' because 'this.sedml' is nullCannot invoke 'org.jlibsedml.SedML.getPathForURI()' because 'sedml' is nullFailure executing the sed document.", - "type": "RuntimeException" - }, + "duration": 1.048799, + "exception": null, "location": "BIOMD0000000138_url.sedml", - "output": "Initializing SED-ML document... done. Successful translation of SED-ML file. Building solvers and starting simulation of all tasks... Generating outputs... Generating HDF5 file...", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000138_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 44 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000138_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", "outputs": [ { - "curves": [ + "dataSets": [ { - "id": "autogen_curve_task1_c", - "status": "QUEUED" + "id": "autogen_time_for_task1", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_c", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vca", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_Cm", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_gk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_gcal", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_gsk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ga", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_gf", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vn", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_va", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vm", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vh", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_vf", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_sn", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_sa", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_sm", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_sh", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_sf", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_taun", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_tauh", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_lambda", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_kc", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ks", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ff", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_alpha", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_phik", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_phia", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_phih", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_phif", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_phical", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_cinf", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ica", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_isk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ibk", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ikdr", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ia", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_ik", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_n", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_h", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_V", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_cell", + "status": "SUCCEEDED" + }, + { + "id": "autogen_task1_reaction_0000004", + "status": "SUCCEEDED" } ], - 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a/BioModels/BIOMD0000000724/tests/d1_plots_remote/masspy_plot_8_task2.pdf b/BioModels/BIOMD0000000724/tests/d1_plots_remote/masspy_plot_8_task2.pdf index 7e4c53761e48162dd1220c88350d95a9b1c77541..2463ac1e988c408b44458632cbbf771764793909 100644 GIT binary patch delta 21 ccmX@4cSvu;9uW>hLjwy_Gb5ADM?~tF0985%4*&oF delta 21 ccmX@4cSvu;9uW=$BLhog3uDX8M?~tF099rO761SM diff --git a/BioModels/BIOMD0000000724/tests/d1_plots_remote/masspy_plot_9_task2.pdf b/BioModels/BIOMD0000000724/tests/d1_plots_remote/masspy_plot_9_task2.pdf index 7e4c53761e48162dd1220c88350d95a9b1c77541..2463ac1e988c408b44458632cbbf771764793909 100644 GIT binary patch delta 21 ccmX@4cSvu;9uW>hLjwy_Gb5ADM?~tF0985%4*&oF delta 21 ccmX@4cSvu;9uW=$BLhog3uDX8M?~tF099rO761SM diff --git a/BioModels/BIOMD0000000724/tests/d1_plots_remote/pysces_plot_10_task2.pdf b/BioModels/BIOMD0000000724/tests/d1_plots_remote/pysces_plot_10_task2.pdf index 10cf8d19dbbe6c59f01e17ab3ab4fa55f7c8341c..aba44e0b33460661afade836e012b5b9abaf5280 100644 GIT binary patch delta 21 ccmX>Xa4ukjh$@Gnp@D^|nW@EQ8C4@@08h>Z`2YX_ delta 21 ccmX>Xa4ukjh$@GHk%6VLrJ=!Q8C4@@08fzx?*IS* diff --git a/BioModels/BIOMD0000000724/tests/d1_plots_remote/pysces_plot_6_task2.pdf b/BioModels/BIOMD0000000724/tests/d1_plots_remote/pysces_plot_6_task2.pdf index d3c4da6ff9d3789ca0a0492a9a6d173f15687c0b..4c162460a0c35b7d76ad808b47ce78503e5ffc03 100644 GIT binary patch delta 21 ccmeyB^($*bvLT0|p@D^|nW_2aY(st)0AWK17ytkO delta 21 ccmeyB^($*bvLT0ok%6VLrGe$*gjs=IIp@D^|nW_2a5({${09dC6-~a#s delta 21 ccmZ2oxw>*gjs=H-k%6VLrGe$<5({${09c;}-v9sr diff --git a/BioModels/BIOMD0000000724/tests/d1_plots_remote/pysces_plot_9_task2.pdf b/BioModels/BIOMD0000000724/tests/d1_plots_remote/pysces_plot_9_task2.pdf index bba148c1a07f232dfc071b89f5191ca6d9a1cf21..65c9730962796df4d44cbf59f8d755732a74835d 100644 GIT binary patch delta 21 ccmaFi|H6O6Ar%foLjwy_GgFJrr&Q#a0bv#gaR2}S delta 21 ccmaFi|H6O6Ar%e-BLhogO9RWzr&Q#a0bvLSZvX%Q diff --git a/BioModels/BIOMD0000000724/tests/d1_plots_remote/tellurium_plot_10_task2.pdf b/BioModels/BIOMD0000000724/tests/d1_plots_remote/tellurium_plot_10_task2.pdf index 51246144311de665e36d76b7ab80a1caac58faab..5d77f0c1269c9b35b9881055476a17525f790bed 100644 GIT binary patch delta 21 ccmaFp_0VgBx)O(>p@D^|nW@=keI+Ai08<BLhogO9P9|YxVe909&~S4gdfE diff --git a/BioModels/BIOMD0000000724/tests/d1_plots_remote/tellurium_plot_8_task2.pdf b/BioModels/BIOMD0000000724/tests/d1_plots_remote/tellurium_plot_8_task2.pdf index ca65488fe515f87ae784f20b6bd6d68f0498538b..e9f01cf91d83c131961e4a6dfbb679594297522c 100644 GIT binary patch delta 21 ccmexW@~dQnuo;J;p@D^|nW@=kX|s4109|ti07>`-kpKVy delta 21 ccmdnuwZ&@#pAv_Gk%6VLrGdp}F(o->07>u#kN^Mx diff --git a/BioModels/BIOMD0000000724/tests/d1_plots_remote/vcell_plot_10_task2.pdf b/BioModels/BIOMD0000000724/tests/d1_plots_remote/vcell_plot_10_task2.pdf index dbaf8e19e46bea3ed305c0ce4fc1ee128d4cd81f..9097562be5fb4fd48f21d8dfe0596ee23dd2c602 100644 GIT binary patch delta 21 ccmX@>eb#%!WF-zmLjwy_a|4sjvz3gP0a$AW-2eap delta 21 ccmX@>eb#%!WF-y*BLhogOGER`vz3gP0a%L$;s5{u diff --git a/BioModels/BIOMD0000000724/tests/d1_plots_remote/vcell_plot_6_task2.pdf b/BioModels/BIOMD0000000724/tests/d1_plots_remote/vcell_plot_6_task2.pdf index b036e609229f3ee3ed5cacc2c4aca854d46efd08..fa3d287ed6e2c21dd5a558292af1b7fb97831940 100644 GIT binary patch delta 21 ccmZojYe?JhQjf#X(7?jf+`we>M?HQP09UXF8vpAMICIhttps://docs.biosimulators.org/Biosimulators_AMICI/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with AMICI.

SED-ML and SBML are compatible with AMICI.
|
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.

target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element

ERROR TYPE:
CombineArchiveExecutionError
|
❌ FAILERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.

target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element

ERROR TYPE:
CombineArchiveExecutionError
| plot | plot | -|
BioNetGenhttps://docs.biosimulators.org/Biosimulators_BioNetGen/
|
⚠ XFAILEXPECTED FAIL

Only BNGL, SED-ML are compatible with BioNetGen.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
BoolNethttps://docs.biosimulators.org/Biosimulators_BoolNet/
|
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with BoolNet.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
Brian 2https://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with Brian 2.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
CBMPyhttps://docs.biosimulators.org/Biosimulators_CBMPy/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with CBMPy.

SED-ML and SBML are compatible with CBMPy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
COBRApyhttps://docs.biosimulators.org/Biosimulators_COBRApy/
Only allows steady state simulations
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COBRApy.

SED-ML and SBML are compatible with COBRApy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
COPASIhttps://docs.biosimulators.org/Biosimulators_COPASI/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COPASI.

SED-ML and SBML are compatible with COPASI.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | -|
GillesPy2https://docs.biosimulators.org/Biosimulators_GillesPy2/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with GillesPy2.

SED-ML and SBML are compatible with GillesPy2.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
GINsimhttps://docs.biosimulators.org/Biosimulators_GINsim/
|
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with GINsim.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
LibSBMLSimhttps://docs.biosimulators.org/Biosimulators_LibSBMLSim/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with LibSBMLSim.

SED-ML and SBML are compatible with LibSBMLSim.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
MASSpyhttps://docs.biosimulators.org/Biosimulators_MASSpy/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with MASSpy.

SED-ML and SBML are compatible with MASSpy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Could not load MassModel '_30356330_Theinmozhi_PDL1_TCR_regulation'

target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] cannot be changed by XML manipulation, as the target is not an attribute of a model element

ERROR TYPE:
CombineArchiveExecutionError
|
❌ FAILERROR MESSAGE:
`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| plot | | -|
NetPyNEhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NetPyNE.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
NEURONhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NEURON.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
OpenCORhttps://docs.biosimulators.org/Biosimulators_OpenCOR/
|
⚠ XFAILEXPECTED FAIL

Only CellML, SED-ML are compatible with OpenCOR.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
pyNeuroMLhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with pyNeuroML.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
PySCeShttps://docs.biosimulators.org/Biosimulators_PySCeS/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with PySCeS.

SED-ML and SBML are compatible with PySCeS.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | -|
RBApyhttps://docs.biosimulators.org/Biosimulators_RBApy/
|
⚠ XFAILEXPECTED FAIL

Only RBApy, SED-ML are compatible with RBApy.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
Smoldynhttps://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api
|
⚠ XFAILEXPECTED FAIL

Only Smoldyn, SED-ML are compatible with Smoldyn.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
Error unknown. The log.yml containing error information was not found.

| | | -|
Telluriumhttps://docs.biosimulators.org/Biosimulators_tellurium/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with Tellurium.

SED-ML and SBML are compatible with Tellurium.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | -|
VCellhttps://github.com/virtualcell/vcell
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with VCell.

BNGL, SED-ML and SBML are compatible with VCell.
|
✅ PASSview
download
logs

|
❌ FAILERROR MESSAGE:
Runtime Exception

| plot | | -|
XPPhttps://docs.biosimulators.org/Biosimulators_XPP/
|
⚠ XFAILEXPECTED FAIL

Only XPP, SED-ML are compatible with XPP.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | \ No newline at end of file +|
AMICIhttps://docs.biosimulators.org/Biosimulators_AMICI/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with AMICI.

SBML and SED-ML are compatible with AMICI.
|
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.

target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element

ERROR TYPE:
CombineArchiveExecutionError
|
❌ FAILERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.

target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element

ERROR TYPE:
CombineArchiveExecutionError
| plot | plot | +|
BioNetGenhttps://docs.biosimulators.org/Biosimulators_BioNetGen/
|
⚠ XFAILEXPECTED FAIL

Only BNGL, SED-ML are compatible with BioNetGen.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
BoolNethttps://docs.biosimulators.org/Biosimulators_BoolNet/
|
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with BoolNet.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
Brian 2https://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with Brian 2.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
CBMPyhttps://docs.biosimulators.org/Biosimulators_CBMPy/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with CBMPy.

SBML and SED-ML are compatible with CBMPy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
COBRApyhttps://docs.biosimulators.org/Biosimulators_COBRApy/
Only allows steady state simulations
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COBRApy.

SBML and SED-ML are compatible with COBRApy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
COPASIhttps://docs.biosimulators.org/Biosimulators_COPASI/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COPASI.

SBML and SED-ML are compatible with COPASI.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | +|
GillesPy2https://docs.biosimulators.org/Biosimulators_GillesPy2/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with GillesPy2.

SBML and SED-ML are compatible with GillesPy2.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
GINsimhttps://docs.biosimulators.org/Biosimulators_GINsim/
|
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with GINsim.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
LibSBMLSimhttps://docs.biosimulators.org/Biosimulators_LibSBMLSim/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with LibSBMLSim.

SBML and SED-ML are compatible with LibSBMLSim.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
MASSpyhttps://docs.biosimulators.org/Biosimulators_MASSpy/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with MASSpy.

SBML and SED-ML are compatible with MASSpy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Could not load MassModel '_30356330_Theinmozhi_PDL1_TCR_regulation'

target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] cannot be changed by XML manipulation, as the target is not an attribute of a model element

ERROR TYPE:
CombineArchiveExecutionError
|
❌ FAILERROR MESSAGE:
`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| plot | | +|
NetPyNEhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NetPyNE.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
NEURONhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NEURON.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
OpenCORhttps://docs.biosimulators.org/Biosimulators_OpenCOR/
|
⚠ XFAILEXPECTED FAIL

Only CellML, SED-ML are compatible with OpenCOR.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
pyNeuroMLhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with pyNeuroML.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
PySCeShttps://docs.biosimulators.org/Biosimulators_PySCeS/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with PySCeS.

SBML and SED-ML are compatible with PySCeS.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | +|
RBApyhttps://docs.biosimulators.org/Biosimulators_RBApy/
|
⚠ XFAILEXPECTED FAIL

Only RBApy, SED-ML are compatible with RBApy.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
Smoldynhttps://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api
|
⚠ XFAILEXPECTED FAIL

Only Smoldyn, SED-ML are compatible with Smoldyn.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
Error unknown. The log.yml containing error information was not found.

| | | +|
Telluriumhttps://docs.biosimulators.org/Biosimulators_tellurium/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with Tellurium.

SBML and SED-ML are compatible with Tellurium.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | +|
VCellhttps://github.com/virtualcell/vcell
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with VCell.

SBML, SED-ML and BNGL are compatible with VCell.
|
✅ PASSview
download
logs

|
❌ FAILERROR MESSAGE:
Runtime Exception

| plot | | +|
XPPhttps://docs.biosimulators.org/Biosimulators_XPP/
|
⚠ XFAILEXPECTED FAIL

Only XPP, SED-ML are compatible with XPP.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | \ No newline at end of file diff --git a/BioModels/BIOMD0000000724/tests/results_local.json b/BioModels/BIOMD0000000724/tests/results_local.json index 7f894940..f5d9c512 100644 --- a/BioModels/BIOMD0000000724/tests/results_local.json +++ b/BioModels/BIOMD0000000724/tests/results_local.json @@ -2,7 +2,7 @@ "amici": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/amici' returned non-zero exit status 1", "log_yml": { - "duration": 3.6184, + "duration": 3.673248, "exception": { "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.\n \n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element", "type": "CombineArchiveExecutionError" @@ -10,7 +10,7 @@ "output": "", "sedDocuments": [ { - "duration": 3.100733, + "duration": 3.075882, "exception": { "message": "The SED document did not execute successfully:\n\n Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.\n\n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element", "type": "SedmlExecutionError" @@ -25,7 +25,7 @@ "status": "SKIPPED" } ], - "duration": 0.210577, + "duration": 0.200472, "exception": null, "id": "plot_6_task2", "output": "", @@ -39,7 +39,7 @@ "status": "SKIPPED" } ], - "duration": 0.229413, + "duration": 0.163246, "exception": null, "id": "plot_7_task2", "output": "", @@ -57,7 +57,7 @@ "status": "SKIPPED" } ], - "duration": 0.205022, + "duration": 0.179896, "exception": null, "id": "plot_8_task2", "output": "", @@ -71,7 +71,7 @@ "status": "SKIPPED" } ], - "duration": 0.31253, + "duration": 0.286281, "exception": null, "id": "plot_9_task2", "output": "", @@ -85,7 +85,7 @@ "status": "SKIPPED" } ], - "duration": 0.205306, + "duration": 0.202418, "exception": null, "id": "plot_10_task2", "output": "", @@ -575,7 +575,7 @@ "status": "SKIPPED" } ], - "duration": 0.070285, + "duration": 0.067765, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -588,7 +588,7 @@ "tasks": [ { "algorithm": null, - "duration": 0.13237, + "duration": 0.117533, "exception": { "message": "Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.", "type": "SBMLException" @@ -601,7 +601,7 @@ }, { "algorithm": null, - "duration": 0.041637, + "duration": 0.190501, "exception": { "message": "target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element", "type": "ValueError" @@ -623,12 +623,12 @@ "brian2": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/brian2' returned non-zero exit status 1", "log_yml": { - "duration": 0.065134, + "duration": 0.063489, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "WARNING /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpjvi4hy8h/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n [py.warnings]\r\npyNeuroML >>> WARNING - /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpjvi4hy8h/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n\r\n", + "output": "WARNING /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp2he3k7kl/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n [py.warnings]\r\npyNeuroML >>> WARNING - /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp2he3k7kl/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -638,12 +638,12 @@ "bionetgen": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/bionetgen' returned non-zero exit status 1", "log_yml": { - "duration": 0.191136, + "duration": 0.269294, "exception": { "message": "`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpc4csjd_w/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpkblwi4ym/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -653,12 +653,12 @@ "boolnet": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/boolnet' returned non-zero exit status 1", "log_yml": { - "duration": 0.200382, + "duration": 0.183914, "exception": { "message": "`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpt_td9jjh/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpb2cxw46_/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -668,12 +668,12 @@ "cbmpy": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/cbmpy' returned non-zero exit status 1", "log_yml": { - "duration": 0.299514, + "duration": 0.255235, "exception": { "message": "`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "\r\nINFO: No xlwt module available, Excel spreadsheet creation disabled\r\n\r\n\r\n\r\nNo module named 'cplex'\r\n\r\n\r\n\r\nCPLEX not available\r\n\r\n*****\r\nUsing GLPK\r\n*****\r\n\r\n\r\nINFO: No xlrd module available, Excel spreadsheet reading disabled\r\n\r\nCBMPy environment\r\n******************\r\nRevision: r689\r\n\r\n\r\n***********************************************************************\r\n* Welcome to CBMPy (0.7.25) - PySCeS Constraint Based Modelling *\r\n* http://cbmpy.sourceforge.net *\r\n* Copyright(C) Brett G. Olivier 2014 - 2019 *\r\n* Dept. of Systems Bioinformatics *\r\n* Vrije Universiteit Amsterdam, Amsterdam, The Netherlands *\r\n* CBMPy is developed as part of the BeBasic MetaToolKit Project *\r\n* Distributed under the GNU GPL v 3.0 licence, see *\r\n* LICENCE (supplied with this release) for details *\r\n***********************************************************************\r\n\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpugzxtcse/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "\r\nINFO: No xlwt module available, Excel spreadsheet creation disabled\r\n\r\n\r\n\r\nNo module named 'cplex'\r\n\r\n\r\n\r\nCPLEX not available\r\n\r\n*****\r\nUsing GLPK\r\n*****\r\n\r\n\r\nINFO: No xlrd module available, Excel spreadsheet reading disabled\r\n\r\nCBMPy environment\r\n******************\r\nRevision: r689\r\n\r\n\r\n***********************************************************************\r\n* Welcome to CBMPy (0.7.25) - PySCeS Constraint Based Modelling *\r\n* http://cbmpy.sourceforge.net *\r\n* Copyright(C) Brett G. Olivier 2014 - 2019 *\r\n* Dept. of Systems Bioinformatics *\r\n* Vrije Universiteit Amsterdam, Amsterdam, The Netherlands *\r\n* CBMPy is developed as part of the BeBasic MetaToolKit Project *\r\n* Distributed under the GNU GPL v 3.0 licence, see *\r\n* LICENCE (supplied with this release) for details *\r\n***********************************************************************\r\n\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpg116sky3/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -683,12 +683,12 @@ "cobrapy": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/cobrapy' returned non-zero exit status 1", "log_yml": { - "duration": 0.209949, + "duration": 0.17102, "exception": { "message": "`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp8nq63fqb/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpoh3n2shi/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -698,12 +698,12 @@ "copasi": { "exception_message": "", "log_yml": { - "duration": 3.112999, + "duration": 3.264843, "exception": null, - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmps3zyvh7q/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmps3zyvh7q/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp_wddmlq3/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp_wddmlq3/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [ { - "duration": 2.540741, + "duration": 2.3926, "exception": null, "location": "Theinmozhi_2018.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 5 plots:\r\n Theinmozhi_2018.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 120 data sets\r\n Plots (5):\r\n plot_10_task2: 1 curves\r\n plot_6_task2: 1 curves\r\n plot_7_task2: 1 curves\r\n plot_8_task2: 2 curves\r\n plot_9_task2: 1 curves\r\n\r\nExecuting SED-ML file 1: Theinmozhi_2018.sedml ...\r\n Found 1 tasks and 6 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_10_task2`\r\n `plot_6_task2`\r\n `plot_7_task2`\r\n `plot_8_task2`\r\n `plot_9_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 6 outputs ...\r\n Generating output 1: `plot_6_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `plot_7_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 3: `plot_8_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 4: `plot_9_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 5: `plot_10_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 6: `autogen_report_for_task2` ...", @@ -715,7 +715,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.352941, + "duration": 0.294191, "exception": null, "id": "plot_6_task2", "output": "", @@ -729,7 +729,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.252996, + "duration": 0.220769, "exception": null, "id": "plot_7_task2", "output": "", @@ -747,7 +747,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.24955, + "duration": 0.292428, "exception": null, "id": "plot_8_task2", "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", @@ -761,7 +761,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.216039, + "duration": 0.224587, "exception": null, "id": "plot_9_task2", "output": "", @@ -775,7 +775,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.208084, + "duration": 0.249276, "exception": null, "id": "plot_10_task2", "output": "", @@ -1265,7 +1265,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.221001, + "duration": 0.171407, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -1278,10 +1278,10 @@ "tasks": [ { "algorithm": null, - "duration": 0.524146, + "duration": 0.421953, "exception": null, "id": "task2", - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmps3zyvh7q/tmph_tsi_o4.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'LSODA/LSODAR hybrid method' (KISAO_0000560) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmps3zyvh7q/tmpknf5u8wc.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmp_wddmlq3/tmpyynxx_4n.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'LSODA/LSODAR hybrid method' (KISAO_0000560) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmp_wddmlq3/tmp_cf8cs1k.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "simulatorDetails": null, "skipReason": null, "status": "SUCCEEDED" @@ -1297,12 +1297,12 @@ "gillespy2": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/gillespy2' returned non-zero exit status 1", "log_yml": { - "duration": 0.223186, + "duration": 0.183644, "exception": { "message": "`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmph_hayu60/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpbuzu5qga/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1312,12 +1312,12 @@ "ginsim": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/ginsim' returned non-zero exit status 1", "log_yml": { - "duration": 0.194907, + "duration": 0.178154, "exception": { "message": "`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpvzuea892/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp598x9i_u/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1327,12 +1327,12 @@ "libsbmlsim": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/libsbmlsim' returned non-zero exit status 1", "log_yml": { - "duration": 0.214332, + "duration": 0.218582, "exception": { "message": "`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpv0kzovyl/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpjghrtv07/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1342,12 +1342,12 @@ "masspy": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/masspy' returned non-zero exit status 1", "log_yml": { - "duration": 0.192383, + "duration": 0.166265, "exception": { "message": "`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mSedmlFeatureNotSupportedWarning\u001b[0m: \u001b[33m`/tmp/tmpsjq8q5mt/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mSedmlFeatureNotSupportedWarning\u001b[0m: \u001b[33m`/tmp/tmph_gz4n19/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1357,7 +1357,7 @@ "netpyne": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/netpyne' returned non-zero exit status 1", "log_yml": { - "duration": 0.050738, + "duration": 0.052341, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -1372,12 +1372,12 @@ "neuron": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/neuron' returned non-zero exit status 1", "log_yml": { - "duration": 0.067088, + "duration": 0.059977, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpb8dynd_6/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp9nxq28uk/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1387,12 +1387,12 @@ "opencor": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/opencor' returned non-zero exit status 1", "log_yml": { - "duration": 0.081607, + "duration": 0.077544, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpwe1w_br6/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", + "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpbdxtb4_p/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1402,12 +1402,12 @@ "pyneuroml": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/pyneuroml' returned non-zero exit status 1", "log_yml": { - "duration": 0.057649, + "duration": 0.156048, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpyztwzgfb/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmprw_hwkms/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1417,15 +1417,15 @@ "pysces": { "exception_message": "", "log_yml": { - "duration": 5.233583, + "duration": 5.153343, "exception": null, - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp21yngzy2/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp21yngzy2/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmptpxqie8w/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmptpxqie8w/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [ { - "duration": 4.715052, + "duration": 4.599817, "exception": null, "location": "Theinmozhi_2018.sedml", - "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 5 plots:\r\n Theinmozhi_2018.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 120 data sets\r\n Plots (5):\r\n plot_10_task2: 1 curves\r\n plot_6_task2: 1 curves\r\n plot_7_task2: 1 curves\r\n plot_8_task2: 2 curves\r\n plot_9_task2: 1 curves\r\n\r\nExecuting SED-ML file 1: Theinmozhi_2018.sedml ...\r\n Found 1 tasks and 6 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_10_task2`\r\n `plot_6_task2`\r\n `plot_7_task2`\r\n `plot_8_task2`\r\n `plot_9_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...Info: single compartment model: locating \"CP2_DP_CP1\" in default compartment\r\nInfo: single compartment model: locating \"CP1_Diss_PD1_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CD28i_P_CD28a\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_DP_CD28i\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_Bd_PI3K\" in default compartment\r\nInfo: single compartment model: locating \"CD3i_P_CD3a\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_DP_CD3i\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_Bd_ZAP70\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70i_P_ZAP70a1\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70a1_P_ZAP70a2\" in default compartment\r\nInfo: single compartment model: locating \"LATi_P_LATa\" in default compartment\r\nInfo: single compartment model: locating \"LATa_Bd_GADS\" in default compartment\r\nInfo: single compartment model: locating \"GADSa_Bd_SLP76\" in default compartment\r\nInfo: single compartment model: locating \"SLP76i_P_SLC76a\" in default compartment\r\nWriting file: /tmp/tmplbpihl9w.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpm2swa43p.xml\r\nout: /tmp/tmplbpihl9w.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmplbpihl9w.psc loading ..... \r\nParsing file: /tmp/tmplbpihl9w.psc\r\nWarning: species \"LCKinactive\" (fixed) does not occur in any reaction\r\nWarning: species \"CD3t\" (fixed) does not occur in any reaction\r\nWarning: species \"SLP76t\" (fixed) does not occur in any reaction\r\nWarning: species \"GADSt\" (fixed) does not occur in any reaction\r\nWarning: species \"LATt\" (fixed) does not occur in any reaction\r\nWarning: species \"ZAP70t\" (fixed) does not occur in any reaction\r\nWarning: species \"PI3Kt\" (fixed) does not occur in any reaction\r\nWarning: species \"CD28t\" (fixed) does not occur in any reaction\r\nWarning: species \"CPactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKt\" (fixed) does not occur in any reaction\r\nInfo: \"CD28t\" has been initialised but does not occur in a rate equation\r\nInfo: \"PI3Kt\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LATt\" has been initialised but does not occur in a rate equation\r\nInfo: \"GADSt\" has been initialised but does not occur in a rate equation\r\nInfo: \"SLP76t\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCKinactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"Kdpa_yiya\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_bound\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3z_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD28_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_PI3K_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_ZAP70_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y315\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y93\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y505\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y394\" has been initialised but does not occur in a rate equation\r\nInfo: \"LAT_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_active\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_inactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_switch\" has been initialised but does not occur in a rate equation\r\nInfo: \"ModelValue_0\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 101 points: 0.10462474822998047\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 6 outputs ...\r\n Generating output 1: `plot_6_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `plot_7_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 3: `plot_8_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 4: `plot_9_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 5: `plot_10_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 6: `autogen_report_for_task2` ...", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 5 plots:\r\n Theinmozhi_2018.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 120 data sets\r\n Plots (5):\r\n plot_10_task2: 1 curves\r\n plot_6_task2: 1 curves\r\n plot_7_task2: 1 curves\r\n plot_8_task2: 2 curves\r\n plot_9_task2: 1 curves\r\n\r\nExecuting SED-ML file 1: Theinmozhi_2018.sedml ...\r\n Found 1 tasks and 6 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_10_task2`\r\n `plot_6_task2`\r\n `plot_7_task2`\r\n `plot_8_task2`\r\n `plot_9_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...Info: single compartment model: locating \"CP2_DP_CP1\" in default compartment\r\nInfo: single compartment model: locating \"CP1_Diss_PD1_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CD28i_P_CD28a\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_DP_CD28i\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_Bd_PI3K\" in default compartment\r\nInfo: single compartment model: locating \"CD3i_P_CD3a\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_DP_CD3i\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_Bd_ZAP70\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70i_P_ZAP70a1\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70a1_P_ZAP70a2\" in default compartment\r\nInfo: single compartment model: locating \"LATi_P_LATa\" in default compartment\r\nInfo: single compartment model: locating \"LATa_Bd_GADS\" in default compartment\r\nInfo: single compartment model: locating \"GADSa_Bd_SLP76\" in default compartment\r\nInfo: single compartment model: locating \"SLP76i_P_SLC76a\" in default compartment\r\nWriting file: /tmp/tmp9diudle9.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpjmnu4i6p.xml\r\nout: /tmp/tmp9diudle9.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmp9diudle9.psc loading ..... \r\nParsing file: /tmp/tmp9diudle9.psc\r\nWarning: species \"LCKinactive\" (fixed) does not occur in any reaction\r\nWarning: species \"CD3t\" (fixed) does not occur in any reaction\r\nWarning: species \"SLP76t\" (fixed) does not occur in any reaction\r\nWarning: species \"GADSt\" (fixed) does not occur in any reaction\r\nWarning: species \"LATt\" (fixed) does not occur in any reaction\r\nWarning: species \"ZAP70t\" (fixed) does not occur in any reaction\r\nWarning: species \"PI3Kt\" (fixed) does not occur in any reaction\r\nWarning: species \"CD28t\" (fixed) does not occur in any reaction\r\nWarning: species \"CPactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKt\" (fixed) does not occur in any reaction\r\nInfo: \"CD28t\" has been initialised but does not occur in a rate equation\r\nInfo: \"PI3Kt\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LATt\" has been initialised but does not occur in a rate equation\r\nInfo: \"GADSt\" has been initialised but does not occur in a rate equation\r\nInfo: \"SLP76t\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCKinactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"Kdpa_yiya\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_bound\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3z_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD28_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_PI3K_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_ZAP70_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y315\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y93\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y505\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y394\" has been initialised but does not occur in a rate equation\r\nInfo: \"LAT_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_active\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_inactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_switch\" has been initialised but does not occur in a rate equation\r\nInfo: \"ModelValue_0\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 101 points: 0.1041567325592041\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 6 outputs ...\r\n Generating output 1: `plot_6_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `plot_7_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 3: `plot_8_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 4: `plot_9_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 5: `plot_10_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 6: `autogen_report_for_task2` ...", "outputs": [ { "curves": [ @@ -1434,7 +1434,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.324473, + "duration": 0.32479, "exception": null, "id": "plot_6_task2", "output": "", @@ -1448,7 +1448,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.139231, + "duration": 0.124499, "exception": null, "id": "plot_7_task2", "output": "", @@ -1466,7 +1466,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.171815, + "duration": 0.135296, "exception": null, "id": "plot_8_task2", "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", @@ -1480,7 +1480,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.138369, + "duration": 0.253619, "exception": null, "id": "plot_9_task2", "output": "", @@ -1494,7 +1494,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.160614, + "duration": 0.150726, "exception": null, "id": "plot_10_task2", "output": "", @@ -1984,7 +1984,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.361611, + "duration": 0.201563, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -1997,10 +1997,10 @@ "tasks": [ { "algorithm": null, - "duration": 2.790847, + "duration": 2.725857, "exception": null, "id": "task2", - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmp75era17h.xml\r\n*******************************************************************\r\n\r\nParameter units ignored for parameters:\r\n['Kdpa_yiya', 'Kdpi_yi', 'Kdpi_yiya', 'Kdpa_ya', 'Kdpa_pi', 'Kpi_i', 'Kpi_ya', 'Kpa_i', 'Kpa_yi', 'Kp_pd1', 'KMp_pd1', 'Ka_shp', 'Kd1_shp', 'Kd2_shp', 'Kdp_cp2', 'Kp_cd28', 'KMp_cd28', 'Kdp_cd28', 'KMdp_cd28', 'Ka_pi3k', 'Kd_pi3k', 'Kp_cd3', 'KMp_cd3', 'Kdp_cd3', 'KMdp_cd3', 'Ka_zap', 'Kd_zap', 'Kp1_zap', 'Kp2_zap', 'Kp_lat', 'Ka_gads', 'Kd_gads', 'Ka_slp', 'Kd_slp', 'Kp_slp', 'perc_SHP2_bound'] \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"LCK_P_LCKyi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCK_P_LCKya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_P_LCKyiya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_P_LCKpi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKya\" in default compartment\r\nInfo: single compartment model: locating \"LCKpi_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"PD1_P_PD1p1_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_P_PD1p2_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"PD1p2_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CP2_Diss_SHP2_PD1p1\" in default compartment\r\nInfo: single compartment model: locating \"CP2_DP_CP1\" in default compartment\r\nInfo: single compartment model: locating \"CP1_Diss_PD1_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CD28i_P_CD28a\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_DP_CD28i\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_Bd_PI3K\" in default compartment\r\nInfo: single compartment model: locating \"CD3i_P_CD3a\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_DP_CD3i\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_Bd_ZAP70\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70i_P_ZAP70a1\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70a1_P_ZAP70a2\" in default compartment\r\nInfo: single compartment model: locating \"LATi_P_LATa\" in default compartment\r\nInfo: single compartment model: locating \"LATa_Bd_GADS\" in default compartment\r\nInfo: single compartment model: locating \"GADSa_Bd_SLP76\" in default compartment\r\nInfo: single compartment model: locating \"SLP76i_P_SLC76a\" in default compartment\r\nWriting file: /tmp/tmptwr2y1mz.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmp75era17h.xml\r\nout: /tmp/tmptwr2y1mz.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmptwr2y1mz.psc loading ..... \r\nParsing file: /tmp/tmptwr2y1mz.psc\r\nWarning: species \"LCKinactive\" (fixed) does not occur in any reaction\r\nWarning: species \"CD3t\" (fixed) does not occur in any reaction\r\nWarning: species \"SLP76t\" (fixed) does not occur in any reaction\r\nWarning: species \"GADSt\" (fixed) does not occur in any reaction\r\nWarning: species \"LATt\" (fixed) does not occur in any reaction\r\nWarning: species \"ZAP70t\" (fixed) does not occur in any reaction\r\nWarning: species \"PI3Kt\" (fixed) does not occur in any reaction\r\nWarning: species \"CD28t\" (fixed) does not occur in any reaction\r\nWarning: species \"CPactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKt\" (fixed) does not occur in any reaction\r\nInfo: \"CD28t\" has been initialised but does not occur in a rate equation\r\nInfo: \"PI3Kt\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LATt\" has been initialised but does not occur in a rate equation\r\nInfo: \"GADSt\" has been initialised but does not occur in a rate equation\r\nInfo: \"SLP76t\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCKinactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"Kdpa_yiya\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_bound\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3z_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD28_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_PI3K_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_ZAP70_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y315\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y93\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y505\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y394\" has been initialised but does not occur in a rate equation\r\nInfo: \"LAT_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_active\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_inactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_switch\" has been initialised but does not occur in a rate equation\r\nInfo: \"ModelValue_0\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 101 points: 0.11254334449768066\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmpm2swa43p.xml\r\n*******************************************************************\r\n\r\nParameter units ignored for parameters:\r\n['Kdpa_yiya', 'Kdpi_yi', 'Kdpi_yiya', 'Kdpa_ya', 'Kdpa_pi', 'Kpi_i', 'Kpi_ya', 'Kpa_i', 'Kpa_yi', 'Kp_pd1', 'KMp_pd1', 'Ka_shp', 'Kd1_shp', 'Kd2_shp', 'Kdp_cp2', 'Kp_cd28', 'KMp_cd28', 'Kdp_cd28', 'KMdp_cd28', 'Ka_pi3k', 'Kd_pi3k', 'Kp_cd3', 'KMp_cd3', 'Kdp_cd3', 'KMdp_cd3', 'Ka_zap', 'Kd_zap', 'Kp1_zap', 'Kp2_zap', 'Kp_lat', 'Ka_gads', 'Kd_gads', 'Ka_slp', 'Kd_slp', 'Kp_slp', 'perc_SHP2_bound'] \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"LCK_P_LCKyi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCK_P_LCKya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_P_LCKyiya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_P_LCKpi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKya\" in default compartment\r\nInfo: single compartment model: locating \"LCKpi_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"PD1_P_PD1p1_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_P_PD1p2_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"PD1p2_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CP2_Diss_SHP2_PD1p1\" in default compartment\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmp13ztaf41.xml\r\n*******************************************************************\r\n\r\nParameter units ignored for parameters:\r\n['Kdpa_yiya', 'Kdpi_yi', 'Kdpi_yiya', 'Kdpa_ya', 'Kdpa_pi', 'Kpi_i', 'Kpi_ya', 'Kpa_i', 'Kpa_yi', 'Kp_pd1', 'KMp_pd1', 'Ka_shp', 'Kd1_shp', 'Kd2_shp', 'Kdp_cp2', 'Kp_cd28', 'KMp_cd28', 'Kdp_cd28', 'KMdp_cd28', 'Ka_pi3k', 'Kd_pi3k', 'Kp_cd3', 'KMp_cd3', 'Kdp_cd3', 'KMdp_cd3', 'Ka_zap', 'Kd_zap', 'Kp1_zap', 'Kp2_zap', 'Kp_lat', 'Ka_gads', 'Kd_gads', 'Ka_slp', 'Kd_slp', 'Kp_slp', 'perc_SHP2_bound'] \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"LCK_P_LCKyi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCK_P_LCKya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_P_LCKyiya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_P_LCKpi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKya\" in default compartment\r\nInfo: single compartment model: locating \"LCKpi_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"PD1_P_PD1p1_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_P_PD1p2_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"PD1p2_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CP2_Diss_SHP2_PD1p1\" in default compartment\r\nInfo: single compartment model: locating \"CP2_DP_CP1\" in default compartment\r\nInfo: single compartment model: locating \"CP1_Diss_PD1_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CD28i_P_CD28a\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_DP_CD28i\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_Bd_PI3K\" in default compartment\r\nInfo: single compartment model: locating \"CD3i_P_CD3a\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_DP_CD3i\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_Bd_ZAP70\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70i_P_ZAP70a1\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70a1_P_ZAP70a2\" in default compartment\r\nInfo: single compartment model: locating \"LATi_P_LATa\" in default compartment\r\nInfo: single compartment model: locating \"LATa_Bd_GADS\" in default compartment\r\nInfo: single compartment model: locating \"GADSa_Bd_SLP76\" in default compartment\r\nInfo: single compartment model: locating \"SLP76i_P_SLC76a\" in default compartment\r\nWriting file: /tmp/tmp5qc2sv4g.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmp13ztaf41.xml\r\nout: /tmp/tmp5qc2sv4g.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmp5qc2sv4g.psc loading ..... \r\nParsing file: /tmp/tmp5qc2sv4g.psc\r\nWarning: species \"LCKinactive\" (fixed) does not occur in any reaction\r\nWarning: species \"CD3t\" (fixed) does not occur in any reaction\r\nWarning: species \"SLP76t\" (fixed) does not occur in any reaction\r\nWarning: species \"GADSt\" (fixed) does not occur in any reaction\r\nWarning: species \"LATt\" (fixed) does not occur in any reaction\r\nWarning: species \"ZAP70t\" (fixed) does not occur in any reaction\r\nWarning: species \"PI3Kt\" (fixed) does not occur in any reaction\r\nWarning: species \"CD28t\" (fixed) does not occur in any reaction\r\nWarning: species \"CPactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKt\" (fixed) does not occur in any reaction\r\nInfo: \"CD28t\" has been initialised but does not occur in a rate equation\r\nInfo: \"PI3Kt\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LATt\" has been initialised but does not occur in a rate equation\r\nInfo: \"GADSt\" has been initialised but does not occur in a rate equation\r\nInfo: \"SLP76t\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCKinactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"Kdpa_yiya\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_bound\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3z_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD28_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_PI3K_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_ZAP70_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y315\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y93\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y505\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y394\" has been initialised but does not occur in a rate equation\r\nInfo: \"LAT_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_active\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_inactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_switch\" has been initialised but does not occur in a rate equation\r\nInfo: \"ModelValue_0\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 101 points: 0.1160132884979248\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmpjmnu4i6p.xml\r\n*******************************************************************\r\n\r\nParameter units ignored for parameters:\r\n['Kdpa_yiya', 'Kdpi_yi', 'Kdpi_yiya', 'Kdpa_ya', 'Kdpa_pi', 'Kpi_i', 'Kpi_ya', 'Kpa_i', 'Kpa_yi', 'Kp_pd1', 'KMp_pd1', 'Ka_shp', 'Kd1_shp', 'Kd2_shp', 'Kdp_cp2', 'Kp_cd28', 'KMp_cd28', 'Kdp_cd28', 'KMdp_cd28', 'Ka_pi3k', 'Kd_pi3k', 'Kp_cd3', 'KMp_cd3', 'Kdp_cd3', 'KMdp_cd3', 'Ka_zap', 'Kd_zap', 'Kp1_zap', 'Kp2_zap', 'Kp_lat', 'Ka_gads', 'Kd_gads', 'Ka_slp', 'Kd_slp', 'Kp_slp', 'perc_SHP2_bound'] \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"LCK_P_LCKyi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCK_P_LCKya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_P_LCKyiya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_P_LCKpi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKya\" in default compartment\r\nInfo: single compartment model: locating \"LCKpi_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"PD1_P_PD1p1_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_P_PD1p2_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"PD1p2_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CP2_Diss_SHP2_PD1p1\" in default compartment\r\n", "simulatorDetails": null, "skipReason": null, "status": "SUCCEEDED" @@ -2016,12 +2016,12 @@ "rbapy": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/rbapy' returned non-zero exit status 1", "log_yml": { - "duration": 0.201855, + "duration": 0.174784, "exception": { "message": "`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmposscluog/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmprdbjcrqy/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -2036,12 +2036,12 @@ "tellurium": { "exception_message": "", "log_yml": { - "duration": 2.683102, + "duration": 3.089811, "exception": null, - "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmp8k26xsn5/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmp8k26xsn5/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n", + "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmpi_5yhy86/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmpi_5yhy86/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n", "sedDocuments": [ { - "duration": 2.162615, + "duration": 2.523413, "exception": null, "location": "Theinmozhi_2018.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 5 plots:\r\n Theinmozhi_2018.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 120 data sets\r\n Plots (5):\r\n plot_10_task2: 1 curves\r\n plot_6_task2: 1 curves\r\n plot_7_task2: 1 curves\r\n plot_8_task2: 2 curves\r\n plot_9_task2: 1 curves\r\n\r\nExecuting SED-ML file 1: Theinmozhi_2018.sedml ...\r\n Found 1 tasks and 6 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_10_task2`\r\n `plot_6_task2`\r\n `plot_7_task2`\r\n `plot_8_task2`\r\n `plot_9_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 6 outputs ...\r\n Generating output 1: `plot_6_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `plot_7_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 3: `plot_8_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 4: `plot_9_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 5: `plot_10_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 6: `autogen_report_for_task2` ...", @@ -2053,7 +2053,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.271984, + "duration": 0.287259, "exception": null, "id": "plot_6_task2", "output": "", @@ -2067,7 +2067,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.212757, + "duration": 0.20391, "exception": null, "id": "plot_7_task2", "output": "", @@ -2085,7 +2085,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.365539, + "duration": 0.426901, "exception": null, "id": "plot_8_task2", "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning:\r\n\r\n\u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n\r\n", @@ -2099,7 +2099,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.21375, + "duration": 0.434322, "exception": null, "id": "plot_9_task2", "output": "", @@ -2113,7 +2113,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.207144, + "duration": 0.228164, "exception": null, "id": "plot_10_task2", "output": "", @@ -2603,7 +2603,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.195382, + "duration": 0.203789, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -2616,10 +2616,10 @@ "tasks": [ { "algorithm": null, - "duration": 0.277226, + "duration": 0.228865, "exception": null, "id": "task2", - "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33m- Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmp8k26xsn5/./Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning:\r\n\r\n\u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mAlgorithm parameter with KiSAO id 'KISAO_0000216' was ignored because it is not supported. Parameter must have one of the following KiSAO ids:\r\n - KISAO_0000209: relative_tolerance (relative tolerance)\r\n - KISAO_0000211: absolute_tolerance (absolute tolerance)\r\n - KISAO_0000571: absolute_tolerance_adjustment_factor (absolute tolerance adjustment factor)\r\n - KISAO_0000220: maximum_bdf_order (Maximum Backward Differentiation Formula (BDF) order)\r\n - KISAO_0000219: maximum_adams_order (Maximum Adams order)\r\n - KISAO_0000415: maximum_num_steps (Maximum number of steps)\r\n - KISAO_0000467: maximum_time_step (Maximum time step)\r\n - KISAO_0000485: minimum_time_step (Minimum time step)\r\n - KISAO_0000559: initial_time_step (Initial time step)\r\n - KISAO_0000671: stiff (Stiff)\r\n - KISAO_0000670: multiple_steps (Multiple steps)\u001b[0m\r\n\r\n", + "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33m- Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmpi_5yhy86/./Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning:\r\n\r\n\u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mAlgorithm parameter with KiSAO id 'KISAO_0000216' was ignored because it is not supported. Parameter must have one of the following KiSAO ids:\r\n - KISAO_0000209: relative_tolerance (relative tolerance)\r\n - KISAO_0000211: absolute_tolerance (absolute tolerance)\r\n - KISAO_0000571: absolute_tolerance_adjustment_factor (absolute tolerance adjustment factor)\r\n - KISAO_0000220: maximum_bdf_order (Maximum Backward Differentiation Formula (BDF) order)\r\n - KISAO_0000219: maximum_adams_order (Maximum Adams order)\r\n - KISAO_0000415: maximum_num_steps (Maximum number of steps)\r\n - KISAO_0000467: maximum_time_step (Maximum time step)\r\n - KISAO_0000485: minimum_time_step (Minimum time step)\r\n - KISAO_0000559: initial_time_step (Initial time step)\r\n - KISAO_0000671: stiff (Stiff)\r\n - KISAO_0000670: multiple_steps (Multiple steps)\u001b[0m\r\n\r\n", "simulatorDetails": null, "skipReason": null, "status": "SUCCEEDED" @@ -2635,7 +2635,7 @@ "vcell": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/vcell' returned non-zero exit status 1", "log_yml": { - "duration": 6, + "duration": 4, "exception": null, "output": "Processing Theinmozhi_2018.sedml. Done", "sedDocuments": [ @@ -3250,12 +3250,12 @@ "xpp": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/xpp' returned non-zero exit status 1", "log_yml": { - "duration": 0.069555, + "duration": 0.051701, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpsc9ck7p3/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpqyuyjj9l/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" diff --git a/BioModels/BIOMD0000000724/tests/results_remote.json b/BioModels/BIOMD0000000724/tests/results_remote.json index 04b59548..3474c44c 100644 --- a/BioModels/BIOMD0000000724/tests/results_remote.json +++ b/BioModels/BIOMD0000000724/tests/results_remote.json @@ -1,11 +1,11 @@ { "amici": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc64e10bb4455d6187637", - "download": "https://api.biosimulations.org/results/674dc64e10bb4455d6187637/download", - "logs": "https://api.biosimulations.org/logs/674dc64e10bb4455d6187637?includeOutput=true", + "view": "https://api.biosimulations.org/runs/675999e9c3054f763d585989", + "download": "https://api.biosimulations.org/results/675999e9c3054f763d585989/download", + "logs": "https://api.biosimulations.org/logs/675999e9c3054f763d585989?includeOutput=true", "log_yml": { - "duration": 2.773027, + "duration": 2.719446, "exception": { "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.\n \n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element", "type": "CombineArchiveExecutionError" @@ -13,7 +13,7 @@ "output": "", "sedDocuments": [ { - "duration": 2.257669, + "duration": 2.213391, "exception": { "message": "The SED document did not execute successfully:\n\n Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.\n\n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element", "type": "SedmlExecutionError" @@ -28,7 +28,7 @@ "status": "SKIPPED" } ], - "duration": 0.10247, + "duration": 0.102998, "exception": null, "id": "plot_6_task2", "output": "", @@ -42,7 +42,7 @@ "status": "SKIPPED" } ], - "duration": 0.098795, + "duration": 0.104245, "exception": null, "id": "plot_7_task2", "output": "", @@ -60,7 +60,7 @@ "status": "SKIPPED" } ], - "duration": 0.103154, + "duration": 0.109426, "exception": null, "id": "plot_8_task2", "output": "", @@ -74,7 +74,7 @@ "status": "SKIPPED" } ], - "duration": 0.108454, + "duration": 0.106596, "exception": null, "id": "plot_9_task2", "output": "", @@ -88,7 +88,7 @@ "status": "SKIPPED" } ], - "duration": 0.102384, + "duration": 0.104431, "exception": null, "id": "plot_10_task2", "output": "", @@ -578,7 +578,7 @@ "status": "SKIPPED" } ], - "duration": 0.053332, + "duration": 0.053558, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -591,7 +591,7 @@ "tasks": [ { "algorithm": null, - "duration": 0.157507, + "duration": 0.153917, "exception": { "message": "Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.", "type": "SBMLException" @@ -604,7 +604,7 @@ }, { "algorithm": null, - "duration": 0.039869, + "duration": 0.041214, "exception": { "message": "target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element", "type": "ValueError" @@ -624,11 +624,11 @@ }, "brian2": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc650261553b9bc253e95", - "download": "https://api.biosimulations.org/results/674dc650261553b9bc253e95/download", - "logs": "https://api.biosimulations.org/logs/674dc650261553b9bc253e95?includeOutput=true", + "view": "https://api.biosimulations.org/runs/675999ebc3054f763d58598f", + "download": "https://api.biosimulations.org/results/675999ebc3054f763d58598f/download", + "logs": "https://api.biosimulations.org/logs/675999ebc3054f763d58598f?includeOutput=true", "log_yml": { - "duration": 0.061717, + "duration": 0.08301, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -641,11 +641,11 @@ }, "bionetgen": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc651261553b9bc253e98", - "download": "https://api.biosimulations.org/results/674dc651261553b9bc253e98/download", - "logs": "https://api.biosimulations.org/logs/674dc651261553b9bc253e98?includeOutput=true", + "view": "https://api.biosimulations.org/runs/675999ec707aa64104620d7c", + "download": "https://api.biosimulations.org/results/675999ec707aa64104620d7c/download", + "logs": "https://api.biosimulations.org/logs/675999ec707aa64104620d7c?includeOutput=true", "log_yml": { - "duration": 0.246259, + "duration": 0.25008, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -658,11 +658,11 @@ }, "boolnet": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc653ef911d5d45259ac2", - "download": "https://api.biosimulations.org/results/674dc653ef911d5d45259ac2/download", - "logs": "https://api.biosimulations.org/logs/674dc653ef911d5d45259ac2?includeOutput=true", + "view": "https://api.biosimulations.org/runs/675999eec3054f763d585992", + "download": "https://api.biosimulations.org/results/675999eec3054f763d585992/download", + "logs": "https://api.biosimulations.org/logs/675999eec3054f763d585992?includeOutput=true", "log_yml": { - "duration": 0.301955, + "duration": 0.264474, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -675,11 +675,11 @@ }, "cbmpy": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc655261553b9bc253e9b", - "download": "https://api.biosimulations.org/results/674dc655261553b9bc253e9b/download", - "logs": "https://api.biosimulations.org/logs/674dc655261553b9bc253e9b?includeOutput=true", + "view": "https://api.biosimulations.org/runs/675999f0c3054f763d585995", + "download": "https://api.biosimulations.org/results/675999f0c3054f763d585995/download", + "logs": "https://api.biosimulations.org/logs/675999f0c3054f763d585995?includeOutput=true", "log_yml": { - "duration": 0.348016, + "duration": 0.350226, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -692,11 +692,11 @@ }, "cobrapy": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc658261553b9bc253ea0", - "download": "https://api.biosimulations.org/results/674dc658261553b9bc253ea0/download", - "logs": "https://api.biosimulations.org/logs/674dc658261553b9bc253ea0?includeOutput=true", + "view": "https://api.biosimulations.org/runs/675999f29fa297efdca4d39e", + "download": "https://api.biosimulations.org/results/675999f29fa297efdca4d39e/download", + "logs": "https://api.biosimulations.org/logs/675999f29fa297efdca4d39e?includeOutput=true", "log_yml": { - "duration": 0.254102, + "duration": 0.261318, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -709,16 +709,16 @@ }, "copasi": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc65aef911d5d45259acd", - "download": "https://api.biosimulations.org/results/674dc65aef911d5d45259acd/download", - "logs": "https://api.biosimulations.org/logs/674dc65aef911d5d45259acd?includeOutput=true", + "view": "https://api.biosimulations.org/runs/675999f4c3054f763d58599e", + "download": "https://api.biosimulations.org/results/675999f4c3054f763d58599e/download", + "logs": "https://api.biosimulations.org/logs/675999f4c3054f763d58599e?includeOutput=true", "log_yml": { - "duration": 2.764347, + "duration": 2.715015, "exception": null, "output": "", "sedDocuments": [ { - "duration": 2.259948, + "duration": 2.186595, "exception": null, "location": "Theinmozhi_2018.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 5 plots:\r\n Theinmozhi_2018.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 120 data sets\r\n Plots (5):\r\n plot_10_task2: 1 curves\r\n plot_6_task2: 1 curves\r\n plot_7_task2: 1 curves\r\n plot_8_task2: 2 curves\r\n plot_9_task2: 1 curves\r\n\r\nExecuting SED-ML file 1: Theinmozhi_2018.sedml ...\r\n Found 1 tasks and 6 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_10_task2`\r\n `plot_6_task2`\r\n `plot_7_task2`\r\n `plot_8_task2`\r\n `plot_9_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...woohoo!\r\nwoohoo!\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 6 outputs ...\r\n Generating output 1: `plot_6_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `plot_7_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 3: `plot_8_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 4: `plot_9_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 5: `plot_10_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 6: `autogen_report_for_task2` ...", @@ -730,7 +730,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.431834, + "duration": 0.44773, "exception": null, "id": "plot_6_task2", "output": "", @@ -744,7 +744,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.144277, + "duration": 0.125284, "exception": null, "id": "plot_7_task2", "output": "", @@ -762,7 +762,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.159484, + "duration": 0.1364, "exception": null, "id": "plot_8_task2", "output": "", @@ -776,7 +776,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.131023, + "duration": 0.118575, "exception": null, "id": "plot_9_task2", "output": "", @@ -790,7 +790,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.126484, + "duration": 0.120286, "exception": null, "id": "plot_10_task2", "output": "", @@ -1280,7 +1280,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.210016, + "duration": 0.204297, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -1293,7 +1293,7 @@ "tasks": [ { "algorithm": null, - "duration": 0.630906, + "duration": 0.629107, "exception": null, "id": "task2", "output": "", @@ -1310,11 +1310,11 @@ }, "gillespy2": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc65c10bb4455d6187641", - "download": "https://api.biosimulations.org/results/674dc65c10bb4455d6187641/download", - "logs": "https://api.biosimulations.org/logs/674dc65c10bb4455d6187641?includeOutput=true", + "view": "https://api.biosimulations.org/runs/675999f69fa297efdca4d3a4", + "download": "https://api.biosimulations.org/results/675999f69fa297efdca4d3a4/download", + "logs": "https://api.biosimulations.org/logs/675999f69fa297efdca4d3a4?includeOutput=true", "log_yml": { - "duration": 0.259848, + "duration": 0.256454, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -1327,11 +1327,11 @@ }, "ginsim": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc65e10bb4455d6187644", - "download": "https://api.biosimulations.org/results/674dc65e10bb4455d6187644/download", - "logs": "https://api.biosimulations.org/logs/674dc65e10bb4455d6187644?includeOutput=true", + "view": "https://api.biosimulations.org/runs/675999f89fa297efdca4d3a9", + "download": "https://api.biosimulations.org/results/675999f89fa297efdca4d3a9/download", + "logs": "https://api.biosimulations.org/logs/675999f89fa297efdca4d3a9?includeOutput=true", "log_yml": { - "duration": 0.244446, + "duration": 0.25789, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -1344,11 +1344,11 @@ }, "libsbmlsim": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc66010bb4455d6187647", - "download": "https://api.biosimulations.org/results/674dc66010bb4455d6187647/download", - "logs": "https://api.biosimulations.org/logs/674dc66010bb4455d6187647?includeOutput=true", + "view": "https://api.biosimulations.org/runs/675999fac3054f763d5859a8", + "download": "https://api.biosimulations.org/results/675999fac3054f763d5859a8/download", + "logs": "https://api.biosimulations.org/logs/675999fac3054f763d5859a8?includeOutput=true", "log_yml": { - "duration": 0.277522, + "duration": 0.248469, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -1361,11 +1361,11 @@ }, "masspy": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc662261553b9bc253ea7", - "download": "https://api.biosimulations.org/results/674dc662261553b9bc253ea7/download", - "logs": "https://api.biosimulations.org/logs/674dc662261553b9bc253ea7?includeOutput=true", + "view": "https://api.biosimulations.org/runs/675999fc707aa64104620d98", + "download": "https://api.biosimulations.org/results/675999fc707aa64104620d98/download", + "logs": "https://api.biosimulations.org/logs/675999fc707aa64104620d98?includeOutput=true", "log_yml": { - "duration": 3.670606, + "duration": 3.400673, "exception": { "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n Could not load MassModel '_30356330_Theinmozhi_PDL1_TCR_regulation'\n \n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] cannot be changed by XML manipulation, as the target is not an attribute of a model element", "type": "CombineArchiveExecutionError" @@ -1373,7 +1373,7 @@ "output": "", "sedDocuments": [ { - "duration": 3.014484, + "duration": 2.760737, "exception": { "message": "The SED document did not execute successfully:\n\n Could not load MassModel '_30356330_Theinmozhi_PDL1_TCR_regulation'\n\n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] cannot be changed by XML manipulation, as the target is not an attribute of a model element", "type": "SedmlExecutionError" @@ -1388,7 +1388,7 @@ "status": "SKIPPED" } ], - "duration": 0.279203, + "duration": 0.24384, "exception": null, "id": "plot_6_task2", "output": "", @@ -1402,7 +1402,7 @@ "status": "SKIPPED" } ], - "duration": 0.115149, + "duration": 0.104923, "exception": null, "id": "plot_7_task2", "output": "", @@ -1420,7 +1420,7 @@ "status": "SKIPPED" } ], - "duration": 0.119025, + "duration": 0.10428, "exception": null, "id": "plot_8_task2", "output": "", @@ -1434,7 +1434,7 @@ "status": "SKIPPED" } ], - "duration": 0.118494, + "duration": 0.106551, "exception": null, "id": "plot_9_task2", "output": "", @@ -1448,7 +1448,7 @@ "status": "SKIPPED" } ], - "duration": 0.11552, + "duration": 0.1105, "exception": null, "id": "plot_10_task2", "output": "", @@ -1938,7 +1938,7 @@ "status": "SKIPPED" } ], - "duration": 0.059872, + "duration": 0.055107, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -1951,7 +1951,7 @@ "tasks": [ { "algorithm": null, - "duration": 0.504816, + "duration": 0.46494, "exception": { "message": "Could not load MassModel '_30356330_Theinmozhi_PDL1_TCR_regulation'", "type": "MassSimulationError" @@ -1964,7 +1964,7 @@ }, { "algorithm": null, - "duration": 0.044124, + "duration": 0.042945, "exception": { "message": "target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] cannot be changed by XML manipulation, as the target is not an attribute of a model element", "type": "NotImplementedError" @@ -1984,11 +1984,11 @@ }, "netpyne": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc664ef911d5d45259ad4", - "download": "https://api.biosimulations.org/results/674dc664ef911d5d45259ad4/download", - "logs": "https://api.biosimulations.org/logs/674dc664ef911d5d45259ad4?includeOutput=true", + "view": "https://api.biosimulations.org/runs/675999fdc3054f763d5859af", + "download": "https://api.biosimulations.org/results/675999fdc3054f763d5859af/download", + "logs": "https://api.biosimulations.org/logs/675999fdc3054f763d5859af?includeOutput=true", "log_yml": { - "duration": 0.060705, + "duration": 0.077607, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -2001,11 +2001,11 @@ }, "neuron": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc665261553b9bc253eb4", - "download": "https://api.biosimulations.org/results/674dc665261553b9bc253eb4/download", - "logs": "https://api.biosimulations.org/logs/674dc665261553b9bc253eb4?includeOutput=true", + "view": "https://api.biosimulations.org/runs/675999ff707aa64104620db2", + "download": "https://api.biosimulations.org/results/675999ff707aa64104620db2/download", + "logs": "https://api.biosimulations.org/logs/675999ff707aa64104620db2?includeOutput=true", "log_yml": { - "duration": 0.061233, + "duration": 0.068771, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -2018,16 +2018,16 @@ }, "opencor": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc667ef911d5d45259ae3", - "download": "https://api.biosimulations.org/results/674dc667ef911d5d45259ae3/download", - "logs": "https://api.biosimulations.org/logs/674dc667ef911d5d45259ae3?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599a019fa297efdca4d3dc", + "download": "https://api.biosimulations.org/results/67599a019fa297efdca4d3dc/download", + "logs": "https://api.biosimulations.org/logs/67599a019fa297efdca4d3dc?includeOutput=true", "log_yml": { - "duration": 0.070162, + "duration": 0.050691, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpmn01a13j/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", + "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmph4d09iiw/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -2035,11 +2035,11 @@ }, "pyneuroml": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc66910bb4455d618766d", - "download": "https://api.biosimulations.org/results/674dc66910bb4455d618766d/download", - "logs": "https://api.biosimulations.org/logs/674dc66910bb4455d618766d?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599a039fa297efdca4d3e7", + "download": "https://api.biosimulations.org/results/67599a039fa297efdca4d3e7/download", + "logs": "https://api.biosimulations.org/logs/67599a039fa297efdca4d3e7?includeOutput=true", "log_yml": { - "duration": 0.078418, + "duration": 0.061951, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -2052,19 +2052,19 @@ }, "pysces": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc66b10bb4455d6187671", - "download": "https://api.biosimulations.org/results/674dc66b10bb4455d6187671/download", - "logs": "https://api.biosimulations.org/logs/674dc66b10bb4455d6187671?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599a059fa297efdca4d3ec", + "download": "https://api.biosimulations.org/results/67599a059fa297efdca4d3ec/download", + "logs": "https://api.biosimulations.org/logs/67599a059fa297efdca4d3ec?includeOutput=true", "log_yml": { - "duration": 5.360377, + "duration": 5.470218, "exception": null, "output": "libtk8.6.so: cannot open shared object file: No such file or directory\r\n\r\nPySCeS defaults to matplotlib's TKagg backend if not specified in the user configuration file, set \"matplotlib_backend = \" \r\nMatplotlib interface loaded (pysces.plt.m)\r\nPitcon routines available\r\nNLEQ2 routines available\r\nSBML support available\r\nYou are using NumPy (2.1.2) with SciPy (1.14.1)\r\nAssimulo CVode available\r\nRateChar is available\r\nParallel scanner is available\r\n\r\nPySCeS environment\r\n******************\r\npysces.model_dir = /home/FCAM/crbmapi/Pysces/psc\r\npysces.output_dir = /home/FCAM/crbmapi/Pysces\r\n\r\n\r\n***********************************************************************\r\n* Welcome to PySCeS (1.2.2) - Python Simulator for Cellular Systems *\r\n* http://pysces.sourceforge.net *\r\n* Copyright(C) B.G. Olivier, J.M. Rohwer, J.-H.S. Hofmeyr, 2004-2024 *\r\n* Triple-J Group for Molecular Cell Physiology *\r\n* Stellenbosch University, ZA and VU University Amsterdam, NL *\r\n* PySCeS is distributed under the PySCeS (BSD style) licence, see *\r\n* LICENCE.txt (supplied with this release) for details *\r\n* Please cite PySCeS with: doi:10.1093/bioinformatics/bti046 *\r\n***********************************************************************\r\n", "sedDocuments": [ { - "duration": 4.704026, + "duration": 4.911505, "exception": null, "location": "Theinmozhi_2018.sedml", - "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 5 plots:\r\n Theinmozhi_2018.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 120 data sets\r\n Plots (5):\r\n plot_10_task2: 1 curves\r\n plot_6_task2: 1 curves\r\n plot_7_task2: 1 curves\r\n plot_8_task2: 2 curves\r\n plot_9_task2: 1 curves\r\n\r\nExecuting SED-ML file 1: Theinmozhi_2018.sedml ...\r\n Found 1 tasks and 6 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_10_task2`\r\n `plot_6_task2`\r\n `plot_7_task2`\r\n `plot_8_task2`\r\n `plot_9_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...Info: single compartment model: locating \"CP2_DP_CP1\" in default compartment\r\nInfo: single compartment model: locating \"CP1_Diss_PD1_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CD28i_P_CD28a\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_DP_CD28i\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_Bd_PI3K\" in default compartment\r\nInfo: single compartment model: locating \"CD3i_P_CD3a\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_DP_CD3i\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_Bd_ZAP70\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70i_P_ZAP70a1\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70a1_P_ZAP70a2\" in default compartment\r\nInfo: single compartment model: locating \"LATi_P_LATa\" in default compartment\r\nInfo: single compartment model: locating \"LATa_Bd_GADS\" in default compartment\r\nInfo: single compartment model: locating \"GADSa_Bd_SLP76\" in default compartment\r\nInfo: single compartment model: locating \"SLP76i_P_SLC76a\" in default compartment\r\nWriting file: /tmp/tmppsz5bkq_.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpf_2pl9st.xml\r\nout: /tmp/tmppsz5bkq_.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmppsz5bkq_.psc loading ..... \r\nParsing file: /tmp/tmppsz5bkq_.psc\r\nWarning: species \"LCKinactive\" (fixed) does not occur in any reaction\r\nWarning: species \"CD3t\" (fixed) does not occur in any reaction\r\nWarning: species \"SLP76t\" (fixed) does not occur in any reaction\r\nWarning: species \"GADSt\" (fixed) does not occur in any reaction\r\nWarning: species \"LATt\" (fixed) does not occur in any reaction\r\nWarning: species \"ZAP70t\" (fixed) does not occur in any reaction\r\nWarning: species \"PI3Kt\" (fixed) does not occur in any reaction\r\nWarning: species \"CD28t\" (fixed) does not occur in any reaction\r\nWarning: species \"CPactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKt\" (fixed) does not occur in any reaction\r\nInfo: \"CD28t\" has been initialised but does not occur in a rate equation\r\nInfo: \"PI3Kt\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LATt\" has been initialised but does not occur in a rate equation\r\nInfo: \"GADSt\" has been initialised but does not occur in a rate equation\r\nInfo: \"SLP76t\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCKinactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"Kdpa_yiya\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_bound\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3z_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD28_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_PI3K_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_ZAP70_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y315\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y93\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y505\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y394\" has been initialised but does not occur in a rate equation\r\nInfo: \"LAT_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_active\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_inactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_switch\" has been initialised but does not occur in a rate equation\r\nInfo: \"ModelValue_0\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 101 points: 0.15407371520996094\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 6 outputs ...\r\n Generating output 1: `plot_6_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `plot_7_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 3: `plot_8_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 4: `plot_9_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 5: `plot_10_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 6: `autogen_report_for_task2` ...", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 5 plots:\r\n Theinmozhi_2018.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 120 data sets\r\n Plots (5):\r\n plot_10_task2: 1 curves\r\n plot_6_task2: 1 curves\r\n plot_7_task2: 1 curves\r\n plot_8_task2: 2 curves\r\n plot_9_task2: 1 curves\r\n\r\nExecuting SED-ML file 1: Theinmozhi_2018.sedml ...\r\n Found 1 tasks and 6 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_10_task2`\r\n `plot_6_task2`\r\n `plot_7_task2`\r\n `plot_8_task2`\r\n `plot_9_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...Info: single compartment model: locating \"CP2_DP_CP1\" in default compartment\r\nInfo: single compartment model: locating \"CP1_Diss_PD1_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CD28i_P_CD28a\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_DP_CD28i\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_Bd_PI3K\" in default compartment\r\nInfo: single compartment model: locating \"CD3i_P_CD3a\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_DP_CD3i\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_Bd_ZAP70\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70i_P_ZAP70a1\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70a1_P_ZAP70a2\" in default compartment\r\nInfo: single compartment model: locating \"LATi_P_LATa\" in default compartment\r\nInfo: single compartment model: locating \"LATa_Bd_GADS\" in default compartment\r\nInfo: single compartment model: locating \"GADSa_Bd_SLP76\" in default compartment\r\nInfo: single compartment model: locating \"SLP76i_P_SLC76a\" in default compartment\r\nWriting file: /tmp/tmpa5k73wcn.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpwxesupkw.xml\r\nout: /tmp/tmpa5k73wcn.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmpa5k73wcn.psc loading ..... \r\nParsing file: /tmp/tmpa5k73wcn.psc\r\nWarning: species \"LCKinactive\" (fixed) does not occur in any reaction\r\nWarning: species \"CD3t\" (fixed) does not occur in any reaction\r\nWarning: species \"SLP76t\" (fixed) does not occur in any reaction\r\nWarning: species \"GADSt\" (fixed) does not occur in any reaction\r\nWarning: species \"LATt\" (fixed) does not occur in any reaction\r\nWarning: species \"ZAP70t\" (fixed) does not occur in any reaction\r\nWarning: species \"PI3Kt\" (fixed) does not occur in any reaction\r\nWarning: species \"CD28t\" (fixed) does not occur in any reaction\r\nWarning: species \"CPactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKt\" (fixed) does not occur in any reaction\r\nInfo: \"CD28t\" has been initialised but does not occur in a rate equation\r\nInfo: \"PI3Kt\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LATt\" has been initialised but does not occur in a rate equation\r\nInfo: \"GADSt\" has been initialised but does not occur in a rate equation\r\nInfo: \"SLP76t\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCKinactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"Kdpa_yiya\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_bound\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3z_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD28_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_PI3K_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_ZAP70_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y315\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y93\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y505\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y394\" has been initialised but does not occur in a rate equation\r\nInfo: \"LAT_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_active\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_inactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_switch\" has been initialised but does not occur in a rate equation\r\nInfo: \"ModelValue_0\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 101 points: 0.16897153854370117\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 6 outputs ...\r\n Generating output 1: `plot_6_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `plot_7_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 3: `plot_8_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 4: `plot_9_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 5: `plot_10_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 6: `autogen_report_for_task2` ...", "outputs": [ { "curves": [ @@ -2073,7 +2073,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.31045, + "duration": 0.32564, "exception": null, "id": "plot_6_task2", "output": "", @@ -2087,7 +2087,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.146464, + "duration": 0.144236, "exception": null, "id": "plot_7_task2", "output": "", @@ -2105,7 +2105,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.17892, + "duration": 0.153901, "exception": null, "id": "plot_8_task2", "output": "", @@ -2119,7 +2119,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.130808, + "duration": 0.128691, "exception": null, "id": "plot_9_task2", "output": "", @@ -2133,7 +2133,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.127922, + "duration": 0.134497, "exception": null, "id": "plot_10_task2", "output": "", @@ -2623,7 +2623,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.196404, + "duration": 0.212811, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -2636,10 +2636,10 @@ "tasks": [ { "algorithm": null, - "duration": 3.152147, + "duration": 3.218214, "exception": null, "id": "task2", - "output": "Check SBML support is at action level 2\r\nSBML file is L2V4\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmphhfyi34z.xml\r\n*******************************************************************\r\n\r\nParameter units ignored for parameters:\r\n['Kdpa_yiya', 'Kdpi_yi', 'Kdpi_yiya', 'Kdpa_ya', 'Kdpa_pi', 'Kpi_i', 'Kpi_ya', 'Kpa_i', 'Kpa_yi', 'Kp_pd1', 'KMp_pd1', 'Ka_shp', 'Kd1_shp', 'Kd2_shp', 'Kdp_cp2', 'Kp_cd28', 'KMp_cd28', 'Kdp_cd28', 'KMdp_cd28', 'Ka_pi3k', 'Kd_pi3k', 'Kp_cd3', 'KMp_cd3', 'Kdp_cd3', 'KMdp_cd3', 'Ka_zap', 'Kd_zap', 'Kp1_zap', 'Kp2_zap', 'Kp_lat', 'Ka_gads', 'Kd_gads', 'Ka_slp', 'Kd_slp', 'Kp_slp', 'perc_SHP2_bound'] \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"LCK_P_LCKyi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCK_P_LCKya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_P_LCKyiya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_P_LCKpi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKya\" in default compartment\r\nInfo: single compartment model: locating \"LCKpi_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"PD1_P_PD1p1_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_P_PD1p2_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"PD1p2_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CP2_Diss_SHP2_PD1p1\" in default compartment\r\nInfo: single compartment model: locating \"CP2_DP_CP1\" in default compartment\r\nInfo: single compartment model: locating \"CP1_Diss_PD1_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CD28i_P_CD28a\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_DP_CD28i\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_Bd_PI3K\" in default compartment\r\nInfo: single compartment model: locating \"CD3i_P_CD3a\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_DP_CD3i\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_Bd_ZAP70\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70i_P_ZAP70a1\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70a1_P_ZAP70a2\" in default compartment\r\nInfo: single compartment model: locating \"LATi_P_LATa\" in default compartment\r\nInfo: single compartment model: locating \"LATa_Bd_GADS\" in default compartment\r\nInfo: single compartment model: locating \"GADSa_Bd_SLP76\" in default compartment\r\nInfo: single compartment model: locating \"SLP76i_P_SLC76a\" in default compartment\r\nWriting file: /tmp/tmpq4zmjtzv.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmphhfyi34z.xml\r\nout: /tmp/tmpq4zmjtzv.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmpq4zmjtzv.psc loading ..... \r\nParsing file: /tmp/tmpq4zmjtzv.psc\r\nWarning: species \"LCKinactive\" (fixed) does not occur in any reaction\r\nWarning: species \"CD3t\" (fixed) does not occur in any reaction\r\nWarning: species \"SLP76t\" (fixed) does not occur in any reaction\r\nWarning: species \"GADSt\" (fixed) does not occur in any reaction\r\nWarning: species \"LATt\" (fixed) does not occur in any reaction\r\nWarning: species \"ZAP70t\" (fixed) does not occur in any reaction\r\nWarning: species \"PI3Kt\" (fixed) does not occur in any reaction\r\nWarning: species \"CD28t\" (fixed) does not occur in any reaction\r\nWarning: species \"CPactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKt\" (fixed) does not occur in any reaction\r\nInfo: \"CD28t\" has been initialised but does not occur in a rate equation\r\nInfo: \"PI3Kt\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LATt\" has been initialised but does not occur in a rate equation\r\nInfo: \"GADSt\" has been initialised but does not occur in a rate equation\r\nInfo: \"SLP76t\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCKinactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"Kdpa_yiya\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_bound\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3z_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD28_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_PI3K_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_ZAP70_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y315\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y93\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y505\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y394\" has been initialised but does not occur in a rate equation\r\nInfo: \"LAT_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_active\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_inactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_switch\" has been initialised but does not occur in a rate equation\r\nInfo: \"ModelValue_0\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 101 points: 0.17607879638671875\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmpf_2pl9st.xml\r\n*******************************************************************\r\n\r\nParameter units ignored for parameters:\r\n['Kdpa_yiya', 'Kdpi_yi', 'Kdpi_yiya', 'Kdpa_ya', 'Kdpa_pi', 'Kpi_i', 'Kpi_ya', 'Kpa_i', 'Kpa_yi', 'Kp_pd1', 'KMp_pd1', 'Ka_shp', 'Kd1_shp', 'Kd2_shp', 'Kdp_cp2', 'Kp_cd28', 'KMp_cd28', 'Kdp_cd28', 'KMdp_cd28', 'Ka_pi3k', 'Kd_pi3k', 'Kp_cd3', 'KMp_cd3', 'Kdp_cd3', 'KMdp_cd3', 'Ka_zap', 'Kd_zap', 'Kp1_zap', 'Kp2_zap', 'Kp_lat', 'Ka_gads', 'Kd_gads', 'Ka_slp', 'Kd_slp', 'Kp_slp', 'perc_SHP2_bound'] \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"LCK_P_LCKyi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCK_P_LCKya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_P_LCKyiya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_P_LCKpi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKya\" in default compartment\r\nInfo: single compartment model: locating \"LCKpi_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"PD1_P_PD1p1_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_P_PD1p2_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"PD1p2_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CP2_Diss_SHP2_PD1p1\" in default compartment\r\n", + "output": "Check SBML support is at action level 2\r\nSBML file is L2V4\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmpuap7ro2k.xml\r\n*******************************************************************\r\n\r\nParameter units ignored for parameters:\r\n['Kdpa_yiya', 'Kdpi_yi', 'Kdpi_yiya', 'Kdpa_ya', 'Kdpa_pi', 'Kpi_i', 'Kpi_ya', 'Kpa_i', 'Kpa_yi', 'Kp_pd1', 'KMp_pd1', 'Ka_shp', 'Kd1_shp', 'Kd2_shp', 'Kdp_cp2', 'Kp_cd28', 'KMp_cd28', 'Kdp_cd28', 'KMdp_cd28', 'Ka_pi3k', 'Kd_pi3k', 'Kp_cd3', 'KMp_cd3', 'Kdp_cd3', 'KMdp_cd3', 'Ka_zap', 'Kd_zap', 'Kp1_zap', 'Kp2_zap', 'Kp_lat', 'Ka_gads', 'Kd_gads', 'Ka_slp', 'Kd_slp', 'Kp_slp', 'perc_SHP2_bound'] \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"LCK_P_LCKyi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCK_P_LCKya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_P_LCKyiya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_P_LCKpi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKya\" in default compartment\r\nInfo: single compartment model: locating \"LCKpi_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"PD1_P_PD1p1_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_P_PD1p2_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"PD1p2_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CP2_Diss_SHP2_PD1p1\" in default compartment\r\nInfo: single compartment model: locating \"CP2_DP_CP1\" in default compartment\r\nInfo: single compartment model: locating \"CP1_Diss_PD1_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CD28i_P_CD28a\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_DP_CD28i\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_Bd_PI3K\" in default compartment\r\nInfo: single compartment model: locating \"CD3i_P_CD3a\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_DP_CD3i\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_Bd_ZAP70\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70i_P_ZAP70a1\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70a1_P_ZAP70a2\" in default compartment\r\nInfo: single compartment model: locating \"LATi_P_LATa\" in default compartment\r\nInfo: single compartment model: locating \"LATa_Bd_GADS\" in default compartment\r\nInfo: single compartment model: locating \"GADSa_Bd_SLP76\" in default compartment\r\nInfo: single compartment model: locating \"SLP76i_P_SLC76a\" in default compartment\r\nWriting file: /tmp/tmpym7tk6hm.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpuap7ro2k.xml\r\nout: /tmp/tmpym7tk6hm.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmpym7tk6hm.psc loading ..... \r\nParsing file: /tmp/tmpym7tk6hm.psc\r\nWarning: species \"LCKinactive\" (fixed) does not occur in any reaction\r\nWarning: species \"CD3t\" (fixed) does not occur in any reaction\r\nWarning: species \"SLP76t\" (fixed) does not occur in any reaction\r\nWarning: species \"GADSt\" (fixed) does not occur in any reaction\r\nWarning: species \"LATt\" (fixed) does not occur in any reaction\r\nWarning: species \"ZAP70t\" (fixed) does not occur in any reaction\r\nWarning: species \"PI3Kt\" (fixed) does not occur in any reaction\r\nWarning: species \"CD28t\" (fixed) does not occur in any reaction\r\nWarning: species \"CPactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKt\" (fixed) does not occur in any reaction\r\nInfo: \"CD28t\" has been initialised but does not occur in a rate equation\r\nInfo: \"PI3Kt\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LATt\" has been initialised but does not occur in a rate equation\r\nInfo: \"GADSt\" has been initialised but does not occur in a rate equation\r\nInfo: \"SLP76t\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCKinactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"Kdpa_yiya\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_bound\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3z_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD28_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_PI3K_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_ZAP70_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y315\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y93\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y505\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y394\" has been initialised but does not occur in a rate equation\r\nInfo: \"LAT_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_active\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_inactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_switch\" has been initialised but does not occur in a rate equation\r\nInfo: \"ModelValue_0\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 101 points: 0.18651652336120605\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmpwxesupkw.xml\r\n*******************************************************************\r\n\r\nParameter units ignored for parameters:\r\n['Kdpa_yiya', 'Kdpi_yi', 'Kdpi_yiya', 'Kdpa_ya', 'Kdpa_pi', 'Kpi_i', 'Kpi_ya', 'Kpa_i', 'Kpa_yi', 'Kp_pd1', 'KMp_pd1', 'Ka_shp', 'Kd1_shp', 'Kd2_shp', 'Kdp_cp2', 'Kp_cd28', 'KMp_cd28', 'Kdp_cd28', 'KMdp_cd28', 'Ka_pi3k', 'Kd_pi3k', 'Kp_cd3', 'KMp_cd3', 'Kdp_cd3', 'KMdp_cd3', 'Ka_zap', 'Kd_zap', 'Kp1_zap', 'Kp2_zap', 'Kp_lat', 'Ka_gads', 'Kd_gads', 'Ka_slp', 'Kd_slp', 'Kp_slp', 'perc_SHP2_bound'] \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"LCK_P_LCKyi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCK_P_LCKya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_P_LCKyiya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_P_LCKpi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKya\" in default compartment\r\nInfo: single compartment model: locating \"LCKpi_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"PD1_P_PD1p1_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_P_PD1p2_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"PD1p2_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CP2_Diss_SHP2_PD1p1\" in default compartment\r\n", "simulatorDetails": null, "skipReason": null, "status": "SUCCEEDED" @@ -2653,11 +2653,11 @@ }, "rbapy": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc66def911d5d45259af7", - "download": "https://api.biosimulations.org/results/674dc66def911d5d45259af7/download", - "logs": "https://api.biosimulations.org/logs/674dc66def911d5d45259af7?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599a079fa297efdca4d3f3", + "download": "https://api.biosimulations.org/results/67599a079fa297efdca4d3f3/download", + "logs": "https://api.biosimulations.org/logs/67599a079fa297efdca4d3f3?includeOutput=true", "log_yml": { - "duration": 0.251659, + "duration": 0.269646, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -2670,11 +2670,11 @@ }, "smoldyn": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc66f10bb4455d6187678", - "download": "https://api.biosimulations.org/results/674dc66f10bb4455d6187678/download", - "logs": "https://api.biosimulations.org/logs/674dc66f10bb4455d6187678?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599a09c3054f763d585a0e", + "download": "https://api.biosimulations.org/results/67599a09c3054f763d585a0e/download", + "logs": "https://api.biosimulations.org/logs/67599a09c3054f763d585a0e?includeOutput=true", "log_yml": { - "duration": 0.062385, + "duration": 0.059965, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -2687,16 +2687,16 @@ }, "tellurium": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc67110bb4455d6187681", - "download": "https://api.biosimulations.org/results/674dc67110bb4455d6187681/download", - "logs": "https://api.biosimulations.org/logs/674dc67110bb4455d6187681?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599a0b707aa64104620de0", + "download": "https://api.biosimulations.org/results/67599a0b707aa64104620de0/download", + "logs": "https://api.biosimulations.org/logs/67599a0b707aa64104620de0?includeOutput=true", "log_yml": { - "duration": 3.978802, + "duration": 4.095218, "exception": null, "output": "", "sedDocuments": [ { - "duration": 3.347017, + "duration": 3.452619, "exception": null, "location": "Theinmozhi_2018.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 5 plots:\r\n Theinmozhi_2018.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 120 data sets\r\n Plots (5):\r\n plot_10_task2: 1 curves\r\n plot_6_task2: 1 curves\r\n plot_7_task2: 1 curves\r\n plot_8_task2: 2 curves\r\n plot_9_task2: 1 curves\r\n\r\nExecuting SED-ML file 1: Theinmozhi_2018.sedml ...\r\n Found 2 tasks and 6 outputs:\r\n Tasks:\r\n `task1`\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_10_task2`\r\n `plot_6_task2`\r\n `plot_7_task2`\r\n `plot_8_task2`\r\n `plot_9_task2`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 6 outputs ...\r\n Generating output 1: `plot_6_task2` ... \u001b[36mqueued\u001b[0m\r\n Generating output 2: `plot_7_task2` ... \u001b[36mqueued\u001b[0m\r\n Generating output 3: `plot_8_task2` ... \u001b[36mqueued\u001b[0m\r\n Generating output 4: `plot_9_task2` ... \u001b[36mqueued\u001b[0m\r\n Generating output 5: `plot_10_task2` ... \u001b[36mqueued\u001b[0m\r\n Generating output 6: `autogen_report_for_task2` ... \u001b[36mqueued\u001b[0m\r\n Executing task 2: `task2`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 6 outputs ...\r\n Generating output 1: `plot_6_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `plot_7_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 3: `plot_8_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 4: `plot_9_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 5: `plot_10_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 6: `autogen_report_for_task2` ...", @@ -2708,7 +2708,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.139389, + "duration": 0.145862, "exception": null, "id": "plot_6_task2", "output": "", @@ -2722,7 +2722,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.143154, + "duration": 0.156146, "exception": null, "id": "plot_7_task2", "output": "", @@ -2740,7 +2740,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.148739, + "duration": 0.163612, "exception": null, "id": "plot_8_task2", "output": "", @@ -2754,7 +2754,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.138961, + "duration": 0.136252, "exception": null, "id": "plot_9_task2", "output": "", @@ -2768,7 +2768,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.144982, + "duration": 0.143398, "exception": null, "id": "plot_10_task2", "output": "", @@ -3258,7 +3258,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.213115, + "duration": 0.221477, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -3271,7 +3271,7 @@ "tasks": [ { "algorithm": "KISAO_0000019", - "duration": 0.377119, + "duration": 0.386098, "exception": null, "id": "task1", "output": "", @@ -3338,7 +3338,7 @@ }, { "algorithm": null, - "duration": 0.322538, + "duration": 0.335437, "exception": null, "id": "task2", "output": "", @@ -3355,9 +3355,9 @@ }, "vcell": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc674261553b9bc253ed9", - "download": "https://api.biosimulations.org/results/674dc674261553b9bc253ed9/download", - "logs": "https://api.biosimulations.org/logs/674dc674261553b9bc253ed9?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599a0e9fa297efdca4d411", + "download": "https://api.biosimulations.org/results/67599a0e9fa297efdca4d411/download", + "logs": "https://api.biosimulations.org/logs/67599a0e9fa297efdca4d411?includeOutput=true", "log_yml": { "duration": 15, "exception": null, @@ -3966,11 +3966,11 @@ }, "xpp": { "response": 201, - "view": 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b/BioModels/BIOMD0000001077/tests/d1_plots_remote/tellurium_plot_2_task2.pdf index 590ebeea667cfa69fd7adb259fca778120ac2b1f..c830c6bdee19fb6009c60dff16e4a800042e17f5 100644 GIT binary patch delta 21 ccmbQ1GA(7pe_akkLjy|#0|TSY?0Wnx09Y0VVE_OC delta 21 ccmbQ1GA(7pe_aj(BLhnlBLnlz?0Wnx09a=RYybcN diff --git a/BioModels/BIOMD0000001077/tests/d1_plots_remote/vcell_plot_2_task2.pdf b/BioModels/BIOMD0000001077/tests/d1_plots_remote/vcell_plot_2_task2.pdf index 445324b9a2a6ae99af4f8777104df3297a1a37e6..74ec64314f44020862944add2d05ec115003b42a 100644 GIT binary patch delta 21 dcmcbWd@FgwbzKfaLjy|#14E0=_jP|W0{~@j2#5dx delta 21 dcmcbWd@FgwbzKevBLhnlBSX{8_jP|W0{~@^2#Wv! diff --git a/BioModels/BIOMD0000001077/tests/results_compatibility_biosimulators.md b/BioModels/BIOMD0000001077/tests/results_compatibility_biosimulators.md index e403e10e..681fe5ac 100644 --- a/BioModels/BIOMD0000001077/tests/results_compatibility_biosimulators.md +++ b/BioModels/BIOMD0000001077/tests/results_compatibility_biosimulators.md @@ -1,23 +1,23 @@ | Engine | Compatibility | pass / FAIL (R) | pass / FAIL (L) | d1 (R) | d1 (L) | |:-------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------|:-------------------------------------------------------------| -|
AMICIhttps://docs.biosimulators.org/Biosimulators_AMICI/

|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with AMICI.

SED-ML and SBML are compatible with AMICI.
|
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element

ERROR TYPE:
CombineArchiveExecutionError
|
❌ FAILERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element

ERROR TYPE:
CombineArchiveExecutionError
| plot | plot | -|
BioNetGenhttps://docs.biosimulators.org/Biosimulators_BioNetGen/
|
⚠ XFAILEXPECTED FAIL

Only BNGL, SED-ML are compatible with BioNetGen.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
BoolNethttps://docs.biosimulators.org/Biosimulators_BoolNet/
|
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with BoolNet.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
Brian 2https://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with Brian 2.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
CBMPyhttps://docs.biosimulators.org/Biosimulators_CBMPy/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with CBMPy.

SED-ML and SBML are compatible with CBMPy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
COBRApyhttps://docs.biosimulators.org/Biosimulators_COBRApy/
Only allows steady state simulations
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COBRApy.

SED-ML and SBML are compatible with COBRApy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
COPASIhttps://docs.biosimulators.org/Biosimulators_COPASI/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COPASI.

SED-ML and SBML are compatible with COPASI.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | -|
GillesPy2https://docs.biosimulators.org/Biosimulators_GillesPy2/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with GillesPy2.

SED-ML and SBML are compatible with GillesPy2.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
GINsimhttps://docs.biosimulators.org/Biosimulators_GINsim/
|
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with GINsim.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
LibSBMLSimhttps://docs.biosimulators.org/Biosimulators_LibSBMLSim/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with LibSBMLSim.

SED-ML and SBML are compatible with LibSBMLSim.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
MASSpyhttps://docs.biosimulators.org/Biosimulators_MASSpy/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with MASSpy.

SED-ML and SBML are compatible with MASSpy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Could not load MassModel 'Adlung2021___Cell_to_cell_variability_in_JAK2_STAT5_pathway'

target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] cannot be changed by XML manipulation, as the target is not an attribute of a model element

ERROR TYPE:
CombineArchiveExecutionError
|
❌ FAILERROR MESSAGE:
`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| plot | | -|
NetPyNEhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NetPyNE.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
NEURONhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NEURON.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
OpenCORhttps://docs.biosimulators.org/Biosimulators_OpenCOR/
|
⚠ XFAILEXPECTED FAIL

Only CellML, SED-ML are compatible with OpenCOR.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
pyNeuroMLhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with pyNeuroML.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | -|
PySCeShttps://docs.biosimulators.org/Biosimulators_PySCeS/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with PySCeS.

SED-ML and SBML are compatible with PySCeS.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | -|
RBApyhttps://docs.biosimulators.org/Biosimulators_RBApy/
|
⚠ XFAILEXPECTED FAIL

Only RBApy, SED-ML are compatible with RBApy.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | -|
Smoldynhttps://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api
|
⚠ XFAILEXPECTED FAIL

Only Smoldyn, SED-ML are compatible with Smoldyn.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
Error unknown. The log.yml containing error information was not found.

| | | -|
Telluriumhttps://docs.biosimulators.org/Biosimulators_tellurium/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with Tellurium.

SED-ML and SBML are compatible with Tellurium.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | -|
VCellhttps://github.com/virtualcell/vcell
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with VCell.

BNGL, SED-ML and SBML are compatible with VCell.
|
✅ PASSview
download
logs

|
❌ FAILERROR MESSAGE:
Runtime Exception

| plot | | -|
XPPhttps://docs.biosimulators.org/Biosimulators_XPP/
|
⚠ XFAILEXPECTED FAIL

Only XPP, SED-ML are compatible with XPP.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | \ No newline at end of file +|
AMICIhttps://docs.biosimulators.org/Biosimulators_AMICI/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with AMICI.

SBML and SED-ML are compatible with AMICI.
|
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element

ERROR TYPE:
CombineArchiveExecutionError
|
❌ FAILERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element

ERROR TYPE:
CombineArchiveExecutionError
| plot | plot | +|
BioNetGenhttps://docs.biosimulators.org/Biosimulators_BioNetGen/
|
⚠ XFAILEXPECTED FAIL

Only BNGL, SED-ML are compatible with BioNetGen.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
BoolNethttps://docs.biosimulators.org/Biosimulators_BoolNet/
|
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with BoolNet.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
Brian 2https://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with Brian 2.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
CBMPyhttps://docs.biosimulators.org/Biosimulators_CBMPy/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with CBMPy.

SBML and SED-ML are compatible with CBMPy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
COBRApyhttps://docs.biosimulators.org/Biosimulators_COBRApy/
Only allows steady state simulations
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COBRApy.

SBML and SED-ML are compatible with COBRApy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
COPASIhttps://docs.biosimulators.org/Biosimulators_COPASI/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COPASI.

SBML and SED-ML are compatible with COPASI.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | +|
GillesPy2https://docs.biosimulators.org/Biosimulators_GillesPy2/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with GillesPy2.

SBML and SED-ML are compatible with GillesPy2.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
GINsimhttps://docs.biosimulators.org/Biosimulators_GINsim/
|
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with GINsim.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
LibSBMLSimhttps://docs.biosimulators.org/Biosimulators_LibSBMLSim/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with LibSBMLSim.

SBML and SED-ML are compatible with LibSBMLSim.
|
❌ FAILview
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
❌ FAILERROR MESSAGE:
`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
MASSpyhttps://docs.biosimulators.org/Biosimulators_MASSpy/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with MASSpy.

SBML and SED-ML are compatible with MASSpy.
|
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Could not load MassModel 'Adlung2021___Cell_to_cell_variability_in_JAK2_STAT5_pathway'

target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] cannot be changed by XML manipulation, as the target is not an attribute of a model element

ERROR TYPE:
CombineArchiveExecutionError
|
❌ FAILERROR MESSAGE:
`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| plot | | +|
NetPyNEhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NetPyNE.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
NEURONhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NEURON.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
OpenCORhttps://docs.biosimulators.org/Biosimulators_OpenCOR/
|
⚠ XFAILEXPECTED FAIL

Only CellML, SED-ML are compatible with OpenCOR.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
pyNeuroMLhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
|
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with pyNeuroML.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | +|
PySCeShttps://docs.biosimulators.org/Biosimulators_PySCeS/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with PySCeS.

SBML and SED-ML are compatible with PySCeS.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | +|
RBApyhttps://docs.biosimulators.org/Biosimulators_RBApy/
|
⚠ XFAILEXPECTED FAIL

Only RBApy, SED-ML are compatible with RBApy.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
- The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
- Simulation `sim1` is invalid.
- Algorithm has an invalid KiSAO id `KISAO_0000694`.

ERROR TYPE:
ValueError
| | | +|
Smoldynhttps://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api
|
⚠ XFAILEXPECTED FAIL

Only Smoldyn, SED-ML are compatible with Smoldyn.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
Error unknown. The log.yml containing error information was not found.

| | | +|
Telluriumhttps://docs.biosimulators.org/Biosimulators_tellurium/
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with Tellurium.

SBML and SED-ML are compatible with Tellurium.
|
✅ PASSview
download
logs

| ✅ PASS | plot | plot | +|
VCellhttps://github.com/virtualcell/vcell
|
❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with VCell.

SBML, SED-ML and BNGL are compatible with VCell.
|
✅ PASSview
download
logs

|
❌ FAILERROR MESSAGE:
Runtime Exception

| plot | | +|
XPPhttps://docs.biosimulators.org/Biosimulators_XPP/
|
⚠ XFAILEXPECTED FAIL

Only XPP, SED-ML are compatible with XPP.
|
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
|
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
| | | \ No newline at end of file diff --git a/BioModels/BIOMD0000001077/tests/results_local.json b/BioModels/BIOMD0000001077/tests/results_local.json index c3ea3529..bf4877d0 100644 --- a/BioModels/BIOMD0000001077/tests/results_local.json +++ b/BioModels/BIOMD0000001077/tests/results_local.json @@ -2,7 +2,7 @@ "amici": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/amici' returned non-zero exit status 1", "log_yml": { - "duration": 19.877325, + "duration": 17.785899, "exception": { "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element", "type": "CombineArchiveExecutionError" @@ -10,7 +10,7 @@ "output": "", "sedDocuments": [ { - "duration": 19.468539, + "duration": 17.28622, "exception": { "message": "The SED document did not execute successfully:\n\n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element", "type": "SedmlExecutionError" @@ -29,7 +29,7 @@ "status": "SKIPPED" } ], - "duration": 0.224991, + "duration": 0.148086, "exception": null, "id": "plot_2_task2", "output": "", @@ -323,7 +323,7 @@ "status": "SKIPPED" } ], - "duration": 0.07207, + "duration": 0.048225, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -336,7 +336,7 @@ "tasks": [ { "algorithm": "KISAO_0000496", - "duration": 18.465958, + "duration": 16.310881, "exception": null, "id": "task1", "output": "", @@ -359,7 +359,7 @@ }, { "algorithm": null, - "duration": 0.050769, + "duration": 0.037232, "exception": { "message": "target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element", "type": "ValueError" @@ -381,12 +381,12 @@ "brian2": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/brian2' returned non-zero exit status 1", "log_yml": { - "duration": 0.055226, + "duration": 0.052248, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "WARNING /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpe0rhutg5/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n [py.warnings]\r\npyNeuroML >>> WARNING - /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpe0rhutg5/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n\r\n", + "output": "WARNING /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp_m18o8nr/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n [py.warnings]\r\npyNeuroML >>> WARNING - /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp_m18o8nr/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -396,12 +396,12 @@ "bionetgen": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/bionetgen' returned non-zero exit status 1", "log_yml": { - "duration": 0.168358, + "duration": 0.137988, "exception": { "message": "`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmph3rp0u03/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpks79islx/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -411,12 +411,12 @@ "boolnet": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/boolnet' returned non-zero exit status 1", "log_yml": { - "duration": 0.177739, + "duration": 0.159315, "exception": { "message": "`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp3ztexqvf/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmplh13wniy/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -426,12 +426,12 @@ "cbmpy": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/cbmpy' returned non-zero exit status 1", "log_yml": { - "duration": 0.241068, + "duration": 0.26858, "exception": { "message": "`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "\r\nINFO: No xlwt module available, Excel spreadsheet creation disabled\r\n\r\n\r\n\r\nNo module named 'cplex'\r\n\r\n\r\n\r\nCPLEX not available\r\n\r\n*****\r\nUsing GLPK\r\n*****\r\n\r\n\r\nINFO: No xlrd module available, Excel spreadsheet reading disabled\r\n\r\nCBMPy environment\r\n******************\r\nRevision: r689\r\n\r\n\r\n***********************************************************************\r\n* Welcome to CBMPy (0.7.25) - PySCeS Constraint Based Modelling *\r\n* http://cbmpy.sourceforge.net *\r\n* Copyright(C) Brett G. Olivier 2014 - 2019 *\r\n* Dept. of Systems Bioinformatics *\r\n* Vrije Universiteit Amsterdam, Amsterdam, The Netherlands *\r\n* CBMPy is developed as part of the BeBasic MetaToolKit Project *\r\n* Distributed under the GNU GPL v 3.0 licence, see *\r\n* LICENCE (supplied with this release) for details *\r\n***********************************************************************\r\n\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpqh1x7s4u/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "\r\nINFO: No xlwt module available, Excel spreadsheet creation disabled\r\n\r\n\r\n\r\nNo module named 'cplex'\r\n\r\n\r\n\r\nCPLEX not available\r\n\r\n*****\r\nUsing GLPK\r\n*****\r\n\r\n\r\nINFO: No xlrd module available, Excel spreadsheet reading disabled\r\n\r\nCBMPy environment\r\n******************\r\nRevision: r689\r\n\r\n\r\n***********************************************************************\r\n* Welcome to CBMPy (0.7.25) - PySCeS Constraint Based Modelling *\r\n* http://cbmpy.sourceforge.net *\r\n* Copyright(C) Brett G. Olivier 2014 - 2019 *\r\n* Dept. of Systems Bioinformatics *\r\n* Vrije Universiteit Amsterdam, Amsterdam, The Netherlands *\r\n* CBMPy is developed as part of the BeBasic MetaToolKit Project *\r\n* Distributed under the GNU GPL v 3.0 licence, see *\r\n* LICENCE (supplied with this release) for details *\r\n***********************************************************************\r\n\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp22wzcvia/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -441,12 +441,12 @@ "cobrapy": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/cobrapy' returned non-zero exit status 1", "log_yml": { - "duration": 0.28623, + "duration": 0.147205, "exception": { "message": "`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpio8mhijs/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpiz5mg1kj/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -456,12 +456,12 @@ "copasi": { "exception_message": "", "log_yml": { - "duration": 1.598433, + "duration": 2.022621, "exception": null, - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp8th35q9z/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp8th35q9z/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpa2anhv2z/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpa2anhv2z/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [ { - "duration": 1.225818, + "duration": 1.368904, "exception": null, "location": "Adlung2021 _model_jakstat_pa.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 1 plots:\r\n Adlung2021 _model_jakstat_pa.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 71 data sets\r\n Plots (1):\r\n plot_2_task2: 2 curves\r\n\r\nExecuting SED-ML file 1: Adlung2021 _model_jakstat_pa.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_2_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `plot_2_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_report_for_task2` ...", @@ -477,7 +477,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.419649, + "duration": 0.476091, "exception": null, "id": "plot_2_task2", "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", @@ -771,7 +771,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.276758, + "duration": 0.230617, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -784,10 +784,10 @@ "tasks": [ { "algorithm": null, - "duration": 0.293335, + "duration": 0.249847, "exception": null, "id": "task2", - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmp8th35q9z/tmp9g246j9k.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'LSODA/LSODAR hybrid method' (KISAO_0000560) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmp8th35q9z/tmpq117yqur.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmpa2anhv2z/tmphf0estil.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'LSODA/LSODAR hybrid method' (KISAO_0000560) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmpa2anhv2z/tmpwdz5sddy.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "simulatorDetails": null, "skipReason": null, "status": "SUCCEEDED" @@ -803,12 +803,12 @@ "gillespy2": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/gillespy2' returned non-zero exit status 1", "log_yml": { - "duration": 0.179067, + "duration": 0.126215, "exception": { "message": "`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpg4zwjpv2/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmppneo74a6/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -818,12 +818,12 @@ "ginsim": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/ginsim' returned non-zero exit status 1", "log_yml": { - "duration": 0.182057, + "duration": 0.198952, "exception": { "message": "`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpa7t2lxxp/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp02h0mra6/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -833,12 +833,12 @@ "libsbmlsim": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/libsbmlsim' returned non-zero exit status 1", "log_yml": { - "duration": 0.17365, + "duration": 0.133337, "exception": { "message": "`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpc5gfiv71/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpd_i8q2kk/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -848,12 +848,12 @@ "masspy": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/masspy' returned non-zero exit status 1", "log_yml": { - "duration": 0.190694, + "duration": 0.147529, "exception": { "message": "`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mSedmlFeatureNotSupportedWarning\u001b[0m: \u001b[33m`/tmp/tmp6thjs41z/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mSedmlFeatureNotSupportedWarning\u001b[0m: \u001b[33m`/tmp/tmpj1b6_q1e/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -863,7 +863,7 @@ "netpyne": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/netpyne' returned non-zero exit status 1", "log_yml": { - "duration": 0.068732, + "duration": 0.047935, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -878,12 +878,12 @@ "neuron": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/neuron' returned non-zero exit status 1", "log_yml": { - "duration": 0.051391, + "duration": 0.078667, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpo0_8uk4z/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpo50398u3/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -893,12 +893,12 @@ "opencor": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/opencor' returned non-zero exit status 1", "log_yml": { - "duration": 0.082354, + "duration": 0.059243, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpsr8mlzqf/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", + "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp6cnr7usi/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -908,12 +908,12 @@ "pyneuroml": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/pyneuroml' returned non-zero exit status 1", "log_yml": { - "duration": 0.048488, + "duration": 0.062084, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpsteg234i/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpdc7w6h6b/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -923,15 +923,15 @@ "pysces": { "exception_message": "", "log_yml": { - "duration": 1.871207, + "duration": 1.887471, "exception": null, - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpva5tuf5m/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpva5tuf5m/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp0yy6362g/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp0yy6362g/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [ { - "duration": 1.505052, + "duration": 1.366739, "exception": null, "location": "Adlung2021 _model_jakstat_pa.sedml", - "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 1 plots:\r\n Adlung2021 _model_jakstat_pa.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 71 data sets\r\n Plots (1):\r\n plot_2_task2: 2 curves\r\n\r\nExecuting SED-ML file 1: Adlung2021 _model_jakstat_pa.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_2_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V4\r\nInfo: multiple compartments defined but reaction v1_v_0 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v2_v_1 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v3_v_2 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v4_v_3 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v5_v_4 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v6_v_5 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v7_v_6 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v8_v_7 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v9_v_8 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v12_v_11 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v13_v_12 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v14_v_13 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v15_v_14 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v16_v_15 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v17_v_16 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v18_v_17 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v19_v_18 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v20_v_19 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v21_v_20 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v22_v_21 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v23_v_22 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v24_v_23 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v25_v_24 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v26_v_25 is not located in any of them.\r\nWriting file: /tmp/tmpf_ofvalt.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpp1_hf3ub.xml\r\nout: /tmp/tmpf_ofvalt.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmpf_ofvalt.psc loading ..... \r\nParsing file: /tmp/tmpf_ofvalt.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"epo_level\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_EpoRJAK2\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_SHP1\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"Total_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"measuralbe_pSTAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"_pSTAT5_Total_STAT5\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 301 points: 0.09762334823608398\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\nInfo: multiple compartments defined but reaction v1_v_0 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v2_v_1 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v3_v_2 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v4_v_3 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v5_v_4 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v6_v_5 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v7_v_6 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v8_v_7 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v9_v_8 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v12_v_11 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v13_v_12 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v14_v_13 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v15_v_14 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v16_v_15 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v17_v_16 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v18_v_17 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v19_v_18 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v20_v_19 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v21_v_20 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v22_v_21 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v23_v_22 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v24_v_23 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v25_v_24 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v26_v_25 is not located in any of them.\r\nWriting file: /tmp/tmpb2_l5eav.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmp9vw1a79a.xml\r\nout: /tmp/tmpb2_l5eav.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmpb2_l5eav.psc loading ..... \r\nParsing file: /tmp/tmpb2_l5eav.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"epo_level\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_EpoRJAK2\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_SHP1\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"Total_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"measuralbe_pSTAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"_pSTAT5_Total_STAT5\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 301 points: 0.038018226623535156\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `plot_2_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_report_for_task2` ...", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 1 plots:\r\n Adlung2021 _model_jakstat_pa.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 71 data sets\r\n Plots (1):\r\n plot_2_task2: 2 curves\r\n\r\nExecuting SED-ML file 1: Adlung2021 _model_jakstat_pa.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_2_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V4\r\nInfo: multiple compartments defined but reaction v1_v_0 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v2_v_1 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v3_v_2 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v4_v_3 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v5_v_4 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v6_v_5 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v7_v_6 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v8_v_7 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v9_v_8 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v12_v_11 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v13_v_12 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v14_v_13 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v15_v_14 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v16_v_15 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v17_v_16 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v18_v_17 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v19_v_18 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v20_v_19 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v21_v_20 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v22_v_21 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v23_v_22 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v24_v_23 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v25_v_24 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v26_v_25 is not located in any of them.\r\nWriting file: /tmp/tmpxfkiprz9.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmphekv5vll.xml\r\nout: /tmp/tmpxfkiprz9.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmpxfkiprz9.psc loading ..... \r\nParsing file: /tmp/tmpxfkiprz9.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"epo_level\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_EpoRJAK2\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_SHP1\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"Total_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"measuralbe_pSTAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"_pSTAT5_Total_STAT5\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 301 points: 0.0694129467010498\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\nInfo: multiple compartments defined but reaction v1_v_0 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v2_v_1 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v3_v_2 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v4_v_3 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v5_v_4 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v6_v_5 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v7_v_6 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v8_v_7 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v9_v_8 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v12_v_11 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v13_v_12 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v14_v_13 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v15_v_14 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v16_v_15 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v17_v_16 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v18_v_17 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v19_v_18 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v20_v_19 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v21_v_20 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v22_v_21 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v23_v_22 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v24_v_23 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v25_v_24 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v26_v_25 is not located in any of them.\r\nWriting file: /tmp/tmpg_9gc_pa.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmp5v3c22wm.xml\r\nout: /tmp/tmpg_9gc_pa.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmpg_9gc_pa.psc loading ..... \r\nParsing file: /tmp/tmpg_9gc_pa.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"epo_level\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_EpoRJAK2\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_SHP1\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"Total_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"measuralbe_pSTAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"_pSTAT5_Total_STAT5\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 301 points: 0.027132749557495117\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `plot_2_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_report_for_task2` ...", "outputs": [ { "curves": [ @@ -944,7 +944,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.27036, + "duration": 0.261819, "exception": null, "id": "plot_2_task2", "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", @@ -1238,7 +1238,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.277095, + "duration": 0.24901, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -1251,10 +1251,10 @@ "tasks": [ { "algorithm": null, - "duration": 0.75718, + "duration": 0.568385, "exception": null, "id": "task2", - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n", "simulatorDetails": null, "skipReason": null, "status": "SUCCEEDED" @@ -1270,12 +1270,12 @@ "rbapy": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/rbapy' returned non-zero exit status 1", "log_yml": { - "duration": 0.167536, + "duration": 0.147269, "exception": { "message": "`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpc2oqdj6t/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpac35die7/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1290,12 +1290,12 @@ "tellurium": { "exception_message": "", "log_yml": { - "duration": 1.615605, + "duration": 2.251039, "exception": null, - "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmplbigyzh_/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmplbigyzh_/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n", + "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmp4j4t4e5h/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmp4j4t4e5h/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n", "sedDocuments": [ { - "duration": 1.046206, + "duration": 1.408548, "exception": null, "location": "Adlung2021 _model_jakstat_pa.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 1 plots:\r\n Adlung2021 _model_jakstat_pa.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 71 data sets\r\n Plots (1):\r\n plot_2_task2: 2 curves\r\n\r\nExecuting SED-ML file 1: Adlung2021 _model_jakstat_pa.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_2_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `plot_2_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_report_for_task2` ...", @@ -1311,7 +1311,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.355131, + "duration": 0.348285, "exception": null, "id": "plot_2_task2", "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning:\r\n\r\n\u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n\r\n", @@ -1605,7 +1605,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.282932, + "duration": 0.344205, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -1618,10 +1618,10 @@ "tasks": [ { "algorithm": null, - "duration": 0.16596, + "duration": 0.16194, "exception": null, "id": "task2", - "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33m- Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmplbigyzh_/./Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning:\r\n\r\n\u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mAlgorithm parameter with KiSAO id 'KISAO_0000216' was ignored because it is not supported. Parameter must have one of the following KiSAO ids:\r\n - KISAO_0000209: relative_tolerance (relative tolerance)\r\n - KISAO_0000211: absolute_tolerance (absolute tolerance)\r\n - KISAO_0000571: absolute_tolerance_adjustment_factor (absolute tolerance adjustment factor)\r\n - KISAO_0000220: maximum_bdf_order (Maximum Backward Differentiation Formula (BDF) order)\r\n - KISAO_0000219: maximum_adams_order (Maximum Adams order)\r\n - KISAO_0000415: maximum_num_steps (Maximum number of steps)\r\n - KISAO_0000467: maximum_time_step (Maximum time step)\r\n - KISAO_0000485: minimum_time_step (Minimum time step)\r\n - KISAO_0000559: initial_time_step (Initial time step)\r\n - KISAO_0000671: stiff (Stiff)\r\n - KISAO_0000670: multiple_steps (Multiple steps)\u001b[0m\r\n\r\n", + "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33m- Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmp4j4t4e5h/./Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning:\r\n\r\n\u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mAlgorithm parameter with KiSAO id 'KISAO_0000216' was ignored because it is not supported. Parameter must have one of the following KiSAO ids:\r\n - KISAO_0000209: relative_tolerance (relative tolerance)\r\n - KISAO_0000211: absolute_tolerance (absolute tolerance)\r\n - KISAO_0000571: absolute_tolerance_adjustment_factor (absolute tolerance adjustment factor)\r\n - KISAO_0000220: maximum_bdf_order (Maximum Backward Differentiation Formula (BDF) order)\r\n - KISAO_0000219: maximum_adams_order (Maximum Adams order)\r\n - KISAO_0000415: maximum_num_steps (Maximum number of steps)\r\n - KISAO_0000467: maximum_time_step (Maximum time step)\r\n - KISAO_0000485: minimum_time_step (Minimum time step)\r\n - KISAO_0000559: initial_time_step (Initial time step)\r\n - KISAO_0000671: stiff (Stiff)\r\n - KISAO_0000670: multiple_steps (Multiple steps)\u001b[0m\r\n\r\n", "simulatorDetails": null, "skipReason": null, "status": "SUCCEEDED" @@ -1637,7 +1637,7 @@ "vcell": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/vcell' returned non-zero exit status 1", "log_yml": { - "duration": 8, + "duration": 6, "exception": null, "output": "Processing Adlung2021 _model_jakstat_pa.sedml. Done", "sedDocuments": [ @@ -2000,12 +2000,12 @@ "xpp": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/xpp' returned non-zero exit status 1", "log_yml": { - "duration": 0.059965, + "duration": 0.112935, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmplzbzn_dl/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpp0y6u9k5/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" diff --git a/BioModels/BIOMD0000001077/tests/results_remote.json b/BioModels/BIOMD0000001077/tests/results_remote.json index e07aa099..f11ed86d 100644 --- a/BioModels/BIOMD0000001077/tests/results_remote.json +++ b/BioModels/BIOMD0000001077/tests/results_remote.json @@ -1,11 +1,11 @@ { "amici": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc70b10bb4455d618775b", - "download": "https://api.biosimulations.org/results/674dc70b10bb4455d618775b/download", - "logs": "https://api.biosimulations.org/logs/674dc70b10bb4455d618775b?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599aaec3054f763d585a9a", + "download": "https://api.biosimulations.org/results/67599aaec3054f763d585a9a/download", + "logs": "https://api.biosimulations.org/logs/67599aaec3054f763d585a9a?includeOutput=true", "log_yml": { - "duration": 33.984144, + "duration": 27.545858, "exception": { "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element", "type": "CombineArchiveExecutionError" @@ -13,7 +13,7 @@ "output": "", "sedDocuments": [ { - "duration": 33.443908, + "duration": 27.158161, "exception": { "message": "The SED document did not execute successfully:\n\n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element", "type": "SedmlExecutionError" @@ -32,7 +32,7 @@ "status": "SKIPPED" } ], - "duration": 0.127863, + "duration": 0.226673, "exception": null, "id": "plot_2_task2", "output": "", @@ -326,7 +326,7 @@ "status": "SKIPPED" } ], - "duration": 0.075044, + "duration": 0.054884, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -339,7 +339,7 @@ "tasks": [ { "algorithm": "KISAO_0000496", - "duration": 32.477096, + "duration": 26.262648, "exception": null, "id": "task1", "output": "", @@ -362,7 +362,7 @@ }, { "algorithm": null, - "duration": 0.048865, + "duration": 0.035781, "exception": { "message": "target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element", "type": "ValueError" @@ -382,11 +382,11 @@ }, "brian2": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc70d261553b9bc253f76", - "download": "https://api.biosimulations.org/results/674dc70d261553b9bc253f76/download", - "logs": "https://api.biosimulations.org/logs/674dc70d261553b9bc253f76?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599ab09fa297efdca4d483", + "download": "https://api.biosimulations.org/results/67599ab09fa297efdca4d483/download", + "logs": "https://api.biosimulations.org/logs/67599ab09fa297efdca4d483?includeOutput=true", "log_yml": { - "duration": 0.057394, + "duration": 0.052158, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -399,11 +399,11 @@ }, "bionetgen": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc70fef911d5d45259b93", - "download": "https://api.biosimulations.org/results/674dc70fef911d5d45259b93/download", - "logs": "https://api.biosimulations.org/logs/674dc70fef911d5d45259b93?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599ab2707aa64104620e78", + "download": "https://api.biosimulations.org/results/67599ab2707aa64104620e78/download", + "logs": "https://api.biosimulations.org/logs/67599ab2707aa64104620e78?includeOutput=true", "log_yml": { - "duration": 0.203972, + "duration": 0.192577, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -416,11 +416,11 @@ }, "boolnet": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc711ef911d5d45259b96", - "download": "https://api.biosimulations.org/results/674dc711ef911d5d45259b96/download", - "logs": "https://api.biosimulations.org/logs/674dc711ef911d5d45259b96?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599ab5707aa64104620e7b", + "download": "https://api.biosimulations.org/results/67599ab5707aa64104620e7b/download", + "logs": "https://api.biosimulations.org/logs/67599ab5707aa64104620e7b?includeOutput=true", "log_yml": { - "duration": 0.225376, + "duration": 0.215529, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -433,11 +433,11 @@ }, "cbmpy": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc713261553b9bc253f79", - "download": "https://api.biosimulations.org/results/674dc713261553b9bc253f79/download", - "logs": "https://api.biosimulations.org/logs/674dc713261553b9bc253f79?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599ab7707aa64104620e80", + "download": "https://api.biosimulations.org/results/67599ab7707aa64104620e80/download", + "logs": "https://api.biosimulations.org/logs/67599ab7707aa64104620e80?includeOutput=true", "log_yml": { - "duration": 0.289755, + "duration": 0.291428, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -450,11 +450,11 @@ }, "cobrapy": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc71510bb4455d6187760", - "download": "https://api.biosimulations.org/results/674dc71510bb4455d6187760/download", - "logs": "https://api.biosimulations.org/logs/674dc71510bb4455d6187760?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599abac3054f763d585aa0", + "download": "https://api.biosimulations.org/results/67599abac3054f763d585aa0/download", + "logs": "https://api.biosimulations.org/logs/67599abac3054f763d585aa0?includeOutput=true", "log_yml": { - "duration": 0.211138, + "duration": 0.200488, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -467,16 +467,16 @@ }, "copasi": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc717ef911d5d45259b9d", - "download": "https://api.biosimulations.org/results/674dc717ef911d5d45259b9d/download", - "logs": "https://api.biosimulations.org/logs/674dc717ef911d5d45259b9d?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599abdc3054f763d585aa4", + "download": "https://api.biosimulations.org/results/67599abdc3054f763d585aa4/download", + "logs": "https://api.biosimulations.org/logs/67599abdc3054f763d585aa4?includeOutput=true", "log_yml": { - "duration": 1.641921, + "duration": 1.737705, "exception": null, "output": "", "sedDocuments": [ { - "duration": 1.288502, + "duration": 1.36317, "exception": null, "location": "Adlung2021 _model_jakstat_pa.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 1 plots:\r\n Adlung2021 _model_jakstat_pa.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 71 data sets\r\n Plots (1):\r\n plot_2_task2: 2 curves\r\n\r\nExecuting SED-ML file 1: Adlung2021 _model_jakstat_pa.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_2_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...woohoo!\r\nwoohoo!\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `plot_2_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_report_for_task2` ...", @@ -492,7 +492,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.425806, + "duration": 0.438701, "exception": null, "id": "plot_2_task2", "output": "", @@ -786,7 +786,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.283452, + "duration": 0.300754, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -799,7 +799,7 @@ "tasks": [ { "algorithm": null, - "duration": 0.405635, + "duration": 0.449412, "exception": null, "id": "task2", "output": "", @@ -816,11 +816,11 @@ }, "gillespy2": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc71910bb4455d6187768", - "download": "https://api.biosimulations.org/results/674dc71910bb4455d6187768/download", - "logs": "https://api.biosimulations.org/logs/674dc71910bb4455d6187768?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599abf9fa297efdca4d491", + "download": "https://api.biosimulations.org/results/67599abf9fa297efdca4d491/download", + "logs": "https://api.biosimulations.org/logs/67599abf9fa297efdca4d491?includeOutput=true", "log_yml": { - "duration": 0.222051, + "duration": 0.214277, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -833,11 +833,11 @@ }, "ginsim": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc71cef911d5d45259ba4", - "download": "https://api.biosimulations.org/results/674dc71cef911d5d45259ba4/download", - "logs": "https://api.biosimulations.org/logs/674dc71cef911d5d45259ba4?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599ac29fa297efdca4d496", + "download": "https://api.biosimulations.org/results/67599ac29fa297efdca4d496/download", + "logs": "https://api.biosimulations.org/logs/67599ac29fa297efdca4d496?includeOutput=true", "log_yml": { - "duration": 0.208914, + "duration": 0.196684, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -850,11 +850,11 @@ }, "libsbmlsim": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc71fef911d5d45259bab", - "download": "https://api.biosimulations.org/results/674dc71fef911d5d45259bab/download", - "logs": "https://api.biosimulations.org/logs/674dc71fef911d5d45259bab?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599ac4c3054f763d585ab7", + "download": "https://api.biosimulations.org/results/67599ac4c3054f763d585ab7/download", + "logs": "https://api.biosimulations.org/logs/67599ac4c3054f763d585ab7?includeOutput=true", "log_yml": { - "duration": 0.224391, + "duration": 0.220112, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -867,11 +867,11 @@ }, "masspy": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc72110bb4455d6187776", - "download": "https://api.biosimulations.org/results/674dc72110bb4455d6187776/download", - "logs": "https://api.biosimulations.org/logs/674dc72110bb4455d6187776?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599ac79fa297efdca4d4ac", + "download": "https://api.biosimulations.org/results/67599ac79fa297efdca4d4ac/download", + "logs": "https://api.biosimulations.org/logs/67599ac79fa297efdca4d4ac?includeOutput=true", "log_yml": { - "duration": 1.749095, + "duration": 1.634359, "exception": { "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n Could not load MassModel 'Adlung2021___Cell_to_cell_variability_in_JAK2_STAT5_pathway'\n \n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] cannot be changed by XML manipulation, as the target is not an attribute of a model element", "type": "CombineArchiveExecutionError" @@ -879,7 +879,7 @@ "output": "", "sedDocuments": [ { - "duration": 1.203443, + "duration": 1.14293, "exception": { "message": "The SED document did not execute successfully:\n\n Could not load MassModel 'Adlung2021___Cell_to_cell_variability_in_JAK2_STAT5_pathway'\n\n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] cannot be changed by XML manipulation, as the target is not an attribute of a model element", "type": "SedmlExecutionError" @@ -898,7 +898,7 @@ "status": "SKIPPED" } ], - "duration": 0.114936, + "duration": 0.114204, "exception": null, "id": "plot_2_task2", "output": "", @@ -1192,7 +1192,7 @@ "status": "SKIPPED" } ], - "duration": 0.054385, + "duration": 0.054267, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -1205,7 +1205,7 @@ "tasks": [ { "algorithm": null, - "duration": 0.299056, + "duration": 0.295311, "exception": { "message": "Could not load MassModel 'Adlung2021___Cell_to_cell_variability_in_JAK2_STAT5_pathway'", "type": "MassSimulationError" @@ -1218,7 +1218,7 @@ }, { "algorithm": null, - "duration": 0.039305, + "duration": 0.040358, "exception": { "message": "target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] cannot be changed by XML manipulation, as the target is not an attribute of a model element", "type": "NotImplementedError" @@ -1238,11 +1238,11 @@ }, "netpyne": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc723261553b9bc253f8b", - "download": "https://api.biosimulations.org/results/674dc723261553b9bc253f8b/download", - "logs": "https://api.biosimulations.org/logs/674dc723261553b9bc253f8b?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599ac99fa297efdca4d4b9", + "download": "https://api.biosimulations.org/results/67599ac99fa297efdca4d4b9/download", + "logs": "https://api.biosimulations.org/logs/67599ac99fa297efdca4d4b9?includeOutput=true", "log_yml": { - "duration": 0.077495, + "duration": 0.070045, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -1255,11 +1255,11 @@ }, "neuron": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc724ef911d5d45259bb4", - "download": "https://api.biosimulations.org/results/674dc724ef911d5d45259bb4/download", - "logs": "https://api.biosimulations.org/logs/674dc724ef911d5d45259bb4?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599acc9fa297efdca4d4ca", + "download": "https://api.biosimulations.org/results/67599acc9fa297efdca4d4ca/download", + "logs": "https://api.biosimulations.org/logs/67599acc9fa297efdca4d4ca?includeOutput=true", "log_yml": { - "duration": 0.07574, + "duration": 0.050918, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -1272,16 +1272,16 @@ }, "opencor": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc726261553b9bc253f92", - "download": "https://api.biosimulations.org/results/674dc726261553b9bc253f92/download", - "logs": "https://api.biosimulations.org/logs/674dc726261553b9bc253f92?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599acfc3054f763d585ae9", + "download": "https://api.biosimulations.org/results/67599acfc3054f763d585ae9/download", + "logs": "https://api.biosimulations.org/logs/67599acfc3054f763d585ae9?includeOutput=true", "log_yml": { - "duration": 0.036584, + "duration": 0.033878, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp12_0bvak/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", + "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpblkh9ofw/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1289,11 +1289,11 @@ }, "pyneuroml": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc728ef911d5d45259bc1", - "download": "https://api.biosimulations.org/results/674dc728ef911d5d45259bc1/download", - "logs": "https://api.biosimulations.org/logs/674dc728ef911d5d45259bc1?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599ad1c3054f763d585aef", + "download": "https://api.biosimulations.org/results/67599ad1c3054f763d585aef/download", + "logs": "https://api.biosimulations.org/logs/67599ad1c3054f763d585aef?includeOutput=true", "log_yml": { - "duration": 0.053923, + "duration": 0.051678, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -1306,19 +1306,19 @@ }, "pysces": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc72b10bb4455d6187792", - "download": "https://api.biosimulations.org/results/674dc72b10bb4455d6187792/download", - "logs": "https://api.biosimulations.org/logs/674dc72b10bb4455d6187792?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599ad39fa297efdca4d4df", + "download": "https://api.biosimulations.org/results/67599ad39fa297efdca4d4df/download", + "logs": "https://api.biosimulations.org/logs/67599ad39fa297efdca4d4df?includeOutput=true", "log_yml": { - "duration": 1.953334, + "duration": 1.931887, "exception": null, "output": "libtk8.6.so: cannot open shared object file: No such file or directory\r\n\r\nPySCeS defaults to matplotlib's TKagg backend if not specified in the user configuration file, set \"matplotlib_backend = \" \r\nMatplotlib interface loaded (pysces.plt.m)\r\nPitcon routines available\r\nNLEQ2 routines available\r\nSBML support available\r\nYou are using NumPy (2.1.2) with SciPy (1.14.1)\r\nAssimulo CVode available\r\nRateChar is available\r\nParallel scanner is available\r\n\r\nPySCeS environment\r\n******************\r\npysces.model_dir = /home/FCAM/crbmapi/Pysces/psc\r\npysces.output_dir = /home/FCAM/crbmapi/Pysces\r\n\r\n\r\n***********************************************************************\r\n* Welcome to PySCeS (1.2.2) - Python Simulator for Cellular Systems *\r\n* http://pysces.sourceforge.net *\r\n* Copyright(C) B.G. Olivier, J.M. Rohwer, J.-H.S. Hofmeyr, 2004-2024 *\r\n* Triple-J Group for Molecular Cell Physiology *\r\n* Stellenbosch University, ZA and VU University Amsterdam, NL *\r\n* PySCeS is distributed under the PySCeS (BSD style) licence, see *\r\n* LICENCE.txt (supplied with this release) for details *\r\n* Please cite PySCeS with: doi:10.1093/bioinformatics/bti046 *\r\n***********************************************************************\r\n", "sedDocuments": [ { - "duration": 1.562623, + "duration": 1.557796, "exception": null, "location": "Adlung2021 _model_jakstat_pa.sedml", - "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 1 plots:\r\n Adlung2021 _model_jakstat_pa.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 71 data sets\r\n Plots (1):\r\n plot_2_task2: 2 curves\r\n\r\nExecuting SED-ML file 1: Adlung2021 _model_jakstat_pa.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_2_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V4\r\nInfo: multiple compartments defined but reaction v1_v_0 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v2_v_1 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v3_v_2 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v4_v_3 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v5_v_4 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v6_v_5 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v7_v_6 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v8_v_7 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v9_v_8 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v12_v_11 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v13_v_12 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v14_v_13 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v15_v_14 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v16_v_15 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v17_v_16 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v18_v_17 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v19_v_18 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v20_v_19 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v21_v_20 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v22_v_21 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v23_v_22 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v24_v_23 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v25_v_24 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v26_v_25 is not located in any of them.\r\nWriting file: /tmp/tmpy900as0i.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmp6gzqmdi2.xml\r\nout: /tmp/tmpy900as0i.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmpy900as0i.psc loading ..... \r\nParsing file: /tmp/tmpy900as0i.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"epo_level\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_EpoRJAK2\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_SHP1\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"Total_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"measuralbe_pSTAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"_pSTAT5_Total_STAT5\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 301 points: 0.10260415077209473\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\nInfo: multiple compartments defined but reaction v1_v_0 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v2_v_1 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v3_v_2 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v4_v_3 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v5_v_4 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v6_v_5 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v7_v_6 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v8_v_7 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v9_v_8 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v12_v_11 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v13_v_12 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v14_v_13 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v15_v_14 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v16_v_15 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v17_v_16 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v18_v_17 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v19_v_18 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v20_v_19 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v21_v_20 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v22_v_21 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v23_v_22 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v24_v_23 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v25_v_24 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v26_v_25 is not located in any of them.\r\nWriting file: /tmp/tmpbpvx7xp9.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpmmgnw416.xml\r\nout: /tmp/tmpbpvx7xp9.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmpbpvx7xp9.psc loading ..... \r\nParsing file: /tmp/tmpbpvx7xp9.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"epo_level\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_EpoRJAK2\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_SHP1\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"Total_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"measuralbe_pSTAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"_pSTAT5_Total_STAT5\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 301 points: 0.03392362594604492\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `plot_2_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_report_for_task2` ...", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 1 plots:\r\n Adlung2021 _model_jakstat_pa.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 71 data sets\r\n Plots (1):\r\n plot_2_task2: 2 curves\r\n\r\nExecuting SED-ML file 1: Adlung2021 _model_jakstat_pa.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_2_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V4\r\nInfo: multiple compartments defined but reaction v1_v_0 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v2_v_1 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v3_v_2 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v4_v_3 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v5_v_4 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v6_v_5 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v7_v_6 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v8_v_7 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v9_v_8 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v12_v_11 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v13_v_12 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v14_v_13 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v15_v_14 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v16_v_15 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v17_v_16 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v18_v_17 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v19_v_18 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v20_v_19 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v21_v_20 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v22_v_21 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v23_v_22 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v24_v_23 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v25_v_24 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v26_v_25 is not located in any of them.\r\nWriting file: /tmp/tmptelviber.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpepd0wri6.xml\r\nout: /tmp/tmptelviber.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmptelviber.psc loading ..... \r\nParsing file: /tmp/tmptelviber.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"epo_level\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_EpoRJAK2\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_SHP1\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"Total_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"measuralbe_pSTAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"_pSTAT5_Total_STAT5\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 301 points: 0.10172271728515625\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\nInfo: multiple compartments defined but reaction v1_v_0 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v2_v_1 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v3_v_2 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v4_v_3 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v5_v_4 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v6_v_5 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v7_v_6 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v8_v_7 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v9_v_8 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v12_v_11 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v13_v_12 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v14_v_13 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v15_v_14 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v16_v_15 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v17_v_16 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v18_v_17 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v19_v_18 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v20_v_19 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v21_v_20 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v22_v_21 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v23_v_22 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v24_v_23 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v25_v_24 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v26_v_25 is not located in any of them.\r\nWriting file: /tmp/tmp9fsi8kio.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpacmt7gzo.xml\r\nout: /tmp/tmp9fsi8kio.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmp9fsi8kio.psc loading ..... \r\nParsing file: /tmp/tmp9fsi8kio.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"epo_level\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_EpoRJAK2\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_SHP1\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"Total_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"measuralbe_pSTAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"_pSTAT5_Total_STAT5\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 301 points: 0.03294992446899414\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `plot_2_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_report_for_task2` ...", "outputs": [ { "curves": [ @@ -1331,7 +1331,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.32812, + "duration": 0.33374, "exception": null, "id": "plot_2_task2", "output": "", @@ -1625,7 +1625,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.281397, + "duration": 0.277968, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -1638,7 +1638,7 @@ "tasks": [ { "algorithm": null, - "duration": 0.770676, + "duration": 0.76111, "exception": null, "id": "task2", "output": "", @@ -1655,11 +1655,11 @@ }, "rbapy": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc72cef911d5d45259bdc", - "download": "https://api.biosimulations.org/results/674dc72cef911d5d45259bdc/download", - "logs": "https://api.biosimulations.org/logs/674dc72cef911d5d45259bdc?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599ad69fa297efdca4d4eb", + "download": "https://api.biosimulations.org/results/67599ad69fa297efdca4d4eb/download", + "logs": "https://api.biosimulations.org/logs/67599ad69fa297efdca4d4eb?includeOutput=true", "log_yml": { - "duration": 0.19761, + "duration": 0.196313, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -1672,11 +1672,11 @@ }, "smoldyn": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc72eef911d5d45259bf2", - "download": "https://api.biosimulations.org/results/674dc72eef911d5d45259bf2/download", - "logs": "https://api.biosimulations.org/logs/674dc72eef911d5d45259bf2?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599ad8707aa64104620ee3", + "download": "https://api.biosimulations.org/results/67599ad8707aa64104620ee3/download", + "logs": "https://api.biosimulations.org/logs/67599ad8707aa64104620ee3?includeOutput=true", "log_yml": { - "duration": 0.052547, + "duration": 0.050916, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -1689,16 +1689,16 @@ }, "tellurium": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc73010bb4455d61877b0", - "download": "https://api.biosimulations.org/results/674dc73010bb4455d61877b0/download", - "logs": "https://api.biosimulations.org/logs/674dc73010bb4455d61877b0?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599adbc3054f763d585b17", + "download": "https://api.biosimulations.org/results/67599adbc3054f763d585b17/download", + "logs": "https://api.biosimulations.org/logs/67599adbc3054f763d585b17?includeOutput=true", "log_yml": { - "duration": 2.003138, + "duration": 1.948321, "exception": null, "output": "", "sedDocuments": [ { - "duration": 1.536872, + "duration": 1.49288, "exception": null, "location": "Adlung2021 _model_jakstat_pa.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 1 plots:\r\n Adlung2021 _model_jakstat_pa.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 71 data sets\r\n Plots (1):\r\n plot_2_task2: 2 curves\r\n\r\nExecuting SED-ML file 1: Adlung2021 _model_jakstat_pa.sedml ...\r\n Found 2 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_2_task2`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `plot_2_task2` ... \u001b[36mqueued\u001b[0m\r\n Generating output 2: `autogen_report_for_task2` ... \u001b[36mqueued\u001b[0m\r\n Executing task 2: `task2`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `plot_2_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_report_for_task2` ...", @@ -1714,7 +1714,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.171614, + "duration": 0.161037, "exception": null, "id": "plot_2_task2", "output": "", @@ -2008,7 +2008,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.310442, + "duration": 0.279788, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -2021,7 +2021,7 @@ "tasks": [ { "algorithm": "KISAO_0000019", - "duration": 0.242318, + "duration": 0.240213, "exception": null, "id": "task1", "output": "", @@ -2088,7 +2088,7 @@ }, { "algorithm": null, - "duration": 0.173827, + "duration": 0.183423, "exception": null, "id": "task2", "output": "", @@ -2105,11 +2105,11 @@ }, "vcell": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc733ef911d5d45259bfd", - "download": "https://api.biosimulations.org/results/674dc733ef911d5d45259bfd/download", - "logs": "https://api.biosimulations.org/logs/674dc733ef911d5d45259bfd?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599ae09fa297efdca4d51c", + "download": "https://api.biosimulations.org/results/67599ae09fa297efdca4d51c/download", + "logs": "https://api.biosimulations.org/logs/67599ae09fa297efdca4d51c?includeOutput=true", "log_yml": { - "duration": 10, + "duration": 9, "exception": null, "output": "Processing Adlung2021 _model_jakstat_pa.sedml. Done", "sedDocuments": [ @@ -2464,11 +2464,11 @@ }, "xpp": { "response": 201, - "view": "https://api.biosimulations.org/runs/674dc73510bb4455d61877b9", - "download": "https://api.biosimulations.org/results/674dc73510bb4455d61877b9/download", - "logs": "https://api.biosimulations.org/logs/674dc73510bb4455d61877b9?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67599ae3c3054f763d585b3c", + "download": "https://api.biosimulations.org/results/67599ae3c3054f763d585b3c/download", + "logs": "https://api.biosimulations.org/logs/67599ae3c3054f763d585b3c?includeOutput=true", "log_yml": { - "duration": 0.073538, + "duration": 0.0681, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" diff --git a/BioModels/test_biomodels_compatibility_biosimulators.py b/BioModels/test_biomodels_compatibility_biosimulators.py index d02cf941..e9757f99 100644 --- a/BioModels/test_biomodels_compatibility_biosimulators.py +++ b/BioModels/test_biomodels_compatibility_biosimulators.py @@ -163,7 +163,7 @@ def main(): if __name__ == "__main__": - use_original_files = False + use_original_files = True biomodel_id_list = ["BIOMD0000000001", "BIOMD0000000138", "BIOMD0000000724", From 92205bb4a9362d43a8e92a1dc99f82b2e9f643b9 Mon Sep 17 00:00:00 2001 From: Padraig Gleeson Date: Thu, 9 Jan 2025 17:37:15 +0000 Subject: [PATCH 4/9] Test with libncurses6 (#109) --- .github/workflows/non-omv-local.yml | 2 +- .github/workflows/non-omv-remote.yml | 2 +- .github/workflows/non-omv.yml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/non-omv-local.yml b/.github/workflows/non-omv-local.yml index fb60d8bd..72bad377 100644 --- a/.github/workflows/non-omv-local.yml +++ b/.github/workflows/non-omv-local.yml @@ -30,7 +30,7 @@ jobs: pip install pyNeuroML[annotations] pip install python-libsedml pip install tellurium - sudo apt-get install libncurses5 --fix-missing + sudo apt-get install libncurses6 --fix-missing omv install jneuroml pip install "pymetadata>=0.4.2" docker "requests<2.32.0" diff --git a/.github/workflows/non-omv-remote.yml b/.github/workflows/non-omv-remote.yml index 89fa8980..f7b56531 100644 --- a/.github/workflows/non-omv-remote.yml +++ b/.github/workflows/non-omv-remote.yml @@ -30,7 +30,7 @@ jobs: pip install pyNeuroML[annotations] pip install python-libsedml pip install tellurium - sudo apt-get install libncurses5 --fix-missing + sudo apt-get install libncurses6 --fix-missing omv install jneuroml pip install "pymetadata>=0.4.2" docker "requests<2.32.0" diff --git a/.github/workflows/non-omv.yml b/.github/workflows/non-omv.yml index 9ca14b48..87fe5942 100644 --- a/.github/workflows/non-omv.yml +++ b/.github/workflows/non-omv.yml @@ -35,7 +35,7 @@ jobs: - name: Test tellurium run: | pip install tellurium - sudo apt-get install libncurses5 --fix-missing + sudo apt-get install libncurses6 --fix-missing cd tellurium python simple.py -nogui From 2cde37d7b767f1f40cc636f07a14c4ec81266f21 Mon Sep 17 00:00:00 2001 From: Stella <30465823+stellaprins@users.noreply.github.com> Date: Mon, 13 Jan 2025 12:07:00 +0000 Subject: [PATCH 5/9] Add pre-commit configuration and pyproject.toml and update gitignore (#111) --- .gitignore | 1 + .pre-commit-config.yaml | 50 +++++++++++++++++++++++++++++++++++++++++ pyproject.toml | 24 ++++++++++++++++++++ 3 files changed, 75 insertions(+) create mode 100644 .pre-commit-config.yaml create mode 100644 pyproject.toml diff --git a/.gitignore b/.gitignore index e837a44d..0b8437e8 100644 --- a/.gitignore +++ b/.gitignore @@ -36,6 +36,7 @@ arm64 /SBML/ex9.csv /SBML/hr.csv /test_suite/semantic/ +/test_suite/SBML_test_suite/ /test_suite/semantic_tests_with_sedml_and_graphs.v*.zip* .vscode /BioModels/cache diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 00000000..67bb961e --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,50 @@ +# Formatting shouldn't be applied to auto generated files, +# or files taken verbatim from external resources. +exclude: |- + (?x)^( + LEMS/.*| + Brian/.*| + NEURON/.*| + NeuroML2/.*| + tellurium/simple.py*| + .*\.xml$| + .*\.sedml$| + .*\.sbml$| + .*\.omex$| + .*\.json$| + .*\.md$| + )$ + +repos: + - repo: https://github.com/astral-sh/ruff-pre-commit + rev: v0.8.1 + hooks: + - id: ruff + - id: ruff-format + - repo: https://github.com/pappasam/toml-sort + rev: v0.24.2 + hooks: + - id: toml-sort-fix + - repo: https://github.com/pre-commit/mirrors-prettier + rev: v3.1.0 + hooks: + - id: prettier + args: + - --quote-props=as-needed + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: v5.0.0 + hooks: + - id: check-case-conflict + - id: check-docstring-first + - id: check-merge-conflict + - id: check-toml + - id: end-of-file-fixer + - id: mixed-line-ending + args: + - --fix=lf + - id: trailing-whitespace + + - repo: https://github.com/pre-commit/mirrors-isort + rev: v5.10.1 + hooks: + - id: isort diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 00000000..ba965d1b --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,24 @@ +[build-system] +requires = ["setuptools>=42", "wheel", "setuptools-scm"] +build-backend = "setuptools.build_meta" + +[project] +name = "SBMLShowcase" +dynamic = ["version"] +requires-python = ">=3.9" +dependencies = [ + "pyNeuroML[annotations]", + "python-libsedml", + "tellurium", + "pymetadata>=0.4.2", + "docker", + "requests<2.32.0" +] + +[project.optional-dependencies] +dev = [ + "pre-commit" +] + +[tool.setuptools] +packages = [] From cb78564637deb73df4892330f869f8c89953f33c Mon Sep 17 00:00:00 2001 From: Stella <30465823+stellaprins@users.noreply.github.com> Date: Mon, 13 Jan 2025 15:12:24 +0000 Subject: [PATCH 6/9] run pre-commit hooks on all files (#112) --- .github/workflows/non-omv-local.yml | 38 +- .github/workflows/non-omv-remote.yml | 77 +- .github/workflows/non-omv.yml | 96 +- .github/workflows/omv-ci.yml | 60 +- BioModels/parse_biomodels.py | 355 ++-- ...t_biomodels_compatibility_biosimulators.py | 158 +- SBML/.test.validate.sbml.omt | 4 +- SBML/tests/test_biosimulators_api.py | 7 +- SBML/tests/test_biosimulators_docker.py | 23 +- SBML/tests/test_biosimulators_local.py | 56 +- SBML/tests/test_biosimulators_remote.py | 54 +- .../tests/test_compatibility_biosimulators.py | 53 +- .../test_creation_combined_results_table.py | 60 +- SBML/tests/test_tellurium.py | 29 +- SBML/tests/validateAll.sh | 2 +- test_suite/process_test_suite.py | 143 +- ..._test_suite_compatibility_biosimulators.py | 98 +- utils/__init__.py | 1520 ++++++++++------- 18 files changed, 1612 insertions(+), 1221 deletions(-) diff --git a/.github/workflows/non-omv-local.yml b/.github/workflows/non-omv-local.yml index 72bad377..bd71c20f 100644 --- a/.github/workflows/non-omv-local.yml +++ b/.github/workflows/non-omv-local.yml @@ -1,31 +1,29 @@ - name: Testing non OMV scripts (locally using docker) on: push: - branches: [ master, development, experimental, test*, feature/* ] + branches: [master, development, experimental, test*, feature/*] pull_request: - branches: [ master, development, experimental, test*, feature/* ] + branches: [master, development, experimental, test*, feature/*] jobs: build: - runs-on: ubuntu-latest strategy: fail-fast: false matrix: - python-version: [ 3.9, "3.10" ] + python-version: [3.9, "3.10"] steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v4 - - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v5 - with: - python-version: ${{ matrix.python-version }} + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v5 + with: + python-version: ${{ matrix.python-version }} - - name: Install dependencies - run: | + - name: Install dependencies + run: | pip install git+https://github.com/OpenSourceBrain/osb-model-validation pip install pyNeuroML[annotations] pip install python-libsedml @@ -34,16 +32,14 @@ jobs: omv install jneuroml pip install "pymetadata>=0.4.2" docker "requests<2.32.0" - - name: Final version info - run: | - omv list -V # list installed engines - pip list - env + - name: Final version info + run: | + omv list -V # list installed engines + pip list + env - - name: Test local biosimulators compatibility table creation - run: | + - name: Test local biosimulators compatibility table creation + run: | cd SBML/tests sudo rm -rf output python ./test_biosimulators_local.py --output-dir=tmp_plots - - \ No newline at end of file diff --git a/.github/workflows/non-omv-remote.yml b/.github/workflows/non-omv-remote.yml index f7b56531..6680ea33 100644 --- a/.github/workflows/non-omv-remote.yml +++ b/.github/workflows/non-omv-remote.yml @@ -1,55 +1,50 @@ - name: Testing non OMV scripts (remotely via URLs) on: push: - branches: [ master, development, experimental, test*, feature/* ] + branches: [master, development, experimental, test*, feature/*] pull_request: - branches: [ master, development, experimental, test*, feature/* ] + branches: [master, development, experimental, test*, feature/*] jobs: build: - runs-on: ubuntu-latest strategy: fail-fast: false matrix: - python-version: [ 3.9, "3.10" ] + python-version: [3.9, "3.10"] steps: - - uses: actions/checkout@v4 - - - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v5 - with: - python-version: ${{ matrix.python-version }} - - - name: Install dependencies - run: | - pip install git+https://github.com/OpenSourceBrain/osb-model-validation - pip install pyNeuroML[annotations] - pip install python-libsedml - pip install tellurium - sudo apt-get install libncurses6 --fix-missing - omv install jneuroml - pip install "pymetadata>=0.4.2" docker "requests<2.32.0" - - - - name: Final version info - run: | - omv list -V # list installed engines - pip list - env - - - name: Check health status of biosimulations API - run: | - cd SBML/tests - python ./test_biosimulators_api.py - - - name: Test remote biosimulators compatibility table creation - run: | - cd SBML/tests - sudo rm -rf output - python ./test_biosimulators_remote.py --output-dir=tmp_plots - - \ No newline at end of file + - uses: actions/checkout@v4 + + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v5 + with: + python-version: ${{ matrix.python-version }} + + - name: Install dependencies + run: | + pip install git+https://github.com/OpenSourceBrain/osb-model-validation + pip install pyNeuroML[annotations] + pip install python-libsedml + pip install tellurium + sudo apt-get install libncurses6 --fix-missing + omv install jneuroml + pip install "pymetadata>=0.4.2" docker "requests<2.32.0" + + - name: Final version info + run: | + omv list -V # list installed engines + pip list + env + + - name: Check health status of biosimulations API + run: | + cd SBML/tests + python ./test_biosimulators_api.py + + - name: Test remote biosimulators compatibility table creation + run: | + cd SBML/tests + sudo rm -rf output + python ./test_biosimulators_remote.py --output-dir=tmp_plots diff --git a/.github/workflows/non-omv.yml b/.github/workflows/non-omv.yml index 87fe5942..344863d6 100644 --- a/.github/workflows/non-omv.yml +++ b/.github/workflows/non-omv.yml @@ -1,72 +1,70 @@ - name: Testing non OMV scripts on: push: - branches: [ master, development, experimental, test*, feature/* ] + branches: [master, development, experimental, test*, feature/*] pull_request: - branches: [ master, development, experimental, test*, feature/* ] - + branches: [master, development, experimental, test*, feature/*] + jobs: build: - runs-on: ubuntu-latest strategy: fail-fast: false matrix: - python-version: [ "3.10", "3.11" ] + python-version: ["3.10", "3.11"] steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v4 - - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v5 - with: - python-version: ${{ matrix.python-version }} + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v5 + with: + python-version: ${{ matrix.python-version }} - - name: Install OMV - run: | - pip install git+https://github.com/OpenSourceBrain/osb-model-validation + - name: Install OMV + run: | + pip install git+https://github.com/OpenSourceBrain/osb-model-validation - - name: Run tests - run: | - omv install jneuroml + - name: Run tests + run: | + omv install jneuroml - - name: Test tellurium - run: | - pip install tellurium - sudo apt-get install libncurses6 --fix-missing - cd tellurium - python simple.py -nogui + - name: Test tellurium + run: | + pip install tellurium + sudo apt-get install libncurses6 --fix-missing + cd tellurium + python simple.py -nogui - cd ../SBML/tests - pip install python-libsedml - python ./test_tellurium.py + cd ../SBML/tests + pip install python-libsedml + python ./test_tellurium.py - - name: Test validity of files - run: | - pip install pyNeuroML pyNeuroML[annotations] - cd SBML/tests - ./validateAll.sh + - name: Test validity of files + run: | + pip install pyNeuroML pyNeuroML[annotations] + cd SBML/tests + ./validateAll.sh - - name: Test omex file creation - run: | - pip install "pymetadata>=0.4.2" docker "requests<2.32.0" - cd SBML/tests - python ./test_biosimulators_docker.py + - name: Test omex file creation + run: | + pip install "pymetadata>=0.4.2" docker "requests<2.32.0" + cd SBML/tests + python ./test_biosimulators_docker.py - - name: Test test_suite output regeneration - run: | - cd test_suite - ./test_results_regeneration.sh + - name: Test test_suite output regeneration + run: | + cd test_suite + ./test_results_regeneration.sh - - name: Final version info - run: | - omv list -V # list installed engines - pip list - env + - name: Final version info + run: | + omv list -V # list installed engines + pip list + env - - name: Create results table - run: | - cd SBML/tests - python ./test_creation_combined_results_table.py \ No newline at end of file + - name: Create results table + run: | + cd SBML/tests + python ./test_creation_combined_results_table.py diff --git a/.github/workflows/omv-ci.yml b/.github/workflows/omv-ci.yml index 8819ba66..c406d6c7 100644 --- a/.github/workflows/omv-ci.yml +++ b/.github/workflows/omv-ci.yml @@ -2,38 +2,48 @@ name: Continuous build using OMV on: push: - branches: [ master, development, experimental, test*, feature/* ] + branches: [master, development, experimental, test*, feature/*] pull_request: - branches: [ master, development, experimental, test*, feature/* ] + branches: [master, development, experimental, test*, feature/*] jobs: build: - runs-on: ubuntu-latest strategy: fail-fast: false matrix: - python-version: [ "3.10", "3.11" ] - engine: [ jLEMS, jNeuroML, jNeuroML_NEURON, jNeuroML_validate, PyLEMS, PyLEMS_NeuroML2, jNeuroML_Brian2, Brian2, pyNeuroML_validate_sbml ] + python-version: ["3.10", "3.11"] + engine: + [ + jLEMS, + jNeuroML, + jNeuroML_NEURON, + jNeuroML_validate, + PyLEMS, + PyLEMS_NeuroML2, + jNeuroML_Brian2, + Brian2, + pyNeuroML_validate_sbml, + ] steps: - - uses: actions/checkout@v4 - - - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v5 - with: - python-version: ${{ matrix.python-version }} - - - name: Install OMV - run: | - pip install git+https://github.com/OpenSourceBrain/osb-model-validation - pip install scipy sympy matplotlib cython pandas tables - - - name: Run OMV tests on engine ${{ matrix.engine }} - run: | - omv all -V --engine=${{ matrix.engine }} - - - name: OMV final version info - run: | - omv list -V # list installed engines - env + - uses: actions/checkout@v4 + + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v5 + with: + python-version: ${{ matrix.python-version }} + + - name: Install OMV + run: | + pip install git+https://github.com/OpenSourceBrain/osb-model-validation + pip install scipy sympy matplotlib cython pandas tables + + - name: Run OMV tests on engine ${{ matrix.engine }} + run: | + omv all -V --engine=${{ matrix.engine }} + + - name: OMV final version info + run: | + omv list -V # list installed engines + env diff --git a/BioModels/parse_biomodels.py b/BioModels/parse_biomodels.py index 50244c52..ee434a6e 100755 --- a/BioModels/parse_biomodels.py +++ b/BioModels/parse_biomodels.py @@ -1,7 +1,19 @@ #!/usr/bin/env python3 -md_description = \ -''' +import os +import pickle +import re +import sys +import urllib + +import matplotlib +import pyneuroml.sbml # for validate_sbml_files +import pyneuroml.sedml # for validate_sedml_files + +sys.path.append("..") +import utils + +md_description = """ Download and run validation tests on all the curated models from BioModels https://www.ebi.ac.uk/biomodels. The final step is to run the model in tellurium, only models specified in SBML with a matching SEDML file are run in tellurium. @@ -10,57 +22,48 @@ 'valid-sbml-units' enforces strict unit checking, 'broken-ref' indicates that the SEDML file contained a broken source='model.xml' reference which was corrected to the name of the model's provided SBML file. -''' - -import pyneuroml.sbml #for validate_sbml_files -import pyneuroml.sedml #for validate_sedml_files +""" -import re -import os -import urllib -import sys -import matplotlib -import pickle - -sys.path.append("..") -import utils - -matplotlib.use('agg') #prevent matplotlib from trying to open a window +matplotlib.use("agg") # prevent matplotlib from trying to open a window API_URL: str = "https://www.ebi.ac.uk/biomodels" -out_format="json" -max_count = 0 #0 for unlimited +out_format = "json" +max_count = 0 # 0 for unlimited -#local temporary storage of the model files -#this is independent of caching, and still happens when caching is turned off -#this allows the model to be executed and the files manually examined etc +# local temporary storage of the model files +# this is independent of caching, and still happens when caching is turned off +# this allows the model to be executed and the files manually examined etc tmp_dir = "tmplocalfiles" -#suppress stdout/err output from validation functions to make progress counter readable +# suppress stdout/err output from validation functions to make progress counter readable suppress_stdout = True suppress_stderr = True -#whether to replace "model.xml" in the sedml file with the name of the actual sbml file +# whether to replace "model.xml" in the sedml file with the name of the actual sbml file fix_broken_ref = True -#skip tests that cause the script to be killed due to lack of RAM -#needs at least 8GB +# skip tests that cause the script to be killed due to lack of RAM +# needs at least 8GB skip = {} -def download_file(model_id,filename,output_file,cache): - ''' + +def download_file(model_id, filename, output_file, cache): + """ request the given file and save it to disk - ''' + """ qfilename = urllib.parse.quote_plus(filename) - response = cache.do_request(f'{API_URL}/model/download/{model_id}?filename={qfilename}').content + response = cache.do_request( + f"{API_URL}/model/download/{model_id}?filename={qfilename}" + ).content - with open(output_file,"wb") as fout: + with open(output_file, "wb") as fout: fout.write(response) -def replace_model_xml(sedml_path,sbml_filename): - ''' + +def replace_model_xml(sedml_path, sbml_filename): + """ if the SEDML refers to a generic "model.xml" file and the SBML file is not called this replace the SEDML reference with the actual SBML filename @@ -70,245 +73,285 @@ def replace_model_xml(sedml_path,sbml_filename): which was true at time of testing on current BioModels release returns True if the SBML reference already seemed valid - ''' + """ - if sbml_filename == "model.xml": return True + if sbml_filename == "model.xml": + return True - with open(sedml_path,encoding='utf-8') as f: + with open(sedml_path, encoding="utf-8") as f: data = f.read() - if not 'source="model.xml"' in data: return True + if 'source="model.xml"' not in data: + return True - data = data.replace('source="model.xml"',f'source="{sbml_filename}"') + data = data.replace('source="model.xml"', f'source="{sbml_filename}"') - with open(f'{sedml_path}',"w",encoding="utf-8") as fout: + with open(f"{sedml_path}", "w", encoding="utf-8") as fout: fout.write(data) return False -def validate_sbml_file(model_id,mtab,info,cache,sup): - ''' + +def validate_sbml_file(model_id, mtab, info, cache, sup): + """ tasks relating to validating the SBML file return None to indicate aborting any further tests on this model otherwise return the SBML filename - ''' - - #handle only single SBML files - if not info['format']['name'] == "SBML": - mtab['valid_sbml'] = ['NonSBML', f"{info['format']['name']}:{info['files']['main']}"] + """ + + # handle only single SBML files + if not info["format"]["name"] == "SBML": + mtab["valid_sbml"] = [ + "NonSBML", + f"{info['format']['name']}:{info['files']['main']}", + ] return None - if len(info['files']['main']) > 1: - mtab['valid_sbml'] = ['MultipleSBMLs',f"{info['files']['main']}"] + if len(info["files"]["main"]) > 1: + mtab["valid_sbml"] = ["MultipleSBMLs", f"{info['files']['main']}"] return None - if len(info['files']['main']) < 1: - mtab['valid_sbml'] = ['NoSBMLs',f"{info['files']['main']}"] + if len(info["files"]["main"]) < 1: + mtab["valid_sbml"] = ["NoSBMLs", f"{info['files']['main']}"] return None - #download the sbml file - sbml_file = info['files']['main'][0]['name'] + # download the sbml file + sbml_file = info["files"]["main"][0]["name"] try: - download_file(model_id,sbml_file,sbml_file,cache) + download_file(model_id, sbml_file, sbml_file, cache) except Exception as e: - mtab['valid_sbml'] = ['DownloadFail',f"{sbml_file} {e}"] + mtab["valid_sbml"] = ["DownloadFail", f"{sbml_file} {e}"] return None - #validate the sbml file - sup.suppress() #suppress validation warning/error messages + # validate the sbml file + sup.suppress() # suppress validation warning/error messages valid_sbml = pyneuroml.sbml.validate_sbml_files([sbml_file], strict_units=False) - valid_sbml_units = pyneuroml.sbml.validate_sbml_files([sbml_file], strict_units=True) + valid_sbml_units = pyneuroml.sbml.validate_sbml_files( + [sbml_file], strict_units=True + ) sup.restore() - mtab['valid_sbml'] = ['pass' if valid_sbml else 'FAIL', f'[{sbml_file}]({API_URL}/{model_id}#Files)'] - mtab['valid_sbml_units'] = 'pass' if valid_sbml_units else 'FAIL' + mtab["valid_sbml"] = [ + "pass" if valid_sbml else "FAIL", + f"[{sbml_file}]({API_URL}/{model_id}#Files)", + ] + mtab["valid_sbml_units"] = "pass" if valid_sbml_units else "FAIL" return sbml_file -def validate_sedml_file(model_id,mtab,info,cache,sup,sbml_file): - ''' + +def validate_sedml_file(model_id, mtab, info, cache, sup, sbml_file): + """ tasks relating to validating the SEDML file return None to indicate aborting any further tests on this model otherwise return the SEDML filename - ''' + """ - #must have a SEDML file as well in order to be executed - if not 'additional' in info['files']: - mtab['valid_sedml'] = f"NoSEDML" + # must have a SEDML file as well in order to be executed + if "additional" not in info["files"]: + mtab["valid_sedml"] = "NoSEDML" return None sedml_file = [] - for file_info in info['files']['additional']: - pattern = 'SED[-]?ML' + for file_info in info["files"]["additional"]: + pattern = "SED[-]?ML" target = f"{file_info['name']}|{file_info['description']}".upper() - if re.search(pattern,target): - sedml_file.append(file_info['name']) + if re.search(pattern, target): + sedml_file.append(file_info["name"]) - #require exactly one SEDML file + # require exactly one SEDML file if len(sedml_file) == 0: - mtab['valid_sedml'] = "NoSEDML" + mtab["valid_sedml"] = "NoSEDML" return None if len(sedml_file) > 1: - mtab['valid_sedml'] = ["MultipleSEDMLs",f"{sedml_file}"] + mtab["valid_sedml"] = ["MultipleSEDMLs", f"{sedml_file}"] return None - #download sedml file + # download sedml file sedml_file = sedml_file[0] try: - download_file(model_id,sedml_file,sedml_file,cache) - except: - mtab['valid_sedml'] = ["DownloadFail",f"{sedml_file}"] + download_file(model_id, sedml_file, sedml_file, cache) + except Exception as e: + mtab["valid_sedml"] = ["DownloadFail", f"{e}"] return None - #if the sedml file contains a generic 'source="model.xml"' replace it with the sbml filename + # if the sedml file contains a generic 'source="model.xml"' replace it with the sbml filename if fix_broken_ref: - broken_ref = replace_model_xml(sedml_file,sbml_file) - mtab['broken_ref'] = 'pass' if broken_ref else 'FAIL' + broken_ref = replace_model_xml(sedml_file, sbml_file) + mtab["broken_ref"] = "pass" if broken_ref else "FAIL" else: - mtab['broken_ref'] = 'NA' + mtab["broken_ref"] = "NA" sup.suppress() valid_sedml = pyneuroml.sedml.validate_sedml_files([sedml_file]) sup.restore() - mtab['valid_sedml'] = ['pass' if valid_sedml else 'FAIL', f'[{sedml_file}]({API_URL}/{model_id}#Files)'] + mtab["valid_sedml"] = [ + "pass" if valid_sedml else "FAIL", + f"[{sedml_file}]({API_URL}/{model_id}#Files)", + ] return sedml_file + def main(): - ''' + """ download the BioModel model files, run various validation steps report the results as a markdown table README file with a summary row at the top - ''' + """ - #caching is used to prevent the need to download the same responses from the remote server multiple times during testing - #mode="off" to disable caching, "store" to wipe and store fresh results, "reuse" to use the stored cache - cache = utils.RequestCache(mode="auto",direc="cache") + # caching is used to prevent the need to download the same responses from the remote server multiple times during testing + # mode="off" to disable caching, "store" to wipe and store fresh results, "reuse" to use the stored cache + cache = utils.RequestCache(mode="auto", direc="cache") - #accumulate results in columns defined by keys which correspond to the local variable names to be used below - #to allow automated loading into the columns + # accumulate results in columns defined by keys which correspond to the local variable names to be used below + # to allow automated loading into the columns column_labels = "Model |valid-sbml|valid-sbml-units|valid-sedml|broken-ref|tellurium|tellurium-remote|copasi-remote" - column_keys = "model_desc|valid_sbml|valid_sbml_units|valid_sedml|broken_ref|tellurium_outcome|tellurium_remote_outcome|copasi_remote_outcome" - mtab = utils.MarkdownTable(column_labels,column_keys) + column_keys = "model_desc|valid_sbml|valid_sbml_units|valid_sedml|broken_ref|tellurium_outcome|tellurium_remote_outcome|copasi_remote_outcome" + mtab = utils.MarkdownTable(column_labels, column_keys) - #allow stdout/stderr from validation tests to be suppressed to improve progress count visibility - sup = utils.SuppressOutput(stdout=suppress_stdout,stderr=suppress_stderr) + # allow stdout/stderr from validation tests to be suppressed to improve progress count visibility + sup = utils.SuppressOutput(stdout=suppress_stdout, stderr=suppress_stderr) - #get list of all available models - model_ids = cache.do_request(f"{API_URL}/model/identifiers?format={out_format}").json()['models'] + # get list of all available models + model_ids = cache.do_request( + f"{API_URL}/model/identifiers?format={out_format}" + ).json()["models"] count = 0 starting_dir = os.getcwd() - - for model_id in model_ids: + for model_id in model_ids: pickle_name = f"{model_id}_mtab.p" - pickle_path = os.path.join(starting_dir,tmp_dir,model_id,pickle_name) + pickle_path = os.path.join(starting_dir, tmp_dir, model_id, pickle_name) if os.path.exists(pickle_path) and use_pickles: - print(f"\r{model_id} {count}/{len(model_ids)} ",end='') + print(f"\r{model_id} {count}/{len(model_ids)} ", end="") print(f"loading {pickle_path}...") mtab_dict = pickle.load(open(pickle_path, "rb")) mtab.new_row() - mtab = mtab_dict['mtab_row'] + mtab = mtab_dict["mtab_row"] continue - #allow testing on a small sample of models - if max_count > 0 and count >= max_count: break + # allow testing on a small sample of models + if max_count > 0 and count >= max_count: + break count += 1 - print(f"\r{model_id} {count}/{len(model_ids)} ",end='') + print(f"\r{model_id} {count}/{len(model_ids)} ", end="") - #only process curated models - #BIOMD ids should be the curated models - if not 'BIOMD' in model_id: + # only process curated models + # BIOMD ids should be the curated models + if "BIOMD" not in model_id: continue - #skip if on the list to be skipped + # skip if on the list to be skipped if count in skip or model_id in skip: continue - #from this point the model will create an output row even if not all tests are run - mtab.new_row() #append empty placeholder row + # from this point the model will create an output row even if not all tests are run + mtab.new_row() # append empty placeholder row info = cache.do_request(f"{API_URL}/{model_id}?format={out_format}").json() - if len(info['name']) > 36: - model_summary = f"[{model_id}]({API_URL}/{model_id})
{info['name'][:30]}" + if len(info["name"]) > 36: + model_summary = ( + f"[{model_id}]({API_URL}/{model_id})
{info['name'][:30]}" + ) model_details = f"{info['name']}" - mtab['model_desc'] = mtab.make_fold(model_summary,model_details) + mtab["model_desc"] = mtab.make_fold(model_summary, model_details) else: - mtab['model_desc'] = f"[{model_id}]({API_URL}/{model_id})
{info['name']}" + mtab["model_desc"] = ( + f"[{model_id}]({API_URL}/{model_id})
{info['name']}" + ) - #make temporary downloads of the sbml and sedml files - model_dir = os.path.join(starting_dir,tmp_dir,model_id) - os.makedirs(model_dir,exist_ok=True) + # make temporary downloads of the sbml and sedml files + model_dir = os.path.join(starting_dir, tmp_dir, model_id) + os.makedirs(model_dir, exist_ok=True) os.chdir(model_dir) - #sbml file validation tasks, includes downloading a local copy - sbml_file = validate_sbml_file(model_id,mtab,info,cache,sup) - if not sbml_file: continue # no further tests possible + # sbml file validation tasks, includes downloading a local copy + sbml_file = validate_sbml_file(model_id, mtab, info, cache, sup) + if not sbml_file: + continue # no further tests possible - sedml_file = validate_sedml_file(model_id,mtab,info,cache,sup,sbml_file) - if not sedml_file: continue # no further tests possible + sedml_file = validate_sedml_file(model_id, mtab, info, cache, sup, sbml_file) + if not sedml_file: + continue # no further tests possible - #run the validation functions on the sbml and sedml files - print(f'\ntesting {sbml_file}...') + # run the validation functions on the sbml and sedml files + print(f"\ntesting {sbml_file}...") sup.suppress() - mtab['tellurium_outcome'] = utils.test_engine("tellurium",sedml_file) + mtab["tellurium_outcome"] = utils.test_engine("tellurium", sedml_file) sup.restore() + engine_keys = ["copasi", "tellurium"] + test_folder = "tests" + d1_plots_remote_dir = os.path.join(test_folder, "d1_plots_remote") + results_remote = utils.run_biosimulators_remotely( + engine_keys, + sedml_file_name=sedml_file, + sbml_file_name=sbml_file, + d1_plots_remote_dir=d1_plots_remote_dir, + test_folder=test_folder, + ) - engine_keys = ["copasi","tellurium"] - test_folder = 'tests' - d1_plots_remote_dir = os.path.join(test_folder, 'd1_plots_remote') - results_remote = utils.run_biosimulators_remotely(engine_keys, - sedml_file_name=sedml_file, - sbml_file_name=sbml_file, - d1_plots_remote_dir=d1_plots_remote_dir, - test_folder=test_folder) - - for e in engine_keys: - # only if log_yml key is present + # only if log_yml key is present if "log_yml" in results_remote[e]: - results_remote_processed = utils.process_log_yml_dict(results_remote[e]["log_yml"]) + results_remote_processed = utils.process_log_yml_dict( + results_remote[e]["log_yml"] + ) else: - results_remote_processed = {"status": "ERROR", "error_message": "log_yml key not found", "exception_type": "KeyError"} - mtab_remote_outcome_key = f'{e}_remote_outcome' + results_remote_processed = { + "status": "ERROR", + "error_message": "log_yml key not found", + "exception_type": "KeyError", + } + mtab_remote_outcome_key = f"{e}_remote_outcome" info_submission = f"Download: {results_remote[e]['download']}

Logs: {results_remote[e]['logs']}

View: {results_remote[e]['view']}

HTTP response: {str(results_remote[e]['response'])}" error_message_string = f'Error message: {results_remote_processed["error_message"]}

Exception type: {results_remote_processed["exception_type"]}' if results_remote_processed["error_message"] != "": - info_submission = info_submission + f'

{error_message_string}' + info_submission = info_submission + f"

{error_message_string}" - mtab[mtab_remote_outcome_key] = [results_remote_processed['status'], info_submission] + mtab[mtab_remote_outcome_key] = [ + results_remote_processed["status"], + info_submission, + ] - #stop matplotlib plots from building up + # stop matplotlib plots from building up matplotlib.pyplot.close() - mtab_dict = {'mtab_row': mtab,'results_remote': results_remote} + mtab_dict = {"mtab_row": mtab, "results_remote": results_remote} pickle.dump(mtab_dict, open(pickle_name, "wb")) - - print() #end progress counter, go to next line of stdout - - #show total cases processed - mtab.add_summary('model_desc',f'n={mtab.n_rows()}') - - #count occurrences of each cell value, convert to final form - for key in ['valid_sbml','valid_sbml_units','valid_sedml','broken_ref', - 'tellurium_outcome','tellurium_remote_outcome', 'copasi_remote_outcome']: + print() # end progress counter, go to next line of stdout + + # show total cases processed + mtab.add_summary("model_desc", f"n={mtab.n_rows()}") + + # count occurrences of each cell value, convert to final form + for key in [ + "valid_sbml", + "valid_sbml_units", + "valid_sedml", + "broken_ref", + "tellurium_outcome", + "tellurium_remote_outcome", + "copasi_remote_outcome", + ]: mtab.simple_summary(key) mtab.transform_column(key) - #convert engine error messages to foldable readable form - #calculate error category counts for summary row - #mtab.process_engine_outcomes('tellurium','tellurium_outcome') + # convert engine error messages to foldable readable form + # calculate error category counts for summary row + # mtab.process_engine_outcomes('tellurium','tellurium_outcome') - #write out to file + # write out to file os.chdir(starting_dir) - with open('README.md', "w", encoding="utf-8") as fout: + with open("README.md", "w", encoding="utf-8") as fout: fout.write(md_description) mtab.write(fout) + if __name__ == "__main__": use_pickles = True # model_id_n = 443 - main() \ No newline at end of file + main() diff --git a/BioModels/test_biomodels_compatibility_biosimulators.py b/BioModels/test_biomodels_compatibility_biosimulators.py index e9757f99..a75bb1a9 100644 --- a/BioModels/test_biomodels_compatibility_biosimulators.py +++ b/BioModels/test_biomodels_compatibility_biosimulators.py @@ -1,36 +1,41 @@ -import re import os -import urllib -import sys +import re import shutil +import sys +import urllib sys.path.append("..") import utils + engines = utils.ENGINES API_URL: str = "https://www.ebi.ac.uk/biomodels" -out_format="json" -max_count = 0 #0 for unlimited +out_format = "json" +max_count = 0 # 0 for unlimited tmp_dir = "tmplocalfiles" suppress_stdout = True suppress_stderr = True fix_broken_ref = True skip = {} -def download_file(model_id,filename,output_file,cache): - ''' + +def download_file(model_id, filename, output_file, cache): + """ request the given file and save it to disk - ''' + """ qfilename = urllib.parse.quote_plus(filename) - response = cache.do_request(f'{API_URL}/model/download/{model_id}?filename={qfilename}').content + response = cache.do_request( + f"{API_URL}/model/download/{model_id}?filename={qfilename}" + ).content - with open(output_file,"wb") as fout: + with open(output_file, "wb") as fout: fout.write(response) -def replace_model_xml(sedml_path,sbml_filename): - ''' + +def replace_model_xml(sedml_path, sbml_filename): + """ if the SEDML refers to a generic "model.xml" file and the SBML file is not called this replace the SEDML reference with the actual SBML filename @@ -40,97 +45,104 @@ def replace_model_xml(sedml_path,sbml_filename): which was true at time of testing on current BioModels release returns True if the SBML reference already seemed valid - ''' + """ - if sbml_filename == "model.xml": return True + if sbml_filename == "model.xml": + return True - with open(sedml_path,encoding='utf-8') as f: + with open(sedml_path, encoding="utf-8") as f: data = f.read() - if not 'source="model.xml"' in data: return True + if 'source="model.xml"' not in data: + return True - data = data.replace('source="model.xml"',f'source="{sbml_filename}"') + data = data.replace('source="model.xml"', f'source="{sbml_filename}"') - with open(f'{sedml_path}',"w",encoding="utf-8") as fout: + with open(f"{sedml_path}", "w", encoding="utf-8") as fout: fout.write(data) return False -def download_sbml_file(model_id,info,cache): - sbml_file = info['files']['main'][0]['name'] + +def download_sbml_file(model_id, info, cache): + sbml_file = info["files"]["main"][0]["name"] try: - download_file(model_id,sbml_file,sbml_file,cache) + download_file(model_id, sbml_file, sbml_file, cache) except Exception as e: raise Exception(f"Error downloading {sbml_file} for {model_id}: {e}") - + return sbml_file -def download_sedml_file(model_id,info,cache,sbml_file): - if not 'additional' in info['files']: +def download_sedml_file(model_id, info, cache, sbml_file): + if "additional" not in info["files"]: print(f"no additional files for {model_id}") sedml_file = [] - for file_info in info['files']['additional']: - pattern = 'SED[-]?ML' + for file_info in info["files"]["additional"]: + pattern = "SED[-]?ML" target = f"{file_info['name']}|{file_info['description']}".upper() - if re.search(pattern,target): - sedml_file.append(file_info['name']) + if re.search(pattern, target): + sedml_file.append(file_info["name"]) sedml_file = sedml_file[0] try: - download_file(model_id,sedml_file,sedml_file,cache) + download_file(model_id, sedml_file, sedml_file, cache) except Exception as e: print(f"Error downloading {sedml_file} for {model_id}: {e}") - #if the sedml file contains a generic 'source="model.xml"' replace it with the sbml filename + # if the sedml file contains a generic 'source="model.xml"' replace it with the sbml filename if fix_broken_ref: - replace_model_xml(sedml_file,sbml_file) + replace_model_xml(sedml_file, sbml_file) return sedml_file + def main(): - ''' + """ download the BioModel model files, run various validation steps report the results as a markdown table README file with a summary row at the top - ''' + """ - #mode="off" to disable caching, "store" to wipe and store fresh results, "reuse" to use the stored cache - cache = utils.RequestCache(mode="store",direc="cache") + # mode="off" to disable caching, "store" to wipe and store fresh results, "reuse" to use the stored cache + cache = utils.RequestCache(mode="store", direc="cache") count = 0 starting_dir = os.getcwd() - model_ids = cache.do_request(f"{API_URL}/model/identifiers?format={out_format}").json()['models'] - if biomodel_id_list != None: + model_ids = cache.do_request( + f"{API_URL}/model/identifiers?format={out_format}" + ).json()["models"] + if biomodel_id_list is not None: model_ids = biomodel_id_list - for model_id in model_ids: - - if max_count > 0 and count >= max_count: break + if max_count > 0 and count >= max_count: + break count += 1 - print(f"\r{model_id} {count}/{len(model_ids)} ",end='') + print(f"\r{model_id} {count}/{len(model_ids)} ", end="") - #BIOMD ids should be the curated models - if not 'BIOMD' in model_id: + # BIOMD ids should be the curated models + if "BIOMD" not in model_id: continue if count in skip or model_id in skip: continue info = cache.do_request(f"{API_URL}/{model_id}?format={out_format}").json() - tmp_model_dir = os.path.join(starting_dir,tmp_dir,model_id) - os.makedirs(tmp_model_dir,exist_ok=True) + tmp_model_dir = os.path.join(starting_dir, tmp_dir, model_id) + os.makedirs(tmp_model_dir, exist_ok=True) os.chdir(tmp_model_dir) - sbml_file = download_sbml_file(model_id,info,cache) - sbml_file_path = os.path.join(tmp_model_dir,sbml_file) - if not sbml_file: continue - sedml_file = download_sedml_file(model_id,info,cache,sbml_file) - sedml_file_path = os.path.join(tmp_model_dir,sedml_file) - if not sedml_file: continue + sbml_file = download_sbml_file(model_id, info, cache) + sbml_file_path = os.path.join(tmp_model_dir, sbml_file) + if not sbml_file: + continue + sedml_file = download_sedml_file(model_id, info, cache, sbml_file) + sedml_file_path = os.path.join(tmp_model_dir, sedml_file) + if not sedml_file: + continue - print(f'\ntesting {sbml_file}...') + print(f"\ntesting {sbml_file}...") new_subfolder = model_id new_directory = os.path.join(starting_dir, new_subfolder) @@ -139,33 +151,41 @@ def main(): new_sbml_file_path = os.path.join(new_directory, os.path.basename(sbml_file)) new_sedml_file_path = os.path.join(new_directory, os.path.basename(sedml_file)) - paths_exist = os.path.exists(new_sbml_file_path) and os.path.exists(new_sedml_file_path) + paths_exist = os.path.exists(new_sbml_file_path) and os.path.exists( + new_sedml_file_path + ) if use_original_files or not paths_exist: - print (f"Copying {sbml_file} and {sedml_file} to {starting_dir}/{new_subfolder}") + print( + f"Copying {sbml_file} and {sedml_file} to {starting_dir}/{new_subfolder}" + ) shutil.copy(sbml_file_path, new_sbml_file_path) shutil.copy(sedml_file_path, new_sedml_file_path) os.chdir(new_directory) print(f"Changed to {new_directory}") - + engine_ids = list(engines.keys()) # engine_ids = engine_list if engine_list is not None else engine_ids - test_folder = 'tests' - utils.run_biosimulators_remotely_and_locally(engine_ids, - os.path.basename(sedml_file_path), - os.path.basename(sbml_file_path), - os.path.join(test_folder,'d1_plots_remote'), - os.path.join(test_folder,'d1_plots_local'), - test_folder=test_folder) - - shutil.rmtree(tmp_model_dir) + test_folder = "tests" + utils.run_biosimulators_remotely_and_locally( + engine_ids, + os.path.basename(sedml_file_path), + os.path.basename(sbml_file_path), + os.path.join(test_folder, "d1_plots_remote"), + os.path.join(test_folder, "d1_plots_local"), + test_folder=test_folder, + ) + + shutil.rmtree(tmp_model_dir) if __name__ == "__main__": use_original_files = True - biomodel_id_list = ["BIOMD0000000001", - "BIOMD0000000138", - "BIOMD0000000724", - "BIOMD0000001077"] - main() \ No newline at end of file + biomodel_id_list = [ + "BIOMD0000000001", + "BIOMD0000000138", + "BIOMD0000000724", + "BIOMD0000001077", + ] + main() diff --git a/SBML/.test.validate.sbml.omt b/SBML/.test.validate.sbml.omt index 6925fc65..a19a1172 100644 --- a/SBML/.test.validate.sbml.omt +++ b/SBML/.test.validate.sbml.omt @@ -1,5 +1,5 @@ -# Script for running automated tests on OSB using github actions, see https://github.com/OpenSourceBrain/osb-model-validation +# Script for running automated tests on OSB using github actions, see https://github.com/OpenSourceBrain/osb-model-validation # This test will validate the SBML files in the current directory using: pynml -validate-sbml *.xml *.sbml target: "*.xml *.sbml" -engine: pyNeuroML_validate_sbml \ No newline at end of file +engine: pyNeuroML_validate_sbml diff --git a/SBML/tests/test_biosimulators_api.py b/SBML/tests/test_biosimulators_api.py index 1b7de141..6fae4660 100644 --- a/SBML/tests/test_biosimulators_api.py +++ b/SBML/tests/test_biosimulators_api.py @@ -1,12 +1,13 @@ #!/usr/bin/env python """Test health status of the BioSimulators API.""" -import requests import sys +import requests + biosimulations_api_url = "https://api.biosimulations.org/health" -r = requests.get(biosimulations_api_url) +r = requests.get(biosimulations_api_url) r_status = r.json()["status"] if r_status == "ok": @@ -14,4 +15,4 @@ else: exit_status = 1 -sys.exit(exit_status) \ No newline at end of file +sys.exit(exit_status) diff --git a/SBML/tests/test_biosimulators_docker.py b/SBML/tests/test_biosimulators_docker.py index 931550f2..3a3fe544 100644 --- a/SBML/tests/test_biosimulators_docker.py +++ b/SBML/tests/test_biosimulators_docker.py @@ -1,15 +1,16 @@ #!/usr/bin/env python -''' +""" use pymetadata module to create a minimal valid combine archive using LEMS_NML2_Ex9_FN.sbml and LEMS_NML2_Ex9_FN.sedml -''' +""" + import os import sys + sys.path.append(os.path.abspath(os.path.join(os.path.dirname(__file__), "..", ".."))) import utils - cwd = os.getcwd() print("Current working directory:", cwd) path_to_sbml_folder = os.path.abspath(os.path.join(cwd, os.pardir)) @@ -17,14 +18,14 @@ os.chdir(path_to_sbml_folder) print("Changed working directory to:", os.getcwd()) -sbml_file_name = 'LEMS_NML2_Ex9_FN.sbml' -#sedml_filepath = 'LEMS_NML2_Ex9_FN.sedml' #xmlns:sbml added manually -sedml_file_name = 'LEMS_NML2_Ex9_FN_missing_xmlns.sedml' #xmlns:sbml missing +sbml_file_name = "LEMS_NML2_Ex9_FN.sbml" +# sedml_filepath = 'LEMS_NML2_Ex9_FN.sedml' #xmlns:sbml added manually +sedml_file_name = "LEMS_NML2_Ex9_FN_missing_xmlns.sedml" # xmlns:sbml missing -omex_filepath = utils.create_omex(sedml_file_name,sbml_file_name) +omex_filepath = utils.create_omex(sedml_file_name, sbml_file_name) -print('Testing biosimulators-core (tellurium)') -message = utils.biosimulators_core('tellurium',omex_filepath) -print('..................') +print("Testing biosimulators-core (tellurium)") +message = utils.biosimulators_core("tellurium", omex_filepath) +print("..................") print(message) -print('Finished') +print("Finished") diff --git a/SBML/tests/test_biosimulators_local.py b/SBML/tests/test_biosimulators_local.py index d96c3968..56b9108d 100644 --- a/SBML/tests/test_biosimulators_local.py +++ b/SBML/tests/test_biosimulators_local.py @@ -5,48 +5,60 @@ It runs each engine and saves a JSON file with the log.yml file (as a dict), and the d1 plot for each engine. """ -import sys import os -sys.path.append(os.path.abspath(os.path.join(os.path.dirname(__file__), "..", ".."))) # to import utils -import utils +import sys + +sys.path.append( + os.path.abspath(os.path.join(os.path.dirname(__file__), "..", "..")) +) # to import utils import argparse import json +import utils + # Save the current working directory cwd = os.getcwd() -print('Current working directory:', cwd) +print("Current working directory:", cwd) # SBML folder is one folder up relative to cwd path_to_sbml_folder = os.path.abspath(os.path.join(cwd, os.pardir)) -print('Path to SBML folder:', path_to_sbml_folder) +print("Path to SBML folder:", path_to_sbml_folder) # change the working directory to the SBML folder (because here the SBML and SED-ML files are located) os.chdir(path_to_sbml_folder) -print('Changed working directory to:', os.getcwd()) +print("Changed working directory to:", os.getcwd()) -sbml_file_name = 'LEMS_NML2_Ex9_FN.sbml' -sedml_file_name = 'LEMS_NML2_Ex9_FN_missing_xmlns.sedml' #xmlns:sbml missing +sbml_file_name = "LEMS_NML2_Ex9_FN.sbml" +sedml_file_name = "LEMS_NML2_Ex9_FN_missing_xmlns.sedml" # xmlns:sbml missing # output_dir is set to 'd1_plots' by default but can be changed using the --output-dir argument (required to deal with GitHub Actions permission issues) -parser = argparse.ArgumentParser(description='Test compatibility of different biosimulation engines') -parser.add_argument('--output-dir',action='store',default='d1_plots',help='prefix of the output directory where the d1 plots will be saved') +parser = argparse.ArgumentParser( + description="Test compatibility of different biosimulation engines" +) +parser.add_argument( + "--output-dir", + action="store", + default="d1_plots", + help="prefix of the output directory where the d1 plots will be saved", +) args = parser.parse_args() -test_folder = 'tests' +test_folder = "tests" -d1_plots_local_dir = os.path.join(test_folder, args.output_dir + '_local') +d1_plots_local_dir = os.path.join(test_folder, args.output_dir + "_local") -print('d1 plots will be saved in:', d1_plots_local_dir) +print("d1 plots will be saved in:", d1_plots_local_dir) engine_keys = list(utils.ENGINES.keys()) -results_local = utils.run_biosimulators_locally(engine_keys, - sedml_file_name=sedml_file_name, - sbml_file_name=sbml_file_name, - d1_plots_local_dir=d1_plots_local_dir, - test_folder=test_folder) - -results_local_path = os.path.join(path_to_sbml_folder, 'tests', 'results_local.json') -with open(results_local_path, 'w') as fp: +results_local = utils.run_biosimulators_locally( + engine_keys, + sedml_file_name=sedml_file_name, + sbml_file_name=sbml_file_name, + d1_plots_local_dir=d1_plots_local_dir, + test_folder=test_folder, +) + +results_local_path = os.path.join(path_to_sbml_folder, "tests", "results_local.json") +with open(results_local_path, "w") as fp: json.dump(results_local, fp, indent=4) - \ No newline at end of file diff --git a/SBML/tests/test_biosimulators_remote.py b/SBML/tests/test_biosimulators_remote.py index d4227ec4..0eeb9397 100644 --- a/SBML/tests/test_biosimulators_remote.py +++ b/SBML/tests/test_biosimulators_remote.py @@ -2,52 +2,64 @@ """ This script tests the compatibility of different biosimulation engines with a given SBML and SED-ML file. -It runs each engine and saves the d1 plots, and a JSON file containing the log.yml file (as dict) and the +It runs each engine and saves the d1 plots, and a JSON file containing the log.yml file (as dict) and the links for accessing the remote results, for each engine. """ -import sys import os -sys.path.append(os.path.abspath(os.path.join(os.path.dirname(__file__), "..", ".."))) # to import utils -import utils +import sys + +sys.path.append( + os.path.abspath(os.path.join(os.path.dirname(__file__), "..", "..")) +) # to import utils import argparse import json +import utils # Save the current working directory cwd = os.getcwd() -print('Current working directory:', cwd) +print("Current working directory:", cwd) # SBML folder is one folder up relative to cwd path_to_sbml_folder = os.path.abspath(os.path.join(cwd, os.pardir)) -print('Path to SBML folder:', path_to_sbml_folder) +print("Path to SBML folder:", path_to_sbml_folder) # change the working directory to the SBML folder (because here the SBML and SED-ML files are located) os.chdir(path_to_sbml_folder) -print('Changed working directory to:', os.getcwd()) +print("Changed working directory to:", os.getcwd()) -sbml_file_name = 'LEMS_NML2_Ex9_FN.sbml' -sedml_file_name = 'LEMS_NML2_Ex9_FN_missing_xmlns.sedml' #xmlns:sbml missing +sbml_file_name = "LEMS_NML2_Ex9_FN.sbml" +sedml_file_name = "LEMS_NML2_Ex9_FN_missing_xmlns.sedml" # xmlns:sbml missing # output_dir is set to 'd1_plots' by default but can be changed using the --output-dir argument (required to deal with GitHub Actions permission issues) -parser = argparse.ArgumentParser(description='Test compatibility of different biosimulation engines') -parser.add_argument('--output-dir',action='store',default='d1_plots',help='prefix of the output directory where the d1 plots will be saved') +parser = argparse.ArgumentParser( + description="Test compatibility of different biosimulation engines" +) +parser.add_argument( + "--output-dir", + action="store", + default="d1_plots", + help="prefix of the output directory where the d1 plots will be saved", +) args = parser.parse_args() -test_folder = 'tests' +test_folder = "tests" -d1_plots_remote_dir = os.path.join(test_folder, args.output_dir + '_remote') +d1_plots_remote_dir = os.path.join(test_folder, args.output_dir + "_remote") -print('d1 plots will be saved in:', d1_plots_remote_dir) +print("d1 plots will be saved in:", d1_plots_remote_dir) engine_keys = list(utils.ENGINES.keys()) -results_remote = utils.run_biosimulators_remotely(engine_keys, sedml_file_name=sedml_file_name, - sbml_file_name=sbml_file_name, - d1_plots_remote_dir=d1_plots_remote_dir, - test_folder=test_folder) +results_remote = utils.run_biosimulators_remotely( + engine_keys, + sedml_file_name=sedml_file_name, + sbml_file_name=sbml_file_name, + d1_plots_remote_dir=d1_plots_remote_dir, + test_folder=test_folder, +) -results_remote_path = os.path.join(path_to_sbml_folder, 'tests', 'results_remote.json') -with open(results_remote_path, 'w') as fp: +results_remote_path = os.path.join(path_to_sbml_folder, "tests", "results_remote.json") +with open(results_remote_path, "w") as fp: json.dump(results_remote, fp, indent=4) - \ No newline at end of file diff --git a/SBML/tests/test_compatibility_biosimulators.py b/SBML/tests/test_compatibility_biosimulators.py index 6f720ea9..86ea7b06 100644 --- a/SBML/tests/test_compatibility_biosimulators.py +++ b/SBML/tests/test_compatibility_biosimulators.py @@ -6,44 +6,57 @@ The results are then displayed in a table and saved to a markdown file. """ -import sys import os -sys.path.append(os.path.abspath(os.path.join(os.path.dirname(__file__), "..", ".."))) # to import utils -import utils +import sys + +sys.path.append( + os.path.abspath(os.path.join(os.path.dirname(__file__), "..", "..")) +) # to import utils import argparse +import utils + # Save the current working directory cwd = os.getcwd() -print('Current working directory:', cwd) +print("Current working directory:", cwd) # SBML folder is one folder up relative to cwd path_to_sbml_folder = os.path.abspath(os.path.join(cwd, os.pardir)) -print('Path to SBML folder:', path_to_sbml_folder) +print("Path to SBML folder:", path_to_sbml_folder) # change the working directory to the SBML folder (because here the SBML and SED-ML files are located) os.chdir(path_to_sbml_folder) -print('Changed working directory to:', os.getcwd()) +print("Changed working directory to:", os.getcwd()) -sbml_file_name = 'LEMS_NML2_Ex9_FN.sbml' -sedml_file_name = 'LEMS_NML2_Ex9_FN_missing_xmlns.sedml' #xmlns:sbml missing +sbml_file_name = "LEMS_NML2_Ex9_FN.sbml" +sedml_file_name = "LEMS_NML2_Ex9_FN_missing_xmlns.sedml" # xmlns:sbml missing # output_dir is set to 'd1_plots' by default but can be changed using the --output-dir argument (required to deal with GitHub Actions permission issues) -parser = argparse.ArgumentParser(description='Test compatibility of different biosimulation engines') -parser.add_argument('--output-dir',action='store',default='d1_plots',help='prefix of the output directory where the d1 plots will be saved') +parser = argparse.ArgumentParser( + description="Test compatibility of different biosimulation engines" +) +parser.add_argument( + "--output-dir", + action="store", + default="d1_plots", + help="prefix of the output directory where the d1 plots will be saved", +) args = parser.parse_args() -test_folder = 'tests' +test_folder = "tests" -d1_plots_remote_dir = os.path.join(test_folder, args.output_dir + '_remote') -d1_plots_local_dir = os.path.join(test_folder, args.output_dir + '_local') +d1_plots_remote_dir = os.path.join(test_folder, args.output_dir + "_remote") +d1_plots_local_dir = os.path.join(test_folder, args.output_dir + "_local") -print('d1 plots will be saved in:', d1_plots_remote_dir, 'and', d1_plots_local_dir) +print("d1 plots will be saved in:", d1_plots_remote_dir, "and", d1_plots_local_dir) engine_keys = list(utils.ENGINES.keys()) -utils.run_biosimulators_remotely_and_locally(engine_keys, - sedml_file_name, - sbml_file_name, - d1_plots_remote_dir, - d1_plots_local_dir, - test_folder=test_folder) \ No newline at end of file +utils.run_biosimulators_remotely_and_locally( + engine_keys, + sedml_file_name, + sbml_file_name, + d1_plots_remote_dir, + d1_plots_local_dir, + test_folder=test_folder, +) diff --git a/SBML/tests/test_creation_combined_results_table.py b/SBML/tests/test_creation_combined_results_table.py index a0e49370..abb9b5de 100644 --- a/SBML/tests/test_creation_combined_results_table.py +++ b/SBML/tests/test_creation_combined_results_table.py @@ -1,52 +1,64 @@ -import sys import os -sys.path.append(os.path.abspath(os.path.join(os.path.dirname(__file__), "..", ".."))) # to import utils -import utils +import sys + +sys.path.append( + os.path.abspath(os.path.join(os.path.dirname(__file__), "..", "..")) +) # to import utils import argparse import json +import utils + # Save the current working directory cwd = os.getcwd() -print('Current working directory:', cwd) +print("Current working directory:", cwd) # SBML folder is one folder up relative to cwd path_to_sbml_folder = os.path.abspath(os.path.join(cwd, os.pardir)) -print('Path to SBML folder:', path_to_sbml_folder) +print("Path to SBML folder:", path_to_sbml_folder) # change the working directory to the SBML folder (because here the SBML and SED-ML files are located) os.chdir(path_to_sbml_folder) -print('Changed working directory to:', os.getcwd()) +print("Changed working directory to:", os.getcwd()) -sbml_file_name = 'LEMS_NML2_Ex9_FN.sbml' -sedml_file_name = 'LEMS_NML2_Ex9_FN_missing_xmlns.sedml' #xmlns:sbml missing +sbml_file_name = "LEMS_NML2_Ex9_FN.sbml" +sedml_file_name = "LEMS_NML2_Ex9_FN_missing_xmlns.sedml" # xmlns:sbml missing # output_dir is set to 'd1_plots' by default but can be changed using the --output-dir argument (required to deal with GitHub Actions permission issues) -parser = argparse.ArgumentParser(description='Test compatibility of different biosimulation engines') -parser.add_argument('--output-dir',action='store',default='d1_plots',help='prefix of the output directory where the d1 plots will be saved') +parser = argparse.ArgumentParser( + description="Test compatibility of different biosimulation engines" +) +parser.add_argument( + "--output-dir", + action="store", + default="d1_plots", + help="prefix of the output directory where the d1 plots will be saved", +) args = parser.parse_args() -test_folder = 'tests' +test_folder = "tests" -d1_plots_local_dir = os.path.join(test_folder, args.output_dir + '_local') -d1_plots_remote_dir = os.path.join(test_folder, args.output_dir + '_remote') +d1_plots_local_dir = os.path.join(test_folder, args.output_dir + "_local") +d1_plots_remote_dir = os.path.join(test_folder, args.output_dir + "_remote") results_paths = { - "local": os.path.join(path_to_sbml_folder, 'tests', 'results_local.json'), - "remote": os.path.join(path_to_sbml_folder, 'tests', 'results_remote.json') + "local": os.path.join(path_to_sbml_folder, "tests", "results_local.json"), + "remote": os.path.join(path_to_sbml_folder, "tests", "results_remote.json"), } results = {} for key, path in results_paths.items(): - with open(path, 'r') as f: + with open(path, "r") as f: results[key] = json.load(f) -results_table = utils.create_combined_results_table(results["remote"], - results["local"], - sedml_file_name, - sbml_file_name, - d1_plots_local_dir, - d1_plots_remote_dir, - test_folder='tests') +results_table = utils.create_combined_results_table( + results["remote"], + results["local"], + sedml_file_name, + sbml_file_name, + d1_plots_local_dir, + d1_plots_remote_dir, + test_folder="tests", +) print(results_table) - \ No newline at end of file diff --git a/SBML/tests/test_tellurium.py b/SBML/tests/test_tellurium.py index 8f2e101d..d2c86426 100644 --- a/SBML/tests/test_tellurium.py +++ b/SBML/tests/test_tellurium.py @@ -1,18 +1,19 @@ - -import tellurium as te -te.setDefaultPlottingEngine('matplotlib') import os import sys +import tellurium as te + +te.setDefaultPlottingEngine("matplotlib") + path_to_sbml_folder = os.path.abspath(os.path.join(os.getcwd(), os.pardir)) # change the working directory to the SBML folder os.chdir(path_to_sbml_folder) -print('Changed working directory to:', os.getcwd()) +print("Changed working directory to:", os.getcwd()) -sedml_file='LEMS_NML2_Ex9_FN.sedml' -if len(sys.argv)>1: - sedml_file=sys.argv[1] +sedml_file = "LEMS_NML2_Ex9_FN.sedml" +if len(sys.argv) > 1: + sedml_file = sys.argv[1] # For technical reasons, any software which uses libSEDML # must provide a custom build - Tellurium uses tesedml @@ -22,16 +23,22 @@ import tesedml as libsedml sedml_doc = libsedml.readSedML(sedml_file) n_errors = sedml_doc.getErrorLog().getNumFailsWithSeverity(libsedml.LIBSEDML_SEV_ERROR) -print('Read SED-ML file %s, number of errors: %i'%(sedml_file,n_errors)) +print("Read SED-ML file %s, number of errors: %i" % (sedml_file, n_errors)) if n_errors > 0: print(sedml_doc.getErrorLog().toString()) - + print(sedml_doc) print(dir(sedml_doc)) print(sedml_doc.toSed()) -createOutputs = '-nogui' not in sys.argv +createOutputs = "-nogui" not in sys.argv # execute SED-ML using Tellurium -te.executeSEDML(sedml_doc.toSed(), workingDir='.', saveOutputs=True, outputDir='.', createOutputs=createOutputs) \ No newline at end of file +te.executeSEDML( + sedml_doc.toSed(), + workingDir=".", + saveOutputs=True, + outputDir=".", + createOutputs=createOutputs, +) diff --git a/SBML/tests/validateAll.sh b/SBML/tests/validateAll.sh index f54b99a2..dcfa0691 100755 --- a/SBML/tests/validateAll.sh +++ b/SBML/tests/validateAll.sh @@ -16,4 +16,4 @@ echo "All XML files are valid SBML" pynml -validate-sedml *.sedml -echo "All SEDML files are valid" \ No newline at end of file +echo "All SEDML files are valid" diff --git a/test_suite/process_test_suite.py b/test_suite/process_test_suite.py index 9b211172..cecc00f7 100755 --- a/test_suite/process_test_suite.py +++ b/test_suite/process_test_suite.py @@ -7,27 +7,27 @@ https://github.com/sbmlteam/sbml-test-suite/releases/download/3.4.0/semantic_tests_with_sedml_and_graphs.v3.4.0.zip """ -import os import glob -from pyneuroml.sbml import validate_sbml_files -from pyneuroml.sedml import validate_sedml_files -import matplotlib +import os import sys import warnings -import re + +import matplotlib +from pyneuroml.sbml import validate_sbml_files +from pyneuroml.sedml import validate_sedml_files sys.path.append("..") import utils -md_description = \ -''' +md_description = """ Markdown file description goes here. -''' +""" -#suppress stdout output from validation functions to make progress counter readable +# suppress stdout output from validation functions to make progress counter readable suppress_stdout = True + def parse_arguments(): "Parse command line arguments" @@ -89,43 +89,54 @@ def parse_arguments(): return parser.parse_args() -def add_case_url(case,fpath,url_base): - ''' +def add_case_url(case, fpath, url_base): + """ insert URL link to original test case file online effectively replaces args.suite_path with args.suite_url_base this should produce a valid link for all the main intended use cases of testing the sbml test suite using the default args but will not handle all possible variations of globs and base directories in which case it should be disabled by setting --suite-url-base='' - ''' + """ - url = os.path.join(url_base,fpath) - new_item = f'[{case}]({url})' + url = os.path.join(url_base, fpath) + new_item = f"[{case}]({url})" return new_item + def process_cases(args): """ process the test cases and write results out as a markdown table with links to the test case files online (as noted above the sedml files are actually in a zip file) with a summary of how many cases were tested and how many tests failed """ - # set up the markdown table - column_labels = "case|valid-sbml|valid-sbml-units|valid-sedml|tellurium|xmlns-sbml-missing" - column_keys = "case|valid_sbml|valid_sbml_units|valid_sedml|tellurium_outcome|xmlns_sbml_missing" - mtab = utils.MarkdownTable(column_labels, column_keys) + # set up the markdown table + column_labels = ( + "case|valid-sbml|valid-sbml-units|valid-sedml|tellurium|xmlns-sbml-missing" + ) + column_keys = "case|valid_sbml|valid_sbml_units|valid_sedml|tellurium_outcome|xmlns_sbml_missing" + mtab = utils.MarkdownTable(column_labels, column_keys) # set the path to the test suite - starting_dir = os.getcwd() # where results will be written - os.chdir(args.suite_path) # change to test suite directory - suite_path_abs = os.getcwd() # absolute path to test suite + starting_dir = os.getcwd() # where results will be written + os.chdir(args.suite_path) # change to test suite directory + suite_path_abs = os.getcwd() # absolute path to test suite # suppress interactive plots and load sup module to suppress stdout sup = utils.SuppressOutput(stdout=suppress_stdout) - - matplotlib.use("agg") + + matplotlib.use("agg") # Suppress specific UserWarning caused by matplotlib (required to suppress interactive plots) - warnings.filterwarnings("ignore", category=UserWarning, message="FigureCanvasAgg is non-interactive, and thus cannot be shown") - subfolders = os.listdir(suite_path_abs) if args.limit == 0 else os.listdir(suite_path_abs)[:args.limit] + warnings.filterwarnings( + "ignore", + category=UserWarning, + message="FigureCanvasAgg is non-interactive, and thus cannot be shown", + ) + subfolders = ( + os.listdir(suite_path_abs) + if args.limit == 0 + else os.listdir(suite_path_abs)[: args.limit] + ) for subfolder in subfolders: # if sbml_level_version is empty string (default), find the highest level and version in the folder @@ -133,54 +144,76 @@ def process_cases(args): sedml_file_paths = glob.glob(os.path.join(subfolder, "*-sbml-*sedml.xml")) # get last entry in list of sedml_file_paths (because it has the highest level and version number considering the alphabetical order and naming convention) sedml_file_path = sedml_file_paths[-1] if sedml_file_paths != [] else [] - sbml_file_path = sedml_file_path.replace("-sedml.xml",".xml") if sedml_file_path != [] else [] + sbml_file_path = ( + sedml_file_path.replace("-sedml.xml", ".xml") + if sedml_file_path != [] + else [] + ) else: # find relevant files in the subfolder sbml_file_name = f"*-sbml-{args.sbml_level_version}.xml" sedml_file_name = f"*-sbml-{args.sbml_level_version}-sedml.xml" - sbml_file_path = glob.glob(os.path.join(subfolder, sbml_file_name))[0] if len(glob.glob(os.path.join(subfolder, sbml_file_name))) > 0 else [] - sedml_file_path = glob.glob(os.path.join(subfolder, sedml_file_name))[0] if len(glob.glob(os.path.join(subfolder, sedml_file_name))) > 0 else [] - + sbml_file_path = ( + glob.glob(os.path.join(subfolder, sbml_file_name))[0] + if len(glob.glob(os.path.join(subfolder, sbml_file_name))) > 0 + else [] + ) + sedml_file_path = ( + glob.glob(os.path.join(subfolder, sedml_file_name))[0] + if len(glob.glob(os.path.join(subfolder, sedml_file_name))) > 0 + else [] + ) + if sbml_file_path == [] or sedml_file_path == []: - print(f"Folder {subfolder} has no SBML or SED-ML files {args.sbml_level_version}") - continue + print( + f"Folder {subfolder} has no SBML or SED-ML files {args.sbml_level_version}" + ) + continue print(f"Processing {sbml_file_path} and {sedml_file_path}") - + # create table with results mtab.new_row() - mtab['case'] = add_case_url(sbml_file_path, sbml_file_path, args.suite_url_base) \ - if args.suite_url_base != '' else sbml_file_path - - # suppress stdout output from validation functions to make progress counter readable - sup.suppress() - mtab['valid_sbml'] = validate_sbml_files([sbml_file_path], strict_units=False) - mtab['valid_sbml_units'] = validate_sbml_files([sbml_file_path], strict_units=True) - mtab['valid_sedml'] = validate_sedml_files([sedml_file_path]) - mtab['tellurium_outcome'] = utils.test_engine("tellurium",sedml_file_path) # run tellurium directly - sup.restore() + mtab["case"] = ( + add_case_url(sbml_file_path, sbml_file_path, args.suite_url_base) + if args.suite_url_base != "" + else sbml_file_path + ) - mtab['xmlns_sbml_missing'] = utils.xmlns_sbml_attribute_missing(sedml_file_path) - matplotlib.pyplot.close('all') # supresses error from building up plots - - #give failure counts - for key in ['valid_sbml','valid_sbml_units','valid_sedml']: - mtab.add_count(key,lambda x:x==False,'n_fail={count}') - mtab.transform_column(key,lambda x:'pass' if x else 'FAIL') + # suppress stdout output from validation functions to make progress counter readable + sup.suppress() + mtab["valid_sbml"] = validate_sbml_files([sbml_file_path], strict_units=False) + mtab["valid_sbml_units"] = validate_sbml_files( + [sbml_file_path], strict_units=True + ) + mtab["valid_sedml"] = validate_sedml_files([sedml_file_path]) + mtab["tellurium_outcome"] = utils.test_engine( + "tellurium", sedml_file_path + ) # run tellurium directly + sup.restore() + + mtab["xmlns_sbml_missing"] = utils.xmlns_sbml_attribute_missing(sedml_file_path) + matplotlib.pyplot.close("all") # supresses error from building up plots + + # give failure counts + for key in ["valid_sbml", "valid_sbml_units", "valid_sedml"]: + mtab.add_count(key, lambda x: not x, "n_fail={count}") + mtab.transform_column(key, lambda x: "pass" if x else "FAIL") # add counts for cases and missing xmlns_sbml attributes - mtab.add_count('case',lambda _:True,'n={count}') - mtab.add_count('xmlns_sbml_missing',lambda x:x==True,'n={count}') + mtab.add_count("case", lambda _: True, "n={count}") + mtab.add_count("xmlns_sbml_missing", lambda x: x, "n={count}") - #process engine outcomes column(s) - mtab.simple_summary('tellurium_outcome') - mtab.transform_column('tellurium_outcome') + # process engine outcomes column(s) + mtab.simple_summary("tellurium_outcome") + mtab.transform_column("tellurium_outcome") - #write out to file + # write out to file os.chdir(starting_dir) with open(args.output_file, "w") as fout: fout.write(md_description) mtab.write(fout) + if __name__ == "__main__": args = parse_arguments() diff --git a/test_suite/test_test_suite_compatibility_biosimulators.py b/test_suite/test_test_suite_compatibility_biosimulators.py index 189fe00c..6b1919cd 100644 --- a/test_suite/test_test_suite_compatibility_biosimulators.py +++ b/test_suite/test_test_suite_compatibility_biosimulators.py @@ -7,26 +7,26 @@ https://github.com/sbmlteam/sbml-test-suite/releases/download/3.4.0/semantic_tests_with_sedml_and_graphs.v3.4.0.zip """ -import os import glob -from pyneuroml.sbml import validate_sbml_files -from pyneuroml.sedml import validate_sedml_files -import sys +import os import shutil +import sys + sys.path.append("..") import utils + engines = utils.ENGINES -md_description = \ -''' +md_description = """ Markdown file description goes here. -''' +""" -#suppress stdout output from validation functions to make progress counter readable +# suppress stdout output from validation functions to make progress counter readable suppress_stdout = True + def parse_arguments(): "Parse command line arguments" @@ -79,6 +79,7 @@ def parse_arguments(): return parser.parse_args() + def process_cases(args): """ process the test cases and write results out as a markdown table @@ -100,19 +101,22 @@ def process_cases(args): python test_test_suite_compatibility_biosimulators.py --cases 00001 01186 --suite-path /path/to/sbml-test-suite/cases/semantic --sbml-level_version highest """ - starting_dir = os.getcwd() # where results will be written + starting_dir = os.getcwd() # where results will be written - os.chdir(args.suite_path) # change to test suite directory - suite_path_abs = os.getcwd() # absolute path to test suite + os.chdir(args.suite_path) # change to test suite directory + suite_path_abs = os.getcwd() # absolute path to test suite if args.cases != []: subfolders = args.cases else: - subfolders = os.listdir(suite_path_abs) if args.limit == 0 else os.listdir(suite_path_abs)[:args.limit] - - print(f"Processing {len(subfolders)} subfolders in {args.suite_path}") - test_folder = 'tests' + subfolders = ( + os.listdir(suite_path_abs) + if args.limit == 0 + else os.listdir(suite_path_abs)[: args.limit] + ) + print(f"Processing {len(subfolders)} subfolders in {args.suite_path}") + test_folder = "tests" for subfolder in subfolders: # create an equivalently named folder in the starting directory @@ -124,44 +128,68 @@ def process_cases(args): sedml_file_paths = glob.glob(os.path.join(subfolder, "*-sbml-*sedml.xml")) # get last entry in list of sedml_file_paths (because it has the highest level and version number considering the alphabetical order and naming convention) sedml_file_path = sedml_file_paths[-1] if sedml_file_paths != [] else [] - sbml_file_path = sedml_file_path.replace("-sedml.xml",".xml") if sedml_file_path != [] else [] + sbml_file_path = ( + sedml_file_path.replace("-sedml.xml", ".xml") + if sedml_file_path != [] + else [] + ) else: sbml_file_name = f"*-sbml-{args.sbml_level_version}.xml" sedml_file_name = f"*-sbml-{args.sbml_level_version}-sedml.xml" - sbml_file_path = glob.glob(os.path.join(subfolder, sbml_file_name))[0] if len(glob.glob(os.path.join(subfolder, sbml_file_name))) > 0 else [] - sedml_file_path = glob.glob(os.path.join(subfolder, sedml_file_name))[0] if len(glob.glob(os.path.join(subfolder, sedml_file_name))) > 0 else [] - + sbml_file_path = ( + glob.glob(os.path.join(subfolder, sbml_file_name))[0] + if len(glob.glob(os.path.join(subfolder, sbml_file_name))) > 0 + else [] + ) + sedml_file_path = ( + glob.glob(os.path.join(subfolder, sedml_file_name))[0] + if len(glob.glob(os.path.join(subfolder, sedml_file_name))) > 0 + else [] + ) + if sbml_file_path == [] or sedml_file_path == []: - print(f"Folder {subfolder} has no SBML or SED-ML files {args.sbml_level_version}") + print( + f"Folder {subfolder} has no SBML or SED-ML files {args.sbml_level_version}" + ) continue new_subfolder = "test_" + subfolder new_directory = os.path.join(starting_dir, new_subfolder) os.makedirs(new_directory, exist_ok=True) - print (f"Copying {sbml_file_path} and {sedml_file_path} to {starting_dir}/{subfolder}") - new_sbml_file_path = os.path.join(new_directory, os.path.basename(sbml_file_path)) - new_sedml_file_path = os.path.join(new_directory, os.path.basename(sedml_file_path)) + print( + f"Copying {sbml_file_path} and {sedml_file_path} to {starting_dir}/{subfolder}" + ) + new_sbml_file_path = os.path.join( + new_directory, os.path.basename(sbml_file_path) + ) + new_sedml_file_path = os.path.join( + new_directory, os.path.basename(sedml_file_path) + ) shutil.copy(sbml_file_path, new_sbml_file_path) shutil.copy(sedml_file_path, new_sedml_file_path) os.chdir(new_directory) print(f"Changed to {new_directory}") - engine_list = list(engines.keys()) + engine_list = list(engines.keys()) # engine_list = engine_list[:5] - - utils.run_biosimulators_remotely_and_locally(engine_list, - os.path.basename(sedml_file_path), - os.path.basename(sbml_file_path), - os.path.join(test_folder,'d1_plots_remote'), - os.path.join(test_folder,'d1_plots_local'), - test_folder=test_folder) + + utils.run_biosimulators_remotely_and_locally( + engine_list, + os.path.basename(sedml_file_path), + os.path.basename(sbml_file_path), + os.path.join(test_folder, "d1_plots_remote"), + os.path.join(test_folder, "d1_plots_local"), + test_folder=test_folder, + ) if __name__ == "__main__": - args = parse_arguments() - args.cases = ['00001','01186'] - args.sbml_level_version = 'l3v2' + args = parse_arguments() + args.cases = ["00001", "01186"] + args.sbml_level_version = "l3v2" user_folder = os.path.expanduser("~") - args.suite_path = os.path.join(user_folder, "Documents", "compbiolibs", "SBML_test_suite", "semantic") + args.suite_path = os.path.join( + user_folder, "Documents", "compbiolibs", "SBML_test_suite", "semantic" + ) process_cases(args) diff --git a/utils/__init__.py b/utils/__init__.py index d99278a9..caec12dc 100644 --- a/utils/__init__.py +++ b/utils/__init__.py @@ -1,206 +1,206 @@ -import shutil +import glob +import hashlib +import json import os import pickle -import hashlib -import sys -from dataclasses import dataclass -from pyneuroml import tellurium +import random import re -import requests +import shutil +import sys +import time from collections import defaultdict +from dataclasses import dataclass from pathlib import Path -import random -from pymetadata import omex + import docker -import yaml import libsbml import libsedml -import glob -from pyneuroml import biosimulations import pandas as pd -from requests.exceptions import HTTPError -import json +import requests +import yaml +from pymetadata import omex +from pyneuroml import biosimulations, tellurium +from requests.exceptions import HTTPError ENGINES = { - 'amici': { - 'formats': [('sbml', 'sedml')], - 'url': 'https://docs.biosimulators.org/Biosimulators_AMICI/', - 'status': "", - 'name': "AMICI" + "amici": { + "formats": [("sbml", "sedml")], + "url": "https://docs.biosimulators.org/Biosimulators_AMICI/", + "status": "", + "name": "AMICI", }, - 'brian2': { - 'formats': [('nml', 'sedml'), ('lems', 'sedml')], - 'url': 'https://docs.biosimulators.org/Biosimulators_pyNeuroML/', - 'status': "", - 'name': "Brian 2" + "brian2": { + "formats": [("nml", "sedml"), ("lems", "sedml")], + "url": "https://docs.biosimulators.org/Biosimulators_pyNeuroML/", + "status": "", + "name": "Brian 2", }, - 'bionetgen': { - 'formats': [('bngl', 'sedml')], - 'url': 'https://docs.biosimulators.org/Biosimulators_BioNetGen/', - 'status': "", - 'name': "BioNetGen" + "bionetgen": { + "formats": [("bngl", "sedml")], + "url": "https://docs.biosimulators.org/Biosimulators_BioNetGen/", + "status": "", + "name": "BioNetGen", }, - 'boolnet': { - 'formats': [('sbmlqual', 'sedml')], - 'url': 'https://docs.biosimulators.org/Biosimulators_BoolNet/', - 'status': "", - 'name': "BoolNet" + "boolnet": { + "formats": [("sbmlqual", "sedml")], + "url": "https://docs.biosimulators.org/Biosimulators_BoolNet/", + "status": "", + "name": "BoolNet", }, - 'cbmpy': { - 'formats': [('sbml', 'sedml')], - 'url': 'https://docs.biosimulators.org/Biosimulators_CBMPy/', - 'status': "", - 'name': "CBMPy" + "cbmpy": { + "formats": [("sbml", "sedml")], + "url": "https://docs.biosimulators.org/Biosimulators_CBMPy/", + "status": "", + "name": "CBMPy", }, - 'cobrapy': { - 'formats': [('sbml', 'sedml')], - 'url': 'https://docs.biosimulators.org/Biosimulators_COBRApy/', - 'status': "Only allows steady state simulations", - 'name': "COBRApy" + "cobrapy": { + "formats": [("sbml", "sedml")], + "url": "https://docs.biosimulators.org/Biosimulators_COBRApy/", + "status": "Only allows steady state simulations", + "name": "COBRApy", }, - 'copasi': { - 'formats': [('sbml', 'sedml')], - 'url': 'https://docs.biosimulators.org/Biosimulators_COPASI/', - 'status': "", - 'name': "COPASI" + "copasi": { + "formats": [("sbml", "sedml")], + "url": "https://docs.biosimulators.org/Biosimulators_COPASI/", + "status": "", + "name": "COPASI", }, - 'gillespy2': { - 'formats': [('sbml', 'sedml')], - 'url': 'https://docs.biosimulators.org/Biosimulators_GillesPy2/', - 'status': "", - 'name': "GillesPy2" + "gillespy2": { + "formats": [("sbml", "sedml")], + "url": "https://docs.biosimulators.org/Biosimulators_GillesPy2/", + "status": "", + "name": "GillesPy2", }, - 'ginsim': { - 'formats': [('sbmlqual', 'sedml')], - 'url': 'https://docs.biosimulators.org/Biosimulators_GINsim/', - 'status': "", - 'name': "GINsim" + "ginsim": { + "formats": [("sbmlqual", "sedml")], + "url": "https://docs.biosimulators.org/Biosimulators_GINsim/", + "status": "", + "name": "GINsim", }, - 'libsbmlsim': { - 'formats': [('sbml', 'sedml')], - 'url': 'https://docs.biosimulators.org/Biosimulators_LibSBMLSim/', - 'status': "", - 'name': "LibSBMLSim" + "libsbmlsim": { + "formats": [("sbml", "sedml")], + "url": "https://docs.biosimulators.org/Biosimulators_LibSBMLSim/", + "status": "", + "name": "LibSBMLSim", }, - 'masspy': { - 'formats': [('sbml', 'sedml')], - 'url': 'https://docs.biosimulators.org/Biosimulators_MASSpy/', - 'status': "", - 'name': "MASSpy" + "masspy": { + "formats": [("sbml", "sedml")], + "url": "https://docs.biosimulators.org/Biosimulators_MASSpy/", + "status": "", + "name": "MASSpy", }, - 'netpyne': { - 'formats': [('nml', 'sedml'), ('lems', 'sedml')], - 'url': 'https://docs.biosimulators.org/Biosimulators_pyNeuroML/', - 'status': "", - 'name': "NetPyNE" + "netpyne": { + "formats": [("nml", "sedml"), ("lems", "sedml")], + "url": "https://docs.biosimulators.org/Biosimulators_pyNeuroML/", + "status": "", + "name": "NetPyNE", }, - 'neuron': { - 'formats': [('nml', 'sedml'), ('lems', 'sedml')], - 'url': 'https://docs.biosimulators.org/Biosimulators_pyNeuroML/', - 'status': "", - 'name': "NEURON" + "neuron": { + "formats": [("nml", "sedml"), ("lems", "sedml")], + "url": "https://docs.biosimulators.org/Biosimulators_pyNeuroML/", + "status": "", + "name": "NEURON", }, - 'opencor': { - 'formats': [('cellml', 'sedml')], - 'url': 'https://docs.biosimulators.org/Biosimulators_OpenCOR/', - 'status': "", - 'name': "OpenCOR" + "opencor": { + "formats": [("cellml", "sedml")], + "url": "https://docs.biosimulators.org/Biosimulators_OpenCOR/", + "status": "", + "name": "OpenCOR", }, - 'pyneuroml': { - 'formats': [('nml', 'sedml'), ('lems', 'sedml')], - 'url': 'https://docs.biosimulators.org/Biosimulators_pyNeuroML/', - 'status': "", - 'name': "pyNeuroML" + "pyneuroml": { + "formats": [("nml", "sedml"), ("lems", "sedml")], + "url": "https://docs.biosimulators.org/Biosimulators_pyNeuroML/", + "status": "", + "name": "pyNeuroML", }, - 'pysces': { - 'formats': [('sbml', 'sedml')], - 'url': 'https://docs.biosimulators.org/Biosimulators_PySCeS/', - 'status': "", - 'name': "PySCeS" + "pysces": { + "formats": [("sbml", "sedml")], + "url": "https://docs.biosimulators.org/Biosimulators_PySCeS/", + "status": "", + "name": "PySCeS", }, - 'rbapy': { - 'formats': [('rbapy', 'sedml')], - 'url': 'https://docs.biosimulators.org/Biosimulators_RBApy/', - 'status': "", - 'name': "RBApy" + "rbapy": { + "formats": [("rbapy", "sedml")], + "url": "https://docs.biosimulators.org/Biosimulators_RBApy/", + "status": "", + "name": "RBApy", }, - 'smoldyn': { - 'formats': [('smoldyn', 'sedml')], - 'url': 'https://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api', - 'status': "", - 'name': "Smoldyn" + "smoldyn": { + "formats": [("smoldyn", "sedml")], + "url": "https://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api", + "status": "", + "name": "Smoldyn", }, - 'tellurium': { - 'formats': [('sbml', 'sedml')], - 'url': 'https://docs.biosimulators.org/Biosimulators_tellurium/', - 'status': "", - 'name': "Tellurium" + "tellurium": { + "formats": [("sbml", "sedml")], + "url": "https://docs.biosimulators.org/Biosimulators_tellurium/", + "status": "", + "name": "Tellurium", }, - 'vcell': { - 'formats': [('sbml', 'sedml'),('bngl', 'sedml')], - 'url': 'https://github.com/virtualcell/vcell', - 'status': "", - 'name': "VCell" + "vcell": { + "formats": [("sbml", "sedml"), ("bngl", "sedml")], + "url": "https://github.com/virtualcell/vcell", + "status": "", + "name": "VCell", + }, + "xpp": { + "formats": [("xpp", "sedml")], + "url": "https://docs.biosimulators.org/Biosimulators_XPP/", + "status": "", + "name": "XPP", }, - 'xpp': { - 'formats': [('xpp', 'sedml')], - 'url': 'https://docs.biosimulators.org/Biosimulators_XPP/', - 'status': "", - 'name': "XPP" - } } TYPES = { - 'sbml':'SBML',\ - 'sedml':'SED-ML',\ - 'nml':'NeuroML',\ - 'lems':'LEMS',\ - 'sbmlqual':'SBML-qual',\ - 'bngl':'BNGL',\ - 'rbapy':'RBApy',\ - 'xpp':'XPP',\ - 'smoldyn':'Smoldyn',\ - 'cellml':'CellML',\ - 'xml':'XML'\ - } + "sbml": "SBML", + "sedml": "SED-ML", + "nml": "NeuroML", + "lems": "LEMS", + "sbmlqual": "SBML-qual", + "bngl": "BNGL", + "rbapy": "RBApy", + "xpp": "XPP", + "smoldyn": "Smoldyn", + "cellml": "CellML", + "xml": "XML", +} # define the column headers for the markdown table -ERROR = 'Error' -PASS_FAIL = 'pass / FAIL' -TYPE = 'Type' -COMPAT = 'Compatibility' -D1 = 'd1' -ENGINE = 'Engine' - -#define error categories for detailed error counting per engine +ERROR = "Error" +PASS_FAIL = "pass / FAIL" +TYPE = "Type" +COMPAT = "Compatibility" +D1 = "d1" +ENGINE = "Engine" + +# define error categories for detailed error counting per engine # (currently only tellurium) # key is the tag/category used to report the category, value is a regex matching the error message # see MarkdownTable.process_engine_outcomes # TODO: use error categories in process_log_yml_dict -error_categories=\ -{ - "tellurium": - { - "algebraic":"^Unable to support algebraic rules.", - "delay":"^Unable to support delay differential equations.", - "ASTNode":"^Unknown ASTNode type of", - "stochiometry":"^Mutable stochiometry for species which appear multiple times in a single reaction", - "float":"^'float' object is not callable", - "SpeciesRef":"is not a named SpeciesReference", - "reset":"reset", - "SEDMLfile":"^failed to validate SEDML file", - "NoSBMLelement":"^No sbml element exists", - "CV_ERR_FAILURE":"CV_ERR_FAILURE", - "CV_TOO_MUCH_WORK":"CV_TOO_MUCH_WORK", - "CV_CONV_FAILURE":"CV_CONV_FAILURE", - "CV_ILL_INPUT":"CV_ILL_INPUT", - "OutOfRange":"list index out of range", - }, +error_categories = { + "tellurium": { + "algebraic": "^Unable to support algebraic rules.", + "delay": "^Unable to support delay differential equations.", + "ASTNode": "^Unknown ASTNode type of", + "stochiometry": "^Mutable stochiometry for species which appear multiple times in a single reaction", + "float": "^'float' object is not callable", + "SpeciesRef": "is not a named SpeciesReference", + "reset": "reset", + "SEDMLfile": "^failed to validate SEDML file", + "NoSBMLelement": "^No sbml element exists", + "CV_ERR_FAILURE": "CV_ERR_FAILURE", + "CV_TOO_MUCH_WORK": "CV_TOO_MUCH_WORK", + "CV_CONV_FAILURE": "CV_CONV_FAILURE", + "CV_ILL_INPUT": "CV_ILL_INPUT", + "OutOfRange": "list index out of range", + }, } + def get_entry_format(file_path, file_type): - ''' + """ Get the entry format for a file. Args: @@ -209,12 +209,12 @@ def get_entry_format(file_path, file_type): Returns: :obj:`str`: entry format - ''' + """ - if file_type == 'SBML': + if file_type == "SBML": file_l = libsbml.readSBML(file_path).getLevel() file_v = libsbml.readSBML(file_path).getVersion() - elif file_type == 'SEDML': + elif file_type == "SEDML": file_l = libsedml.readSedML(file_path).getLevel() file_v = libsedml.readSedML(file_path).getVersion() else: @@ -227,116 +227,127 @@ def get_entry_format(file_path, file_type): return file_entry_format + def temp_sedml_file_if_not_empty(sedml_filepath, temp_sedml_filepath): - """ + """ If the temp_sedml_filepath is not empty, return its content, otherwise return the original content of the sedml file """ sedstr = "" if temp_sedml_filepath: if os.path.exists(temp_sedml_filepath): - with open(temp_sedml_filepath, 'r') as file: - sedstr = file.read() - + with open(temp_sedml_filepath, "r") as file: + sedstr = file.read() + if sedstr == "": - with open(sedml_filepath, 'r') as file: + with open(sedml_filepath, "r") as file: sedstr = file.read() return sedstr + def add_xmlns_sbml_attribute(sedml_filepath, sbml_filepath, temp_sedml_filepath=None): - ''' + """ add an xmlns:sbml attribute to the sedml file that matches the sbml file raise an error if the attribute is already present output fixed file to output_filepath which defaults to sedml_filepath If no temp_sedml_filepath is provided, the original sedml file is overwritten. - ''' + """ sed_str = temp_sedml_file_if_not_empty(sedml_filepath, temp_sedml_filepath) - m = re.search(r']*>', sed_str) + m = re.search(r"]*>", sed_str) - if m == None: - raise ValueError(f'Invalid SedML file: main tag not found in {sedml_filepath}') + if m is None: + raise ValueError( + f"Invalid SedML file: main tag not found in {sedml_filepath}" + ) if "xmlns:sbml" in m.group(): - raise ValueError(f'xmlns:sbml attribute already present in file {sedml_filepath}') + raise ValueError( + f"xmlns:sbml attribute already present in file {sedml_filepath}" + ) - with open(sbml_filepath, 'r') as file: + with open(sbml_filepath, "r") as file: sbml_str = file.read() sbml_xmlns = re.search(r'xmlns="([^"]*)"', sbml_str).group(1) missing_sbml_attribute = 'xmlns:sbml="' + sbml_xmlns + '"' - sed_str = re.sub(r']*>', sedstr) + m = re.search(r"]*>", sedstr) - if m == None: - raise ValueError(f'Invalid SedML file: main tag not found in {sedml_filepath}') + if m is None: + raise ValueError( + f"Invalid SedML file: main tag not found in {sedml_filepath}" + ) - location = m.span()[1]-1 - with open(sbml_filepath, 'r') as file: + location = m.span()[1] - 1 + with open(sbml_filepath, "r") as file: sbml_str = file.read() fbc_xmlns = re.search(r'xmlns:fbc="([^"]*)"', sbml_str).group(1) missing_fbc_attribute = 'xmlns:fbc="' + fbc_xmlns + '"' - sedstr = sedstr[:location] + ' ' + missing_fbc_attribute + sedstr[location:] + sedstr = sedstr[:location] + " " + missing_fbc_attribute + sedstr[location:] - if temp_sedml_filepath == None: + if temp_sedml_filepath is None: temp_sedml_filepath = sedml_filepath - with open(temp_sedml_filepath,"w") as fout: + with open(temp_sedml_filepath, "w") as fout: fout.write(sedstr) def xmlns_sbml_attribute_missing(sedml_filepath): - ''' + """ True if the xmlns:sbml attribute is missing from the main sedml tag - ''' + """ - with open(sedml_filepath, 'r') as file: + with open(sedml_filepath, "r") as file: sedstr = file.read() - m = re.search(r']*>', sedstr) + m = re.search(r"]*>", sedstr) + + if m is None: + raise ValueError( + f"Invalid SedML file: main tag not found in {sedml_filepath}" + ) - if m == None: - raise ValueError(f'Invalid SedML file: main tag not found in {sedml_filepath}') - if "xmlns:sbml" not in m.group(): return True else: return False - -def xmlns_fbc_attribute_missing(sbml_filepath,sedml_filepath): - ''' + +def xmlns_fbc_attribute_missing(sbml_filepath, sedml_filepath): + """ True if the xmlns:fbc attribute is missing from the main sedml tag of the SED-ML file but present in the SBML file - ''' - - with open(sbml_filepath, 'r', encoding='utf-8') as file: + """ + + with open(sbml_filepath, "r", encoding="utf-8") as file: sbmlstr = file.read() - with open(sedml_filepath, 'r', encoding='utf-8') as file: + with open(sedml_filepath, "r", encoding="utf-8") as file: sedstr = file.read() - + sbmlstr_fbc = re.search(r'xmlns:fbc="([^"]*)"', sbmlstr) sedstr_fbc = re.search(r'xmlns:fbc="([^"]*)"', sedstr) @@ -347,45 +358,51 @@ def xmlns_fbc_attribute_missing(sbml_filepath,sedml_filepath): def get_temp_file(): - ''' + """ create a temporary filename in the current working directory - ''' + """ return f"tmp{random.randrange(1000000)}" + def remove_spaces_from_filename(file_path): - ''' + """ create another file with the same content but with filename spaces replaced by underscores - ''' + """ dir_name = os.path.dirname(file_path) - if ' ' in dir_name: - raise ValueError(f'File directory path should not contain spaces: {dir_name}') + if " " in dir_name: + raise ValueError(f"File directory path should not contain spaces: {dir_name}") old_filename = os.path.basename(file_path) - if ' ' not in old_filename: + if " " not in old_filename: return file_path - if ' ' in old_filename: - new_filename = old_filename.replace(' ', '_') - new_file_path = os.path.join(dir_name, new_filename) + if " " in old_filename: + new_filename = old_filename.replace(" ", "_") + new_file_path = os.path.join(dir_name, new_filename) shutil.copy(file_path, new_file_path) return new_file_path - - -def create_omex(sedml_filepath, sbml_filepath, omex_filepath=None, silent_overwrite=True, add_missing_xmlns=True): - ''' + +def create_omex( + sedml_filepath, + sbml_filepath, + omex_filepath=None, + silent_overwrite=True, + add_missing_xmlns=True, +): + """ wrap a sedml and an sbml file in a combine archive omex file overwrite any existing omex file - ''' + """ - #provide an omex filepath if not specified + # provide an omex filepath if not specified if not omex_filepath: - if sedml_filepath.endswith('.sedml'): - omex_filepath = Path(sedml_filepath[:-6] + '.omex') - elif sedml_filepath.endswith('.xml'): - omex_filepath = Path(sedml_filepath[:-4] + '.omex') + if sedml_filepath.endswith(".sedml"): + omex_filepath = Path(sedml_filepath[:-6] + ".omex") + elif sedml_filepath.endswith(".xml"): + omex_filepath = Path(sedml_filepath[:-4] + ".omex") else: - omex_filepath = Path(sedml_filepath+'.omex') + omex_filepath = Path(sedml_filepath + ".omex") - #suppress pymetadata "file exists" warning by preemptively removing existing omex file + # suppress pymetadata "file exists" warning by preemptively removing existing omex file if os.path.exists(omex_filepath) and silent_overwrite: os.remove(omex_filepath) @@ -393,7 +410,7 @@ def create_omex(sedml_filepath, sbml_filepath, omex_filepath=None, silent_overwr if add_missing_xmlns: xmlns_sbml_missing = xmlns_sbml_attribute_missing(sedml_filepath) - xmlns_fbc_missing = xmlns_fbc_attribute_missing(sbml_filepath,sedml_filepath) + xmlns_fbc_missing = xmlns_fbc_attribute_missing(sbml_filepath, sedml_filepath) if xmlns_sbml_missing: add_xmlns_sbml_attribute(sedml_filepath, sbml_filepath, tmp_sedml_filepath) if xmlns_fbc_missing: @@ -401,26 +418,26 @@ def create_omex(sedml_filepath, sbml_filepath, omex_filepath=None, silent_overwr if xmlns_sbml_missing or xmlns_fbc_missing: sedml_filepath = tmp_sedml_filepath - sbml_file_entry_format = get_entry_format(sbml_filepath, 'SBML') - sedml_file_entry_format = get_entry_format(sedml_filepath, 'SEDML') + sbml_file_entry_format = get_entry_format(sbml_filepath, "SBML") + sedml_file_entry_format = get_entry_format(sedml_filepath, "SEDML") - #wrap sedml+sbml files into an omex combine archive + # wrap sedml+sbml files into an omex combine archive om = omex.Omex() om.add_entry( - entry = omex.ManifestEntry( - location = sedml_filepath, - format = getattr(omex.EntryFormat, sedml_file_entry_format), - master = True, + entry=omex.ManifestEntry( + location=sedml_filepath, + format=getattr(omex.EntryFormat, sedml_file_entry_format), + master=True, ), - entry_path = Path(os.path.basename(sedml_filepath)) + entry_path=Path(os.path.basename(sedml_filepath)), ) om.add_entry( - entry = omex.ManifestEntry( - location = sbml_filepath, - format = getattr(omex.EntryFormat, sbml_file_entry_format), - master = False, + entry=omex.ManifestEntry( + location=sbml_filepath, + format=getattr(omex.EntryFormat, sbml_file_entry_format), + master=False, ), - entry_path = Path(os.path.basename(sbml_filepath)) + entry_path=Path(os.path.basename(sbml_filepath)), ) om.to_omex(Path(omex_filepath)) @@ -429,31 +446,37 @@ def create_omex(sedml_filepath, sbml_filepath, omex_filepath=None, silent_overwr return omex_filepath + def read_log_yml(log_filepath): - ''' + """ read the log YAML file if it exists return the exception message as a string - ''' + """ if not os.path.isfile(log_filepath): return None with open(log_filepath) as f: ym = yaml.safe_load(f) - return ym['exception']['message'] + return ym["exception"]["message"] + def find_files(directory, extension): files = glob.glob(f"{directory}/**/*{extension}", recursive=True) return files -def move_d1_files(file_paths, plot_dir='d1_plots'): + +def move_d1_files(file_paths, plot_dir="d1_plots"): for fpath in file_paths: # find engine.keys() in the file path and asign to engine - engine = next((e for e in ENGINES.keys() if e in fpath), 'unknown') - new_file_path = os.path.join(plot_dir, f'{engine}_{os.path.basename(fpath)}') - if not os.path.exists(plot_dir): os.makedirs(plot_dir, exist_ok=True) - if os.path.exists(new_file_path): os.remove(new_file_path) - print(f'Moving {fpath} to {new_file_path}') + engine = next((e for e in ENGINES.keys() if e in fpath), "unknown") + new_file_path = os.path.join(plot_dir, f"{engine}_{os.path.basename(fpath)}") + if not os.path.exists(plot_dir): + os.makedirs(plot_dir, exist_ok=True) + if os.path.exists(new_file_path): + os.remove(new_file_path) + print(f"Moving {fpath} to {new_file_path}") shutil.move(fpath, new_file_path) + def find_file_in_dir(file_name, directory): """ Searches for a specific file in a given directory and its subdirectories. @@ -474,17 +497,21 @@ def find_file_in_dir(file_name, directory): list_of_files.append(file_path) return list_of_files -def d1_plots_dict(d1_plots_path='d1_plots'): + +def d1_plots_dict(d1_plots_path="d1_plots"): """ Create a dictionary with engine names as keys and d1 plot paths as values. """ - d1_plots = find_files(d1_plots_path, '.pdf') + d1_plots = find_files(d1_plots_path, ".pdf") # to fix broken links in output table after changing the file structure, remove the first two parts of the path d1_plots = [os.path.join(*Path(d1_plot).parts[1:]) for d1_plot in d1_plots] - d1_plots_dict = {e: d1_plot for e in ENGINES.keys() for d1_plot in d1_plots if e in d1_plot} - + d1_plots_dict = { + e: d1_plot for e in ENGINES.keys() for d1_plot in d1_plots if e in d1_plot + } + return d1_plots_dict + def create_hyperlink(path, title=None): """ Create a hyperlink to a file or folder. If the path is None, return None. @@ -496,99 +523,139 @@ def create_hyperlink(path, title=None): return f'{title}' else: return None - + def ansi_to_html(text): - if text != None: - text_message = re.findall(r'"([^"]*)"', text) + if text is not None: + text_message = re.findall(r'"([^"]*)"', text) if len(text_message) > 0: text = text_message text = bytes(text[0], "utf-8").decode("unicode_escape") - text = text.replace('|', '') + text = text.replace("|", "") # # for any text with "<*>" remove "<" as well as ">" but leave wildcard text * - text = re.sub(r'<([^>]*)>', r'\1', text) + text = re.sub(r"<([^>]*)>", r"\1", text) # replace color codes with html color codes - text = text.replace("\x1b[33m","") - text = text.replace("\x1b[31m","") + text = text.replace("\x1b[33m", "") + text = text.replace("\x1b[31m", "") # # remove .\x1b[0m text = text.replace("\x1b[0m", "") # find first "." or ":" after ""after it pattern = r'([^.:]*)([.:])' - replacement = r'\1\2' + replacement = r"\1\2" text = re.sub(pattern, replacement, text, count=1) # bullet points and new lines - text = text.replace('\r\n - ', '
  • ') - text = text.replace('\r\n', '
    ') - text = text.replace('\n', '
    ') + text = text.replace("\r\n - ", "
  • ") + text = text.replace("\r\n", "
    ") + text = text.replace("\n", "
    ") # BioSimulatorsWarning: two
    tags after - text = text.replace('BioSimulatorsWarning:', '

    BioSimulatorsWarning:

    ') - text = text.replace('warnings.warn(termcolor.colored(message, Colors.warning.value), category)', '
    ') + text = text.replace( + "BioSimulatorsWarning:", "

    BioSimulatorsWarning:

    " + ) + text = text.replace( + "warnings.warn(termcolor.colored(message, Colors.warning.value), category)", + "
    ", + ) return text + def check_file_compatibility_test(engine, model_filepath, experiment_filepath): - ''' + """ Check if the file extensions suggest the file types are compatible with the engine. Only .sedml and .sbml files, and .xml files with 'sedml' and/or 'sbml' in their filename are considered at this moment. It can be extended to other cases if needed in the future. - ''' + """ file_extensions = get_filetypes(model_filepath, experiment_filepath) - engine_filetypes_tuple_list = ENGINES[engine]['formats'] - engine_name = ENGINES[engine]['name'] - flat_engine_filetypes_tuple_list = [item for sublist in engine_filetypes_tuple_list for item in sublist if sublist != 'unclear'] - compatible_filetypes = [TYPES[i] for i in flat_engine_filetypes_tuple_list if i in list(TYPES.keys())] + engine_filetypes_tuple_list = ENGINES[engine]["formats"] + engine_name = ENGINES[engine]["name"] + flat_engine_filetypes_tuple_list = [ + item + for sublist in engine_filetypes_tuple_list + for item in sublist + if sublist != "unclear" + ] + compatible_filetypes = [ + TYPES[i] for i in flat_engine_filetypes_tuple_list if i in list(TYPES.keys()) + ] unique_compatible_filetpyes = list(set(compatible_filetypes)) - unique_compatible_filetpyes_strings = ', '.join(unique_compatible_filetpyes[:-1]) + ' and ' + unique_compatible_filetpyes[-1] if len(unique_compatible_filetpyes) > 1 else unique_compatible_filetpyes[0] - + unique_compatible_filetpyes_strings = ( + ", ".join(unique_compatible_filetpyes[:-1]) + + " and " + + unique_compatible_filetpyes[-1] + if len(unique_compatible_filetpyes) > 1 + else unique_compatible_filetpyes[0] + ) + file_types = [TYPES[i] for i in file_extensions] - filetypes_strings = ', '.join(file_types[:-1]) + ' and ' + file_types[-1] if len(file_types) > 1 else file_types[0] + filetypes_strings = ( + ", ".join(file_types[:-1]) + " and " + file_types[-1] + if len(file_types) > 1 + else file_types[0] + ) - if file_extensions == ('sbml', 'sedml') and file_extensions not in engine_filetypes_tuple_list: - return 'FAIL', (f"The file extensions {file_extensions} suggest the input file types are {filetypes_strings} which is not compatible with {engine_name}.

    {unique_compatible_filetpyes_strings} are compatible with {engine_name}.") + if ( + file_extensions == ("sbml", "sedml") + and file_extensions not in engine_filetypes_tuple_list + ): + return "FAIL", ( + f"The file extensions {file_extensions} suggest the input file types are {filetypes_strings} which is not compatible with {engine_name}.

    {unique_compatible_filetpyes_strings} are compatible with {engine_name}." + ) if file_extensions in engine_filetypes_tuple_list: - return 'pass', (f"The file extensions {file_extensions} suggest the input file types are {filetypes_strings}.

    {unique_compatible_filetpyes_strings} are compatible with {engine_name}.") - - - if 'xml' in file_extensions: - model_sbml = 'sbml' in model_filepath - model_sedml = 'sedml' in model_filepath - experiment_sbml = 'sbml' in experiment_filepath - experiment_sedml = 'sedml' in experiment_filepath + return "pass", ( + f"The file extensions {file_extensions} suggest the input file types are {filetypes_strings}.

    {unique_compatible_filetpyes_strings} are compatible with {engine_name}." + ) - if model_sbml and experiment_sbml and experiment_sedml and not model_sedml: + if "xml" in file_extensions: + model_sbml = "sbml" in model_filepath + model_sedml = "sedml" in model_filepath + experiment_sbml = "sbml" in experiment_filepath + experiment_sedml = "sedml" in experiment_filepath - file_types_tuple = ('sbml', 'sedml') + if model_sbml and experiment_sbml and experiment_sedml and not model_sedml: + file_types_tuple = ("sbml", "sedml") file_types = [TYPES[i] for i in file_types_tuple] - filetypes_strings = ', '.join(file_types[:-1]) + ' and ' + file_types[-1] if len(file_types) > 1 else file_types[0] + filetypes_strings = ( + ", ".join(file_types[:-1]) + " and " + file_types[-1] + if len(file_types) > 1 + else file_types[0] + ) if file_types_tuple in engine_filetypes_tuple_list: - return 'pass', (f"The filenames '{model_filepath}' and '{experiment_filepath}' suggest the input files are {filetypes_strings} which is compatible with {engine_name}.

    {unique_compatible_filetpyes_strings} are compatible with {engine_name}.") + return "pass", ( + f"The filenames '{model_filepath}' and '{experiment_filepath}' suggest the input files are {filetypes_strings} which is compatible with {engine_name}.

    {unique_compatible_filetpyes_strings} are compatible with {engine_name}." + ) else: - return 'FAIL', (f"The filenames '{model_filepath}' and '{experiment_filepath}' suggest the input files are {filetypes_strings} which is not compatible with {engine_name}.

    {unique_compatible_filetpyes_strings} are compatible with {engine_name}.") + return "FAIL", ( + f"The filenames '{model_filepath}' and '{experiment_filepath}' suggest the input files are {filetypes_strings} which is not compatible with {engine_name}.

    {unique_compatible_filetpyes_strings} are compatible with {engine_name}." + ) else: - return 'unsure', (f"The file extensions {file_extensions} suggest the input file types may not be compatibe with {engine_name}.

    {unique_compatible_filetpyes_strings} are compatible with {engine_name}.") + return "unsure", ( + f"The file extensions {file_extensions} suggest the input file types may not be compatibe with {engine_name}.

    {unique_compatible_filetpyes_strings} are compatible with {engine_name}." + ) else: - return 'unsure', (f"The file extensions {file_extensions} suggest the input file types may not be compatibe with {engine_name}.

    {unique_compatible_filetpyes_strings} are compatible with {engine_name}.") + return "unsure", ( + f"The file extensions {file_extensions} suggest the input file types may not be compatibe with {engine_name}.

    {unique_compatible_filetpyes_strings} are compatible with {engine_name}." + ) - -def collapsible_content(content, title='Details'): +def collapsible_content(content, title="Details"): """ Create a collapsible content section in markdown format - + Input: content, title """ if content: - return f'
    {title}{content}
    ' + return f"
    {title}{content}
    " else: - return f'{title}' + return f"{title}" + def get_filetypes(model_filepath, simulation_filepath): """ @@ -597,15 +664,16 @@ def get_filetypes(model_filepath, simulation_filepath): Input: model_filepath, simulation_filepath Output: tuple of filetypes """ - model_ext = os.path.splitext(model_filepath)[-1].lstrip('.') - simulation_ext = os.path.splitext(simulation_filepath)[-1].lstrip('.') - + model_ext = os.path.splitext(model_filepath)[-1].lstrip(".") + simulation_ext = os.path.splitext(simulation_filepath)[-1].lstrip(".") + return (model_ext, simulation_ext) + def delete_output_folder(output_dir): - ''' + """ # Delete the output folder and its contents - ''' + """ for file_name in os.listdir(output_dir): file_path = os.path.join(output_dir, file_name) if os.path.isfile(file_path): @@ -613,44 +681,53 @@ def delete_output_folder(output_dir): elif os.path.isdir(file_path): shutil.rmtree(file_path) -def run_biosimulators_remote(engine,sedml_filepath,sbml_filepath): - ''' + +def run_biosimulators_remote(engine, sedml_filepath, sbml_filepath): + """ put the sedml and sbml file into an omex archive run it remotely using biosimulators - ''' + """ - #put the sedml and sbml into a combine archive - omex_filepath = create_omex(sedml_filepath,sbml_filepath) + # put the sedml and sbml into a combine archive + omex_filepath = create_omex(sedml_filepath, sbml_filepath) omex_file_name = os.path.basename(omex_filepath) # get the version of the engine engine_version = biosimulations.get_simulator_versions(engine) sim_dict = { - "name": "test", - "simulator": engine, - "simulatorVersion": engine_version[engine][-1], # get the latest version - "cpus": 1, - "memory": 8, - "maxTime": 20, - "envVars": [], - "purpose": "academic", - "email": "", - } + "name": "test", + "simulator": engine, + "simulatorVersion": engine_version[engine][-1], # get the latest version + "cpus": 1, + "memory": 8, + "maxTime": 20, + "envVars": [], + "purpose": "academic", + "email": "", + } try: - results_urls = biosimulations.submit_simulation_archive(\ - archive_file=omex_file_name,\ - sim_dict=sim_dict) - results_urls['response'] = results_urls['response'].status_code + results_urls = biosimulations.submit_simulation_archive( + archive_file=omex_file_name, sim_dict=sim_dict + ) + results_urls["response"] = results_urls["response"].status_code except Exception as exception_message: - print(f"There was an error submitting the simulation archive:{exception_message}") - results_urls = {"response":"","view": "", "download": "", "logs": "","exception": exception_message} - - return results_urls + print( + f"There was an error submitting the simulation archive:{exception_message}" + ) + results_urls = { + "response": "", + "view": "", + "download": "", + "logs": "", + "exception": exception_message, + } + + return results_urls -def get_remote_results(engine, download_link, output_dir='remote_results'): +def get_remote_results(engine, download_link, output_dir="remote_results"): filepath_results = download_file_from_link(engine, download_link) extract_dir = os.path.join(os.getcwd(), output_dir, engine) shutil.unpack_archive(filepath_results, extract_dir=extract_dir) @@ -658,42 +735,44 @@ def get_remote_results(engine, download_link, output_dir='remote_results'): return extract_dir + def rename_files_in_extract_dir(extract_dir, engine): - - log_yml_path = find_file_in_dir('log.yml', extract_dir)[0] - new_file_name = f'{engine}_log.yml' + log_yml_path = find_file_in_dir("log.yml", extract_dir)[0] + new_file_name = f"{engine}_log.yml" root = os.path.dirname(log_yml_path) new_file_path = os.path.join(root, new_file_name) if os.path.exists(new_file_path): os.remove(new_file_path) os.rename(log_yml_path, new_file_path) - + return extract_dir -def run_biosimulators_docker(engine,sedml_filepath,sbml_filepath,output_dir='output',chown_outputs=True): - ''' +def run_biosimulators_docker( + engine, sedml_filepath, sbml_filepath, output_dir="output", chown_outputs=True +): + """ put the sedml and sbml file into an omex archive run it locally using a biosimulators docker categorise an error message in the log file - ''' + """ - #put the sedml and sbml into a combine archive - omex_filepath = create_omex(sedml_filepath,sbml_filepath) - log_yml_path = os.path.join(output_dir,"log.yml") + # put the sedml and sbml into a combine archive + omex_filepath = create_omex(sedml_filepath, sbml_filepath) + log_yml_path = os.path.join(output_dir, "log.yml") log_yml_dict = {} exception_message = "" try: - biosimulators_core(engine,omex_filepath,output_dir=output_dir) + biosimulators_core(engine, omex_filepath, output_dir=output_dir) except Exception as e: exception_message = str(e) - #ensure outputs are owned by the user - if 'getuid' in dir(os) and chown_outputs: + # ensure outputs are owned by the user + if "getuid" in dir(os) and chown_outputs: uid = os.getuid() gid = os.getgid() - os.system(f'sudo chown -R {uid}:{gid} {output_dir}') + os.system(f"sudo chown -R {uid}:{gid} {output_dir}") if os.path.exists(log_yml_path): with open(log_yml_path) as f: @@ -701,17 +780,22 @@ def run_biosimulators_docker(engine,sedml_filepath,sbml_filepath,output_dir='out # to deal with vcell like cases where there is a log_yml with status SUCCEEDED but a detailedErrorLog.txt with "RuntimeError" detailed_error_log_dict = {} - if os.path.exists(os.path.join(output_dir, 'detailedErrorLog.txt')): - with open(os.path.join(output_dir, 'detailedErrorLog.txt')) as f: + if os.path.exists(os.path.join(output_dir, "detailedErrorLog.txt")): + with open(os.path.join(output_dir, "detailedErrorLog.txt")) as f: detailed_error_log = f.read() - if 'RuntimeException' in detailed_error_log: - detailed_error_log_dict['status'] = 'FAIL' - detailed_error_log_dict['error_message'] = "Runtime Exception" + if "RuntimeException" in detailed_error_log: + detailed_error_log_dict["status"] = "FAIL" + detailed_error_log_dict["error_message"] = "Runtime Exception" + + return { + "exception_message": exception_message, + "log_yml": log_yml_dict, + "detailed_error_log": detailed_error_log_dict, + } - return {"exception_message":exception_message,"log_yml":log_yml_dict, "detailed_error_log":detailed_error_log_dict} -def biosimulators_core(engine,omex_filepath,output_dir=None): - ''' +def biosimulators_core(engine, omex_filepath, output_dir=None): + """ run the omex file using biosimulators calls biosimulators via docker locally assumes local docker is setup @@ -720,81 +804,85 @@ def biosimulators_core(engine,omex_filepath,output_dir=None): omex_filepath: the OMEX file to run output_dir: folder to write the simulation outputs to - ''' + """ omex_filepath_no_spaces = remove_spaces_from_filename(omex_filepath) - #directory containing omex file needs mapping into the container as the input folders + # directory containing omex file needs mapping into the container as the input folders omex_dir = os.path.dirname(os.path.abspath(omex_filepath_no_spaces)) omex_file = os.path.basename(os.path.abspath(omex_filepath_no_spaces)) - mount_in = docker.types.Mount("/root/in",omex_dir,type="bind",read_only=True) + mount_in = docker.types.Mount("/root/in", omex_dir, type="bind", read_only=True) - #we want the output folder to be different to the input folder - #to avoid the "file already exists" type error + # we want the output folder to be different to the input folder + # to avoid the "file already exists" type error if not output_dir: - output_dir = os.path.join(omex_dir,'output') + output_dir = os.path.join(omex_dir, "output") - os.makedirs(output_dir,exist_ok=True) + os.makedirs(output_dir, exist_ok=True) - mount_out = docker.types.Mount("/root/out",output_dir,type="bind") + mount_out = docker.types.Mount("/root/out", output_dir, type="bind") client = docker.from_env() - client.containers.run(f"ghcr.io/biosimulators/{engine}", - mounts=[mount_in,mount_out], - command=f"-i '/root/in/{omex_file}' -o /root/out", - auto_remove=True) + client.containers.run( + f"ghcr.io/biosimulators/{engine}", + mounts=[mount_in, mount_out], + command=f"-i '/root/in/{omex_file}' -o /root/out", + auto_remove=True, + ) -def test_engine(engine,filename,error_categories=error_categories): - ''' + +def test_engine(engine, filename, error_categories=error_categories): + """ test running the file with the given engine return category tagged error message, or "pass" if no error was raised - ''' + """ unknown_engine = False try: if engine == "tellurium": - tellurium.run_from_sedml_file([filename],["-outputdir","none"]) - return "pass" #no errors - #elif engine == "some_other_engine": + tellurium.run_from_sedml_file([filename], ["-outputdir", "none"]) + return "pass" # no errors + # elif engine == "some_other_engine": # #run it here # return "pass" else: unknown_engine = True except Exception as e: - #return error object + # return error object error_str = safe_md_string(e) if unknown_engine: raise RuntimeError(f"unknown engine {engine}") for tag in error_categories[engine]: - if re.search(error_categories[engine][tag],error_str): - return [tag,f"```{error_str}```"] - - return ["other",f"```{error_str}```"] + if re.search(error_categories[engine][tag], error_str): + return [tag, f"```{error_str}```"] + + return ["other", f"```{error_str}```"] + @dataclass class SuppressOutput: - ''' + """ redirect stdout and/or stderr to os.devnull stdout: whether to suppress stdout stderr: whether to suppress stderr - ''' + """ stdout: bool = False stderr: bool = False def suppress(self): - 'begin to suppress output(s)' + "begin to suppress output(s)" if self.stdout: self.orig_stdout = sys.stdout - sys.stdout = open(os.devnull,"w") + sys.stdout = open(os.devnull, "w") if self.stderr: self.orig_stderr = sys.stderr - sys.stderr = open(os.devnull,"w") + sys.stderr = open(os.devnull, "w") def restore(self): - 'restore output(s)' + "restore output(s)" if self.stdout: sys.stdout.close() sys.stdout = self.orig_stdout @@ -804,13 +892,13 @@ def restore(self): class RequestCache: - ''' + """ caching is used to prevent the need to download the same responses from the remote server multiple times during testing currently no handling of unexpected cache misses - ''' + """ - def __init__(self,mode="off",direc="cache"): - ''' + def __init__(self, mode="off", direc="cache"): + """ mode: "off" to disable caching (does not wipe any existing cache data) "store" to wipe and store fresh results in the cache @@ -818,226 +906,236 @@ def __init__(self,mode="off",direc="cache"): "auto" to download only if missing could also implement "auto" mode that only downloads on a cache miss direc: the directory used to store the cache - ''' + """ self.mode = mode - #store absolute cache dir path to ensure it is found regardless of current directory - self.absolute_dir = os.path.join(os.getcwd(),direc) - - if mode == "store": self.wipe() + # store absolute cache dir path to ensure it is found regardless of current directory + self.absolute_dir = os.path.join(os.getcwd(), direc) + if mode == "store": + self.wipe() def wipe(self): - 'wipe any existing cache directory and setup a new empty one' + "wipe any existing cache directory and setup a new empty one" - shutil.rmtree(self.absolute_dir,ignore_errors=True) - os.makedirs(self.absolute_dir,exist_ok=True) + shutil.rmtree(self.absolute_dir, ignore_errors=True) + os.makedirs(self.absolute_dir, exist_ok=True) - - def get_path(self,request=None): - ''' + def get_path(self, request=None): + """ return path to cached request response or just the cache base directory for a null request - ''' - - return os.path.join(f"{self.absolute_dir}",hashlib.sha256(request.encode('UTF-8')).hexdigest()) - #return f"{self.absolute_dir}/{hashlib.sha256(request.encode('UTF-8')).hexdigest()}" + """ + return os.path.join( + f"{self.absolute_dir}", hashlib.sha256(request.encode("UTF-8")).hexdigest() + ) + # return f"{self.absolute_dir}/{hashlib.sha256(request.encode('UTF-8')).hexdigest()}" - def get_entry(self,request): - ''' + def get_entry(self, request): + """ load cached response note this should only be used in a context where you trust the integrity of the cache files due to using pickle note also: no explicit handling of cache misses yet implemented - ''' + """ - with open(self.get_path(request),"rb") as f: + with open(self.get_path(request), "rb") as f: return pickle.load(f) - - def set_entry(self,request,response): - ''' + def set_entry(self, request, response): + """ save a response to the cache - ''' + """ - with open(self.get_path(request),"wb") as fout: - pickle.dump(response,fout) + with open(self.get_path(request), "wb") as fout: + pickle.dump(response, fout) - def do_request(self,request): - ''' + def do_request(self, request): + """ automatically handle the cache operations for the call_back function - ''' + """ - if self.mode == "reuse" or (self.mode == "auto" and os.path.isfile(self.get_path(request))): + if self.mode == "reuse" or ( + self.mode == "auto" and os.path.isfile(self.get_path(request)) + ): return self.get_entry(request) response = requests.get(request) response.raise_for_status() - if self.mode == "store" or self.mode == "auto": self.set_entry(request,response) + if self.mode == "store" or self.mode == "auto": + self.set_entry(request, response) return response + class MarkdownTable: - ''' + """ helper class to accumulate rows of data with a header and optional summary row to be written to file as a markdown table - ''' - def __init__(self,labels:str,keys:str,splitter='|',PASS="pass",FAIL="FAIL",NA="NA"): - 'specify column headers and variable names' + """ + + def __init__( + self, labels: str, keys: str, splitter="|", PASS="pass", FAIL="FAIL", NA="NA" + ): + "specify column headers and variable names" self.labels = [x.strip() for x in labels.split(splitter)] self.keys = [x.strip() for x in keys.split(splitter)] assert len(self.keys) == len(self.labels) - self.data = {key:[] for key in self.keys} + self.data = {key: [] for key in self.keys} self.summary = None self.PASS = PASS self.FAIL = FAIL self.NA = NA - def __getitem__(self,key): - 'get last row of named column' + def __getitem__(self, key): + "get last row of named column" assert key in self.keys assert len(self.data[key]) > 0 return self.data[key][-1] - def __setitem__(self,key,value): - 'set (ie overwrite) last row of named column' + def __setitem__(self, key, value): + "set (ie overwrite) last row of named column" assert key in self.keys assert len(self.data[key]) > 0 self.data[key][-1] = value - def new_row(self,vars={}): - 'ingest the next row from a variables dict (eg locals())' + def new_row(self, vars={}): + "ingest the next row from a variables dict (eg locals())" for key in self.keys: - if not key in vars: + if key not in vars: self.data[key].append(self.NA) else: self.data[key].append(vars[key]) - def update_row(self,vars): - 'update the last row from a variables dict (eg locals())' + def update_row(self, vars): + "update the last row from a variables dict (eg locals())" for key in self.keys: - if not key in vars: + if key not in vars: self.data[key][-1] = self.NA else: self.data[key][-1] = vars[key] def n_rows(self): - 'return number of data rows' + "return number of data rows" return len(self.data[self.keys[0]]) def n_cols(self): - 'return number of data columns' + "return number of data columns" return len(self.data) - def add_summary(self,key,value): - 'fill in the optional summary cell for the named column' + def add_summary(self, key, value): + "fill in the optional summary cell for the named column" if not self.summary: - self.summary = {key:"" for key in self.keys} + self.summary = {key: "" for key in self.keys} self.summary[key] = value - def add_count(self,key,func,format='n={count}'): - 'add a basic summary counting how many times the function is true' - count = len([ x for x in self.data[key] if func(x) ]) + def add_count(self, key, func, format="n={count}"): + "add a basic summary counting how many times the function is true" + count = len([x for x in self.data[key] if func(x)]) - self.add_summary(key,format.format(count=count)) + self.add_summary(key, format.format(count=count)) - def regex_summary(self,key,patterns,format='{summary}',func=None): - ''' + def regex_summary(self, key, patterns, format="{summary}", func=None): + """ count how many cells match each pattern transform cell contents with optional callback function - ''' + """ counts = defaultdict(int) - for i,cell in enumerate(self.data[key]): - if type(cell) == list: + for i, cell in enumerate(self.data[key]): + if type(cell) is list: value = str(cell[0]) else: value = str(cell) - match=None - for regex,tag in patterns.items(): - if re.search(regex,value): + match = None + for regex, tag in patterns.items(): + if re.search(regex, value): match = tag break - if not match: match = "other" + if not match: + match = "other" counts[match] += 1 - if func: self.data[key][i] = func(key,self.data[key][i],match) + if func: + self.data[key][i] = func(key, self.data[key][i], match) - summary = ' '.join([f'n_{tag}={counts[tag]}' for tag in counts]) - self.add_summary(key,format.format(summary=summary)) + summary = " ".join([f"n_{tag}={counts[tag]}" for tag in counts]) + self.add_summary(key, format.format(summary=summary)) - def make_fold(self,summary,details,quote=False): - 'make foldable/hideable html cell' + def make_fold(self, summary, details, quote=False): + "make foldable/hideable html cell" if quote: format = "
    {summary}```{details}```
    " else: format = "
    {summary}{details}
    " - return format.format(summary=summary,details=details) + return format.format(summary=summary, details=details) - def generate_summary(self,counts): - 'generate the summary cell contents' + def generate_summary(self, counts): + "generate the summary cell contents" total = sum([counts[tag] for tag in counts]) summary = [] fails = total if self.PASS in counts: - summary.append(f'pass={counts[self.PASS]}') + summary.append(f"pass={counts[self.PASS]}") fails -= counts[self.PASS] del counts[self.PASS] if self.NA in counts: - summary.append(f'NA={counts[self.NA]}') + summary.append(f"NA={counts[self.NA]}") fails -= counts[self.NA] del counts[self.NA] if len(counts) > 1: # more than one error category, make folded details - summary.append(f'FAIL={fails}') #summary has total fails - summary = ' '.join(summary) - details = ' '.join([f'n_{tag}={counts[tag]}' for tag in counts]) #give failures breakdown + summary.append(f"FAIL={fails}") # summary has total fails + summary = " ".join(summary) + details = " ".join( + [f"n_{tag}={counts[tag]}" for tag in counts] + ) # give failures breakdown - final = self.make_fold(summary,details) + final = self.make_fold(summary, details) else: # only one error category at most, use only a summary if len(counts) == 1: tag = list(counts)[0] - summary.append(f'{tag}={counts[tag]}') + summary.append(f"{tag}={counts[tag]}") + + final = summary = " ".join(summary) - final = summary = ' '.join(summary) - return final - def simple_summary(self,key): - 'count how many cells contain each distinct value' - counts = defaultdict(int) + def simple_summary(self, key): + "count how many cells contain each distinct value" + counts = defaultdict(int) for cell in self.data[key]: - if type(cell) == list: + if type(cell) is list: tag = str(cell[0]) else: tag = str(cell) counts[tag] += 1 - self.add_summary(key,self.generate_summary(counts)) + self.add_summary(key, self.generate_summary(counts)) - def format_cell(self,cell): - ''' + def format_cell(self, cell): + """ produce the final fully formatted markdown table cell contents - ''' + """ - if type(cell) == list: + if type(cell) is list: assert len(cell) == 2 details = safe_md_string(cell[1]) - return self.make_fold(cell[0],details) - + return self.make_fold(cell[0], details) + return str(cell) - def transform_column(self,key,func=None): - 'pass all column values through a function' + def transform_column(self, key, func=None): + "pass all column values through a function" for i in range(len(self.data[key])): if func: self.data[key][i] = func(self.data[key][i]) @@ -1046,74 +1144,96 @@ def transform_column(self,key,func=None): def print_last_row(self): if self.n_rows() == 0: - print('-') + print("-") return - print(' '.join([str(self.data[key][-1]) for key in self.data])) + print(" ".join([str(self.data[key][-1]) for key in self.data])) def print_col_lengths(self): - print(' '.join([str(len(self.data[key])) for key in self.data])) + print(" ".join([str(len(self.data[key])) for key in self.data])) - def write(self,fout,sep='|',end='\n'): - 'write the markdown table to file' + def write(self, fout, sep="|", end="\n"): + "write the markdown table to file" fout.write(sep + sep.join(self.labels) + sep + end) - fout.write(sep + sep.join(['---' for x in self.labels]) + sep + end) + fout.write(sep + sep.join(["---" for x in self.labels]) + sep + end) if self.summary: - fout.write(sep + sep.join([ str(self.summary[key]) for key in self.keys ]) + sep + end) + fout.write( + sep + + sep.join([str(self.summary[key]) for key in self.keys]) + + sep + + end + ) for i in range(self.n_rows()): - fout.write(sep + sep.join([ str(self.data[key][i]) for key in self.keys ]) + sep + end) - - def process_engine_outcomes(self,engine,key): - ''' + fout.write( + sep + + sep.join([str(self.data[key][i]) for key in self.keys]) + + sep + + end + ) + + def process_engine_outcomes(self, engine, key): + """ process a column containing engine test outcomes/error messages categorise errors and generate summary counts - ''' + """ - #dict to record frequency of each engine error type - errors = {'other':0} - for pattern,error_tag in error_categories[engine].items(): + # dict to record frequency of each engine error type + errors = {"other": 0} + for pattern, error_tag in error_categories[engine].items(): errors[error_tag] = 0 for i in range(len(self.data[key])): if not self.data[key][i]: - self.data[key][i] = 'pass' + self.data[key][i] = "pass" continue - #make sure the error message will not break the markdown table + # make sure the error message will not break the markdown table error_str = safe_md_string(self.data[key][i]) - #category match the error message + # category match the error message cell_text = None for pattern in error_categories[engine]: - if re.search(pattern,error_str): + if re.search(pattern, error_str): error_tag = error_categories[engine][pattern] errors[error_tag] += 1 - cell_text = self.make_fold(f"FAIL ({error_tag})",error_str,quote=True) + cell_text = self.make_fold( + f"FAIL ({error_tag})", error_str, quote=True + ) break - + if not cell_text: errors["other"] += 1 - cell_text = self.make_fold(f"FAIL (other)",error_str,quote=True) - + cell_text = self.make_fold("FAIL (other)", error_str, quote=True) + self.data[key][i] = cell_text - #generate summary counts by error category - total_errors = sum([ count for _,count in errors.items() ]) - details = ' '.join([ f'{error_tag}={count}' for error_tag,count in errors.items() ]) - summary_text = self.make_fold(f"fails={total_errors}",details) - self.add_summary(key,summary_text) + # generate summary counts by error category + total_errors = sum([count for _, count in errors.items()]) + details = " ".join( + [f"{error_tag}={count}" for error_tag, count in errors.items()] + ) + summary_text = self.make_fold(f"fails={total_errors}", details) + self.add_summary(key, summary_text) def safe_md_string(value): - ''' + """ make a string safe to insert into markdown table - ''' + """ - return str(value).replace("\n"," ").replace("\r","").replace("\t"," ").replace(" "," ").replace(" "," ") + return ( + str(value) + .replace("\n", " ") + .replace("\r", "") + .replace("\t", " ") + .replace(" ", " ") + .replace(" ", " ") + ) -import time -def download_file_from_link(engine, download_link, output_file='results.zip', max_wait_time=600, wait_time=2): +def download_file_from_link( + engine, download_link, output_file="results.zip", max_wait_time=600, wait_time=2 +): """ Function to download a file from a given URL. @@ -1136,79 +1256,116 @@ def download_file_from_link(engine, download_link, output_file='results.zip', ma time.sleep(wait_time) if response.status_code == 200: - print(f'Downloading {engine} results...') + print(f"Downloading {engine} results...") with requests.get(download_link, stream=True) as r: - with open(output_file, 'wb') as f: + with open(output_file, "wb") as f: shutil.copyfileobj(r.raw, f) filepath = os.path.abspath(output_file) return filepath else: - print(f'Failed to download {engine} results.') - raise HTTPError(f'Failed to download {engine} results.') + print(f"Failed to download {engine} results.") + raise HTTPError(f"Failed to download {engine} results.") + def create_results_table(results, sbml_filepath, sedml_filepath, output_dir): """ Create a markdown table of the results. - + Input: results, TYPES, sbml_filepath, sedml_filepath, ENGINES, output_dir Output: results_md_table """ - + pass_html = "✅ PASS" fail_html = "❌ FAIL" warning_html = "⚠ WARNING" unsure_html = "❓ UNSURE" xfail_html = "⚠ XFAIL" - links = ['view', 'download', 'logs'] + links = ["view", "download", "logs"] for e in results.keys(): results[e].update(process_log_yml_dict(results[e]["log_yml"])) if "detailed_error_log" in results[e].keys(): if results[e]["detailed_error_log"] != {}: - results[e]['status'] = results[e]["detailed_error_log"]['status'] - results[e]['error_message'] = results[e]["detailed_error_log"]['error_message'] - if any([l in results[e].keys() for l in links]): - results[e]['links'] = '
    '.join([f'{create_hyperlink(results[e][k], title=k)}' for k in results[e].keys() if k in links]) - results[e]['name'] = ENGINES[e]['name'] + results[e]["status"] = results[e]["detailed_error_log"]["status"] + results[e]["error_message"] = results[e]["detailed_error_log"][ + "error_message" + ] + if any([link in results[e].keys() for link in links]): + results[e]["links"] = "
    ".join( + [ + f"{create_hyperlink(results[e][k], title=k)}" + for k in results[e].keys() + if k in links + ] + ) + results[e]["name"] = ENGINES[e]["name"] results_table = pd.DataFrame.from_dict(results).T - results_table.rename(columns={"status": PASS_FAIL, "error_message": ERROR, "exception_type": TYPE}, inplace=True) + results_table.rename( + columns={"status": PASS_FAIL, "error_message": ERROR, "exception_type": TYPE}, + inplace=True, + ) - results_table.index.name = ENGINE + results_table.index.name = ENGINE results_table.reset_index(inplace=True) # Error - results_table[ERROR] = results_table.apply(lambda x: None if x[PASS_FAIL] == x[ERROR] else x[ERROR], axis=1) + results_table[ERROR] = results_table.apply( + lambda x: None if x[PASS_FAIL] == x[ERROR] else x[ERROR], axis=1 + ) results_table[ERROR] = results_table[ERROR].apply(lambda x: ansi_to_html(x)) - results_table[PASS_FAIL] = results_table[PASS_FAIL].apply(lambda x: f'{fail_html}' if x == 'FAIL' \ - else f'{pass_html}' if x == 'pass' - else f'{warning_html}' if x == 'WARNING' - else x) - + results_table[PASS_FAIL] = results_table[PASS_FAIL].apply( + lambda x: f"{fail_html}" + if x == "FAIL" + else f"{pass_html}" + if x == "pass" + else f"{warning_html}" + if x == "WARNING" + else x + ) + # d1 plot clickable link - results_table[D1] = results_table[ENGINE].apply(lambda x: d1_plots_dict(output_dir).get(x, None)) - results_table[D1] = results_table[D1].apply(lambda x: create_hyperlink(x,title='plot')) + results_table[D1] = results_table[ENGINE].apply( + lambda x: d1_plots_dict(output_dir).get(x, None) + ) + results_table[D1] = results_table[D1].apply( + lambda x: create_hyperlink(x, title="plot") + ) for e in ENGINES.keys(): - compatibility_content = check_file_compatibility_test(e, sbml_filepath, sedml_filepath) - if compatibility_content[0] == 'pass': - results_table.loc[results_table[ENGINE] == e, COMPAT] = collapsible_content(compatibility_content[1], title=f'{pass_html}') - elif compatibility_content[0] == 'unsure': - results_table.loc[results_table[ENGINE] == e, COMPAT] = collapsible_content(compatibility_content[1], title=f'{unsure_html}') + compatibility_content = check_file_compatibility_test( + e, sbml_filepath, sedml_filepath + ) + if compatibility_content[0] == "pass": + results_table.loc[results_table[ENGINE] == e, COMPAT] = collapsible_content( + compatibility_content[1], title=f"{pass_html}" + ) + elif compatibility_content[0] == "unsure": + results_table.loc[results_table[ENGINE] == e, COMPAT] = collapsible_content( + compatibility_content[1], title=f"{unsure_html}" + ) else: - results_table.loc[results_table[ENGINE] == e, COMPAT] = collapsible_content(compatibility_content[1], title=f'{fail_html}') + results_table.loc[results_table[ENGINE] == e, COMPAT] = collapsible_content( + compatibility_content[1], title=f"{fail_html}" + ) # add xfail to engines that do not support sbml - sbml_incompatible_ENGINES = [e for e in ENGINES.keys() if 'sbml' not in ENGINES[e]['formats'][0]] + sbml_incompatible_ENGINES = [ + e for e in ENGINES.keys() if "sbml" not in ENGINES[e]["formats"][0] + ] for e in sbml_incompatible_ENGINES: - engine_name = ENGINES[e]['name'] - unique_compatible_filetpyes_strings = ', '.join([TYPES[i] for i in ENGINES[e]['formats'][0] if i in list(TYPES.keys())]) - compatibility = (f"Only {unique_compatible_filetpyes_strings} are compatible with {engine_name}.") - compatibility_content = f'EXPECTED FAIL

    {compatibility}' - results_table.loc[results_table[ENGINE] == e, COMPAT] = collapsible_content(compatibility_content, title=f'{xfail_html}') - results_table.loc[results_table[ENGINE] == e, PASS_FAIL] = f'{xfail_html}' + engine_name = ENGINES[e]["name"] + unique_compatible_filetpyes_strings = ", ".join( + [TYPES[i] for i in ENGINES[e]["formats"][0] if i in list(TYPES.keys())] + ) + compatibility = f"Only {unique_compatible_filetpyes_strings} are compatible with {engine_name}." + compatibility_content = f"EXPECTED FAIL

    {compatibility}" + results_table.loc[results_table[ENGINE] == e, COMPAT] = collapsible_content( + compatibility_content, title=f"{xfail_html}" + ) + results_table.loc[results_table[ENGINE] == e, PASS_FAIL] = f"{xfail_html}" for e in results_table[ENGINE]: links = "" @@ -1216,212 +1373,265 @@ def create_results_table(results, sbml_filepath, sedml_filepath, output_dir): error_type = "" expected_fail = "" - if results_table.loc[results_table[ENGINE] == e, PASS_FAIL].values[0] == f'{xfail_html}': - expected_fail = f'EXPECTED FAIL

    ' + if ( + results_table.loc[results_table[ENGINE] == e, PASS_FAIL].values[0] + == f"{xfail_html}" + ): + expected_fail = "EXPECTED FAIL

    " if len(results_table.loc[results_table[ENGINE] == e, ERROR].values[0]) > 1: - error_message = f'ERROR MESSAGE:
    {results_table.loc[results_table[ENGINE] == e, ERROR].values[0]}

    ' + error_message = f"ERROR MESSAGE:
    {results_table.loc[results_table[ENGINE] == e, ERROR].values[0]}

    " if "links" in results_table.columns: links = results_table.loc[results_table[ENGINE] == e, "links"].values[0] - links = f'{links}

    ' + links = f"{links}

    " if TYPE in results_table.columns: - if len(results_table.loc[results_table[ENGINE] == e, TYPE].values[0])>1: - error_type = f'ERROR TYPE:
    {results_table.loc[results_table[ENGINE] == e, TYPE].values[0]}' + if len(results_table.loc[results_table[ENGINE] == e, TYPE].values[0]) > 1: + error_type = f"ERROR TYPE:
    {results_table.loc[results_table[ENGINE] == e, TYPE].values[0]}" - links_error = f'{expected_fail}{links}{error_message}{error_type}' + links_error = f"{expected_fail}{links}{error_message}{error_type}" results_table.loc[results_table[ENGINE] == e, "links_error"] = links_error # add links as collapsible content to pass / fail column for e in results_table[ENGINE]: title = results_table.loc[results_table[ENGINE] == e, PASS_FAIL].values[0] content = results_table.loc[results_table[ENGINE] == e, "links_error"].values[0] - results_table.loc[results_table[ENGINE] == e, PASS_FAIL] = collapsible_content(content, title) - results_table.loc[results_table[ENGINE] == e, "name"] = collapsible_content(content=f'{ENGINES[e]["url"]}
    {ENGINES[e]["status"]}', title=f'{ENGINES[e]["name"]}') - + results_table.loc[results_table[ENGINE] == e, PASS_FAIL] = collapsible_content( + content, title + ) + results_table.loc[results_table[ENGINE] == e, "name"] = collapsible_content( + content=f'{ENGINES[e]["url"]}
    {ENGINES[e]["status"]}', + title=f'{ENGINES[e]["name"]}', + ) + return results_table + def process_log_yml_dict(log_yml_dict): status = "" error_message = "" exception_type = "" if log_yml_dict == {}: - return {"status":"FAIL", "error_message":"Error unknown. The log.yml containing error information was not found.","exception_type": ""} + return { + "status": "FAIL", + "error_message": "Error unknown. The log.yml containing error information was not found.", + "exception_type": "", + } log_yml_str = str(log_yml_dict) - if log_yml_dict['status'] == 'SUCCEEDED': - status = 'pass' + if log_yml_dict["status"] == "SUCCEEDED": + status = "pass" # to deal with cases like amici where the d1 plot max x is half the expected value - pattern_max_number_of_steps = "simulation failed: Reached maximum number of steps" + pattern_max_number_of_steps = ( + "simulation failed: Reached maximum number of steps" + ) pattern_match = re.search(pattern_max_number_of_steps, log_yml_str) if pattern_match: - status = 'FAIL' - error_message = 'Reached maximum number of steps' - elif log_yml_dict['status'] == 'FAILED': - status = 'FAIL' - exception = log_yml_dict['exception'] - error_message = exception['message'] - exception_type = exception['type'] - # in the case of vcell the status is QUEUED - elif log_yml_dict['status'] == 'QUEUED': - status = 'FAIL' - error_message = 'status: QUEUED' + status = "FAIL" + error_message = "Reached maximum number of steps" + elif log_yml_dict["status"] == "FAILED": + status = "FAIL" + exception = log_yml_dict["exception"] + error_message = exception["message"] + exception_type = exception["type"] + # in the case of vcell the status is QUEUED + elif log_yml_dict["status"] == "QUEUED": + status = "FAIL" + error_message = "status: QUEUED" else: status = None - return {"status":status, "error_message":error_message,"exception_type": exception_type} + return { + "status": status, + "error_message": error_message, + "exception_type": exception_type, + } + +def run_biosimulators_remotely( + engine_keys, + sedml_file_name, + sbml_file_name, + d1_plots_remote_dir, + test_folder="tests", +): + """run with directory pointing towards the location of the sedml and sbml files""" -def run_biosimulators_remotely(engine_keys, - sedml_file_name, - sbml_file_name, - d1_plots_remote_dir, - test_folder='tests'): - - """ run with directory pointing towards the location of the sedml and sbml files""" - engines = {k: v for k, v in ENGINES.items() if k in engine_keys} - remote_output_dir = 'remote_results' + remote_output_dir = "remote_results" remote_output_dir = os.path.join(test_folder, remote_output_dir) results_remote = dict() for e in engines.keys(): results_remote[e] = run_biosimulators_remote(e, sedml_file_name, sbml_file_name) - + extract_dir_dict = dict() for e, link in results_remote.items(): try: extract_dir = get_remote_results(e, link["download"], remote_output_dir) except Exception as emessage: - print(f'Error downloading {e} results: {emessage}') + print(f"Error downloading {e} results: {emessage}") continue extract_dir_dict[e] = extract_dir for e, extract_dir in extract_dir_dict.items(): - log_yml_path = find_file_in_dir('log.yml', extract_dir)[0] + log_yml_path = find_file_in_dir("log.yml", extract_dir)[0] with open(log_yml_path) as f: log_yml_dict = yaml.safe_load(f) results_remote[e]["log_yml"] = log_yml_dict - file_paths = find_files(remote_output_dir, '.pdf') + file_paths = find_files(remote_output_dir, ".pdf") move_d1_files(file_paths, d1_plots_remote_dir) # remove the remote results directory if os.path.exists(remote_output_dir): shutil.rmtree(remote_output_dir) - print('Removed ' + remote_output_dir + ' folder') + print("Removed " + remote_output_dir + " folder") return results_remote -def run_biosimulators_locally(engine_keys, - sedml_file_name, - sbml_file_name, - d1_plots_local_dir, - test_folder='tests'): - + +def run_biosimulators_locally( + engine_keys, + sedml_file_name, + sbml_file_name, + d1_plots_local_dir, + test_folder="tests", +): engines = {k: v for k, v in ENGINES.items() if k in engine_keys} results_local = {} - output_folder = 'local_results' + output_folder = "local_results" local_output_dir = os.path.join(test_folder, output_folder) for e in engines.keys(): - print('Running ' + e) + print("Running " + e) local_output_dir_e = os.path.abspath(os.path.join(local_output_dir, e)) print(local_output_dir_e) - results_local[e] = run_biosimulators_docker(e, sedml_file_name, sbml_file_name, output_dir=local_output_dir_e) + results_local[e] = run_biosimulators_docker( + e, sedml_file_name, sbml_file_name, output_dir=local_output_dir_e + ) - file_paths = find_files(local_output_dir, '.pdf') - print('file paths:', file_paths) + file_paths = find_files(local_output_dir, ".pdf") + print("file paths:", file_paths) move_d1_files(file_paths, d1_plots_local_dir) # if it exists remove the output folder if os.path.exists(local_output_dir): shutil.rmtree(local_output_dir) - print('Removed ' + local_output_dir + ' folder') + print("Removed " + local_output_dir + " folder") return results_local -def create_combined_results_table(results_remote, - results_local, - sedml_file_name, - sbml_file_name, - d1_plots_local_dir, - d1_plots_remote_dir, - test_folder='tests'): - suffix_remote = ' (R)' - suffix_local = ' (L)' +def create_combined_results_table( + results_remote, + results_local, + sedml_file_name, + sbml_file_name, + d1_plots_local_dir, + d1_plots_remote_dir, + test_folder="tests", +): + suffix_remote = " (R)" + suffix_local = " (L)" # save results_remote and results_local as json files with dicts - path_to_results_remote = os.path.join(test_folder, 'results_remote.json') - path_to_results_local = os.path.join(test_folder, 'results_local.json') + path_to_results_remote = os.path.join(test_folder, "results_remote.json") + path_to_results_local = os.path.join(test_folder, "results_local.json") - with open(path_to_results_remote, 'w') as f: + with open(path_to_results_remote, "w") as f: json.dump(results_remote, f, indent=4) - with open(path_to_results_local, 'w') as f: + with open(path_to_results_local, "w") as f: json.dump(results_local, f, indent=4) - + # Create results tables for remote and local results - results_table_remote = create_results_table(results_remote, sbml_file_name, sedml_file_name, d1_plots_remote_dir) - results_table_local = create_results_table(results_local, sbml_file_name, sedml_file_name, d1_plots_local_dir) + results_table_remote = create_results_table( + results_remote, sbml_file_name, sedml_file_name, d1_plots_remote_dir + ) + results_table_local = create_results_table( + results_local, sbml_file_name, sedml_file_name, d1_plots_local_dir + ) - shared_columns = [ENGINE, COMPAT, 'name'] - results_table_remote.columns = [f"{col}{suffix_remote}" if col not in shared_columns else col for col in results_table_remote.columns] - results_table_local.columns = [f"{col}{suffix_local}" if col not in shared_columns else col for col in results_table_local.columns] + shared_columns = [ENGINE, COMPAT, "name"] + results_table_remote.columns = [ + f"{col}{suffix_remote}" if col not in shared_columns else col + for col in results_table_remote.columns + ] + results_table_local.columns = [ + f"{col}{suffix_local}" if col not in shared_columns else col + for col in results_table_local.columns + ] + + combined_results = pd.merge( + results_table_remote, results_table_local, on=shared_columns, how="outer" + ) + combined_results = combined_results.reindex( + columns=[ENGINE] + sorted(combined_results.columns[1:]) + ) + combined_results = combined_results.drop(columns=[ENGINE]).rename( + columns={"name": ENGINE} + ) - combined_results = pd.merge(results_table_remote, results_table_local, on=shared_columns, how='outer') - combined_results = combined_results.reindex(columns=[ENGINE] + sorted(combined_results.columns[1:])) - combined_results = combined_results.drop(columns=[ENGINE]).rename(columns={"name": ENGINE}) - # Define the order of columns cols_order = [ - ENGINE, - COMPAT, - f"{PASS_FAIL}{suffix_remote}", f"{PASS_FAIL}{suffix_local}", - f"{D1}{suffix_remote}", f"{D1}{suffix_local}" + ENGINE, + COMPAT, + f"{PASS_FAIL}{suffix_remote}", + f"{PASS_FAIL}{suffix_local}", + f"{D1}{suffix_remote}", + f"{D1}{suffix_local}", ] combined_results = combined_results[cols_order] # Save the results to a Markdown file with utf-8 encoding - path_to_results = os.path.join(test_folder, 'results_compatibility_biosimulators.md') - print('Saving results to:', path_to_results) - with open(path_to_results, 'w', encoding='utf-8') as f: + path_to_results = os.path.join( + test_folder, "results_compatibility_biosimulators.md" + ) + print("Saving results to:", path_to_results) + with open(path_to_results, "w", encoding="utf-8") as f: f.write(combined_results.to_markdown(index=False)) - print('Number of columns in md table:', len(combined_results.columns)) - print('Number of rows in md table:', len(combined_results)) - print(combined_results.head()) + print("Number of columns in md table:", len(combined_results.columns)) + print("Number of rows in md table:", len(combined_results)) + print(combined_results.head()) return combined_results -def run_biosimulators_remotely_and_locally(engine_keys, - sedml_file_name, - sbml_file_name, - d1_plots_remote_dir, - d1_plots_local_dir, - test_folder='tests'): - - results_remote = run_biosimulators_remotely(engine_keys, - sedml_file_name=sedml_file_name, - sbml_file_name=sbml_file_name, - d1_plots_remote_dir=d1_plots_remote_dir, - test_folder=test_folder) - - results_local = run_biosimulators_locally(engine_keys, - sedml_file_name=sedml_file_name, - sbml_file_name=sbml_file_name, - d1_plots_local_dir=d1_plots_local_dir, - test_folder=test_folder) - - results_table = create_combined_results_table(results_remote, - results_local, - sedml_file_name=sedml_file_name, - sbml_file_name=sbml_file_name, - d1_plots_local_dir=d1_plots_local_dir, - d1_plots_remote_dir=d1_plots_remote_dir, - test_folder=test_folder) - +def run_biosimulators_remotely_and_locally( + engine_keys, + sedml_file_name, + sbml_file_name, + d1_plots_remote_dir, + d1_plots_local_dir, + test_folder="tests", +): + results_remote = run_biosimulators_remotely( + engine_keys, + sedml_file_name=sedml_file_name, + sbml_file_name=sbml_file_name, + d1_plots_remote_dir=d1_plots_remote_dir, + test_folder=test_folder, + ) + + results_local = run_biosimulators_locally( + engine_keys, + sedml_file_name=sedml_file_name, + sbml_file_name=sbml_file_name, + d1_plots_local_dir=d1_plots_local_dir, + test_folder=test_folder, + ) + + results_table = create_combined_results_table( + results_remote, + results_local, + sedml_file_name=sedml_file_name, + sbml_file_name=sbml_file_name, + d1_plots_local_dir=d1_plots_local_dir, + d1_plots_remote_dir=d1_plots_remote_dir, + test_folder=test_folder, + ) + return results_table From 47f5b2c6fe33a06fb632b9edfdec2d3db1c895aa Mon Sep 17 00:00:00 2001 From: Stella <30465823+stellaprins@users.noreply.github.com> Date: Mon, 20 Jan 2025 10:55:55 +0000 Subject: [PATCH 7/9] adjust test suite table processing (add tellurium and copasi remote columns, batch remote submissions, enable pickling, skip native tellurium float errors, etc) (#114) --- test_suite/process_test_suite.py | 469 +++- test_suite/results.md | 3650 +++++++++++++++--------------- utils/__init__.py | 29 +- 3 files changed, 2294 insertions(+), 1854 deletions(-) diff --git a/test_suite/process_test_suite.py b/test_suite/process_test_suite.py index cecc00f7..bbda8788 100755 --- a/test_suite/process_test_suite.py +++ b/test_suite/process_test_suite.py @@ -9,10 +9,16 @@ import glob import os +import pickle +import shutil import sys +import time import warnings +import zipfile import matplotlib +import requests +import yaml from pyneuroml.sbml import validate_sbml_files from pyneuroml.sedml import validate_sedml_files @@ -20,9 +26,10 @@ import utils md_description = """ -Markdown file description goes here. +SBML Test Suite validation and simulation results using Tellurium installed natively and Tellurium and COPASI run remotely through BioSimulators. """ +tmp_dir = "tmplocalfiles" # suppress stdout output from validation functions to make progress counter readable suppress_stdout = True @@ -51,7 +58,16 @@ def parse_arguments(): nargs="+", type=str, default=[], - help="Limit to the cases listed in the file. Empty list means no limit", + help="Limit to the cases listed. No specific cases will be tested when an empty list is provided.", + ) + + parser.add_argument( + "--skip", + action="extend", + nargs="+", + type=str, + default=[], + help="Skip cases listed.", ) parser.add_argument( @@ -104,21 +120,261 @@ def add_case_url(case, fpath, url_base): return new_item +def get_test_suite_files_paths(suite_path_abs, sbml_level_version, subfolders): + start_dir = os.getcwd() + # get lists of sedml and sbml file paths in subfolders + file_paths = {} + + for subfolder in subfolders: + dir_path = os.path.join(suite_path_abs, subfolder) + os.chdir(dir_path) + if sbml_level_version == "highest": + sedml_file_paths = sorted(glob.glob("*-sbml-*sedml.xml")) + highest_sedml_path = ( + os.path.abspath(sedml_file_paths[-1]) if sedml_file_paths else "" + ) + highest_sbml_path = ( + os.path.abspath(highest_sedml_path.replace("-sedml.xml", ".xml")) + if highest_sedml_path + else "" + ) + else: + sbml_file_name = f"*-sbml-{sbml_level_version}.xml" + sedml_file_name = f"*-sbml-{sbml_level_version}-sedml.xml" + highest_sbml_path = ( + os.path.abspath(glob.glob(sbml_file_name)[0]) + if glob.glob(sbml_file_name) + else "" + ) + highest_sedml_path = ( + os.path.abspath(glob.glob(sedml_file_name)[0]) + if glob.glob(sedml_file_name) + else "" + ) + + if not highest_sedml_path or not highest_sbml_path: + print( + f"Folder {subfolder} has no SBML or SED-ML files {sbml_level_version}" + ) + continue + + file_paths[subfolder] = {"sbml": highest_sbml_path, "sedml": highest_sedml_path} + + os.chdir(start_dir) + return file_paths + + +def load_pickle(file_path): + if os.path.exists(file_path): + try: + with open(file_path, "rb") as f: + return pickle.load(f) + except Exception as e: + print(f"Error loading pickle file {file_path}: {e}") + return {} + return {} + + +def save_pickle(data, file_path): + try: + with open(file_path, "wb") as f: + pickle.dump(data, f) + except Exception as e: + print(f"Error saving pickle file {file_path}: {e}") + + +def run_test_suite_batch_remotely(engine_keys, file_paths, limit=0, use_pickle=True): + file_paths_items = list(file_paths.items()) # Convert dict_items to a list + results_remote_links = {} # Initialize results_remote_links + + for subfolder, paths in ( + file_paths_items if limit == 0 else file_paths_items[:limit] + ): + sbml_file_path = paths["sbml"] + sedml_file_path = paths["sedml"] + file_path_dir = os.path.dirname(sedml_file_path) + os.chdir(file_path_dir) + + pickle_file_path = os.path.join(file_path_dir, f"{subfolder}_remote_links.p") + results_remote_links = {subfolder: {"folder_dir": file_path_dir}} + + if use_pickle: + if os.path.exists(pickle_file_path): + print(f"Pickled links found for test suite example {subfolder}") + continue + else: + print(f"No pickled links found for test suite example {subfolder}") + + new_results_remote_links = {} + for engine in engine_keys: + try: + results_remote = utils.run_biosimulators_remote( + engine, + os.path.basename(sedml_file_path), + os.path.basename(sbml_file_path), + ) + new_results_remote_links[engine] = results_remote + except Exception as e: + print(f"Error processing {subfolder} with engine {engine}: {e}") + new_results_remote_links[engine] = {"error": str(e)} + + results_remote_links[subfolder].update(new_results_remote_links) + save_pickle(results_remote_links, pickle_file_path) + print("All test suite examples submitted for remote testing.") + return + + +def merge_pickled_links(file_paths, limit=0): + file_paths_items = list(file_paths.items()) + merged_links = {} + + for subfolder, paths in ( + file_paths_items if limit == 0 else file_paths_items[:limit] + ): + file_path_dir = os.path.dirname(paths["sedml"]) + pickle_file_path = os.path.join(file_path_dir, f"{subfolder}_remote_links.p") + pickled_data = load_pickle(pickle_file_path) + merged_links.update(pickled_data) + + return merged_links + + +def get_remote_results_from_links(links_dict): + """Run with directory pointing towards the location of the sedml and sbml files""" + extract_dir_dict = download_remote_test_suite_results(links_dict) + log_yml_dict = create_log_yml_dict(extract_dir_dict) + # remove_output_folders(extract_dir_dict) + return log_yml_dict + + +def download_remote_test_suite_results(links_dict, refresh=False, limit=0): + """ + If refresh is True, download results even if a zip file is already present in the folder. + limit is the number of subfolders to process, 0 means no limit. + """ + extract_dir_dict = {} + for subfolder, links in ( + links_dict.items() if limit == 0 else list(links_dict.items())[:limit] + ): + folder_dir = links["folder_dir"] + links.pop("folder_dir") # remove folder_dir key from links_dict + subfolder_dict = {"folder_dir": folder_dir, "extract_dir": {}} + + for engine, engine_links in links.items(): + if engine in utils.ENGINES.keys() and "download" in engine_links: + os.chdir(folder_dir) + folder = os.path.join("results_remote", engine) + if not os.path.exists(folder): + os.makedirs(folder) + os.chdir(folder) + zip_in_folder = any([f.endswith(".zip") for f in os.listdir()]) + if not zip_in_folder or refresh: + extract_dir = utils.download_file_from_link( + engine, engine_links["download"] + ) + print(f"Downloaded {engine} results to {extract_dir}") + else: + zip_path = [f for f in os.listdir() if f.endswith(".zip")][0] + extract_dir = os.path.join(folder_dir, folder, zip_path) + + subfolder_dict["extract_dir"][engine] = extract_dir + + extract_dir_dict[subfolder] = subfolder_dict + + return extract_dir_dict + + +def unzip_files(file_paths=[]): + """Unzip all zip files in the current directory if no file paths are provided""" + if file_paths != []: + zip_files = file_paths + zip_files = [f for f in os.listdir() if f.endswith(".zip")] + for zip_file in zip_files: + with zipfile.ZipFile(zip_file, "r") as zip_ref: + zip_ref.extractall() + + +def create_log_yml_dict(extract_dir_dict): + log_yml_dict = {} + for subfolder, extract_dirs in extract_dir_dict.items(): + log_yml_dict[subfolder] = {} + for engine, zip_file in extract_dirs["extract_dir"].items(): + output_folder = os.path.dirname(zip_file) + os.chdir(output_folder) + unzip_files() + log_yml_files = utils.find_files(output_folder, "log.yml") + if log_yml_files: + log_yml_path = log_yml_files[0] + with open(log_yml_path) as f: + log_yml = yaml.safe_load(f) + else: + log_yml = {} + log_yml_dict[subfolder][engine] = {"log_yml": log_yml} + return log_yml_dict + + +def process_log_yml_dict(log_yml_dict): + results_remote = {} + for subfolder in list(log_yml_dict.keys()): + print(f"Processing log yml file for {subfolder}") + if subfolder in log_yml_dict: + results_remote[subfolder] = {} + for e in list(log_yml_dict[subfolder].keys()): + # only if log_yml key is present + if "log_yml" in log_yml_dict[subfolder][e]: + results_remote[subfolder][e] = utils.process_log_yml_dict( + log_yml_dict[subfolder][e]["log_yml"] + ) + else: + results_remote[subfolder][e] = { + "status": "ERROR", + "error_message": "log_yml key not found", + "exception_type": "KeyError", + } + return results_remote + + +def remove_output_folders(extract_dir_dict): + for _, extract_dirs in extract_dir_dict.items(): + os.chdir(extract_dirs["folder_dir"]) + if os.path.exists("results_remote"): + shutil.rmtree("results_remote") + return + + +def download_test_suite( + url="https://github.com/sbmlteam/sbml-test-suite/releases/download/3.4.0/semantic_tests_with_sedml_and_graphs.v3.4.0.zip", +): + """Download and unzip the test suite zip file, replacing existing files if they exist""" + + if os.path.exists("SBML_test_suite"): + shutil.rmtree("SBML_test_suite") + os.makedirs("SBML_test_suite", exist_ok=True) + os.chdir("SBML_test_suite") + url_filename = os.path.basename(url) + + # Download and extract the zip file + response = requests.get(url) + with open(url_filename, "wb") as f: + f.write(response.content) + with zipfile.ZipFile(url_filename, "r") as zip_ref: + zip_ref.extractall() + return + + def process_cases(args): """ process the test cases and write results out as a markdown table with links to the test case files online (as noted above the sedml files are actually in a zip file) with a summary of how many cases were tested and how many tests failed """ + # set up the markdown table - column_labels = ( - "case|valid-sbml|valid-sbml-units|valid-sedml|tellurium|xmlns-sbml-missing" - ) - column_keys = "case|valid_sbml|valid_sbml_units|valid_sedml|tellurium_outcome|xmlns_sbml_missing" + column_labels = "case|valid-sbml|valid-sbml-units|valid-sedml|tellurium|xmlns-sbml-missing|tellurium-remote|copasi-remote" + column_keys = "case|valid_sbml|valid_sbml_units|valid_sedml|tellurium_outcome|xmlns_sbml_missing|tellurium_remote_outcome|copasi_remote_outcome" mtab = utils.MarkdownTable(column_labels, column_keys) # set the path to the test suite - starting_dir = os.getcwd() # where results will be written os.chdir(args.suite_path) # change to test suite directory suite_path_abs = os.getcwd() # absolute path to test suite @@ -132,16 +388,31 @@ def process_cases(args): category=UserWarning, message="FigureCanvasAgg is non-interactive, and thus cannot be shown", ) - subfolders = ( - os.listdir(suite_path_abs) - if args.limit == 0 - else os.listdir(suite_path_abs)[: args.limit] + + if args.cases: + subfolders = args.cases + else: + subfolders = [ + f + for f in os.listdir(suite_path_abs) + if os.path.isdir(os.path.join(suite_path_abs, f)) + ] + if args.limit != 0: + subfolders = subfolders[: args.limit] + + # submit remote runs and get results or use pickled results + remote_results, remote_links = get_remote_results( + suite_path=suite_path_abs, + sbml_level_version=args.sbml_level_version, + subfolders=subfolders, ) for subfolder in subfolders: + subfolder_dir = os.path.join(suite_path_abs, subfolder) + os.chdir(subfolder_dir) # if sbml_level_version is empty string (default), find the highest level and version in the folder if args.sbml_level_version == "highest": - sedml_file_paths = glob.glob(os.path.join(subfolder, "*-sbml-*sedml.xml")) + sedml_file_paths = glob.glob("*-sbml-*sedml.xml") # get last entry in list of sedml_file_paths (because it has the highest level and version number considering the alphabetical order and naming convention) sedml_file_path = sedml_file_paths[-1] if sedml_file_paths != [] else [] sbml_file_path = ( @@ -154,13 +425,13 @@ def process_cases(args): sbml_file_name = f"*-sbml-{args.sbml_level_version}.xml" sedml_file_name = f"*-sbml-{args.sbml_level_version}-sedml.xml" sbml_file_path = ( - glob.glob(os.path.join(subfolder, sbml_file_name))[0] - if len(glob.glob(os.path.join(subfolder, sbml_file_name))) > 0 + glob.glob(sbml_file_name)[0] + if len(glob.glob(sbml_file_name)) > 0 else [] ) sedml_file_path = ( - glob.glob(os.path.join(subfolder, sedml_file_name))[0] - if len(glob.glob(os.path.join(subfolder, sedml_file_name))) > 0 + glob.glob(sedml_file_name)[0] + if len(glob.glob(subfolder, sedml_file_name)) > 0 else [] ) @@ -169,7 +440,6 @@ def process_cases(args): f"Folder {subfolder} has no SBML or SED-ML files {args.sbml_level_version}" ) continue - print(f"Processing {sbml_file_path} and {sedml_file_path}") # create table with results mtab.new_row() @@ -186,35 +456,184 @@ def process_cases(args): [sbml_file_path], strict_units=True ) mtab["valid_sedml"] = validate_sedml_files([sedml_file_path]) - mtab["tellurium_outcome"] = utils.test_engine( - "tellurium", sedml_file_path - ) # run tellurium directly + + # these give float errors when running the models in tellurium natively which leads to 'reset' errors in subsequent cases that would otherwise pass. + # For now these cases are skipped. + subfolders_float_errors = [ + "00952", + "00953", + "00962", + "00963", + "00964", + "00965", + "00966", + "00967", + "01588", + "01590", + "01591", + "01599", + "01605", + "01627", + ] + + if subfolder in subfolders_float_errors: + print(f"Skipping subfolder {subfolder} with float errors") + mtab["tellurium_outcome"] = ( + "
    skippedCase is skipped because it leads to a float error when trying to run it in tellurium natively, which leads to reset errors in subsequent cases that would otherwise pass.
    " + ) + + elif subfolder in args.skip: + print(f"Skipping subfolder {subfolder}") + mtab["tellurium_outcome"] = ( + "
    skippedCase in skip list
    " + ) + + else: + mtab["tellurium_outcome"] = utils.test_engine( + "tellurium", sedml_file_path + ) # run tellurium directly + sup.restore() mtab["xmlns_sbml_missing"] = utils.xmlns_sbml_attribute_missing(sedml_file_path) + + if subfolder in remote_results.keys(): + for e in list(remote_results[subfolder].keys()): + print(f"Processing remote results for {subfolder} with engine {e}") + + if remote_results[subfolder][e]["error_message"] != "": + error_message = utils.safe_md_string( + remote_results[subfolder][e]["error_message"] + ) + exception_type = utils.safe_md_string( + remote_results[subfolder][e]["exception_type"] + ) + error_message_string = f"Error message: ```{error_message}```

    Exception type: ```{exception_type}```" + info_submission = f'
    {remote_results[subfolder][e]["status"]}[Download]({remote_links[subfolder][e]["download"]})
    [Logs]({remote_links[subfolder][e]["logs"]})
    [View]({remote_links[subfolder][e]["view"]})

    HTTP response: {str(remote_links[subfolder][e]["response"])}

    {error_message_string}' + else: + info_submission = f'
    {remote_results[subfolder][e]["status"]}[Download]({remote_links[subfolder][e]["download"]})
    [Logs]({remote_links[subfolder][e]["logs"]})
    [View]({remote_links[subfolder][e]["view"]})

    HTTP response: {str(remote_links[subfolder][e]["response"])}' + + mtab_remote_outcome_key = f"{e}_remote_outcome" + mtab[mtab_remote_outcome_key] = info_submission + matplotlib.pyplot.close("all") # supresses error from building up plots # give failure counts - for key in ["valid_sbml", "valid_sbml_units", "valid_sedml"]: - mtab.add_count(key, lambda x: not x, "n_fail={count}") + for key in [ + "valid_sbml", + "valid_sbml_units", + "valid_sedml", + ]: + mtab.add_count(key, lambda x: x is False, "n_fail={count}") mtab.transform_column(key, lambda x: "pass" if x else "FAIL") + for key in [ + "tellurium_remote_outcome", + "copasi_remote_outcome", + ]: + mtab.add_count( + key, lambda x: "
    pass" in x, "pass={count}" + ) + # add counts for cases and missing xmlns_sbml attributes mtab.add_count("case", lambda _: True, "n={count}") - mtab.add_count("xmlns_sbml_missing", lambda x: x, "n={count}") + mtab.add_count("xmlns_sbml_missing", lambda x: x is True, "n={count}") # process engine outcomes column(s) mtab.simple_summary("tellurium_outcome") mtab.transform_column("tellurium_outcome") # write out to file - os.chdir(starting_dir) + os.chdir(os.path.dirname(os.path.realpath(__file__))) + print(f"Writing results to {args.output_file}") with open(args.output_file, "w") as fout: fout.write(md_description) mtab.write(fout) +def get_remote_results( + suite_path, sbml_level_version, subfolders, use_pickle=True, remove_output=False +): + """Run with directory pointing towards the location of the sedml and sbml files""" + + # pickle of all results_remote and remote_links together + if use_pickle: + os.chdir(suite_path) + if os.path.exists("results_remote.p") and os.path.exists("remote_links.p"): + results_remote = load_pickle("results_remote.p") + remote_links = load_pickle("remote_links.p") + return results_remote, remote_links + else: + print("No pickled results found. Running remote tests.") + print("Running remote tests.") + file_paths = get_test_suite_files_paths(suite_path, sbml_level_version, subfolders) + run_test_suite_batch_remotely(["copasi", "tellurium"], file_paths, limit=0) + remote_links = merge_pickled_links(file_paths, limit=0) + extract_dir_dict = download_remote_test_suite_results(remote_links) + log_yml_dict = create_log_yml_dict(extract_dir_dict) + results_remote = process_log_yml_dict(log_yml_dict) + os.chdir(os.path.dirname(os.path.realpath(__file__))) + # in suite_path, save pickled results + os.chdir(suite_path) + save_pickle(results_remote, "results_remote.p") + save_pickle(remote_links, "remote_links.p") + if remove_output: + remove_output_folders(extract_dir_dict) + return results_remote, remote_links + + +def remove_all_pickles_in_dir(dir_path): + for root, _, files in os.walk(dir_path): + for file in files: + if file.endswith(".p"): + os.remove(os.path.join(root, file)) + return + + +def remove_all_pickles_in_folder(dir_path): + for file in os.listdir(dir_path): + if file.endswith(".p"): + os.remove(os.path.join(dir_path, file)) + return + + +def remove_certain_pickles_in_dir(dir_path, subfolders): + for subfolder in subfolders: + pickle_file_path = os.path.join(dir_path, subfolder) + remove_all_pickles_in_dir(pickle_file_path) + return + + +def run_test_suite_with_retries(max_retries=10): + retries = 0 + time_out = 10 + while retries < max_retries: + try: + process_cases(args) + break + except Exception as e: + print(f"Error processing cases: {e}") + retries += 1 + if retries < max_retries: + print( + f"Retrying in {time_out} seconds... (Attempt {retries}/{max_retries})" + ) + time.sleep(time_out) + else: + print("Max retries exceeded. Exiting script.") + + if __name__ == "__main__": + refresh = False + if refresh: + download_test_suite( + url="https://github.com/sbmlteam/sbml-test-suite/releases/download/3.4.0/semantic_tests_with_sedml_and_graphs.v3.4.0.zip" + ) + args = parse_arguments() + args.suite_path = os.path.join( + os.path.dirname(os.path.realpath(__file__)), "SBML_test_suite", "semantic" + ) + args.limit = 0 - process_cases(args) + run_test_suite_with_retries() diff --git a/test_suite/results.md b/test_suite/results.md index 72050007..c31ca277 100644 --- a/test_suite/results.md +++ b/test_suite/results.md @@ -1,1826 +1,1826 @@ -Markdown file description goes here. -|case|valid-sbml|valid-sbml-units|valid-sedml|tellurium|xmlns-sbml-missing| -|---|---|---|---|---|---| -|n=1821|n_fail=1|n_fail=5|n_fail=0|
    pass=863 FAIL=958n_algebraic=124 n_delay=51 n_float=14 n_reset=759 n_stochiometry=6 n_SpeciesRef=4
    |n=1821| -|[00001\00001-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00001\00001-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00002\00002-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00002\00002-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00003\00003-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00003\00003-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00004\00004-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00004\00004-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00005\00005-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00005\00005-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00006\00006-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00006\00006-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00007\00007-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00007\00007-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00008\00008-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00008\00008-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00009\00009-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00009\00009-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00010\00010-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00010\00010-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00011\00011-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00011\00011-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00012\00012-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00012\00012-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00013\00013-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00013\00013-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00014\00014-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00014\00014-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00015\00015-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00015\00015-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00016\00016-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00016\00016-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00017\00017-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00017\00017-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00018\00018-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00018\00018-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00019\00019-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00019\00019-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00020\00020-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00020\00020-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00021\00021-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00021\00021-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00022\00022-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00022\00022-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00023\00023-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00023\00023-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00024\00024-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00024\00024-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00025\00025-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00025\00025-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00026\00026-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00026\00026-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00027\00027-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00027\00027-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00028\00028-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00028\00028-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00029\00029-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00029\00029-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00030\00030-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00030\00030-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00031\00031-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00031\00031-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00032\00032-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00032\00032-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00033\00033-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00033\00033-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00034\00034-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00034\00034-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00035\00035-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00035\00035-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00036\00036-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00036\00036-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00037\00037-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00037\00037-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00038\00038-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00038\00038-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00039\00039-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00039\00039-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = -1 * k1 + S1 + S2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00040\00040-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00040\00040-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = -1 * k2 + S1 + S2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00041\00041-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00041\00041-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00042\00042-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00042\00042-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00043\00043-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00043\00043-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00044\00044-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00044\00044-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00045\00045-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00045\00045-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00046\00046-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00046\00046-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00047\00047-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00047\00047-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00048\00048-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00048\00048-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00049\00049-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00049\00049-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00050\00050-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00050\00050-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00051\00051-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00051\00051-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00052\00052-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00052\00052-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00053\00053-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00053\00053-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00054\00054-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00054\00054-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00055\00055-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00055\00055-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00056\00056-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00056\00056-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00057\00057-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00057\00057-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00058\00058-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00058\00058-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00059\00059-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00059\00059-sbml-l3v1.xml)|pass|pass|pass|pass|True| -|[00060\00060-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00060\00060-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00061\00061-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00061\00061-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00062\00062-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00062\00062-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00063\00063-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00063\00063-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00064\00064-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00064\00064-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00065\00065-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00065\00065-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00066\00066-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00066\00066-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00067\00067-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00067\00067-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00068\00068-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00068\00068-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00069\00069-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00069\00069-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00070\00070-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00070\00070-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00071\00071-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00071\00071-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00072\00072-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00072\00072-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00073\00073-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00073\00073-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00074\00074-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00074\00074-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00075\00075-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00075\00075-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00076\00076-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00076\00076-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00077\00077-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00077\00077-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00078\00078-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00078\00078-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00079\00079-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00079\00079-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00080\00080-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00080\00080-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00081\00081-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00081\00081-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00082\00082-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00082\00082-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00083\00083-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00083\00083-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00084\00084-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00084\00084-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00085\00085-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00085\00085-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00086\00086-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00086\00086-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00087\00087-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00087\00087-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00088\00088-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00088\00088-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00089\00089-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00089\00089-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00090\00090-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00090\00090-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00091\00091-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00091\00091-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00092\00092-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00092\00092-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00093\00093-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00093\00093-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00094\00094-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00094\00094-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00095\00095-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00095\00095-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00096\00096-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00096\00096-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00097\00097-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00097\00097-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00098\00098-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00098\00098-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00099\00099-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00099\00099-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00100\00100-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00100\00100-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00101\00101-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00101\00101-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00102\00102-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00102\00102-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00103\00103-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00103\00103-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00104\00104-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00104\00104-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00105\00105-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00105\00105-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00106\00106-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00106\00106-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00107\00107-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00107\00107-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00108\00108-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00108\00108-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00109\00109-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00109\00109-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00110\00110-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00110\00110-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00111\00111-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00111\00111-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00112\00112-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00112\00112-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00113\00113-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00113\00113-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00114\00114-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00114\00114-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00115\00115-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00115\00115-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00116\00116-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00116\00116-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00117\00117-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00117\00117-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00118\00118-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00118\00118-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00119\00119-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00119\00119-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00120\00120-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00120\00120-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00121\00121-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00121\00121-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00122\00122-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00122\00122-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00123\00123-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00123\00123-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00124\00124-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00124\00124-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00125\00125-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00125\00125-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00126\00126-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00126\00126-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00127\00127-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00127\00127-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00128\00128-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00128\00128-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00129\00129-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00129\00129-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00130\00130-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00130\00130-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00131\00131-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00131\00131-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00132\00132-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00132\00132-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00133\00133-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00133\00133-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00134\00134-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00134\00134-sbml-l3v1.xml)|pass|pass|pass|pass|True| -|[00135\00135-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00135\00135-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00136\00136-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00136\00136-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00137\00137-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00137\00137-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00138\00138-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00138\00138-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00139\00139-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00139\00139-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00140\00140-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00140\00140-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00141\00141-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00141\00141-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00142\00142-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00142\00142-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00143\00143-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00143\00143-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00144\00144-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00144\00144-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00145\00145-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00145\00145-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00146\00146-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00146\00146-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00147\00147-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00147\00147-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00148\00148-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00148\00148-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00149\00149-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00149\00149-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00150\00150-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00150\00150-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00151\00151-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00151\00151-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00152\00152-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00152\00152-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00153\00153-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00153\00153-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00154\00154-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00154\00154-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00155\00155-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00155\00155-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00156\00156-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00156\00156-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00157\00157-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00157\00157-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00158\00158-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00158\00158-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00159\00159-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00159\00159-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00160\00160-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00160\00160-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00161\00161-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00161\00161-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00162\00162-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00162\00162-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00163\00163-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00163\00163-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00164\00164-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00164\00164-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00165\00165-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00165\00165-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00166\00166-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00166\00166-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00167\00167-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00167\00167-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00168\00168-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00168\00168-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00169\00169-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00169\00169-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00170\00170-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00170\00170-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00171\00171-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00171\00171-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00172\00172-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00172\00172-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00173\00173-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00173\00173-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00174\00174-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00174\00174-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00175\00175-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00175\00175-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00176\00176-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00176\00176-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00177\00177-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00177\00177-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00178\00178-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00178\00178-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00179\00179-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00179\00179-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00180\00180-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00180\00180-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00181\00181-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00181\00181-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00182\00182-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00182\00182-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = -1 * k1 + S1 + S2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00183\00183-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00183\00183-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00184\00184-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00184\00184-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = add(S1, add(S2, -1 * k1))' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00185\00185-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00185\00185-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00186\00186-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00186\00186-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00187\00187-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00187\00187-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00188\00188-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00188\00188-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00189\00189-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00189\00189-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00190\00190-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00190\00190-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00191\00191-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00191\00191-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00192\00192-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00192\00192-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00193\00193-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00193\00193-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00194\00194-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00194\00194-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00195\00195-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00195\00195-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00196\00196-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00196\00196-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00197\00197-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00197\00197-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00198\00198-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00198\00198-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00199\00199-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00199\00199-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00200\00200-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00200\00200-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00201\00201-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00201\00201-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00202\00202-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00202\00202-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00203\00203-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00203\00203-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00204\00204-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00204\00204-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00205\00205-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00205\00205-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00206\00206-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00206\00206-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00207\00207-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00207\00207-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00208\00208-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00208\00208-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00209\00209-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00209\00209-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00210\00210-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00210\00210-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00211\00211-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00211\00211-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00212\00212-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00212\00212-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00213\00213-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00213\00213-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00214\00214-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00214\00214-sbml-l3v2.xml)|pass|pass|pass|pass|True| 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-|[00491\00491-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00491\00491-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00492\00492-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00492\00492-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00493\00493-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00493\00493-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00494\00494-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00494\00494-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00495\00495-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00495\00495-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00496\00496-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00496\00496-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00497\00497-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00497\00497-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00498\00498-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00498\00498-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00499\00499-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00499\00499-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00500\00500-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00500\00500-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00501\00501-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00501\00501-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00502\00502-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00502\00502-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00503\00503-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00503\00503-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00504\00504-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00504\00504-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00505\00505-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00505\00505-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00506\00506-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00506\00506-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00507\00507-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00507\00507-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00508\00508-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00508\00508-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00509\00509-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00509\00509-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00510\00510-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00510\00510-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00511\00511-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00511\00511-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00512\00512-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00512\00512-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00513\00513-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00513\00513-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00514\00514-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00514\00514-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00515\00515-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00515\00515-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00516\00516-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00516\00516-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00517\00517-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00517\00517-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00518\00518-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00518\00518-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00519\00519-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00519\00519-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00520\00520-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00520\00520-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00521\00521-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00521\00521-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00522\00522-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00522\00522-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00523\00523-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00523\00523-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00524\00524-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00524\00524-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00525\00525-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00525\00525-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00526\00526-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00526\00526-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00527\00527-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00527\00527-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00528\00528-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00528\00528-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00529\00529-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00529\00529-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00530\00530-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00530\00530-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00531\00531-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00531\00531-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 - T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00532\00532-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00532\00532-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = -1 * S1 + T + X0 + X1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00533\00533-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00533\00533-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = k2 + -0.9' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00534\00534-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00534\00534-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = k2 + -1 * k3 + -0.2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00535\00535-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00535\00535-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00536\00536-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00536\00536-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = k1 + -0.1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00537\00537-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00537\00537-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = k2 + -0.2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00538\00538-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00538\00538-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = k2 + -0.25' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00539\00539-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00539\00539-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = C + -1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00540\00540-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00540\00540-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = C + -1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00541\00541-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00541\00541-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = C + -1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00542\00542-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00542\00542-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = C + -1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00543\00543-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00543\00543-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00544\00544-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00544\00544-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = C + -1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00545\00545-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00545\00545-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = C + -1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00546\00546-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00546\00546-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00547\00547-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00547\00547-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = C + -2.5' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00548\00548-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00548\00548-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = C + -0.75' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00549\00549-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00549\00549-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00550\00550-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00550\00550-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00551\00551-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00551\00551-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00552\00552-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00552\00552-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00553\00553-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00553\00553-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00554\00554-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00554\00554-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00555\00555-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00555\00555-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + S2 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00556\00556-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00556\00556-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = -1 * S1 + S4 + -1 * S5' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00557\00557-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00557\00557-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00558\00558-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00558\00558-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00559\00559-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00559\00559-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00560\00560-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00560\00560-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00561\00561-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00561\00561-sbml-l2v5.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00562\00562-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00562\00562-sbml-l2v5.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00563\00563-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00563\00563-sbml-l2v5.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00564\00564-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00564\00564-sbml-l2v5.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00565\00565-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00565\00565-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00566\00566-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00566\00566-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00567\00567-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00567\00567-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = multiply(k3 + 1, S1) + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00568\00568-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00568\00568-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = -1 * S1 + T + add(X0, X1)' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00569\00569-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00569\00569-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = subtract(k2, 0.9)' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00570\00570-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00570\00570-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = subtract(k2, k3) + -0.2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00571\00571-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00571\00571-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = subtract(multiply(k3 + 1, S1), T)' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00572\00572-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00572\00572-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = add(add(X0, X1), T) + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00573\00573-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00573\00573-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * p4 + -1 * p3' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00574\00574-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00574\00574-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = p1 + p2 + p3 + -1 * p4' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00575\00575-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00575\00575-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = k2 + -0.9' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00576\00576-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00576\00576-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = p4 + -1 * p1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00577\00577-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00577\00577-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00578\00578-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00578\00578-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00579\00579-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00579\00579-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00580\00580-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00580\00580-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00581\00581-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00581\00581-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00582\00582-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00582\00582-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00583\00583-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00583\00583-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00584\00584-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00584\00584-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00585\00585-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00585\00585-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00586\00586-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00586\00586-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00587\00587-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00587\00587-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00588\00588-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00588\00588-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00589\00589-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00589\00589-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00590\00590-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00590\00590-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00591\00591-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00591\00591-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00592\00592-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00592\00592-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00593\00593-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00593\00593-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00594\00594-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00594\00594-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00595\00595-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00595\00595-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00596\00596-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00596\00596-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00597\00597-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00597\00597-sbml-l3v1.xml)|pass|pass|pass|pass|True| -|[00598\00598-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00598\00598-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00599\00599-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00599\00599-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00600\00600-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00600\00600-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00601\00601-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00601\00601-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00602\00602-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00602\00602-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00603\00603-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00603\00603-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00604\00604-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00604\00604-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00605\00605-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00605\00605-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00606\00606-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00606\00606-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00607\00607-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00607\00607-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00608\00608-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00608\00608-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00609\00609-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00609\00609-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00610\00610-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00610\00610-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00611\00611-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00611\00611-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00612\00612-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00612\00612-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00613\00613-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00613\00613-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00614\00614-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00614\00614-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00615\00615-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00615\00615-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00616\00616-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00616\00616-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00617\00617-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00617\00617-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00618\00618-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00618\00618-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00619\00619-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00619\00619-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00620\00620-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00620\00620-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00621\00621-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00621\00621-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00622\00622-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00622\00622-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00623\00623-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00623\00623-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00624\00624-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00624\00624-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00625\00625-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00625\00625-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00626\00626-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00626\00626-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00627\00627-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00627\00627-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00628\00628-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00628\00628-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00629\00629-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00629\00629-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00630\00630-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00630\00630-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00631\00631-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00631\00631-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00632\00632-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00632\00632-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00633\00633-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00633\00633-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00634\00634-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00634\00634-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00635\00635-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00635\00635-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00636\00636-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00636\00636-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00637\00637-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00637\00637-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00638\00638-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00638\00638-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00639\00639-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00639\00639-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00640\00640-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00640\00640-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00641\00641-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00641\00641-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00642\00642-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00642\00642-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00643\00643-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00643\00643-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00644\00644-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00644\00644-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00645\00645-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00645\00645-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00646\00646-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00646\00646-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00647\00647-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00647\00647-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00648\00648-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00648\00648-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00649\00649-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00649\00649-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00650\00650-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00650\00650-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00651\00651-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00651\00651-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00652\00652-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00652\00652-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00653\00653-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00653\00653-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00654\00654-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00654\00654-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00655\00655-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00655\00655-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00656\00656-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00656\00656-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00657\00657-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00657\00657-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00658\00658-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00658\00658-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = -1 * k1 + S1 + S2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00659\00659-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00659\00659-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = -1 * k1 + S1 + S2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00660\00660-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00660\00660-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = -1 * k1 + S1 + S2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00661\00661-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00661\00661-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = -1 * S1 + T + X0 + X1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00662\00662-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00662\00662-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00663\00663-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00663\00663-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = k2 + -0.9' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00664\00664-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00664\00664-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = k2 + -0.9' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00665\00665-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00665\00665-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = -1 * S1 + T + X0 + X1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00666\00666-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00666\00666-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00667\00667-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00667\00667-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00668\00668-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00668\00668-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00669\00669-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00669\00669-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00670\00670-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00670\00670-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00671\00671-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00671\00671-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00672\00672-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00672\00672-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00673\00673-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00673\00673-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00674\00674-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00674\00674-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00675\00675-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00675\00675-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00676\00676-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00676\00676-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00677\00677-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00677\00677-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00678\00678-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00678\00678-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00679\00679-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00679\00679-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00680\00680-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00680\00680-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00681\00681-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00681\00681-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00682\00682-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00682\00682-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00683\00683-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00683\00683-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00684\00684-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00684\00684-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00685\00685-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00685\00685-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00686\00686-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00686\00686-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00687\00687-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00687\00687-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00688\00688-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00688\00688-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00689\00689-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00689\00689-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00690\00690-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00690\00690-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00691\00691-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00691\00691-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00692\00692-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00692\00692-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00693\00693-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00693\00693-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00694\00694-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00694\00694-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00695\00695-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00695\00695-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00696\00696-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00696\00696-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00697\00697-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00697\00697-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00698\00698-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00698\00698-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00699\00699-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00699\00699-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00700\00700-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00700\00700-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00701\00701-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00701\00701-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00702\00702-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00702\00702-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00703\00703-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00703\00703-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00704\00704-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00704\00704-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00705\00705-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00705\00705-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00706\00706-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00706\00706-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00707\00707-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00707\00707-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00708\00708-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00708\00708-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00709\00709-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00709\00709-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00710\00710-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00710\00710-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00711\00711-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00711\00711-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00712\00712-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00712\00712-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00713\00713-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00713\00713-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00714\00714-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00714\00714-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00715\00715-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00715\00715-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00716\00716-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00716\00716-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00717\00717-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00717\00717-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00718\00718-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00718\00718-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00719\00719-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00719\00719-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00720\00720-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00720\00720-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00721\00721-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00721\00721-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00722\00722-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00722\00722-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00723\00723-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00723\00723-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00724\00724-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00724\00724-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00725\00725-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00725\00725-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00726\00726-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00726\00726-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00727\00727-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00727\00727-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00728\00728-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00728\00728-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00729\00729-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00729\00729-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00730\00730-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00730\00730-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00731\00731-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00731\00731-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00732\00732-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00732\00732-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00733\00733-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00733\00733-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00734\00734-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00734\00734-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00735\00735-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00735\00735-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00736\00736-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00736\00736-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00737\00737-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00737\00737-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00738\00738-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00738\00738-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00739\00739-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00739\00739-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00740\00740-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00740\00740-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00741\00741-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00741\00741-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00742\00742-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00742\00742-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00743\00743-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00743\00743-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00744\00744-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00744\00744-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00745\00745-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00745\00745-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00746\00746-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00746\00746-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00747\00747-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00747\00747-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00748\00748-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00748\00748-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00749\00749-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00749\00749-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00750\00750-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00750\00750-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00751\00751-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00751\00751-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00752\00752-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00752\00752-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00753\00753-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00753\00753-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00754\00754-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00754\00754-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00755\00755-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00755\00755-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00756\00756-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00756\00756-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00757\00757-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00757\00757-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00758\00758-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00758\00758-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00759\00759-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00759\00759-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00760\00760-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00760\00760-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = -1 * S1 + T + add(X0, X1)' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00761\00761-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00761\00761-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = S1 * add(1, k3) + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00762\00762-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00762\00762-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = subtract(k2, 0.9)' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00763\00763-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00763\00763-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00764\00764-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00764\00764-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00765\00765-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00765\00765-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00766\00766-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00766\00766-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00767\00767-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00767\00767-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00768\00768-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00768\00768-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00769\00769-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00769\00769-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00770\00770-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00770\00770-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00771\00771-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00771\00771-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00772\00772-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00772\00772-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00773\00773-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00773\00773-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00774\00774-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00774\00774-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00775\00775-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00775\00775-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00776\00776-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00776\00776-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00777\00777-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00777\00777-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = k2 + -2.5' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00778\00778-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00778\00778-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = -1 * S1 + T + X0 + X1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00779\00779-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00779\00779-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = -1 * S1 + T + X0 + X1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00780\00780-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00780\00780-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = -1 * S1 + T + X0 + X1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00781\00781-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00781\00781-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00782\00782-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00782\00782-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00783\00783-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00783\00783-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00784\00784-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00784\00784-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00785\00785-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00785\00785-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00786\00786-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00786\00786-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00787\00787-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00787\00787-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00788\00788-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00788\00788-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00789\00789-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00789\00789-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00790\00790-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00790\00790-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00791\00791-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00791\00791-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00792\00792-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00792\00792-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00793\00793-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00793\00793-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00794\00794-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00794\00794-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00795\00795-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00795\00795-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00796\00796-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00796\00796-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00797\00797-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00797\00797-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00798\00798-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00798\00798-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00799\00799-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00799\00799-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00800\00800-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00800\00800-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00801\00801-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00801\00801-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00802\00802-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00802\00802-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00803\00803-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00803\00803-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00804\00804-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00804\00804-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00805\00805-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00805\00805-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00806\00806-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00806\00806-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00807\00807-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00807\00807-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00808\00808-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00808\00808-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00809\00809-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00809\00809-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00810\00810-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00810\00810-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00811\00811-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00811\00811-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00812\00812-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00812\00812-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00813\00813-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00813\00813-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00814\00814-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00814\00814-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00815\00815-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00815\00815-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00816\00816-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00816\00816-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00817\00817-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00817\00817-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00818\00818-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00818\00818-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00819\00819-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00819\00819-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00820\00820-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00820\00820-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00821\00821-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00821\00821-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00822\00822-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00822\00822-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00823\00823-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00823\00823-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00824\00824-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00824\00824-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00825\00825-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00825\00825-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00826\00826-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00826\00826-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00827\00827-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00827\00827-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00828\00828-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00828\00828-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00829\00829-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00829\00829-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00830\00830-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00830\00830-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00831\00831-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00831\00831-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00832\00832-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00832\00832-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00833\00833-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00833\00833-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00834\00834-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00834\00834-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00835\00835-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00835\00835-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00836\00836-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00836\00836-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00837\00837-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00837\00837-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00838\00838-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00838\00838-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00839\00839-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00839\00839-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00840\00840-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00840\00840-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00841\00841-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00841\00841-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00842\00842-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00842\00842-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00843\00843-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00843\00843-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00844\00844-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00844\00844-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = kf + -0.75' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00845\00845-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00845\00845-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00846\00846-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00846\00846-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00847\00847-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00847\00847-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00848\00848-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00848\00848-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00849\00849-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00849\00849-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00850\00850-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00850\00850-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00851\00851-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00851\00851-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00852\00852-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00852\00852-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00853\00853-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00853\00853-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00854\00854-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00854\00854-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00855\00855-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00855\00855-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00856\00856-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00856\00856-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00857\00857-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00857\00857-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00858\00858-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00858\00858-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00859\00859-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00859\00859-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00860\00860-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00860\00860-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00861\00861-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00861\00861-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00862\00862-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00862\00862-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00863\00863-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00863\00863-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00864\00864-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00864\00864-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00865\00865-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00865\00865-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00866\00866-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00866\00866-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00867\00867-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00867\00867-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00868\00868-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00868\00868-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00869\00869-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00869\00869-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00870\00870-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00870\00870-sbml-l3v1.xml)|pass|pass|pass|pass|True| -|[00871\00871-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00871\00871-sbml-l3v1.xml)|pass|pass|pass|pass|True| -|[00872\00872-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00872\00872-sbml-l3v1.xml)|pass|pass|pass|pass|True| -|[00873\00873-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00873\00873-sbml-l3v1.xml)|pass|pass|pass|pass|True| -|[00874\00874-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00874\00874-sbml-l3v1.xml)|pass|pass|pass|pass|True| -|[00875\00875-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00875\00875-sbml-l3v1.xml)|pass|pass|pass|pass|True| -|[00876\00876-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00876\00876-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00877\00877-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00877\00877-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00878\00878-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00878\00878-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00879\00879-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00879\00879-sbml-l3v2.xml)|pass|FAIL|pass|pass|True| -|[00880\00880-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00880\00880-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00881\00881-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00881\00881-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00882\00882-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00882\00882-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00883\00883-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00883\00883-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00884\00884-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00884\00884-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00885\00885-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00885\00885-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00886\00886-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00886\00886-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00887\00887-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00887\00887-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00888\00888-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00888\00888-sbml-l3v2.xml)|pass|FAIL|pass|pass|True| -|[00889\00889-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00889\00889-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00890\00890-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00890\00890-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00891\00891-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00891\00891-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00892\00892-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00892\00892-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00893\00893-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00893\00893-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00894\00894-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00894\00894-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00895\00895-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00895\00895-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00896\00896-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00896\00896-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00897\00897-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00897\00897-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00898\00898-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00898\00898-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00899\00899-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00899\00899-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00900\00900-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00900\00900-sbml-l2v5.xml)|pass|pass|pass|pass|True| -|[00901\00901-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00901\00901-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00902\00902-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00902\00902-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00903\00903-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00903\00903-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00904\00904-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00904\00904-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00905\00905-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00905\00905-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00906\00906-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00906\00906-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00907\00907-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00907\00907-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00908\00908-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00908\00908-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00909\00909-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00909\00909-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00910\00910-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00910\00910-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00911\00911-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00911\00911-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00912\00912-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00912\00912-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00913\00913-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00913\00913-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00914\00914-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00914\00914-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00915\00915-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00915\00915-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00916\00916-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00916\00916-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00917\00917-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00917\00917-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00918\00918-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00918\00918-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00919\00919-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00919\00919-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00920\00920-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00920\00920-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00921\00921-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00921\00921-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00922\00922-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00922\00922-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00923\00923-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00923\00923-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00924\00924-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00924\00924-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00925\00925-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00925\00925-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00926\00926-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00926\00926-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00927\00927-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00927\00927-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00928\00928-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00928\00928-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00929\00929-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00929\00929-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00930\00930-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00930\00930-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00931\00931-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00931\00931-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00932\00932-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00932\00932-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00933\00933-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00933\00933-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00934\00934-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00934\00934-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00935\00935-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00935\00935-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00936\00936-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00936\00936-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00937\00937-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00937\00937-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(x, 0.2)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[00938\00938-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00938\00938-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(x, 0.2)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[00939\00939-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00939\00939-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(x, 0.2)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[00940\00940-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00940\00940-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(x, 0.5)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[00941\00941-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00941\00941-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(x, 0.5)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[00942\00942-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00942\00942-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(x, 0.5)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[00943\00943-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00943\00943-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(x, 0.5)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[00944\00944-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00944\00944-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00945\00945-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00945\00945-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00946\00946-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00946\00946-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00947\00947-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00947\00947-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00948\00948-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00948\00948-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00949\00949-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00949\00949-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00950\00950-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00950\00950-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00951\00951-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00951\00951-sbml-l3v2.xml)|pass|pass|pass|pass|True| -|[00952\00952-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00952\00952-sbml-l3v2.xml)|pass|pass|pass|
    float```'float' object is not callable```
    |True| -|[00953\00953-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00953\00953-sbml-l3v2.xml)|pass|pass|pass|
    float```'float' object is not callable```
    |True| -|[00954\00954-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00954\00954-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00955\00955-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00955\00955-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00956\00956-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00956\00956-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00957\00957-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00957\00957-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00958\00958-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00958\00958-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00959\00959-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00959\00959-sbml-l3v2.xml)|FAIL|FAIL|pass|
    reset```reset```
    |True| -|[00960\00960-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00960\00960-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00961\00961-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00961\00961-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00962\00962-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00962\00962-sbml-l3v2.xml)|pass|pass|pass|
    float```'float' object is not callable```
    |True| -|[00963\00963-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00963\00963-sbml-l3v2.xml)|pass|pass|pass|
    float```'float' object is not callable```
    |True| -|[00964\00964-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00964\00964-sbml-l3v2.xml)|pass|pass|pass|
    float```'float' object is not callable```
    |True| -|[00965\00965-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00965\00965-sbml-l3v2.xml)|pass|pass|pass|
    float```'float' object is not callable```
    |True| -|[00966\00966-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00966\00966-sbml-l3v2.xml)|pass|pass|pass|
    float```'float' object is not callable```
    |True| -|[00967\00967-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00967\00967-sbml-l3v2.xml)|pass|pass|pass|
    float```'float' object is not callable```
    |True| -|[00968\00968-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00968\00968-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00969\00969-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00969\00969-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00970\00970-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00970\00970-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00971\00971-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00971\00971-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00972\00972-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00972\00972-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00973\00973-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00973\00973-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00974\00974-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00974\00974-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00975\00975-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00975\00975-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00976\00976-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00976\00976-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00977\00977-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00977\00977-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00978\00978-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00978\00978-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00979\00979-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00979\00979-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00980\00980-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00980\00980-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00981\00981-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00981\00981-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(x, time / 2)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[00982\00982-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00982\00982-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(x, temp)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[00983\00983-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00983\00983-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = -1 * temp + time / 2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00984\00984-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00984\00984-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(x, temp)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[00985\00985-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00985\00985-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(x, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[00986\00986-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00986\00986-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00987\00987-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00987\00987-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00988\00988-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00988\00988-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00989\00989-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00989\00989-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00990\00990-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00990\00990-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00991\00991-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00991\00991-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00992\00992-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00992\00992-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00993\00993-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00993\00993-sbml-l2v5.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = X - p1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[00994\00994-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00994\00994-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00995\00995-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00995\00995-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00996\00996-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00996\00996-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00997\00997-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00997\00997-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00998\00998-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00998\00998-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[00999\00999-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00999\00999-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01000\01000-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01000\01000-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01001\01001-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01001\01001-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01002\01002-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01002\01002-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01003\01003-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01003\01003-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01004\01004-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01004\01004-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01005\01005-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01005\01005-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01006\01006-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01006\01006-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01007\01007-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01007\01007-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01008\01008-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01008\01008-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01009\01009-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01009\01009-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01010\01010-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01010\01010-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01011\01011-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01011\01011-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01012\01012-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01012\01012-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01013\01013-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01013\01013-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01014\01014-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01014\01014-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01015\01015-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01015\01015-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01016\01016-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01016\01016-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01017\01017-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01017\01017-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01018\01018-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01018\01018-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01019\01019-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01019\01019-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01020\01020-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01020\01020-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01021\01021-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01021\01021-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01022\01022-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01022\01022-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01023\01023-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01023\01023-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01024\01024-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01024\01024-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01025\01025-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01025\01025-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01026\01026-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01026\01026-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01027\01027-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01027\01027-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01028\01028-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01028\01028-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01029\01029-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01029\01029-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01030\01030-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01030\01030-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01031\01031-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01031\01031-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01032\01032-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01032\01032-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01033\01033-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01033\01033-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01034\01034-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01034\01034-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01035\01035-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01035\01035-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01036\01036-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01036\01036-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01037\01037-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01037\01037-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01038\01038-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01038\01038-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01039\01039-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01039\01039-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01040\01040-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01040\01040-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01041\01041-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01041\01041-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01042\01042-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01042\01042-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01043\01043-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01043\01043-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01044\01044-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01044\01044-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = kf + -0.75' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01045\01045-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01045\01045-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01046\01046-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01046\01046-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01047\01047-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01047\01047-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01048\01048-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01048\01048-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01049\01049-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01049\01049-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01050\01050-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01050\01050-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01051\01051-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01051\01051-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01052\01052-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01052\01052-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01053\01053-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01053\01053-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01054\01054-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01054\01054-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01055\01055-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01055\01055-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01056\01056-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01056\01056-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01057\01057-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01057\01057-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01058\01058-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01058\01058-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01059\01059-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01059\01059-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01060\01060-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01060\01060-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01061\01061-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01061\01061-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01062\01062-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01062\01062-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01063\01063-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01063\01063-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01064\01064-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01064\01064-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01065\01065-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01065\01065-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01066\01066-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01066\01066-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01067\01067-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01067\01067-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01068\01068-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01068\01068-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01069\01069-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01069\01069-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01070\01070-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01070\01070-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01071\01071-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01071\01071-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01072\01072-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01072\01072-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01073\01073-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01073\01073-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01074\01074-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01074\01074-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01075\01075-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01075\01075-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01076\01076-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01076\01076-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01077\01077-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01077\01077-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01078\01078-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01078\01078-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01079\01079-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01079\01079-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01080\01080-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01080\01080-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01081\01081-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01081\01081-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01082\01082-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01082\01082-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01083\01083-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01083\01083-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01084\01084-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01084\01084-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01085\01085-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01085\01085-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01086\01086-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01086\01086-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01087\01087-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01087\01087-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01088\01088-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01088\01088-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01089\01089-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01089\01089-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01090\01090-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01090\01090-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01091\01091-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01091\01091-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01092\01092-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01092\01092-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01093\01093-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01093\01093-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01094\01094-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01094\01094-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01095\01095-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01095\01095-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01096\01096-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01096\01096-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01097\01097-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01097\01097-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01098\01098-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01098\01098-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01099\01099-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01099\01099-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01100\01100-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01100\01100-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01101\01101-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01101\01101-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01102\01102-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01102\01102-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01103\01103-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01103\01103-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01104\01104-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01104\01104-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01105\01105-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01105\01105-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01106\01106-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01106\01106-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01107\01107-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01107\01107-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01108\01108-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01108\01108-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = X - p1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01109\01109-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01109\01109-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01110\01110-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01110\01110-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01111\01111-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01111\01111-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01112\01112-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01112\01112-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01113\01113-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01113\01113-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01114\01114-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01114\01114-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01115\01115-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01115\01115-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01116\01116-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01116\01116-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01117\01117-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01117\01117-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01118\01118-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01118\01118-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01119\01119-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01119\01119-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01120\01120-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01120\01120-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01121\01121-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01121\01121-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01122\01122-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01122\01122-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01123\01123-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01123\01123-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01124\01124-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01124\01124-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01125\01125-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01125\01125-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01126\01126-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01126\01126-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01127\01127-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01127\01127-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01128\01128-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01128\01128-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01129\01129-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01129\01129-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01130\01130-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01130\01130-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01131\01131-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01131\01131-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01132\01132-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01132\01132-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01133\01133-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01133\01133-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01134\01134-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01134\01134-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01135\01135-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01135\01135-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01136\01136-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01136\01136-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01137\01137-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01137\01137-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01138\01138-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01138\01138-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01139\01139-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01139\01139-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01140\01140-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01140\01140-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01141\01141-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01141\01141-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01142\01142-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01142\01142-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = t4 - delay(t3, timeconv * (time / timeconv / 2))' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01143\01143-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01143\01143-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01144\01144-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01144\01144-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01145\01145-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01145\01145-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01146\01146-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01146\01146-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01147\01147-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01147\01147-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01148\01148-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01148\01148-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01149\01149-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01149\01149-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01150\01150-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01150\01150-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01151\01151-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01151\01151-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01152\01152-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01152\01152-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01153\01153-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01153\01153-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01154\01154-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01154\01154-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01155\01155-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01155\01155-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01156\01156-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01156\01156-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01157\01157-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01157\01157-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01158\01158-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01158\01158-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01159\01159-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01159\01159-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01160\01160-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01160\01160-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01161\01161-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01161\01161-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01162\01162-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01162\01162-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01163\01163-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01163\01163-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01164\01164-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01164\01164-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01165\01165-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01165\01165-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01166\01166-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01166\01166-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01167\01167-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01167\01167-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01168\01168-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01168\01168-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01169\01169-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01169\01169-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01170\01170-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01170\01170-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01171\01171-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01171\01171-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01172\01172-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01172\01172-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01173\01173-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01173\01173-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(t1, timeconv * 3)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01174\01174-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01174\01174-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = t4 - delay(t3, timeconv * (time / timeconv / 2))' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01175\01175-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01175\01175-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01176\01176-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01176\01176-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(t5, timeconv * 0.2)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01177\01177-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01177\01177-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01178\01178-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01178\01178-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01179\01179-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01179\01179-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01180\01180-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01180\01180-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01181\01181-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01181\01181-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01182\01182-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01182\01182-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01183\01183-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01183\01183-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01184\01184-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01184\01184-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01185\01185-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01185\01185-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01186\01186-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01186\01186-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01187\01187-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01187\01187-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01188\01188-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01188\01188-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01189\01189-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01189\01189-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01190\01190-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01190\01190-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01191\01191-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01191\01191-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01192\01192-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01192\01192-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01193\01193-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01193\01193-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01194\01194-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01194\01194-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01195\01195-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01195\01195-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01196\01196-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01196\01196-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01197\01197-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01197\01197-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01198\01198-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01198\01198-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01199\01199-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01199\01199-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01200\01200-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01200\01200-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01201\01201-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01201\01201-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01202\01202-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01202\01202-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01203\01203-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01203\01203-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01204\01204-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01204\01204-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01205\01205-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01205\01205-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01206\01206-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01206\01206-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01207\01207-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01207\01207-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01208\01208-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01208\01208-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01209\01209-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01209\01209-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01210\01210-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01210\01210-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01211\01211-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01211\01211-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01212\01212-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01212\01212-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01213\01213-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01213\01213-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01214\01214-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01214\01214-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01215\01215-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01215\01215-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01216\01216-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01216\01216-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01217\01217-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01217\01217-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01218\01218-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01218\01218-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01219\01219-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01219\01219-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01220\01220-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01220\01220-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01221\01221-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01221\01221-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01222\01222-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01222\01222-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01223\01223-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01223\01223-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01224\01224-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01224\01224-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01225\01225-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01225\01225-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01226\01226-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01226\01226-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01227\01227-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01227\01227-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01228\01228-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01228\01228-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01229\01229-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01229\01229-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01230\01230-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01230\01230-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01231\01231-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01231\01231-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01232\01232-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01232\01232-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01233\01233-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01233\01233-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01234\01234-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01234\01234-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01235\01235-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01235\01235-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01236\01236-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01236\01236-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01237\01237-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01237\01237-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01238\01238-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01238\01238-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01239\01239-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01239\01239-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01240\01240-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01240\01240-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01241\01241-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01241\01241-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01242\01242-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01242\01242-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01243\01243-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01243\01243-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01244\01244-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01244\01244-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01245\01245-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01245\01245-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01246\01246-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01246\01246-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01247\01247-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01247\01247-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01248\01248-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01248\01248-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01249\01249-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01249\01249-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01250\01250-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01250\01250-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01251\01251-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01251\01251-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01252\01252-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01252\01252-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01253\01253-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01253\01253-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01254\01254-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01254\01254-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01255\01255-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01255\01255-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01256\01256-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01256\01256-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01257\01257-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01257\01257-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01258\01258-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01258\01258-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01259\01259-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01259\01259-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01260\01260-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01260\01260-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01261\01261-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01261\01261-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01262\01262-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01262\01262-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01263\01263-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01263\01263-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01264\01264-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01264\01264-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01265\01265-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01265\01265-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01266\01266-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01266\01266-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01267\01267-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01267\01267-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01268\01268-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01268\01268-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01269\01269-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01269\01269-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01270\01270-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01270\01270-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01271\01271-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01271\01271-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01272\01272-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01272\01272-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01273\01273-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01273\01273-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01274\01274-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01274\01274-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01275\01275-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01275\01275-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01276\01276-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01276\01276-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01277\01277-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01277\01277-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01278\01278-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01278\01278-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01279\01279-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01279\01279-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01280\01280-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01280\01280-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01281\01281-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01281\01281-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01282\01282-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01282\01282-sbml-l3v2.xml)|pass|FAIL|pass|
    reset```reset```
    |True| -|[01283\01283-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01283\01283-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01284\01284-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01284\01284-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01285\01285-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01285\01285-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01286\01286-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01286\01286-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01287\01287-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01287\01287-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01288\01288-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01288\01288-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01289\01289-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01289\01289-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01290\01290-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01290\01290-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01291\01291-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01291\01291-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01292\01292-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01292\01292-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = p1 - true' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01293\01293-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01293\01293-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01294\01294-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01294\01294-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01295\01295-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01295\01295-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01296\01296-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01296\01296-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01297\01297-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01297\01297-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01298\01298-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01298\01298-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01299\01299-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01299\01299-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01300\01300-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01300\01300-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01301\01301-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01301\01301-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01302\01302-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01302\01302-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01303\01303-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01303\01303-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01304\01304-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01304\01304-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01305\01305-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01305\01305-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01306\01306-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01306\01306-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01307\01307-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01307\01307-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01308\01308-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01308\01308-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01309\01309-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01309\01309-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01310\01310-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01310\01310-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01311\01311-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01311\01311-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01312\01312-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01312\01312-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01313\01313-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01313\01313-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01314\01314-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01314\01314-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01315\01315-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01315\01315-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01316\01316-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01316\01316-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01317\01317-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01317\01317-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01318\01318-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01318\01318-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(p2, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01319\01319-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01319\01319-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(p2, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01320\01320-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01320\01320-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01321\01321-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01321\01321-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01322\01322-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01322\01322-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01323\01323-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01323\01323-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01324\01324-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01324\01324-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01325\01325-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01325\01325-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01326\01326-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01326\01326-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01327\01327-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01327\01327-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01328\01328-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01328\01328-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01329\01329-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01329\01329-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01330\01330-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01330\01330-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01331\01331-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01331\01331-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01332\01332-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01332\01332-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01333\01333-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01333\01333-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01334\01334-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01334\01334-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01335\01335-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01335\01335-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01336\01336-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01336\01336-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01337\01337-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01337\01337-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01338\01338-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01338\01338-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01339\01339-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01339\01339-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01340\01340-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01340\01340-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01341\01341-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01341\01341-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01342\01342-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01342\01342-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01343\01343-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01343\01343-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01344\01344-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01344\01344-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01345\01345-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01345\01345-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01346\01346-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01346\01346-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01347\01347-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01347\01347-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01348\01348-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01348\01348-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01349\01349-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01349\01349-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01350\01350-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01350\01350-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = A__x - J1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01351\01351-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01351\01351-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01352\01352-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01352\01352-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01353\01353-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01353\01353-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01354\01354-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01354\01354-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01355\01355-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01355\01355-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01356\01356-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01356\01356-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01357\01357-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01357\01357-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01358\01358-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01358\01358-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01359\01359-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01359\01359-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = A__x - J1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01360\01360-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01360\01360-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01361\01361-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01361\01361-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01362\01362-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01362\01362-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01363\01363-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01363\01363-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01364\01364-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01364\01364-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01365\01365-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01365\01365-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01366\01366-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01366\01366-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01367\01367-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01367\01367-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01368\01368-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01368\01368-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = A__x - J1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01369\01369-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01369\01369-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01370\01370-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01370\01370-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01371\01371-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01371\01371-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01372\01372-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01372\01372-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01373\01373-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01373\01373-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01374\01374-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01374\01374-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01375\01375-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01375\01375-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01376\01376-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01376\01376-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01377\01377-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01377\01377-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = A__x - J1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01378\01378-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01378\01378-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01379\01379-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01379\01379-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01380\01380-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01380\01380-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01381\01381-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01381\01381-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01382\01382-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01382\01382-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01383\01383-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01383\01383-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01384\01384-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01384\01384-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01385\01385-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01385\01385-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01386\01386-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01386\01386-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = A__x - J1_sr' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01387\01387-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01387\01387-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01388\01388-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01388\01388-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01389\01389-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01389\01389-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01390\01390-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01390\01390-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01391\01391-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01391\01391-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01392\01392-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01392\01392-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01393\01393-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01393\01393-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01394\01394-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01394\01394-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01395\01395-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01395\01395-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01396\01396-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01396\01396-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01397\01397-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01397\01397-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01398\01398-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01398\01398-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01399\01399-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01399\01399-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01400\01400-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01400\01400-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(rateOf(S1), 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01401\01401-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01401\01401-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(rateOf(S1), 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01402\01402-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01402\01402-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01403\01403-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01403\01403-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(rateOf(S1), 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01404\01404-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01404\01404-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01405\01405-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01405\01405-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01406\01406-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01406\01406-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(rateOf(S1), 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01407\01407-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01407\01407-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01408\01408-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01408\01408-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01409\01409-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01409\01409-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(rateOf(S1), 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01410\01410-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01410\01410-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01411\01411-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01411\01411-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(addtwo(S1, S2), 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01412\01412-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01412\01412-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(addtwo(S1, S2), 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01413\01413-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01413\01413-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(S1, addtwo(0.5, 0.5))' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01414\01414-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01414\01414-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(P1, k)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01415\01415-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01415\01415-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(P1, k)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01416\01416-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01416\01416-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01417\01417-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01417\01417-sbml-l3v2.xml)|pass|FAIL|pass|
    delay```Unable to support delay differential equations. The function 'delay(S1, S1_stoich)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01418\01418-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01418\01418-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(S1_stoich, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01419\01419-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01419\01419-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(S1_stoich, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01420\01420-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01420\01420-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01421\01421-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01421\01421-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01422\01422-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01422\01422-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01423\01423-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01423\01423-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01424\01424-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01424\01424-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01425\01425-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01425\01425-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01426\01426-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01426\01426-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01427\01427-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01427\01427-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01428\01428-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01428\01428-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01429\01429-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01429\01429-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01430\01430-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01430\01430-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01431\01431-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01431\01431-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01432\01432-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01432\01432-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01433\01433-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01433\01433-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01434\01434-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01434\01434-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01435\01435-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01435\01435-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01436\01436-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01436\01436-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01437\01437-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01437\01437-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01438\01438-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01438\01438-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01439\01439-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01439\01439-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01440\01440-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01440\01440-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01441\01441-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01441\01441-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01442\01442-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01442\01442-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01443\01443-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01443\01443-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01444\01444-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01444\01444-sbml-l3v2.xml)|pass|pass|pass|
    stochiometry```Mutable stochiometry for species which appear multiple times in a single reaction is not currently supported, species reference id: A1_sr, at ?storeSymbolValue@ModelDataStoreSymbolResolver@rrllvm@@UEAAPEAVValue@llvm@@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@PEAV34@@Z```
    |True| -|[01445\01445-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01445\01445-sbml-l3v2.xml)|pass|pass|pass|
    stochiometry```Mutable stochiometry for species which appear multiple times in a single reaction is not currently supported, species reference id: A1_sr, at ?storeSymbolValue@ModelDataStoreSymbolResolver@rrllvm@@UEAAPEAVValue@llvm@@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@PEAV34@@Z```
    |True| -|[01446\01446-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01446\01446-sbml-l3v2.xml)|pass|pass|pass|
    stochiometry```Mutable stochiometry for species which appear multiple times in a single reaction is not currently supported, species reference id: A1_sr, at ?storeSymbolValue@ModelDataStoreSymbolResolver@rrllvm@@UEAAPEAVValue@llvm@@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@PEAV34@@Z```
    |True| -|[01447\01447-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01447\01447-sbml-l3v2.xml)|pass|pass|pass|
    stochiometry```Mutable stochiometry for species which appear multiple times in a single reaction is not currently supported, species reference id: A_sr1, at ?storeSymbolValue@ModelDataStoreSymbolResolver@rrllvm@@UEAAPEAVValue@llvm@@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@PEAV34@@Z```
    |True| -|[01448\01448-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01448\01448-sbml-l3v2.xml)|pass|pass|pass|
    stochiometry```Mutable stochiometry for species which appear multiple times in a single reaction is not currently supported, species reference id: A_sr1, at ?storeSymbolValue@ModelDataStoreSymbolResolver@rrllvm@@UEAAPEAVValue@llvm@@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@PEAV34@@Z```
    |True| -|[01449\01449-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01449\01449-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01450\01450-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01450\01450-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01451\01451-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01451\01451-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01452\01452-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01452\01452-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01453\01453-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01453\01453-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01454\01454-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01454\01454-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(S1, 0.1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01455\01455-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01455\01455-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01456\01456-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01456\01456-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01457\01457-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01457\01457-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01458\01458-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01458\01458-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01459\01459-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01459\01459-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01460\01460-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01460\01460-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01461\01461-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01461\01461-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01462\01462-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01462\01462-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01463\01463-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01463\01463-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01464\01464-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01464\01464-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01465\01465-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01465\01465-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01466\01466-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01466\01466-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01467\01467-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01467\01467-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01468\01468-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01468\01468-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01469\01469-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01469\01469-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01470\01470-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01470\01470-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01471\01471-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01471\01471-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01472\01472-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01472\01472-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01473\01473-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01473\01473-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01474\01474-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01474\01474-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01475\01475-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01475\01475-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01476\01476-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01476\01476-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01477\01477-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01477\01477-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01478\01478-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01478\01478-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01479\01479-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01479\01479-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = avogadro / 1e23 - P1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01480\01480-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01480\01480-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01481\01481-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01481\01481-sbml-l2v5.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01482\01482-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01482\01482-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = rateOf(S1) - P1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01483\01483-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01483\01483-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = rateOf(S1) - P1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01484\01484-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01484\01484-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = P1 - S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01485\01485-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01485\01485-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01486\01486-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01486\01486-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01487\01487-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01487\01487-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01488\01488-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01488\01488-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01489\01489-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01489\01489-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01490\01490-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01490\01490-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01491\01491-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01491\01491-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01492\01492-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01492\01492-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01493\01493-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01493\01493-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01494\01494-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01494\01494-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01495\01495-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01495\01495-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01496\01496-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01496\01496-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01497\01497-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01497\01497-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01498\01498-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01498\01498-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01499\01499-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01499\01499-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = P0 - S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01500\01500-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01500\01500-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = P0 - S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01501\01501-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01501\01501-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = P0 - S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01502\01502-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01502\01502-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = P2 - abs(-1)' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01503\01503-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01503\01503-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = P1 - plus()' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01504\01504-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01504\01504-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01505\01505-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01505\01505-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01506\01506-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01506\01506-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01507\01507-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01507\01507-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01508\01508-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01508\01508-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01509\01509-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01509\01509-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01510\01510-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01510\01510-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01511\01511-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01511\01511-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01512\01512-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01512\01512-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01513\01513-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01513\01513-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01514\01514-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01514\01514-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01515\01515-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01515\01515-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01516\01516-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01516\01516-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01517\01517-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01517\01517-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01518\01518-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01518\01518-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01519\01519-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01519\01519-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01520\01520-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01520\01520-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01521\01521-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01521\01521-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01522\01522-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01522\01522-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01523\01523-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01523\01523-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01524\01524-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01524\01524-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01525\01525-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01525\01525-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01526\01526-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01526\01526-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01527\01527-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01527\01527-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01528\01528-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01528\01528-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01529\01529-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01529\01529-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01530\01530-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01530\01530-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01531\01531-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01531\01531-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01532\01532-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01532\01532-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01533\01533-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01533\01533-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01534\01534-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01534\01534-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01535\01535-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01535\01535-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01536\01536-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01536\01536-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01537\01537-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01537\01537-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01538\01538-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01538\01538-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01539\01539-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01539\01539-sbml-l3v1.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(S1, 1.5)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01540\01540-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01540\01540-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01541\01541-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01541\01541-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01542\01542-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01542\01542-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01543\01543-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01543\01543-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01544\01544-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01544\01544-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01545\01545-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01545\01545-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01546\01546-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01546\01546-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01547\01547-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01547\01547-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01548\01548-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01548\01548-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01549\01549-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01549\01549-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01550\01550-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01550\01550-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01551\01551-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01551\01551-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01552\01552-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01552\01552-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01553\01553-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01553\01553-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01554\01554-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01554\01554-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01555\01555-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01555\01555-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01556\01556-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01556\01556-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01557\01557-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01557\01557-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01558\01558-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01558\01558-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01559\01559-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01559\01559-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01560\01560-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01560\01560-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01561\01561-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01561\01561-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01562\01562-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01562\01562-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01563\01563-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01563\01563-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01564\01564-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01564\01564-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01565\01565-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01565\01565-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01566\01566-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01566\01566-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01567\01567-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01567\01567-sbml-l3v1.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = k + 3' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01568\01568-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01568\01568-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01569\01569-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01569\01569-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01570\01570-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01570\01570-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01571\01571-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01571\01571-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01572\01572-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01572\01572-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01573\01573-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01573\01573-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01574\01574-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01574\01574-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01575\01575-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01575\01575-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = k1 - k2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01576\01576-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01576\01576-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = k1 - k2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01577\01577-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01577\01577-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = 10 - k1 - k2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01578\01578-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01578\01578-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = 10 - k1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01579\01579-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01579\01579-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = k1 - k2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01580\01580-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01580\01580-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01581\01581-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01581\01581-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01582\01582-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01582\01582-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01583\01583-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01583\01583-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01584\01584-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01584\01584-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01585\01585-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01585\01585-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01586\01586-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01586\01586-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01587\01587-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01587\01587-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01588\01588-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01588\01588-sbml-l3v2.xml)|pass|pass|pass|
    float```'float' object is not callable```
    |True| -|[01589\01589-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01589\01589-sbml-l3v2.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = Q + R - S' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01590\01590-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01590\01590-sbml-l3v2.xml)|pass|pass|pass|
    float```'float' object is not callable```
    |True| -|[01591\01591-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01591\01591-sbml-l3v2.xml)|pass|pass|pass|
    float```'float' object is not callable```
    |True| -|[01592\01592-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01592\01592-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(reset, 0.005)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01593\01593-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01593\01593-sbml-l3v2.xml)|pass|pass|pass|
    delay```Unable to support delay differential equations. The function 'delay(Q, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z```
    |True| -|[01594\01594-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01594\01594-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01595\01595-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01595\01595-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01596\01596-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01596\01596-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01597\01597-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01597\01597-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01598\01598-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01598\01598-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01599\01599-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01599\01599-sbml-l3v2.xml)|pass|pass|pass|
    float```'float' object is not callable```
    |True| -|[01600\01600-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01600\01600-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01601\01601-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01601\01601-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01602\01602-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01602\01602-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01603\01603-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01603\01603-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01604\01604-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01604\01604-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01605\01605-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01605\01605-sbml-l3v2.xml)|pass|pass|pass|
    float```'float' object is not callable```
    |True| -|[01606\01606-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01606\01606-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01607\01607-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01607\01607-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01608\01608-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01608\01608-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01609\01609-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01609\01609-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01610\01610-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01610\01610-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01611\01611-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01611\01611-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01612\01612-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01612\01612-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01613\01613-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01613\01613-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01614\01614-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01614\01614-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01615\01615-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01615\01615-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01616\01616-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01616\01616-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01617\01617-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01617\01617-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01618\01618-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01618\01618-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01619\01619-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01619\01619-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01620\01620-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01620\01620-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01621\01621-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01621\01621-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01622\01622-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01622\01622-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01623\01623-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01623\01623-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01624\01624-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01624\01624-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01625\01625-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01625\01625-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01626\01626-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01626\01626-sbml-l3v2.xml)|pass|pass|pass|
    stochiometry```Mutable stochiometry for species which appear multiple times in a single reaction is not currently supported, species reference id: Q, at ?loadSymbolValue@ModelDataLoadSymbolResolver@rrllvm@@UEAAPEAVValue@llvm@@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@AEBV?$ArrayRef@PEAVValue@llvm@@@4@@Z```
    |True| -|[01627\01627-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01627\01627-sbml-l3v2.xml)|pass|pass|pass|
    float```'float' object is not callable```
    |True| -|[01628\01628-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01628\01628-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01629\01629-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01629\01629-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01630\01630-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01630\01630-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01631\01631-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01631\01631-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01632\01632-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01632\01632-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01633\01633-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01633\01633-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01634\01634-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01634\01634-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01635\01635-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01635\01635-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01636\01636-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01636\01636-sbml-l2v5.xml)|pass|pass|pass|
    SpeciesRef```S1_stoich is not a named SpeciesReference, at ?getNamedSpeciesReferenceInfo@LLVMModelDataSymbols@rrllvm@@QEAAAEBUSpeciesReferenceInfo@12@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@@Z```
    |True| -|[01637\01637-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01637\01637-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01638\01638-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01638\01638-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01639\01639-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01639\01639-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01640\01640-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01640\01640-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01641\01641-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01641\01641-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01642\01642-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01642\01642-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01643\01643-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01643\01643-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01644\01644-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01644\01644-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01645\01645-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01645\01645-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01646\01646-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01646\01646-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01647\01647-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01647\01647-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01648\01648-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01648\01648-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01649\01649-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01649\01649-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01650\01650-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01650\01650-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01651\01651-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01651\01651-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01652\01652-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01652\01652-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01653\01653-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01653\01653-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01654\01654-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01654\01654-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01655\01655-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01655\01655-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01656\01656-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01656\01656-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01657\01657-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01657\01657-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01658\01658-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01658\01658-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01659\01659-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01659\01659-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01660\01660-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01660\01660-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01661\01661-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01661\01661-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01662\01662-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01662\01662-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01663\01663-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01663\01663-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01664\01664-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01664\01664-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01665\01665-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01665\01665-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01666\01666-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01666\01666-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01667\01667-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01667\01667-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01668\01668-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01668\01668-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01669\01669-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01669\01669-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01670\01670-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01670\01670-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01671\01671-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01671\01671-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01672\01672-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01672\01672-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01673\01673-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01673\01673-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01674\01674-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01674\01674-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01675\01675-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01675\01675-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01676\01676-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01676\01676-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01677\01677-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01677\01677-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01678\01678-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01678\01678-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01679\01679-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01679\01679-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01680\01680-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01680\01680-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01681\01681-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01681\01681-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01682\01682-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01682\01682-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01683\01683-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01683\01683-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01684\01684-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01684\01684-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01685\01685-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01685\01685-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01686\01686-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01686\01686-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01687\01687-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01687\01687-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01688\01688-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01688\01688-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01689\01689-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01689\01689-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01690\01690-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01690\01690-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01691\01691-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01691\01691-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01692\01692-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01692\01692-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01693\01693-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01693\01693-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01694\01694-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01694\01694-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01695\01695-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01695\01695-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01696\01696-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01696\01696-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01697\01697-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01697\01697-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01698\01698-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01698\01698-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01699\01699-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01699\01699-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01700\01700-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01700\01700-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01701\01701-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01701\01701-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01702\01702-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01702\01702-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01703\01703-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01703\01703-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01704\01704-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01704\01704-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01705\01705-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01705\01705-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01706\01706-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01706\01706-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01707\01707-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01707\01707-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01708\01708-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01708\01708-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01709\01709-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01709\01709-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01710\01710-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01710\01710-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01711\01711-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01711\01711-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01712\01712-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01712\01712-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01713\01713-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01713\01713-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01714\01714-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01714\01714-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01715\01715-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01715\01715-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01716\01716-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01716\01716-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01717\01717-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01717\01717-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01718\01718-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01718\01718-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01719\01719-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01719\01719-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01720\01720-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01720\01720-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01721\01721-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01721\01721-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01722\01722-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01722\01722-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01723\01723-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01723\01723-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01724\01724-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01724\01724-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01725\01725-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01725\01725-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01726\01726-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01726\01726-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01727\01727-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01727\01727-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01728\01728-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01728\01728-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01729\01729-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01729\01729-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01730\01730-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01730\01730-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01731\01731-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01731\01731-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01732\01732-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01732\01732-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01733\01733-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01733\01733-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01734\01734-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01734\01734-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01735\01735-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01735\01735-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01736\01736-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01736\01736-sbml-l3v2.xml)|pass|pass|pass|
    SpeciesRef```S4_stoich is not a named SpeciesReference, at ?getNamedSpeciesReferenceInfo@LLVMModelDataSymbols@rrllvm@@QEAAAEBUSpeciesReferenceInfo@12@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@@Z```
    |True| -|[01737\01737-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01737\01737-sbml-l3v2.xml)|pass|pass|pass|
    SpeciesRef```S4_stoich is not a named SpeciesReference, at ?getNamedSpeciesReferenceInfo@LLVMModelDataSymbols@rrllvm@@QEAAAEBUSpeciesReferenceInfo@12@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@@Z```
    |True| -|[01738\01738-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01738\01738-sbml-l3v2.xml)|pass|pass|pass|
    SpeciesRef```S4_stoich is not a named SpeciesReference, at ?getNamedSpeciesReferenceInfo@LLVMModelDataSymbols@rrllvm@@QEAAAEBUSpeciesReferenceInfo@12@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@@Z```
    |True| -|[01739\01739-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01739\01739-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01740\01740-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01740\01740-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01741\01741-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01741\01741-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01742\01742-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01742\01742-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01743\01743-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01743\01743-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01744\01744-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01744\01744-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01745\01745-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01745\01745-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01746\01746-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01746\01746-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01747\01747-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01747\01747-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01748\01748-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01748\01748-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01749\01749-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01749\01749-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01750\01750-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01750\01750-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01751\01751-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01751\01751-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01752\01752-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01752\01752-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01753\01753-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01753\01753-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01754\01754-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01754\01754-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01755\01755-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01755\01755-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01756\01756-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01756\01756-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01757\01757-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01757\01757-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01758\01758-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01758\01758-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01759\01759-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01759\01759-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01760\01760-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01760\01760-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01761\01761-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01761\01761-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01762\01762-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01762\01762-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01763\01763-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01763\01763-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01764\01764-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01764\01764-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01765\01765-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01765\01765-sbml-l3v1.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01766\01766-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01766\01766-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01767\01767-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01767\01767-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01768\01768-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01768\01768-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01769\01769-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01769\01769-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01770\01770-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01770\01770-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01771\01771-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01771\01771-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01772\01772-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01772\01772-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01773\01773-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01773\01773-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01774\01774-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01774\01774-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01775\01775-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01775\01775-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01776\01776-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01776\01776-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01777\01777-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01777\01777-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01778\01778-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01778\01778-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01779\01779-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01779\01779-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01780\01780-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01780\01780-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01781\01781-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01781\01781-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01782\01782-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01782\01782-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01783\01783-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01783\01783-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01784\01784-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01784\01784-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01785\01785-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01785\01785-sbml-l2v5.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = C2 - C1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01786\01786-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01786\01786-sbml-l2v5.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = C2 - C1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01787\01787-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01787\01787-sbml-l2v5.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = S2 - S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01788\01788-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01788\01788-sbml-l2v5.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = S2 - S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01789\01789-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01789\01789-sbml-l2v5.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = P2 - P1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01790\01790-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01790\01790-sbml-l2v5.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = P2 - P1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01791\01791-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01791\01791-sbml-l2v5.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = P2 - C1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01792\01792-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01792\01792-sbml-l2v5.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = P2 - C1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01793\01793-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01793\01793-sbml-l2v5.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = 1 * C1 - S2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01794\01794-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01794\01794-sbml-l2v5.xml)|pass|pass|pass|
    algebraic```Unable to support algebraic rules. The formula '0 = P1 - S2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z```
    |True| -|[01795\01795-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01795\01795-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01796\01796-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01796\01796-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01797\01797-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01797\01797-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01798\01798-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01798\01798-sbml-l2v5.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01799\01799-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01799\01799-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01800\01800-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01800\01800-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01801\01801-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01801\01801-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01802\01802-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01802\01802-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01803\01803-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01803\01803-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01804\01804-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01804\01804-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01805\01805-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01805\01805-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01806\01806-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01806\01806-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01807\01807-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01807\01807-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01808\01808-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01808\01808-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01809\01809-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01809\01809-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01810\01810-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01810\01810-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01811\01811-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01811\01811-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01812\01812-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01812\01812-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01813\01813-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01813\01813-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01814\01814-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01814\01814-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01815\01815-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01815\01815-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01816\01816-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01816\01816-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01817\01817-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01817\01817-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01818\01818-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01818\01818-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01819\01819-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01819\01819-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01820\01820-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01820\01820-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| -|[01821\01821-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01821\01821-sbml-l3v2.xml)|pass|pass|pass|
    reset```reset```
    |True| +SBML Test Suite validation and simulation results using Tellurium installed natively and Tellurium and COPASI run remotely through BioSimulators. +|case|valid-sbml|valid-sbml-units|valid-sedml|tellurium|xmlns-sbml-missing|tellurium-remote|copasi-remote| +|---|---|---|---|---|---|---|---| +|n=1821|n_fail=1|n_fail=5|n_fail=0|
    pass=1576 FAIL=245n_algebraic=124 n_delay=51 n_
    skippedCase is skipped because it leads to a float error when trying to run it in tellurium natively, which leads to reset errors in subsequent cases that would otherwise pass.
    =14 n_other=46 n_stochiometry=6 n_SpeciesRef=4
    |n=1821|pass=1543|pass=1688| +|[00001-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00001-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d1a813e750b90a426019d/download)
    [Logs](https://api.biosimulations.org/logs/677d1a813e750b90a426019d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d1a813e750b90a426019d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d1a7ef8016f90e7cb63cd/download)
    [Logs](https://api.biosimulations.org/logs/677d1a7ef8016f90e7cb63cd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d1a7ef8016f90e7cb63cd)

    HTTP response: 201| +|[00002-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00002-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d1a8567468f9f3fc57e1b/download)
    [Logs](https://api.biosimulations.org/logs/677d1a8567468f9f3fc57e1b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d1a8567468f9f3fc57e1b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d1a83f8016f90e7cb63d1/download)
    [Logs](https://api.biosimulations.org/logs/677d1a83f8016f90e7cb63d1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d1a83f8016f90e7cb63d1)

    HTTP response: 201| +|[00003-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00003-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d1a8b3e750b90a42601a5/download)
    [Logs](https://api.biosimulations.org/logs/677d1a8b3e750b90a42601a5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d1a8b3e750b90a42601a5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d1a893e750b90a42601a1/download)
    [Logs](https://api.biosimulations.org/logs/677d1a893e750b90a42601a1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d1a893e750b90a42601a1)

    HTTP response: 201| +|[00004-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00004-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d1a9067468f9f3fc57e2a/download)
    [Logs](https://api.biosimulations.org/logs/677d1a9067468f9f3fc57e2a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d1a9067468f9f3fc57e2a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d1a8e67468f9f3fc57e25/download)
    [Logs](https://api.biosimulations.org/logs/677d1a8e67468f9f3fc57e25?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d1a8e67468f9f3fc57e25)

    HTTP response: 201| +|[00005-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00005-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d1a9467468f9f3fc57e36/download)
    [Logs](https://api.biosimulations.org/logs/677d1a9467468f9f3fc57e36?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d1a9467468f9f3fc57e36)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d1a9267468f9f3fc57e2d/download)
    [Logs](https://api.biosimulations.org/logs/677d1a9267468f9f3fc57e2d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d1a9267468f9f3fc57e2d)

    HTTP response: 201| +|[00006-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00006-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d1d943e750b90a4260225/download)
    [Logs](https://api.biosimulations.org/logs/677d1d943e750b90a4260225?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d1d943e750b90a4260225)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d1d923e750b90a4260222/download)
    [Logs](https://api.biosimulations.org/logs/677d1d923e750b90a4260222?includeOutput=true)
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    HTTP response: 201| +|[00007-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00007-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d1db03e750b90a426023f/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d1dae67468f9f3fc57ed8/download)
    [Logs](https://api.biosimulations.org/logs/677d1dae67468f9f3fc57ed8?includeOutput=true)
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    HTTP response: 201| +|[00008-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00008-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d1db467468f9f3fc57edc/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d1db33e750b90a4260243/download)
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    HTTP response: 201| +|[00009-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00009-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d1dba67468f9f3fc57ee2/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d1db73e750b90a4260246/download)
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    HTTP response: 201| +|[00010-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00010-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d1dbef8016f90e7cb64a0/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d1dbc67468f9f3fc57ee7/download)
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    HTTP response: 201| +|[00011-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00011-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d1dc267468f9f3fc57ef7/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d1dc0f8016f90e7cb64a5/download)
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    HTTP response: 201| +|[00012-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00012-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d1dc667468f9f3fc57f0a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d1dc43e750b90a426025a/download)
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    HTTP response: 201| +|[00013-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00013-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d1dca67468f9f3fc57f15/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d1dc83e750b90a4260279/download)
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    HTTP response: 201| +|[00014-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00014-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d1dce67468f9f3fc57f2b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d1dccf8016f90e7cb64dc/download)
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    HTTP response: 201| +|[00015-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00015-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d1de3f8016f90e7cb6543/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d1dd13e750b90a42602a4/download)
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    HTTP response: 201| +|[00016-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00016-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d1de8f8016f90e7cb654a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d1de667468f9f3fc57f76/download)
    [Logs](https://api.biosimulations.org/logs/677d1de667468f9f3fc57f76?includeOutput=true)
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    HTTP response: 201| +|[00017-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00017-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d1dec67468f9f3fc57f7d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d1dea67468f9f3fc57f7a/download)
    [Logs](https://api.biosimulations.org/logs/677d1dea67468f9f3fc57f7a?includeOutput=true)
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    HTTP response: 201| +|[00018-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00018-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d1df767468f9f3fc57f8a/download)
    [Logs](https://api.biosimulations.org/logs/677d1df767468f9f3fc57f8a?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d1deff8016f90e7cb6550/download)
    [Logs](https://api.biosimulations.org/logs/677d1deff8016f90e7cb6550?includeOutput=true)
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    HTTP response: 201| +|[00019-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00019-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d1dff3e750b90a4260321/download)
    [Logs](https://api.biosimulations.org/logs/677d1dff3e750b90a4260321?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d1dfc67468f9f3fc57fa7/download)
    [Logs](https://api.biosimulations.org/logs/677d1dfc67468f9f3fc57fa7?includeOutput=true)
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    HTTP response: 201| +|[00020-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00020-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677e71cef8016f90e7cc0698/download)
    [Logs](https://api.biosimulations.org/logs/677e71cef8016f90e7cc0698?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677e71cc3e750b90a426a299/download)
    [Logs](https://api.biosimulations.org/logs/677e71cc3e750b90a426a299?includeOutput=true)
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    HTTP response: 201| +|[00021-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00021-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3062f8016f90e7cb660b/download)
    [Logs](https://api.biosimulations.org/logs/677d3062f8016f90e7cb660b?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3058f8016f90e7cb6607/download)
    [Logs](https://api.biosimulations.org/logs/677d3058f8016f90e7cb6607?includeOutput=true)
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    HTTP response: 201| +|[00022-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00022-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d306c67468f9f3fc5803b/download)
    [Logs](https://api.biosimulations.org/logs/677d306c67468f9f3fc5803b?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d306767468f9f3fc58028/download)
    [Logs](https://api.biosimulations.org/logs/677d306767468f9f3fc58028?includeOutput=true)
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    HTTP response: 201| +|[00023-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00023-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d30743e750b90a42603d0/download)
    [Logs](https://api.biosimulations.org/logs/677d30743e750b90a42603d0?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3070f8016f90e7cb6625/download)
    [Logs](https://api.biosimulations.org/logs/677d3070f8016f90e7cb6625?includeOutput=true)
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    HTTP response: 201| +|[00024-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00024-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d307c67468f9f3fc5804e/download)
    [Logs](https://api.biosimulations.org/logs/677d307c67468f9f3fc5804e?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3078f8016f90e7cb662d/download)
    [Logs](https://api.biosimulations.org/logs/677d3078f8016f90e7cb662d?includeOutput=true)
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    HTTP response: 201| +|[00025-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00025-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3083f8016f90e7cb6644/download)
    [Logs](https://api.biosimulations.org/logs/677d3083f8016f90e7cb6644?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d307ff8016f90e7cb663f/download)
    [Logs](https://api.biosimulations.org/logs/677d307ff8016f90e7cb663f?includeOutput=true)
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    HTTP response: 201| +|[00026-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00026-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d308af8016f90e7cb665a/download)
    [Logs](https://api.biosimulations.org/logs/677d308af8016f90e7cb665a?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d30873e750b90a4260404/download)
    [Logs](https://api.biosimulations.org/logs/677d30873e750b90a4260404?includeOutput=true)
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    HTTP response: 201| +|[00027-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00027-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d309267468f9f3fc5808b/download)
    [Logs](https://api.biosimulations.org/logs/677d309267468f9f3fc5808b?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d308ef8016f90e7cb6669/download)
    [Logs](https://api.biosimulations.org/logs/677d308ef8016f90e7cb6669?includeOutput=true)
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    HTTP response: 201| +|[00028-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00028-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d309967468f9f3fc5809f/download)
    [Logs](https://api.biosimulations.org/logs/677d309967468f9f3fc5809f?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d30963e750b90a4260424/download)
    [Logs](https://api.biosimulations.org/logs/677d30963e750b90a4260424?includeOutput=true)
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    HTTP response: 201| +|[00029-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00029-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d30a167468f9f3fc580b5/download)
    [Logs](https://api.biosimulations.org/logs/677d30a167468f9f3fc580b5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30a167468f9f3fc580b5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d309d3e750b90a426044d/download)
    [Logs](https://api.biosimulations.org/logs/677d309d3e750b90a426044d?includeOutput=true)
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    HTTP response: 201| +|[00030-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00030-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d30a867468f9f3fc580c5/download)
    [Logs](https://api.biosimulations.org/logs/677d30a867468f9f3fc580c5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30a867468f9f3fc580c5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d30a53e750b90a4260465/download)
    [Logs](https://api.biosimulations.org/logs/677d30a53e750b90a4260465?includeOutput=true)
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    HTTP response: 201| +|[00031-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00031-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d30aef8016f90e7cb66c2/download)
    [Logs](https://api.biosimulations.org/logs/677d30aef8016f90e7cb66c2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30aef8016f90e7cb66c2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d30abf8016f90e7cb66b4/download)
    [Logs](https://api.biosimulations.org/logs/677d30abf8016f90e7cb66b4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30abf8016f90e7cb66b4)

    HTTP response: 201| +|[00032-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00032-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d30b53e750b90a4260488/download)
    [Logs](https://api.biosimulations.org/logs/677d30b53e750b90a4260488?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d30b23e750b90a4260484/download)
    [Logs](https://api.biosimulations.org/logs/677d30b23e750b90a4260484?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30b23e750b90a4260484)

    HTTP response: 201| +|[00033-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00033-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d30bc3e750b90a42604a1/download)
    [Logs](https://api.biosimulations.org/logs/677d30bc3e750b90a42604a1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30bc3e750b90a42604a1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d30b93e750b90a4260490/download)
    [Logs](https://api.biosimulations.org/logs/677d30b93e750b90a4260490?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30b93e750b90a4260490)

    HTTP response: 201| +|[00034-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00034-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d30c2f8016f90e7cb6708/download)
    [Logs](https://api.biosimulations.org/logs/677d30c2f8016f90e7cb6708?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30c2f8016f90e7cb6708)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d30bf3e750b90a42604ae/download)
    [Logs](https://api.biosimulations.org/logs/677d30bf3e750b90a42604ae?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30bf3e750b90a42604ae)

    HTTP response: 201| +|[00035-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00035-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d30c93e750b90a42604cb/download)
    [Logs](https://api.biosimulations.org/logs/677d30c93e750b90a42604cb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30c93e750b90a42604cb)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d30c53e750b90a42604bf/download)
    [Logs](https://api.biosimulations.org/logs/677d30c53e750b90a42604bf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30c53e750b90a42604bf)

    HTTP response: 201| +|[00036-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00036-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d30d067468f9f3fc58140/download)
    [Logs](https://api.biosimulations.org/logs/677d30d067468f9f3fc58140?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30d067468f9f3fc58140)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d30cdf8016f90e7cb672f/download)
    [Logs](https://api.biosimulations.org/logs/677d30cdf8016f90e7cb672f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30cdf8016f90e7cb672f)

    HTTP response: 201| +|[00037-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00037-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d30d7f8016f90e7cb6742/download)
    [Logs](https://api.biosimulations.org/logs/677d30d7f8016f90e7cb6742?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30d7f8016f90e7cb6742)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d30d33e750b90a42604f8/download)
    [Logs](https://api.biosimulations.org/logs/677d30d33e750b90a42604f8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30d33e750b90a42604f8)

    HTTP response: 201| +|[00038-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00038-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d30dd67468f9f3fc5816a/download)
    [Logs](https://api.biosimulations.org/logs/677d30dd67468f9f3fc5816a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30dd67468f9f3fc5816a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d30daf8016f90e7cb674b/download)
    [Logs](https://api.biosimulations.org/logs/677d30daf8016f90e7cb674b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30daf8016f90e7cb674b)

    HTTP response: 201| +|[00039-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00039-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = -1 * k1 + S1 + S2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d30e4f8016f90e7cb6778/download)
    [Logs](https://api.biosimulations.org/logs/677d30e4f8016f90e7cb6778?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30e4f8016f90e7cb6778)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d30e1f8016f90e7cb676a/download)
    [Logs](https://api.biosimulations.org/logs/677d30e1f8016f90e7cb676a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30e1f8016f90e7cb676a)

    HTTP response: 201| +|[00040-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00040-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = -1 * k2 + S1 + S2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d30ebf8016f90e7cb6791/download)
    [Logs](https://api.biosimulations.org/logs/677d30ebf8016f90e7cb6791?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30ebf8016f90e7cb6791)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d30e83e750b90a4260533/download)
    [Logs](https://api.biosimulations.org/logs/677d30e83e750b90a4260533?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30e83e750b90a4260533)

    HTTP response: 201| +|[00041-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00041-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d30f2f8016f90e7cb67aa/download)
    [Logs](https://api.biosimulations.org/logs/677d30f2f8016f90e7cb67aa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30f2f8016f90e7cb67aa)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d30ef67468f9f3fc5819c/download)
    [Logs](https://api.biosimulations.org/logs/677d30ef67468f9f3fc5819c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30ef67468f9f3fc5819c)

    HTTP response: 201| +|[00042-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00042-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d30faf8016f90e7cb67bd/download)
    [Logs](https://api.biosimulations.org/logs/677d30faf8016f90e7cb67bd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30faf8016f90e7cb67bd)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d30f6f8016f90e7cb67b5/download)
    [Logs](https://api.biosimulations.org/logs/677d30f6f8016f90e7cb67b5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30f6f8016f90e7cb67b5)

    HTTP response: 201| +|[00043-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00043-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d310067468f9f3fc581d0/download)
    [Logs](https://api.biosimulations.org/logs/677d310067468f9f3fc581d0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d310067468f9f3fc581d0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d30fdf8016f90e7cb67c5/download)
    [Logs](https://api.biosimulations.org/logs/677d30fdf8016f90e7cb67c5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d30fdf8016f90e7cb67c5)

    HTTP response: 201| +|[00044-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00044-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3109f8016f90e7cb67de/download)
    [Logs](https://api.biosimulations.org/logs/677d3109f8016f90e7cb67de?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3109f8016f90e7cb67de)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3105f8016f90e7cb67db/download)
    [Logs](https://api.biosimulations.org/logs/677d3105f8016f90e7cb67db?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3105f8016f90e7cb67db)

    HTTP response: 201| +|[00045-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00045-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d310f67468f9f3fc581fb/download)
    [Logs](https://api.biosimulations.org/logs/677d310f67468f9f3fc581fb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d310f67468f9f3fc581fb)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d310cf8016f90e7cb67f4/download)
    [Logs](https://api.biosimulations.org/logs/677d310cf8016f90e7cb67f4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d310cf8016f90e7cb67f4)

    HTTP response: 201| +|[00046-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00046-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3117f8016f90e7cb6807/download)
    [Logs](https://api.biosimulations.org/logs/677d3117f8016f90e7cb6807?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3117f8016f90e7cb6807)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3114f8016f90e7cb6802/download)
    [Logs](https://api.biosimulations.org/logs/677d3114f8016f90e7cb6802?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3114f8016f90e7cb6802)

    HTTP response: 201| +|[00047-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00047-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d311e67468f9f3fc5822b/download)
    [Logs](https://api.biosimulations.org/logs/677d311e67468f9f3fc5822b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d311e67468f9f3fc5822b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d311bf8016f90e7cb6812/download)
    [Logs](https://api.biosimulations.org/logs/677d311bf8016f90e7cb6812?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d311bf8016f90e7cb6812)

    HTTP response: 201| +|[00048-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00048-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3124f8016f90e7cb6829/download)
    [Logs](https://api.biosimulations.org/logs/677d3124f8016f90e7cb6829?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3124f8016f90e7cb6829)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3122f8016f90e7cb6823/download)
    [Logs](https://api.biosimulations.org/logs/677d3122f8016f90e7cb6823?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3122f8016f90e7cb6823)

    HTTP response: 201| +|[00049-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00049-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d312b67468f9f3fc58249/download)
    [Logs](https://api.biosimulations.org/logs/677d312b67468f9f3fc58249?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d312b67468f9f3fc58249)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3128f8016f90e7cb6839/download)
    [Logs](https://api.biosimulations.org/logs/677d3128f8016f90e7cb6839?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3128f8016f90e7cb6839)

    HTTP response: 201| +|[00050-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00050-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d31313e750b90a426062d/download)
    [Logs](https://api.biosimulations.org/logs/677d31313e750b90a426062d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d31313e750b90a426062d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d312f3e750b90a426060b/download)
    [Logs](https://api.biosimulations.org/logs/677d312f3e750b90a426060b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d312f3e750b90a426060b)

    HTTP response: 201| +|[00051-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00051-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d31383e750b90a4260642/download)
    [Logs](https://api.biosimulations.org/logs/677d31383e750b90a4260642?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d31383e750b90a4260642)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3135f8016f90e7cb6864/download)
    [Logs](https://api.biosimulations.org/logs/677d3135f8016f90e7cb6864?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3135f8016f90e7cb6864)

    HTTP response: 201| +|[00052-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00052-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d313e67468f9f3fc58281/download)
    [Logs](https://api.biosimulations.org/logs/677d313e67468f9f3fc58281?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d313e67468f9f3fc58281)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d313bf8016f90e7cb6870/download)
    [Logs](https://api.biosimulations.org/logs/677d313bf8016f90e7cb6870?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d313bf8016f90e7cb6870)

    HTTP response: 201| +|[00053-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00053-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3145f8016f90e7cb6895/download)
    [Logs](https://api.biosimulations.org/logs/677d3145f8016f90e7cb6895?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3145f8016f90e7cb6895)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3142f8016f90e7cb688d/download)
    [Logs](https://api.biosimulations.org/logs/677d3142f8016f90e7cb688d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3142f8016f90e7cb688d)

    HTTP response: 201| +|[00054-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00054-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d314b67468f9f3fc582a8/download)
    [Logs](https://api.biosimulations.org/logs/677d314b67468f9f3fc582a8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d314b67468f9f3fc582a8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d31483e750b90a4260671/download)
    [Logs](https://api.biosimulations.org/logs/677d31483e750b90a4260671?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d31483e750b90a4260671)

    HTTP response: 201| +|[00055-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00055-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d315267468f9f3fc582b8/download)
    [Logs](https://api.biosimulations.org/logs/677d315267468f9f3fc582b8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d315267468f9f3fc582b8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d314f67468f9f3fc582b5/download)
    [Logs](https://api.biosimulations.org/logs/677d314f67468f9f3fc582b5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d314f67468f9f3fc582b5)

    HTTP response: 201| +|[00056-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00056-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d315967468f9f3fc582cc/download)
    [Logs](https://api.biosimulations.org/logs/677d315967468f9f3fc582cc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d315967468f9f3fc582cc)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d31553e750b90a4260695/download)
    [Logs](https://api.biosimulations.org/logs/677d31553e750b90a4260695?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d31553e750b90a4260695)

    HTTP response: 201| +|[00057-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00057-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d316067468f9f3fc582e2/download)
    [Logs](https://api.biosimulations.org/logs/677d316067468f9f3fc582e2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d316067468f9f3fc582e2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d315cf8016f90e7cb68e9/download)
    [Logs](https://api.biosimulations.org/logs/677d315cf8016f90e7cb68e9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d315cf8016f90e7cb68e9)

    HTTP response: 201| +|[00058-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00058-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3167f8016f90e7cb6927/download)
    [Logs](https://api.biosimulations.org/logs/677d3167f8016f90e7cb6927?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3167f8016f90e7cb6927)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3164f8016f90e7cb691b/download)
    [Logs](https://api.biosimulations.org/logs/677d3164f8016f90e7cb691b?includeOutput=true)
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    HTTP response: 201| +|[00059-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00059-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d316ef8016f90e7cb6933/download)
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    pass[Download](https://api.biosimulations.org/results/677d316b3e750b90a42606d1/download)
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    HTTP response: 201| +|[00060-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00060-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3171f8016f90e7cb693d/download)
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    HTTP response: 201| +|[00061-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00061-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
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    HTTP response: 201| +|[00062-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00062-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00063-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00063-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
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    HTTP response: 201| +|[00064-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00064-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d318cf8016f90e7cb699c/download)
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    HTTP response: 201| +|[00065-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00065-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d31953e750b90a4260742/download)
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    pass[Download](https://api.biosimulations.org/results/677d31923e750b90a426073b/download)
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    HTTP response: 201| +|[00066-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00066-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d319c67468f9f3fc583a9/download)
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    pass[Download](https://api.biosimulations.org/results/677d319967468f9f3fc5839e/download)
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    HTTP response: 201| +|[00067-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00067-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d31a33e750b90a4260763/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d31a067468f9f3fc583b6/download)
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    HTTP response: 201| +|[00068-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00068-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d31aa67468f9f3fc583d5/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d31a6f8016f90e7cb6a05/download)
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    HTTP response: 201| +|[00069-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00069-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d31b03e750b90a4260795/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d31ad3e750b90a4260786/download)
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    HTTP response: 201| +|[00070-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00070-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d31b7f8016f90e7cb6a45/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d31b467468f9f3fc583e7/download)
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    HTTP response: 201| +|[00071-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00071-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d31bd67468f9f3fc58408/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d31ba67468f9f3fc583f9/download)
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    HTTP response: 201| +|[00072-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00072-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d31c4f8016f90e7cb6a6a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d31c03e750b90a42607bd/download)
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    HTTP response: 201| +|[00073-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00073-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d31caf8016f90e7cb6a81/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d31c7f8016f90e7cb6a74/download)
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    HTTP response: 201| +|[00074-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00074-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d31d13e750b90a42607fa/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d31cef8016f90e7cb6a90/download)
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    HTTP response: 201| +|[00075-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00075-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d31d83e750b90a426080f/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d31d5f8016f90e7cb6aa0/download)
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    HTTP response: 201| +|[00076-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00076-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d31df67468f9f3fc58482/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d31dc67468f9f3fc58479/download)
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    HTTP response: 201| +|[00077-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00077-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d31e6f8016f90e7cb6ad2/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d31e367468f9f3fc5848d/download)
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    HTTP response: 201| +|[00078-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00078-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d31ee67468f9f3fc584a3/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d31eaf8016f90e7cb6ad7/download)
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    HTTP response: 201| +|[00079-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00079-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d31f467468f9f3fc584bf/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d31f13e750b90a426085f/download)
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    HTTP response: 201| +|[00080-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00080-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d31fbf8016f90e7cb6b0a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d31f83e750b90a4260870/download)
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    HTTP response: 201| +|[00081-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00081-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d320267468f9f3fc584e3/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d31ff67468f9f3fc584d9/download)
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    HTTP response: 201| +|[00082-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00082-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d320967468f9f3fc584f2/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3205f8016f90e7cb6b33/download)
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    HTTP response: 201| +|[00083-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00083-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d32113e750b90a42608c0/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d320d67468f9f3fc58500/download)
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    HTTP response: 201| +|[00084-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00084-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d321867468f9f3fc58520/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d321567468f9f3fc5851c/download)
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    HTTP response: 201| +|[00085-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00085-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d32203e750b90a42608e3/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d321cf8016f90e7cb6b70/download)
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    HTTP response: 201| +|[00086-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00086-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3223f8016f90e7cb6b87/download)
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    HTTP response: 201| +|[00087-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00087-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d322a3e750b90a426090f/download)
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    HTTP response: 201| +|[00088-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00088-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00089-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00089-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d323c3e750b90a426094b/download)
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    HTTP response: 201| +|[00090-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00090-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d324167468f9f3fc58596/download)
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    HTTP response: 201| +|[00091-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00091-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d324b67468f9f3fc585b3/download)
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    pass[Download](https://api.biosimulations.org/results/677d3248f8016f90e7cb6bef/download)
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    HTTP response: 201| +|[00092-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00092-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3252f8016f90e7cb6bff/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d324f67468f9f3fc585c5/download)
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    HTTP response: 201| +|[00093-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00093-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d325967468f9f3fc585de/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3256f8016f90e7cb6c0a/download)
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    HTTP response: 201| +|[00094-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00094-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d326167468f9f3fc585fb/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d325c3e750b90a426099a/download)
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    HTTP response: 201| +|[00095-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00095-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3269f8016f90e7cb6c45/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3266f8016f90e7cb6c36/download)
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    HTTP response: 201| +|[00096-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00096-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3270f8016f90e7cb6c57/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d326d3e750b90a42609d2/download)
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    HTTP response: 201| +|[00097-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00097-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3277f8016f90e7cb6c68/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d32743e750b90a42609e5/download)
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    HTTP response: 201| +|[00098-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00098-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3280f8016f90e7cb6c88/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d327df8016f90e7cb6c83/download)
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    HTTP response: 201| +|[00099-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00099-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d328667468f9f3fc58662/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d328367468f9f3fc58653/download)
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    HTTP response: 201| +|[00100-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00100-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d328d67468f9f3fc58673/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3289f8016f90e7cb6cb4/download)
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    HTTP response: 201| +|[00101-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00101-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d329367468f9f3fc58683/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d32903e750b90a4260a2c/download)
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    HTTP response: 201| +|[00102-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00102-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d329a3e750b90a4260a4a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d32973e750b90a4260a42/download)
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    HTTP response: 201| +|[00103-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00103-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d32a0f8016f90e7cb6cfd/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d329d67468f9f3fc586a1/download)
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    HTTP response: 201| +|[00104-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00104-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d32a73e750b90a4260a6c/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d32a367468f9f3fc586cf/download)
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    HTTP response: 201| +|[00105-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00105-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d32aff8016f90e7cb6d28/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d32ab3e750b90a4260a7c/download)
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    HTTP response: 201| +|[00106-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00106-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d32b667468f9f3fc586f4/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d32b23e750b90a4260a8b/download)
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    HTTP response: 201| +|[00107-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00107-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d32bc3e750b90a4260aa7/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d32b967468f9f3fc586fe/download)
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    HTTP response: 201| +|[00108-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00108-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d32c367468f9f3fc58737/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d32c03e750b90a4260ab1/download)
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    HTTP response: 201| +|[00109-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00109-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d32cbf8016f90e7cb6d86/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d32c73e750b90a4260ac6/download)
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    HTTP response: 201| +|[00110-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00110-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d32d13e750b90a4260ae1/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d32ce67468f9f3fc58758/download)
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    HTTP response: 201| +|[00111-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00111-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d32d83e750b90a4260afe/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d32d567468f9f3fc58766/download)
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    HTTP response: 201| +|[00112-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00112-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
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    HTTP response: 201| +|[00113-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00113-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d32e567468f9f3fc5879e/download)
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    HTTP response: 201| +|[00114-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00114-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    pass[Download](https://api.biosimulations.org/results/677d32e8f8016f90e7cb6de7/download)
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    HTTP response: 201| +|[00115-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00115-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00116-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00116-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d32f8f8016f90e7cb6e18/download)
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    HTTP response: 201| +|[00117-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00117-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d32ff67468f9f3fc587fc/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d32fc3e750b90a4260b4b/download)
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    HTTP response: 201| +|[00118-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00118-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d33053e750b90a4260b75/download)
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    HTTP response: 201| +|[00119-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00119-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d330c67468f9f3fc58823/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d33093e750b90a4260b83/download)
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    HTTP response: 201| +|[00120-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00120-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d33133e750b90a4260ba6/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d330ff8016f90e7cb6e6b/download)
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    HTTP response: 201| +|[00121-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00121-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d33193e750b90a4260bb7/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d331667468f9f3fc58843/download)
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    HTTP response: 201| +|[00122-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00122-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d33203e750b90a4260bc7/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d331d67468f9f3fc58859/download)
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    HTTP response: 201| +|[00123-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00123-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d332667468f9f3fc58881/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3323f8016f90e7cb6ea3/download)
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    HTTP response: 201| +|[00124-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00124-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d332d67468f9f3fc58895/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d332a3e750b90a4260bec/download)
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    HTTP response: 201| +|[00125-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00125-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d333467468f9f3fc588ac/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3331f8016f90e7cb6ec7/download)
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    HTTP response: 201| +|[00126-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00126-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d333b67468f9f3fc588bc/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3338f8016f90e7cb6ee1/download)
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    HTTP response: 201| +|[00127-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00127-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3341f8016f90e7cb6f0a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d333ef8016f90e7cb6efe/download)
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    HTTP response: 201| +|[00128-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00128-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d334967468f9f3fc588e8/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d33463e750b90a4260c37/download)
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    HTTP response: 201| +|[00129-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00129-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d33513e750b90a4260c56/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d334e3e750b90a4260c4e/download)
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    HTTP response: 201| +|[00130-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00130-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d335867468f9f3fc5890f/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3354f8016f90e7cb6f3c/download)
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    HTTP response: 201| +|[00131-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00131-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d335e67468f9f3fc58921/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d335b67468f9f3fc58918/download)
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    HTTP response: 201| +|[00132-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00132-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d336567468f9f3fc58938/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3361f8016f90e7cb6f78/download)
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    HTTP response: 201| +|[00133-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00133-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d336b67468f9f3fc58949/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d336867468f9f3fc58945/download)
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    HTTP response: 201| +|[00134-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00134-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d337367468f9f3fc58972/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d336f67468f9f3fc58965/download)
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    HTTP response: 201| +|[00135-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00135-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d33793e750b90a4260ccd/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d33763e750b90a4260cc1/download)
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    HTTP response: 201| +|[00136-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00136-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d337ff8016f90e7cb6fb6/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d337c3e750b90a4260cde/download)
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    HTTP response: 201| +|[00137-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00137-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d338667468f9f3fc589ac/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3383f8016f90e7cb6fc4/download)
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    HTTP response: 201| +|[00138-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00138-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
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    HTTP response: 201| +|[00139-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00139-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00140-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00140-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00141-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00141-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
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    HTTP response: 201| +|[00142-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00142-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00143-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00143-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
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    HTTP response: 201| +|[00144-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00144-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00145-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00145-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d33b93e750b90a4260da8/download)
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    HTTP response: 201| +|[00146-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00146-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d33bf3e750b90a4260dc1/download)
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    HTTP response: 201| +|[00147-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00147-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d33c93e750b90a4260dde/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d33c63e750b90a4260dd6/download)
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    HTTP response: 201| +|[00148-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00148-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d33d067468f9f3fc58a99/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d33cd3e750b90a4260de6/download)
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    HTTP response: 201| +|[00149-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00149-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d33d767468f9f3fc58aba/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d33d367468f9f3fc58aa9/download)
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    HTTP response: 201| +|[00150-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00150-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d33ddf8016f90e7cb7103/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d33daf8016f90e7cb70ec/download)
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    HTTP response: 201| +|[00151-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00151-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d33e467468f9f3fc58ada/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d33e167468f9f3fc58ad5/download)
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    HTTP response: 201| +|[00152-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00152-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d33ea67468f9f3fc58aeb/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d33e73e750b90a4260e22/download)
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    HTTP response: 201| +|[00153-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00153-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d33f13e750b90a4260e3e/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d33ee67468f9f3fc58af1/download)
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    HTTP response: 201| +|[00154-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00154-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d33f867468f9f3fc58b25/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d33f567468f9f3fc58b0f/download)
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    HTTP response: 201| +|[00155-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00155-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d33fe3e750b90a4260e68/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d33fbf8016f90e7cb7172/download)
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    HTTP response: 201| +|[00156-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00156-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d340567468f9f3fc58b49/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d340267468f9f3fc58b34/download)
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    HTTP response: 201| +|[00157-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00157-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d340b3e750b90a4260e92/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3408f8016f90e7cb719d/download)
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    HTTP response: 201| +|[00158-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00158-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d34123e750b90a4260eae/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d340ff8016f90e7cb71ab/download)
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    HTTP response: 201| +|[00159-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00159-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d34183e750b90a4260ecf/download)
    [Logs](https://api.biosimulations.org/logs/677d34183e750b90a4260ecf?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d341567468f9f3fc58b77/download)
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    HTTP response: 201| +|[00160-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00160-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d341f3e750b90a4260ee8/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d341b3e750b90a4260edf/download)
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    HTTP response: 201| +|[00161-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00161-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3426f8016f90e7cb7204/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d342267468f9f3fc58ba0/download)
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    HTTP response: 201| +|[00162-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00162-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d342d3e750b90a4260f18/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d342a3e750b90a4260f0a/download)
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    HTTP response: 201| +|[00163-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00163-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d34343e750b90a4260f2e/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3430f8016f90e7cb7217/download)
    [Logs](https://api.biosimulations.org/logs/677d3430f8016f90e7cb7217?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3430f8016f90e7cb7217)

    HTTP response: 201| +|[00164-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00164-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d343bf8016f90e7cb723b/download)
    [Logs](https://api.biosimulations.org/logs/677d343bf8016f90e7cb723b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d343bf8016f90e7cb723b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d343867468f9f3fc58bd6/download)
    [Logs](https://api.biosimulations.org/logs/677d343867468f9f3fc58bd6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d343867468f9f3fc58bd6)

    HTTP response: 201| +|[00165-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00165-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d344367468f9f3fc58bf5/download)
    [Logs](https://api.biosimulations.org/logs/677d344367468f9f3fc58bf5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d344367468f9f3fc58bf5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3440f8016f90e7cb7241/download)
    [Logs](https://api.biosimulations.org/logs/677d3440f8016f90e7cb7241?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3440f8016f90e7cb7241)

    HTTP response: 201| +|[00166-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00166-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d34493e750b90a4260f7b/download)
    [Logs](https://api.biosimulations.org/logs/677d34493e750b90a4260f7b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34493e750b90a4260f7b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d34463e750b90a4260f71/download)
    [Logs](https://api.biosimulations.org/logs/677d34463e750b90a4260f71?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34463e750b90a4260f71)

    HTTP response: 201| +|[00167-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00167-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d345067468f9f3fc58c1a/download)
    [Logs](https://api.biosimulations.org/logs/677d345067468f9f3fc58c1a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d345067468f9f3fc58c1a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d344df8016f90e7cb726f/download)
    [Logs](https://api.biosimulations.org/logs/677d344df8016f90e7cb726f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d344df8016f90e7cb726f)

    HTTP response: 201| +|[00168-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00168-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d34583e750b90a4260fa5/download)
    [Logs](https://api.biosimulations.org/logs/677d34583e750b90a4260fa5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34583e750b90a4260fa5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d345467468f9f3fc58c26/download)
    [Logs](https://api.biosimulations.org/logs/677d345467468f9f3fc58c26?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d345467468f9f3fc58c26)

    HTTP response: 201| +|[00169-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00169-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d345f67468f9f3fc58c56/download)
    [Logs](https://api.biosimulations.org/logs/677d345f67468f9f3fc58c56?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d345f67468f9f3fc58c56)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d345b3e750b90a4260fae/download)
    [Logs](https://api.biosimulations.org/logs/677d345b3e750b90a4260fae?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d345b3e750b90a4260fae)

    HTTP response: 201| +|[00170-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00170-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d346567468f9f3fc58c69/download)
    [Logs](https://api.biosimulations.org/logs/677d346567468f9f3fc58c69?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d346567468f9f3fc58c69)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d34623e750b90a4260fc0/download)
    [Logs](https://api.biosimulations.org/logs/677d34623e750b90a4260fc0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34623e750b90a4260fc0)

    HTTP response: 201| +|[00171-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00171-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d346d67468f9f3fc58c76/download)
    [Logs](https://api.biosimulations.org/logs/677d346d67468f9f3fc58c76?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d346d67468f9f3fc58c76)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d34693e750b90a4260fd8/download)
    [Logs](https://api.biosimulations.org/logs/677d34693e750b90a4260fd8?includeOutput=true)
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    HTTP response: 201| +|[00172-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00172-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3473f8016f90e7cb72d1/download)
    [Logs](https://api.biosimulations.org/logs/677d3473f8016f90e7cb72d1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3473f8016f90e7cb72d1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d347067468f9f3fc58c87/download)
    [Logs](https://api.biosimulations.org/logs/677d347067468f9f3fc58c87?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d347067468f9f3fc58c87)

    HTTP response: 201| +|[00173-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00173-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d347a67468f9f3fc58ca3/download)
    [Logs](https://api.biosimulations.org/logs/677d347a67468f9f3fc58ca3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d347a67468f9f3fc58ca3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d34773e750b90a4261002/download)
    [Logs](https://api.biosimulations.org/logs/677d34773e750b90a4261002?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34773e750b90a4261002)

    HTTP response: 201| +|[00174-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00174-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3481f8016f90e7cb72f5/download)
    [Logs](https://api.biosimulations.org/logs/677d3481f8016f90e7cb72f5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3481f8016f90e7cb72f5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d347ef8016f90e7cb72ef/download)
    [Logs](https://api.biosimulations.org/logs/677d347ef8016f90e7cb72ef?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d347ef8016f90e7cb72ef)

    HTTP response: 201| +|[00175-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00175-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d34883e750b90a426103c/download)
    [Logs](https://api.biosimulations.org/logs/677d34883e750b90a426103c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34883e750b90a426103c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d34853e750b90a4261030/download)
    [Logs](https://api.biosimulations.org/logs/677d34853e750b90a4261030?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34853e750b90a4261030)

    HTTP response: 201| +|[00176-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00176-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d348f67468f9f3fc58ce2/download)
    [Logs](https://api.biosimulations.org/logs/677d348f67468f9f3fc58ce2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d348f67468f9f3fc58ce2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d348b67468f9f3fc58cd1/download)
    [Logs](https://api.biosimulations.org/logs/677d348b67468f9f3fc58cd1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d348b67468f9f3fc58cd1)

    HTTP response: 201| +|[00177-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00177-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3496f8016f90e7cb733e/download)
    [Logs](https://api.biosimulations.org/logs/677d3496f8016f90e7cb733e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3496f8016f90e7cb733e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d34923e750b90a4261059/download)
    [Logs](https://api.biosimulations.org/logs/677d34923e750b90a4261059?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34923e750b90a4261059)

    HTTP response: 201| +|[00178-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00178-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d349c3e750b90a4261090/download)
    [Logs](https://api.biosimulations.org/logs/677d349c3e750b90a4261090?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d349c3e750b90a4261090)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d349967468f9f3fc58cfa/download)
    [Logs](https://api.biosimulations.org/logs/677d349967468f9f3fc58cfa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d349967468f9f3fc58cfa)

    HTTP response: 201| +|[00179-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00179-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d34a3f8016f90e7cb7376/download)
    [Logs](https://api.biosimulations.org/logs/677d34a3f8016f90e7cb7376?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34a3f8016f90e7cb7376)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d34a0f8016f90e7cb735f/download)
    [Logs](https://api.biosimulations.org/logs/677d34a0f8016f90e7cb735f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34a0f8016f90e7cb735f)

    HTTP response: 201| +|[00180-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00180-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d34ab3e750b90a42610b7/download)
    [Logs](https://api.biosimulations.org/logs/677d34ab3e750b90a42610b7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34ab3e750b90a42610b7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d34a73e750b90a42610ac/download)
    [Logs](https://api.biosimulations.org/logs/677d34a73e750b90a42610ac?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34a73e750b90a42610ac)

    HTTP response: 201| +|[00181-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00181-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d34b1f8016f90e7cb739f/download)
    [Logs](https://api.biosimulations.org/logs/677d34b1f8016f90e7cb739f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34b1f8016f90e7cb739f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d34ae3e750b90a42610c3/download)
    [Logs](https://api.biosimulations.org/logs/677d34ae3e750b90a42610c3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34ae3e750b90a42610c3)

    HTTP response: 201| +|[00182-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00182-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = -1 * k1 + S1 + S2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d34bbf8016f90e7cb73b5/download)
    [Logs](https://api.biosimulations.org/logs/677d34bbf8016f90e7cb73b5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34bbf8016f90e7cb73b5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d34b5f8016f90e7cb73a9/download)
    [Logs](https://api.biosimulations.org/logs/677d34b5f8016f90e7cb73a9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34b5f8016f90e7cb73a9)

    HTTP response: 201| +|[00183-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00183-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d34c23e750b90a4261103/download)
    [Logs](https://api.biosimulations.org/logs/677d34c23e750b90a4261103?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34c23e750b90a4261103)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d34bf67468f9f3fc58d70/download)
    [Logs](https://api.biosimulations.org/logs/677d34bf67468f9f3fc58d70?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34bf67468f9f3fc58d70)

    HTTP response: 201| +|[00184-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00184-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = add(S1, add(S2, -1 * k1))' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d34ca3e750b90a426111b/download)
    [Logs](https://api.biosimulations.org/logs/677d34ca3e750b90a426111b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34ca3e750b90a426111b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d34c7f8016f90e7cb73cf/download)
    [Logs](https://api.biosimulations.org/logs/677d34c7f8016f90e7cb73cf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34c7f8016f90e7cb73cf)

    HTTP response: 201| +|[00185-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00185-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d34d1f8016f90e7cb73f2/download)
    [Logs](https://api.biosimulations.org/logs/677d34d1f8016f90e7cb73f2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34d1f8016f90e7cb73f2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d34ce3e750b90a4261120/download)
    [Logs](https://api.biosimulations.org/logs/677d34ce3e750b90a4261120?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34ce3e750b90a4261120)

    HTTP response: 201| +|[00186-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00186-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d34d867468f9f3fc58daf/download)
    [Logs](https://api.biosimulations.org/logs/677d34d867468f9f3fc58daf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34d867468f9f3fc58daf)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d34d5f8016f90e7cb73fd/download)
    [Logs](https://api.biosimulations.org/logs/677d34d5f8016f90e7cb73fd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34d5f8016f90e7cb73fd)

    HTTP response: 201| +|[00187-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00187-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d34df3e750b90a4261150/download)
    [Logs](https://api.biosimulations.org/logs/677d34df3e750b90a4261150?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34df3e750b90a4261150)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d34dc67468f9f3fc58db8/download)
    [Logs](https://api.biosimulations.org/logs/677d34dc67468f9f3fc58db8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34dc67468f9f3fc58db8)

    HTTP response: 201| +|[00188-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00188-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d34e6f8016f90e7cb7434/download)
    [Logs](https://api.biosimulations.org/logs/677d34e6f8016f90e7cb7434?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34e6f8016f90e7cb7434)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d34e2f8016f90e7cb742c/download)
    [Logs](https://api.biosimulations.org/logs/677d34e2f8016f90e7cb742c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34e2f8016f90e7cb742c)

    HTTP response: 201| +|[00189-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00189-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d34ed67468f9f3fc58de8/download)
    [Logs](https://api.biosimulations.org/logs/677d34ed67468f9f3fc58de8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d34ed67468f9f3fc58de8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d34e967468f9f3fc58ddf/download)
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    HTTP response: 201| +|[00190-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00190-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00191-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00191-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00192-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00192-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00193-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00193-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00194-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00194-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00195-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00195-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00196-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00196-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00197-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00197-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00198-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00198-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d352ef8016f90e7cb7501/download)
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    HTTP response: 201| +|[00199-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00199-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3534f8016f90e7cb7519/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d35313e750b90a4261223/download)
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    HTTP response: 201| +|[00200-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00200-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d353b67468f9f3fc58ec3/download)
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    HTTP response: 201|
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    HTTP response: 201| +|[00201-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00201-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3542f8016f90e7cb7540/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d353f67468f9f3fc58ed3/download)
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    HTTP response: 201| +|[00202-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00202-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d35493e750b90a4261281/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d35463e750b90a426127c/download)
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    HTTP response: 201| +|[00203-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00203-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d354f67468f9f3fc58f0d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d354c67468f9f3fc58efa/download)
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    HTTP response: 201| +|[00204-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00204-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d35563e750b90a42612a9/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d355367468f9f3fc58f11/download)
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    HTTP response: 201| +|[00205-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00205-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d355d3e750b90a42612be/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d355a67468f9f3fc58f23/download)
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    HTTP response: 201| +|[00206-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00206-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3564f8016f90e7cb75a9/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d356067468f9f3fc58f3f/download)
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    HTTP response: 201| +|[00207-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00207-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d356b67468f9f3fc58f61/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3568f8016f90e7cb75b6/download)
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    HTTP response: 201| +|[00208-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00208-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d35723e750b90a42612f3/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d356e3e750b90a42612ea/download)
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    HTTP response: 201| +|[00209-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00209-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d35793e750b90a426130f/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d35763e750b90a42612ff/download)
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    HTTP response: 201| +|[00210-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00210-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d357ff8016f90e7cb75ff/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d357cf8016f90e7cb75f7/download)
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    HTTP response: 201| +|[00211-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00211-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d35863e750b90a426133b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d358367468f9f3fc58fa1/download)
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    HTTP response: 201| +|[00212-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00212-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d358d3e750b90a426134c/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d358a3e750b90a4261346/download)
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    HTTP response: 201| +|[00213-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00213-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d35953e750b90a4261364/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3592f8016f90e7cb7636/download)
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    HTTP response: 201| +|[00214-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00214-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d359cf8016f90e7cb765c/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d35983e750b90a426136e/download)
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    HTTP response: 201| +|[00215-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00215-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d35a23e750b90a4261392/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d359ff8016f90e7cb7665/download)
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    HTTP response: 201| +|[00216-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00216-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d35aaf8016f90e7cb7688/download)
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    HTTP response: 201| +|[00217-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00217-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00218-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00218-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00219-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00219-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00220-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00220-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00221-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00221-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00222-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00222-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00223-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00223-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00224-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00224-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00225-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00225-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d35e8f8016f90e7cb7733/download)
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    pass[Download](https://api.biosimulations.org/results/677d35e53e750b90a4261466/download)
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    HTTP response: 201| +|[00226-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00226-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d35ef3e750b90a4261493/download)
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    HTTP response: 201| +|[00227-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00227-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d35f6f8016f90e7cb7761/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d35f267468f9f3fc590ff/download)
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    HTTP response: 201| +|[00228-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00228-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d35fc3e750b90a42614c1/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d35f967468f9f3fc5910f/download)
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    HTTP response: 201| +|[00229-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00229-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d360367468f9f3fc59127/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3600f8016f90e7cb7783/download)
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    HTTP response: 201| +|[00230-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00230-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d360bf8016f90e7cb77b2/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d36073e750b90a42614e0/download)
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    HTTP response: 201| +|[00231-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00231-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3612f8016f90e7cb77c5/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d360e3e750b90a42614f2/download)
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    HTTP response: 201| +|[00232-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00232-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d361a67468f9f3fc5916c/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d36163e750b90a4261508/download)
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    HTTP response: 201| +|[00233-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00233-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d362067468f9f3fc59187/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d361df8016f90e7cb77e7/download)
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    HTTP response: 201| +|[00234-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00234-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3626f8016f90e7cb781a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d362367468f9f3fc59198/download)
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    HTTP response: 201| +|[00235-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00235-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d362df8016f90e7cb7825/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d362a3e750b90a4261532/download)
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    HTTP response: 201| +|[00236-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00236-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d363467468f9f3fc591ce/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3631f8016f90e7cb7831/download)
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    HTTP response: 201| +|[00237-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00237-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d363b3e750b90a4261575/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3638f8016f90e7cb784b/download)
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    HTTP response: 201| +|[00238-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00238-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d364167468f9f3fc591fa/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d363e67468f9f3fc591e9/download)
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    HTTP response: 201| +|[00239-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00239-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d36483e750b90a426159c/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3645f8016f90e7cb7871/download)
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    HTTP response: 201| +|[00240-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00240-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d364f67468f9f3fc5921e/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d364bf8016f90e7cb7888/download)
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    HTTP response: 201| +|[00241-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00241-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3655f8016f90e7cb78a7/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3652f8016f90e7cb789f/download)
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    HTTP response: 201| +|[00242-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00242-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d365df8016f90e7cb78c4/download)
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    pass[Download](https://api.biosimulations.org/results/677d3659f8016f90e7cb78ac/download)
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    HTTP response: 201| +|[00243-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00243-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00244-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00244-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00245-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00245-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00246-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00246-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00247-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00247-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00248-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00248-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00249-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00249-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00250-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00250-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00251-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00251-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00252-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00252-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d36a067468f9f3fc59310/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d369d3e750b90a42616aa/download)
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    HTTP response: 201| +|[00253-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00253-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d36a63e750b90a42616c8/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d36a3f8016f90e7cb7998/download)
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    HTTP response: 201| +|[00254-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00254-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d36adf8016f90e7cb79c5/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d36aa3e750b90a42616d1/download)
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    HTTP response: 201| +|[00255-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00255-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d36b43e750b90a42616ed/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d36b1f8016f90e7cb79d0/download)
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    HTTP response: 201| +|[00256-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00256-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d36bb3e750b90a4261702/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d36b867468f9f3fc59360/download)
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    HTTP response: 201| +|[00257-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00257-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d36c267468f9f3fc5937e/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d36bf3e750b90a426170b/download)
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    HTTP response: 201| +|[00258-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00258-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d36c8f8016f90e7cb7a0b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d36c667468f9f3fc59387/download)
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    HTTP response: 201| +|[00259-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00259-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d36cf3e750b90a426174d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d36ccf8016f90e7cb7a13/download)
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    HTTP response: 201| +|[00260-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00260-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d36d667468f9f3fc593bc/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d36d23e750b90a4261752/download)
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    HTTP response: 201| +|[00261-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00261-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d36dc3e750b90a4261769/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d36d867468f9f3fc593c9/download)
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    HTTP response: 201| +|[00262-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00262-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d36e267468f9f3fc593fb/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d36df67468f9f3fc593e0/download)
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    HTTP response: 201| +|[00263-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00263-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d36e93e750b90a4261797/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d36e6f8016f90e7cb7a65/download)
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    HTTP response: 201| +|[00264-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00264-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d36f03e750b90a42617af/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d36ed3e750b90a42617a5/download)
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    HTTP response: 201| +|[00265-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00265-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d36f6f8016f90e7cb7aa1/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d36f367468f9f3fc5941d/download)
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    HTTP response: 201| +|[00266-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00266-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d36fd3e750b90a42617d6/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d36fa3e750b90a42617cb/download)
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    HTTP response: 201| +|[00267-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00267-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3705f8016f90e7cb7adb/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d370167468f9f3fc5943e/download)
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    HTTP response: 201| +|[00268-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00268-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d370b67468f9f3fc59462/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d37083e750b90a42617f7/download)
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    HTTP response: 201| +|[00269-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00269-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00270-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00270-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00271-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00271-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00272-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00272-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00273-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00273-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00274-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00274-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00275-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00275-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00276-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00276-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00277-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00277-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00278-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00278-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00279-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00279-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    pass[Download](https://api.biosimulations.org/results/677d3753f8016f90e7cb7be0/download)
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    HTTP response: 201| +|[00280-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00280-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00281-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00281-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d376467468f9f3fc59574/download)
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    pass[Download](https://api.biosimulations.org/results/677d3760f8016f90e7cb7c09/download)
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    HTTP response: 201| +|[00282-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00282-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d376a67468f9f3fc5958f/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d37673e750b90a426190a/download)
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    HTTP response: 201| +|[00283-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00283-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d377167468f9f3fc5959f/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d376ef8016f90e7cb7c36/download)
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    HTTP response: 201| +|[00284-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00284-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3777f8016f90e7cb7c4c/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d377467468f9f3fc595a8/download)
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    HTTP response: 201| +|[00285-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00285-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d377f67468f9f3fc595c8/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d377bf8016f90e7cb7c5d/download)
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    HTTP response: 201| +|[00286-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00286-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d37863e750b90a4261965/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3782f8016f90e7cb7c72/download)
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    HTTP response: 201| +|[00287-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00287-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d378cf8016f90e7cb7c93/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d378967468f9f3fc595e0/download)
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    HTTP response: 201| +|[00288-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00288-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d379367468f9f3fc595fa/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d378f67468f9f3fc595f7/download)
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    HTTP response: 201| +|[00289-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00289-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d379a3e750b90a42619ab/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d37963e750b90a42619a5/download)
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    HTTP response: 201| +|[00290-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00290-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d37a167468f9f3fc59633/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d379d67468f9f3fc59628/download)
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    HTTP response: 201| +|[00291-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00291-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d37a767468f9f3fc59641/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d37a43e750b90a42619c5/download)
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    HTTP response: 201| +|[00292-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00292-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d37ae67468f9f3fc59664/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d37ab3e750b90a42619d3/download)
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    HTTP response: 201| +|[00293-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00293-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d37b73e750b90a42619f4/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d37b23e750b90a42619eb/download)
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    HTTP response: 201| +|[00294-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00294-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d37be3e750b90a4261a10/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d37ba67468f9f3fc5968b/download)
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    HTTP response: 201| +|[00295-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00295-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d37c63e750b90a4261a20/download)
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    pass[Download](https://api.biosimulations.org/results/677d37c2f8016f90e7cb7d3e/download)
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    HTTP response: 201| +|[00296-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00296-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d37ce67468f9f3fc596be/download)
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    HTTP response: 201| +|[00297-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00297-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d37d63e750b90a4261a48/download)
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    HTTP response: 201| +|[00298-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00298-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00299-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00299-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00300-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00300-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00301-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00301-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d37f43e750b90a4261a99/download)
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    pass[Download](https://api.biosimulations.org/results/677d37f1f8016f90e7cb7dc0/download)
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    HTTP response: 201| +|[00302-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00302-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d37fcf8016f90e7cb7dde/download)
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    pass[Download](https://api.biosimulations.org/results/677d37f867468f9f3fc59731/download)
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    HTTP response: 201| +|[00303-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00303-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3803f8016f90e7cb7df3/download)
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    pass[Download](https://api.biosimulations.org/results/677d37ff67468f9f3fc59743/download)
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    HTTP response: 201| +|[00304-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00304-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d380967468f9f3fc5975b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d38073e750b90a4261ad2/download)
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    HTTP response: 201| +|[00305-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00305-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d381167468f9f3fc59770/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d380d67468f9f3fc59769/download)
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    HTTP response: 201| +|[00306-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00306-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d38173e750b90a4261b02/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d381467468f9f3fc5977d/download)
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    HTTP response: 201| +|[00307-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00307-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d381e3e750b90a4261b1b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d381a67468f9f3fc5978d/download)
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    HTTP response: 201| +|[00308-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00308-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d382567468f9f3fc597ad/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d38213e750b90a4261b27/download)
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    HTTP response: 201| +|[00309-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00309-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d382cf8016f90e7cb7e75/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d382867468f9f3fc597b5/download)
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    HTTP response: 201| +|[00310-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00310-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d383267468f9f3fc597d0/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d382ff8016f90e7cb7e7d/download)
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    HTTP response: 201| +|[00311-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00311-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d38383e750b90a4261b80/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d38363e750b90a4261b72/download)
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    HTTP response: 201| +|[00312-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00312-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d383f3e750b90a4261b94/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d383cf8016f90e7cb7e9f/download)
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    HTTP response: 201| +|[00313-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00313-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3846f8016f90e7cb7ec0/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d384367468f9f3fc597fb/download)
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    HTTP response: 201| +|[00314-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00314-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d384df8016f90e7cb7edd/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d38493e750b90a4261bba/download)
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    HTTP response: 201| +|[00315-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00315-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3854f8016f90e7cb7eed/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d38513e750b90a4261bcc/download)
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    HTTP response: 201| +|[00316-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00316-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d385a67468f9f3fc59850/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d385767468f9f3fc59846/download)
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    HTTP response: 201| +|[00317-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00317-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d38613e750b90a4261bfe/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d385ef8016f90e7cb7f08/download)
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    HTTP response: 201| +|[00318-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00318-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d38673e750b90a4261c0d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3864f8016f90e7cb7f1a/download)
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    HTTP response: 201| +|[00319-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00319-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d386e67468f9f3fc59894/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d386b3e750b90a4261c17/download)
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    HTTP response: 201| +|[00320-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00320-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3875f8016f90e7cb7f5b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d387267468f9f3fc5989c/download)
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    HTTP response: 201| +|[00321-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00321-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d387b67468f9f3fc598b8/download)
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    HTTP response: 201| +|[00322-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00322-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d388167468f9f3fc598c9/download)
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    HTTP response: 201| +|[00323-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00323-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00324-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00324-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00325-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00325-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00326-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00326-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00327-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00327-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
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    HTTP response: 201| +|[00328-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00328-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00329-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00329-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
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    HTTP response: 201| +|[00330-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00330-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    pass[Download](https://api.biosimulations.org/results/677d38b567468f9f3fc59974/download)
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    HTTP response: 201| +|[00331-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00331-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d38c0f8016f90e7cb803e/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d38bc67468f9f3fc5998c/download)
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    HTTP response: 201| +|[00332-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00332-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d38c667468f9f3fc599b9/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d38c33e750b90a4261d26/download)
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    HTTP response: 201| +|[00333-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00333-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d38cc67468f9f3fc599d8/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d38c9f8016f90e7cb8057/download)
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    HTTP response: 201| +|[00334-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00334-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d38d567468f9f3fc599ed/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d38d2f8016f90e7cb807b/download)
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    HTTP response: 201| +|[00335-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00335-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d38dc67468f9f3fc599fd/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d38d93e750b90a4261d5e/download)
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    HTTP response: 201| +|[00336-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00336-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d38e2f8016f90e7cb80ab/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d38df3e750b90a4261d6a/download)
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    HTTP response: 201| +|[00337-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00337-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d38e967468f9f3fc59a23/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d38e6f8016f90e7cb80b0/download)
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    HTTP response: 201| +|[00338-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00338-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d38ef67468f9f3fc59a3c/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d38ed3e750b90a4261d90/download)
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    HTTP response: 201| +|[00339-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00339-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d38f7f8016f90e7cb80ec/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d38f367468f9f3fc59a4a/download)
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    HTTP response: 201| +|[00340-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00340-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d38fd67468f9f3fc59a67/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d38fa3e750b90a4261db7/download)
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    HTTP response: 201| +|[00341-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00341-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d390567468f9f3fc59a80/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d390167468f9f3fc59a71/download)
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    HTTP response: 201| +|[00342-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00342-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d390c3e750b90a4261df2/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d39093e750b90a4261deb/download)
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    HTTP response: 201| +|[00343-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00343-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d391367468f9f3fc59aa8/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d39103e750b90a4261dfd/download)
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    HTTP response: 201| +|[00344-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00344-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3919f8016f90e7cb8148/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d391667468f9f3fc59ac2/download)
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    HTTP response: 201| +|[00345-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00345-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d39213e750b90a4261e2b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d391e3e750b90a4261e24/download)
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    HTTP response: 201| +|[00346-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00346-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d39293e750b90a4261e39/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d39253e750b90a4261e34/download)
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    HTTP response: 201| +|[00347-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00347-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d392ff8016f90e7cb8183/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d392c3e750b90a4261e4c/download)
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    HTTP response: 201| +|[00348-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00348-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00349-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00349-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00350-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00350-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00351-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00351-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00352-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00352-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00353-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00353-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00354-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00354-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00355-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00355-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00356-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00356-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00357-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00357-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00358-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00358-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
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    HTTP response: 201| +|[00359-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00359-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d39803e750b90a4261f5b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d397c3e750b90a4261f4e/download)
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    HTTP response: 201| +|[00360-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00360-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d39833e750b90a4261f67/download)
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    HTTP response: 201| +|[00361-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00361-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d398c3e750b90a4261f79/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3989f8016f90e7cb828a/download)
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    HTTP response: 201| +|[00362-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00362-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d398f67468f9f3fc59c51/download)
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    HTTP response: 201| +|[00363-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00363-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3999f8016f90e7cb82c6/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d39963e750b90a4261f93/download)
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    HTTP response: 201| +|[00364-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00364-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d39a167468f9f3fc59c93/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d399d67468f9f3fc59c84/download)
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    HTTP response: 201| +|[00365-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00365-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d39a867468f9f3fc59ca2/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d39a567468f9f3fc59c9c/download)
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    HTTP response: 201| +|[00366-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00366-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d39aff8016f90e7cb82fa/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d39ac3e750b90a4261fe0/download)
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    HTTP response: 201| +|[00367-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00367-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d39b53e750b90a4261fff/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d39b3f8016f90e7cb8308/download)
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    HTTP response: 201| +|[00368-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00368-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d39bc3e750b90a426200d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d39b9f8016f90e7cb8318/download)
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    HTTP response: 201| +|[00369-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00369-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d39c53e750b90a4262028/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d39c067468f9f3fc59ced/download)
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    HTTP response: 201| +|[00370-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00370-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d39cc67468f9f3fc59d0d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d39c967468f9f3fc59d06/download)
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    HTTP response: 201| +|[00371-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00371-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d39d3f8016f90e7cb8366/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d39d0f8016f90e7cb8361/download)
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    HTTP response: 201| +|[00372-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00372-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d39daf8016f90e7cb838a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d39d767468f9f3fc59d26/download)
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    HTTP response: 201| +|[00373-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00373-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d39e3f8016f90e7cb839d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d39e03e750b90a4262067/download)
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    HTTP response: 201| +|[00374-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00374-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d39ea67468f9f3fc59d5b/download)
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    HTTP response: 201| +|[00375-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00375-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00376-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00376-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00377-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00377-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00378-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00378-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00379-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00379-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00380-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00380-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    pass[Download](https://api.biosimulations.org/results/677d3a0e3e750b90a4262105/download)
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    HTTP response: 201| +|[00381-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00381-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00382-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00382-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a1e67468f9f3fc59deb/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3a1b3e750b90a4262127/download)
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    HTTP response: 201| +|[00383-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00383-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a243e750b90a4262144/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3a213e750b90a426213b/download)
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    HTTP response: 201| +|[00384-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00384-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a2b3e750b90a426215e/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3a283e750b90a4262152/download)
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    HTTP response: 201| +|[00385-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00385-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a3367468f9f3fc59e34/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3a303e750b90a4262167/download)
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    HTTP response: 201| +|[00386-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00386-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a3af8016f90e7cb84b5/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3a373e750b90a426217d/download)
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    HTTP response: 201| +|[00387-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00387-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a403e750b90a4262198/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3a3df8016f90e7cb84bd/download)
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    HTTP response: 201| +|[00388-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00388-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a463e750b90a42621a7/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3a43f8016f90e7cb84d0/download)
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    HTTP response: 201| +|[00389-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00389-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a4e67468f9f3fc59e86/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3a4af8016f90e7cb84f1/download)
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    HTTP response: 201| +|[00390-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00390-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a55f8016f90e7cb8515/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3a523e750b90a42621c7/download)
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    HTTP response: 201| +|[00391-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00391-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a5b67468f9f3fc59ead/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3a58f8016f90e7cb8526/download)
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    HTTP response: 201| +|[00392-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00392-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a6267468f9f3fc59ec3/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3a5f67468f9f3fc59ebb/download)
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    HTTP response: 201| +|[00393-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00393-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a683e750b90a426220a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3a6567468f9f3fc59ec8/download)
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    HTTP response: 201| +|[00394-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00394-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a6ff8016f90e7cb8578/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3a6b3e750b90a4262213/download)
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    HTTP response: 201| +|[00395-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00395-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a753e750b90a4262231/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3a72f8016f90e7cb8586/download)
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    HTTP response: 201| +|[00396-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00396-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a7cf8016f90e7cb85ab/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3a79f8016f90e7cb85a2/download)
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    HTTP response: 201| +|[00397-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00397-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a82f8016f90e7cb85bf/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3a7ff8016f90e7cb85b2/download)
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    HTTP response: 201| +|[00398-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00398-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a893e750b90a4262277/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3a8667468f9f3fc59f2e/download)
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    HTTP response: 201| +|[00399-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00399-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a903e750b90a426228d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3a8df8016f90e7cb85e3/download)
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    HTTP response: 201| +|[00400-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00400-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a973e750b90a426229e/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3a9467468f9f3fc59f58/download)
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    HTTP response: 201| +|[00401-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00401-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3a9e3e750b90a42622b7/download)
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    HTTP response: 201|
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    HTTP response: 201| +|[00402-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00402-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00403-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00403-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00404-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00404-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    pass[Download](https://api.biosimulations.org/results/677d3aaf3e750b90a42622ef/download)
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    HTTP response: 201| +|[00405-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00405-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00406-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00406-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3ac03e750b90a426231e/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3abd67468f9f3fc59fc4/download)
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    HTTP response: 201| +|[00407-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00407-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3ac6f8016f90e7cb8698/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ac467468f9f3fc59fec/download)
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    HTTP response: 201| +|[00408-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00408-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3acdf8016f90e7cb86a8/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3aca3e750b90a4262335/download)
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    HTTP response: 201| +|[00409-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00409-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3ad43e750b90a426235a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ad1f8016f90e7cb86b1/download)
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    HTTP response: 201| +|[00410-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00410-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3ada3e750b90a426236a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ad867468f9f3fc5a039/download)
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    HTTP response: 201| +|[00411-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00411-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3ae13e750b90a426237f/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3add67468f9f3fc5a052/download)
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    HTTP response: 201| +|[00412-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00412-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3ae83e750b90a4262393/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ae4f8016f90e7cb86e4/download)
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    HTTP response: 201| +|[00413-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00413-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3aeff8016f90e7cb870c/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3aebf8016f90e7cb86f0/download)
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    HTTP response: 201| +|[00414-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00414-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3af567468f9f3fc5a09e/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3af33e750b90a42623ad/download)
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    HTTP response: 201| +|[00415-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00415-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3afdf8016f90e7cb8734/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3af9f8016f90e7cb8725/download)
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    HTTP response: 201| +|[00416-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00416-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3b03f8016f90e7cb874c/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3b003e750b90a42623d9/download)
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    HTTP response: 201| +|[00417-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00417-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3b0af8016f90e7cb8762/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3b073e750b90a42623f0/download)
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    HTTP response: 201| +|[00418-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00418-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3b11f8016f90e7cb8777/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3b0e3e750b90a4262404/download)
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    HTTP response: 201| +|[00419-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00419-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3b18f8016f90e7cb878d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3b1567468f9f3fc5a0f1/download)
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    HTTP response: 201| +|[00420-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00420-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3b1f67468f9f3fc5a11b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3b1cf8016f90e7cb8797/download)
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    HTTP response: 201| +|[00421-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00421-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3b27f8016f90e7cb87b0/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3b23f8016f90e7cb87a8/download)
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    HTTP response: 201| +|[00422-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00422-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3b2e67468f9f3fc5a138/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3b2b3e750b90a426245f/download)
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    HTTP response: 201| +|[00423-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00423-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3b343e750b90a426247b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3b3167468f9f3fc5a146/download)
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    HTTP response: 201| +|[00424-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00424-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3b3c3e750b90a426248e/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3b3867468f9f3fc5a154/download)
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    HTTP response: 201| +|[00425-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00425-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3b43f8016f90e7cb880f/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3b3f67468f9f3fc5a16e/download)
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    HTTP response: 201| +|[00426-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00426-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3b49f8016f90e7cb8825/download)
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    HTTP response: 201| +|[00427-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00427-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00428-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00428-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00429-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00429-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00430-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00430-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00431-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00431-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00432-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00432-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00433-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00433-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3b783e750b90a4262541/download)
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    HTTP response: 201|
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    HTTP response: 201| +|[00434-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00434-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677e71d43e750b90a426a29e/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677e71d1f8016f90e7cc069b/download)
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    HTTP response: 201| +|[00435-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00435-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3b843e750b90a4262569/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3b813e750b90a4262565/download)
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    HTTP response: 201| +|[00436-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00436-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3b8b3e750b90a4262577/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3b8767468f9f3fc5a24b/download)
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    HTTP response: 201| +|[00437-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00437-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3b9167468f9f3fc5a275/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3b8e3e750b90a4262580/download)
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    HTTP response: 201| +|[00438-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00438-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3b9967468f9f3fc5a291/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3b9567468f9f3fc5a278/download)
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    HTTP response: 201| +|[00439-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00439-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3ba0f8016f90e7cb8923/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3b9d67468f9f3fc5a296/download)
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    HTTP response: 201| +|[00440-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00440-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3ba73e750b90a42625c5/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ba3f8016f90e7cb892b/download)
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    HTTP response: 201| +|[00441-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00441-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3bae3e750b90a42625db/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3babf8016f90e7cb893f/download)
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    HTTP response: 201| +|[00442-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00442-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3bb667468f9f3fc5a2ee/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3bb23e750b90a42625e9/download)
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    HTTP response: 201| +|[00443-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00443-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3bbdf8016f90e7cb8981/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3bbaf8016f90e7cb8966/download)
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    HTTP response: 201| +|[00444-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00444-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3bc4f8016f90e7cb8994/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3bc067468f9f3fc5a30c/download)
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    HTTP response: 201| +|[00445-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00445-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3bcb67468f9f3fc5a331/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3bc867468f9f3fc5a323/download)
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    HTTP response: 201| +|[00446-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00446-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3bd2f8016f90e7cb89b0/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3bcf67468f9f3fc5a33d/download)
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    HTTP response: 201| +|[00447-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00447-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3bd8f8016f90e7cb89c9/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3bd53e750b90a426264b/download)
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    HTTP response: 201| +|[00448-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00448-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3bdff8016f90e7cb89df/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3bdc67468f9f3fc5a361/download)
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    HTTP response: 201| +|[00449-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00449-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3be6f8016f90e7cb89f4/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3be3f8016f90e7cb89e9/download)
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    HTTP response: 201| +|[00450-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00450-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3bed3e750b90a42626ae/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3beaf8016f90e7cb89fd/download)
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    HTTP response: 201| +|[00451-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00451-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3bf367468f9f3fc5a39d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3bf067468f9f3fc5a394/download)
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    HTTP response: 201| +|[00452-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00452-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3bfaf8016f90e7cb8a3f/download)
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    HTTP response: 201|
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    HTTP response: 201| +|[00453-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00453-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3c013e750b90a42626de/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3bfe3e750b90a42626d6/download)
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    HTTP response: 201| +|[00454-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00454-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
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    HTTP response: 201| +|[00455-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00455-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
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    HTTP response: 201| +|[00456-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00456-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00457-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00457-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3c1c67468f9f3fc5a40a/download)
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    HTTP response: 201|
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    HTTP response: 201| +|[00458-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00458-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3c263e750b90a4262750/download)
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    HTTP response: 201|
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    HTTP response: 201| +|[00459-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00459-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3c2e3e750b90a4262764/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3c2bf8016f90e7cb8ae1/download)
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    HTTP response: 201| +|[00460-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00460-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3c353e750b90a4262775/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3c323e750b90a426276c/download)
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    HTTP response: 201| +|[00461-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00461-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3c3c3e750b90a4262781/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3c39f8016f90e7cb8b01/download)
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    HTTP response: 201| +|[00462-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00462-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3c43f8016f90e7cb8b1b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3c40f8016f90e7cb8b0a/download)
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    HTTP response: 201| +|[00463-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00463-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3c4b67468f9f3fc5a497/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3c4767468f9f3fc5a48b/download)
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    HTTP response: 201| +|[00464-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00464-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3c52f8016f90e7cb8b50/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3c4f67468f9f3fc5a4a1/download)
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    HTTP response: 201| +|[00465-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00465-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3c59f8016f90e7cb8b5d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3c56f8016f90e7cb8b5a/download)
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    HTTP response: 201| +|[00466-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00466-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3c6067468f9f3fc5a4d5/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3c5d3e750b90a42627dd/download)
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    HTTP response: 201| +|[00467-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00467-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3c6767468f9f3fc5a4f2/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3c6467468f9f3fc5a4e9/download)
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    HTTP response: 201| +|[00468-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00468-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3c6ff8016f90e7cb8b90/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3c6b3e750b90a4262813/download)
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    HTTP response: 201| +|[00469-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00469-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3c76f8016f90e7cb8ba4/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3c72f8016f90e7cb8b99/download)
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    HTTP response: 201| +|[00470-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00470-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3c7d3e750b90a426284b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3c79f8016f90e7cb8bab/download)
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    HTTP response: 201| +|[00471-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00471-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3c843e750b90a426285d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3c8067468f9f3fc5a538/download)
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    HTTP response: 201| +|[00472-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00472-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3c8c3e750b90a4262878/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3c8967468f9f3fc5a551/download)
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    HTTP response: 201| +|[00473-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00473-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3c9767468f9f3fc5a57a/download)
    [Logs](https://api.biosimulations.org/logs/677d3c9767468f9f3fc5a57a?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3c93f8016f90e7cb8bf1/download)
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    HTTP response: 201| +|[00474-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00474-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3ca067468f9f3fc5a58a/download)
    [Logs](https://api.biosimulations.org/logs/677d3ca067468f9f3fc5a58a?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3c9bf8016f90e7cb8bfd/download)
    [Logs](https://api.biosimulations.org/logs/677d3c9bf8016f90e7cb8bfd?includeOutput=true)
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    HTTP response: 201| +|[00475-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00475-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3caa67468f9f3fc5a59b/download)
    [Logs](https://api.biosimulations.org/logs/677d3caa67468f9f3fc5a59b?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ca6f8016f90e7cb8c19/download)
    [Logs](https://api.biosimulations.org/logs/677d3ca6f8016f90e7cb8c19?includeOutput=true)
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    HTTP response: 201| +|[00476-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00476-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3cb2f8016f90e7cb8c35/download)
    [Logs](https://api.biosimulations.org/logs/677d3cb2f8016f90e7cb8c35?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3cae67468f9f3fc5a5a7/download)
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    HTTP response: 201| +|[00477-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00477-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3cb867468f9f3fc5a5be/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3cb5f8016f90e7cb8c46/download)
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    HTTP response: 201| +|[00478-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00478-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3cbf67468f9f3fc5a5d0/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3cbcf8016f90e7cb8c59/download)
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    HTTP response: 201| +|[00479-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00479-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3cc73e750b90a42628fe/download)
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    pass[Download](https://api.biosimulations.org/results/677d3cc367468f9f3fc5a5dd/download)
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    HTTP response: 201| +|[00480-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00480-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ccc3e750b90a426290a/download)
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    HTTP response: 201| +|[00481-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00481-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3cd667468f9f3fc5a607/download)
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    pass[Download](https://api.biosimulations.org/results/677d3cd33e750b90a4262918/download)
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    HTTP response: 201| +|[00482-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00482-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3cdd3e750b90a4262930/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3cdaf8016f90e7cb8cb1/download)
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    HTTP response: 201| +|[00483-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00483-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3ce43e750b90a426293d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ce1f8016f90e7cb8cce/download)
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    HTTP response: 201| +|[00484-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00484-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3cebf8016f90e7cb8ce7/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ce867468f9f3fc5a644/download)
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    HTTP response: 201| +|[00485-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00485-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3cf2f8016f90e7cb8cfe/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3cef3e750b90a4262962/download)
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    HTTP response: 201| +|[00486-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00486-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3cfb3e750b90a426298e/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3cf7f8016f90e7cb8d09/download)
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    HTTP response: 201| +|[00487-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00487-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d0167468f9f3fc5a698/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3cfef8016f90e7cb8d20/download)
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    HTTP response: 201| +|[00488-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00488-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d0a67468f9f3fc5a6a7/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d063e750b90a42629ae/download)
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    HTTP response: 201| +|[00489-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00489-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d1167468f9f3fc5a6c6/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d0ef8016f90e7cb8d4e/download)
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    HTTP response: 201| +|[00490-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00490-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d183e750b90a42629d9/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d15f8016f90e7cb8d6e/download)
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    HTTP response: 201| +|[00491-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00491-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d1f67468f9f3fc5a6e7/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d1c67468f9f3fc5a6db/download)
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    HTTP response: 201| +|[00492-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00492-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d273e750b90a42629f9/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d2367468f9f3fc5a6f4/download)
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    HTTP response: 201| +|[00493-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00493-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d30f8016f90e7cb8dc5/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d2b3e750b90a4262a03/download)
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    HTTP response: 201| +|[00494-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00494-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d38f8016f90e7cb8ddd/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d353e750b90a4262a34/download)
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    HTTP response: 201| +|[00495-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00495-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d4167468f9f3fc5a774/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d3d3e750b90a4262a47/download)
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    HTTP response: 201| +|[00496-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00496-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d493e750b90a4262a65/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d463e750b90a4262a62/download)
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    HTTP response: 201| +|[00497-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00497-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d5067468f9f3fc5a7a3/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d4cf8016f90e7cb8e0c/download)
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    HTTP response: 201| +|[00498-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00498-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d56f8016f90e7cb8e28/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d533e750b90a4262a86/download)
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    HTTP response: 201| +|[00499-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00499-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d5e3e750b90a4262a9c/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d5b67468f9f3fc5a7c1/download)
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    HTTP response: 201| +|[00500-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00500-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d653e750b90a4262ab3/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d6267468f9f3fc5a7cf/download)
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    HTTP response: 201| +|[00501-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00501-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d6cf8016f90e7cb8e6d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d6967468f9f3fc5a7e5/download)
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    HTTP response: 201| +|[00502-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00502-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d743e750b90a4262ad5/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d70f8016f90e7cb8e81/download)
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    HTTP response: 201| +|[00503-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00503-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d7bf8016f90e7cb8e99/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d773e750b90a4262ae5/download)
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    HTTP response: 201| +|[00504-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00504-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d823e750b90a4262b03/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d7f67468f9f3fc5a81d/download)
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    HTTP response: 201| +|[00505-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00505-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d8a3e750b90a4262b1a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d87f8016f90e7cb8ebe/download)
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    HTTP response: 201| +|[00506-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00506-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d9267468f9f3fc5a84b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d8ff8016f90e7cb8ede/download)
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    HTTP response: 201| +|[00507-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00507-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3d9a3e750b90a4262b41/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d9767468f9f3fc5a861/download)
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    HTTP response: 201| +|[00508-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00508-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3da267468f9f3fc5a879/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3d9e67468f9f3fc5a870/download)
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    HTTP response: 201| +|[00509-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00509-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3da9f8016f90e7cb8f1e/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3da567468f9f3fc5a883/download)
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    HTTP response: 201| +|[00510-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00510-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3db467468f9f3fc5a8a9/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3db067468f9f3fc5a8a4/download)
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    HTTP response: 201| +|[00511-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00511-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3dbc67468f9f3fc5a8c0/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3db83e750b90a4262b85/download)
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    HTTP response: 201| +|[00512-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00512-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3dc3f8016f90e7cb8f63/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3dbff8016f90e7cb8f5e/download)
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    HTTP response: 201| +|[00513-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00513-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3dcbf8016f90e7cb8f76/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3dc6f8016f90e7cb8f67/download)
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    HTTP response: 201| +|[00514-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00514-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3dd267468f9f3fc5a902/download)
    [Logs](https://api.biosimulations.org/logs/677d3dd267468f9f3fc5a902?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3dcff8016f90e7cb8f86/download)
    [Logs](https://api.biosimulations.org/logs/677d3dcff8016f90e7cb8f86?includeOutput=true)
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    HTTP response: 201| +|[00515-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00515-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3dd967468f9f3fc5a911/download)
    [Logs](https://api.biosimulations.org/logs/677d3dd967468f9f3fc5a911?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3dd63e750b90a4262bbd/download)
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    HTTP response: 201| +|[00516-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00516-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3de0f8016f90e7cb8fb7/download)
    [Logs](https://api.biosimulations.org/logs/677d3de0f8016f90e7cb8fb7?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ddcf8016f90e7cb8fa6/download)
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    HTTP response: 201| +|[00517-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00517-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3de767468f9f3fc5a945/download)
    [Logs](https://api.biosimulations.org/logs/677d3de767468f9f3fc5a945?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3de4f8016f90e7cb8fbe/download)
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    HTTP response: 201| +|[00518-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00518-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3ded67468f9f3fc5a957/download)
    [Logs](https://api.biosimulations.org/logs/677d3ded67468f9f3fc5a957?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3debf8016f90e7cb8fcf/download)
    [Logs](https://api.biosimulations.org/logs/677d3debf8016f90e7cb8fcf?includeOutput=true)
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    HTTP response: 201| +|[00519-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00519-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3df53e750b90a4262c18/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3df1f8016f90e7cb8fe8/download)
    [Logs](https://api.biosimulations.org/logs/677d3df1f8016f90e7cb8fe8?includeOutput=true)
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    HTTP response: 201| +|[00520-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00520-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3dfc67468f9f3fc5a982/download)
    [Logs](https://api.biosimulations.org/logs/677d3dfc67468f9f3fc5a982?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3df967468f9f3fc5a979/download)
    [Logs](https://api.biosimulations.org/logs/677d3df967468f9f3fc5a979?includeOutput=true)
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    HTTP response: 201| +|[00521-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00521-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3e0267468f9f3fc5a9a5/download)
    [Logs](https://api.biosimulations.org/logs/677d3e0267468f9f3fc5a9a5?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3dff3e750b90a4262c38/download)
    [Logs](https://api.biosimulations.org/logs/677d3dff3e750b90a4262c38?includeOutput=true)
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    HTTP response: 201| +|[00522-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00522-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3e0967468f9f3fc5a9b0/download)
    [Logs](https://api.biosimulations.org/logs/677d3e0967468f9f3fc5a9b0?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3e06f8016f90e7cb9029/download)
    [Logs](https://api.biosimulations.org/logs/677d3e06f8016f90e7cb9029?includeOutput=true)
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    HTTP response: 201| +|[00523-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00523-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3e103e750b90a4262c61/download)
    [Logs](https://api.biosimulations.org/logs/677d3e103e750b90a4262c61?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3e0d67468f9f3fc5a9bf/download)
    [Logs](https://api.biosimulations.org/logs/677d3e0d67468f9f3fc5a9bf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e0d67468f9f3fc5a9bf)

    HTTP response: 201| +|[00524-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00524-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3e17f8016f90e7cb9058/download)
    [Logs](https://api.biosimulations.org/logs/677d3e17f8016f90e7cb9058?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3e143e750b90a4262c6c/download)
    [Logs](https://api.biosimulations.org/logs/677d3e143e750b90a4262c6c?includeOutput=true)
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    HTTP response: 201| +|[00525-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00525-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3e1df8016f90e7cb9073/download)
    [Logs](https://api.biosimulations.org/logs/677d3e1df8016f90e7cb9073?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3e1b3e750b90a4262c7a/download)
    [Logs](https://api.biosimulations.org/logs/677d3e1b3e750b90a4262c7a?includeOutput=true)
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    HTTP response: 201| +|[00526-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00526-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3e243e750b90a4262c9e/download)
    [Logs](https://api.biosimulations.org/logs/677d3e243e750b90a4262c9e?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3e213e750b90a4262c9a/download)
    [Logs](https://api.biosimulations.org/logs/677d3e213e750b90a4262c9a?includeOutput=true)
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    HTTP response: 201| +|[00527-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00527-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3e2b3e750b90a4262cb5/download)
    [Logs](https://api.biosimulations.org/logs/677d3e2b3e750b90a4262cb5?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3e28f8016f90e7cb9093/download)
    [Logs](https://api.biosimulations.org/logs/677d3e28f8016f90e7cb9093?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e28f8016f90e7cb9093)

    HTTP response: 201| +|[00528-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00528-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3e3367468f9f3fc5aa38/download)
    [Logs](https://api.biosimulations.org/logs/677d3e3367468f9f3fc5aa38?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e3367468f9f3fc5aa38)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3e2f67468f9f3fc5aa29/download)
    [Logs](https://api.biosimulations.org/logs/677d3e2f67468f9f3fc5aa29?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e2f67468f9f3fc5aa29)

    HTTP response: 201| +|[00529-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00529-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3e3a67468f9f3fc5aa52/download)
    [Logs](https://api.biosimulations.org/logs/677d3e3a67468f9f3fc5aa52?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e3a67468f9f3fc5aa52)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3e37f8016f90e7cb90b9/download)
    [Logs](https://api.biosimulations.org/logs/677d3e37f8016f90e7cb90b9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e37f8016f90e7cb90b9)

    HTTP response: 201| +|[00530-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00530-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3e423e750b90a4262cfa/download)
    [Logs](https://api.biosimulations.org/logs/677d3e423e750b90a4262cfa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e423e750b90a4262cfa)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3e3ef8016f90e7cb90cf/download)
    [Logs](https://api.biosimulations.org/logs/677d3e3ef8016f90e7cb90cf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e3ef8016f90e7cb90cf)

    HTTP response: 201| +|[00531-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00531-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 - T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3e4867468f9f3fc5aa6d/download)
    [Logs](https://api.biosimulations.org/logs/677d3e4867468f9f3fc5aa6d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e4867468f9f3fc5aa6d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3e45f8016f90e7cb90da/download)
    [Logs](https://api.biosimulations.org/logs/677d3e45f8016f90e7cb90da?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e45f8016f90e7cb90da)

    HTTP response: 201| +|[00532-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00532-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = -1 * S1 + T + X0 + X1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3e4f3e750b90a4262d2e/download)
    [Logs](https://api.biosimulations.org/logs/677d3e4f3e750b90a4262d2e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e4f3e750b90a4262d2e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3e4cf8016f90e7cb90ed/download)
    [Logs](https://api.biosimulations.org/logs/677d3e4cf8016f90e7cb90ed?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e4cf8016f90e7cb90ed)

    HTTP response: 201| +|[00533-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00533-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = k2 + -0.9' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d3e573e750b90a4262d3f/download)
    [Logs](https://api.biosimulations.org/logs/677d3e573e750b90a4262d3f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e573e750b90a4262d3f)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'k2' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d3e53f8016f90e7cb9101/download)
    [Logs](https://api.biosimulations.org/logs/677d3e53f8016f90e7cb9101?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e53f8016f90e7cb9101)

    HTTP response: 201| +|[00534-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00534-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = k2 + -1 * k3 + -0.2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d3e603e750b90a4262d5a/download)
    [Logs](https://api.biosimulations.org/logs/677d3e603e750b90a4262d5a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e603e750b90a4262d5a)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'k2' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d3e5cf8016f90e7cb911f/download)
    [Logs](https://api.biosimulations.org/logs/677d3e5cf8016f90e7cb911f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e5cf8016f90e7cb911f)

    HTTP response: 201| +|[00535-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00535-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3e69f8016f90e7cb913b/download)
    [Logs](https://api.biosimulations.org/logs/677d3e69f8016f90e7cb913b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e69f8016f90e7cb913b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3e6567468f9f3fc5aad0/download)
    [Logs](https://api.biosimulations.org/logs/677d3e6567468f9f3fc5aad0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e6567468f9f3fc5aad0)

    HTTP response: 201| +|[00536-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00536-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = k1 + -0.1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d3e6ff8016f90e7cb915a/download)
    [Logs](https://api.biosimulations.org/logs/677d3e6ff8016f90e7cb915a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e6ff8016f90e7cb915a)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'k1' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d3e6cf8016f90e7cb9149/download)
    [Logs](https://api.biosimulations.org/logs/677d3e6cf8016f90e7cb9149?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e6cf8016f90e7cb9149)

    HTTP response: 201| +|[00537-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00537-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = k2 + -0.2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d3e773e750b90a4262d88/download)
    [Logs](https://api.biosimulations.org/logs/677d3e773e750b90a4262d88?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e773e750b90a4262d88)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'k2' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d3e733e750b90a4262d7f/download)
    [Logs](https://api.biosimulations.org/logs/677d3e733e750b90a4262d7f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e733e750b90a4262d7f)

    HTTP response: 201| +|[00538-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00538-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = k2 + -0.25' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d3e7e67468f9f3fc5ab11/download)
    [Logs](https://api.biosimulations.org/logs/677d3e7e67468f9f3fc5ab11?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e7e67468f9f3fc5ab11)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'k2' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d3e7b3e750b90a4262d8f/download)
    [Logs](https://api.biosimulations.org/logs/677d3e7b3e750b90a4262d8f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e7b3e750b90a4262d8f)

    HTTP response: 201| +|[00539-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00539-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = C + -1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3e8567468f9f3fc5ab2a/download)
    [Logs](https://api.biosimulations.org/logs/677d3e8567468f9f3fc5ab2a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e8567468f9f3fc5ab2a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3e8267468f9f3fc5ab27/download)
    [Logs](https://api.biosimulations.org/logs/677d3e8267468f9f3fc5ab27?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e8267468f9f3fc5ab27)

    HTTP response: 201| +|[00540-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00540-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = C + -1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3e8d67468f9f3fc5ab3f/download)
    [Logs](https://api.biosimulations.org/logs/677d3e8d67468f9f3fc5ab3f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e8d67468f9f3fc5ab3f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3e893e750b90a4262db3/download)
    [Logs](https://api.biosimulations.org/logs/677d3e893e750b90a4262db3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e893e750b90a4262db3)

    HTTP response: 201| +|[00541-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00541-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = C + -1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3e9467468f9f3fc5ab5e/download)
    [Logs](https://api.biosimulations.org/logs/677d3e9467468f9f3fc5ab5e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e9467468f9f3fc5ab5e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3e913e750b90a4262dd3/download)
    [Logs](https://api.biosimulations.org/logs/677d3e913e750b90a4262dd3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e913e750b90a4262dd3)

    HTTP response: 201| +|[00542-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00542-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = C + -1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3e9b67468f9f3fc5ab69/download)
    [Logs](https://api.biosimulations.org/logs/677d3e9b67468f9f3fc5ab69?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e9b67468f9f3fc5ab69)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3e98f8016f90e7cb91b7/download)
    [Logs](https://api.biosimulations.org/logs/677d3e98f8016f90e7cb91b7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e98f8016f90e7cb91b7)

    HTTP response: 201| +|[00543-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00543-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3ea267468f9f3fc5ab87/download)
    [Logs](https://api.biosimulations.org/logs/677d3ea267468f9f3fc5ab87?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ea267468f9f3fc5ab87)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3e9f67468f9f3fc5ab74/download)
    [Logs](https://api.biosimulations.org/logs/677d3e9f67468f9f3fc5ab74?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3e9f67468f9f3fc5ab74)

    HTTP response: 201| +|[00544-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00544-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = C + -1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3ea967468f9f3fc5ab96/download)
    [Logs](https://api.biosimulations.org/logs/677d3ea967468f9f3fc5ab96?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ea967468f9f3fc5ab96)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ea53e750b90a4262e16/download)
    [Logs](https://api.biosimulations.org/logs/677d3ea53e750b90a4262e16?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ea53e750b90a4262e16)

    HTTP response: 201| +|[00545-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00545-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = C + -1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3eb03e750b90a4262e37/download)
    [Logs](https://api.biosimulations.org/logs/677d3eb03e750b90a4262e37?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3eb03e750b90a4262e37)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ead3e750b90a4262e27/download)
    [Logs](https://api.biosimulations.org/logs/677d3ead3e750b90a4262e27?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ead3e750b90a4262e27)

    HTTP response: 201| +|[00546-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00546-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3eb93e750b90a4262e54/download)
    [Logs](https://api.biosimulations.org/logs/677d3eb93e750b90a4262e54?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3eb93e750b90a4262e54)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3eb5f8016f90e7cb921c/download)
    [Logs](https://api.biosimulations.org/logs/677d3eb5f8016f90e7cb921c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3eb5f8016f90e7cb921c)

    HTTP response: 201| +|[00547-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00547-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = C + -2.5' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3ec13e750b90a4262e6e/download)
    [Logs](https://api.biosimulations.org/logs/677d3ec13e750b90a4262e6e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ec13e750b90a4262e6e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ebd3e750b90a4262e69/download)
    [Logs](https://api.biosimulations.org/logs/677d3ebd3e750b90a4262e69?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ebd3e750b90a4262e69)

    HTTP response: 201| +|[00548-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00548-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = C + -0.75' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3ec867468f9f3fc5abe3/download)
    [Logs](https://api.biosimulations.org/logs/677d3ec867468f9f3fc5abe3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ec867468f9f3fc5abe3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ec567468f9f3fc5abdd/download)
    [Logs](https://api.biosimulations.org/logs/677d3ec567468f9f3fc5abdd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ec567468f9f3fc5abdd)

    HTTP response: 201| +|[00549-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00549-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3ecf3e750b90a4262e9a/download)
    [Logs](https://api.biosimulations.org/logs/677d3ecf3e750b90a4262e9a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ecf3e750b90a4262e9a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ecc67468f9f3fc5abf6/download)
    [Logs](https://api.biosimulations.org/logs/677d3ecc67468f9f3fc5abf6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ecc67468f9f3fc5abf6)

    HTTP response: 201| +|[00550-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00550-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3ed73e750b90a4262eb9/download)
    [Logs](https://api.biosimulations.org/logs/677d3ed73e750b90a4262eb9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ed73e750b90a4262eb9)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ed33e750b90a4262ea7/download)
    [Logs](https://api.biosimulations.org/logs/677d3ed33e750b90a4262ea7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ed33e750b90a4262ea7)

    HTTP response: 201| +|[00551-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00551-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3ee067468f9f3fc5ac25/download)
    [Logs](https://api.biosimulations.org/logs/677d3ee067468f9f3fc5ac25?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ee067468f9f3fc5ac25)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3edbf8016f90e7cb9273/download)
    [Logs](https://api.biosimulations.org/logs/677d3edbf8016f90e7cb9273?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3edbf8016f90e7cb9273)

    HTTP response: 201| +|[00552-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00552-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3ee73e750b90a4262ef4/download)
    [Logs](https://api.biosimulations.org/logs/677d3ee73e750b90a4262ef4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ee73e750b90a4262ef4)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ee43e750b90a4262ee4/download)
    [Logs](https://api.biosimulations.org/logs/677d3ee43e750b90a4262ee4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ee43e750b90a4262ee4)

    HTTP response: 201| +|[00553-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00553-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3eee67468f9f3fc5ac58/download)
    [Logs](https://api.biosimulations.org/logs/677d3eee67468f9f3fc5ac58?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3eee67468f9f3fc5ac58)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3eebf8016f90e7cb9297/download)
    [Logs](https://api.biosimulations.org/logs/677d3eebf8016f90e7cb9297?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3eebf8016f90e7cb9297)

    HTTP response: 201| +|[00554-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00554-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3ef5f8016f90e7cb92ae/download)
    [Logs](https://api.biosimulations.org/logs/677d3ef5f8016f90e7cb92ae?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ef5f8016f90e7cb92ae)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ef2f8016f90e7cb92a4/download)
    [Logs](https://api.biosimulations.org/logs/677d3ef2f8016f90e7cb92a4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ef2f8016f90e7cb92a4)

    HTTP response: 201| +|[00555-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00555-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + S2 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3efc3e750b90a4262f18/download)
    [Logs](https://api.biosimulations.org/logs/677d3efc3e750b90a4262f18?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3efc3e750b90a4262f18)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ef967468f9f3fc5ac83/download)
    [Logs](https://api.biosimulations.org/logs/677d3ef967468f9f3fc5ac83?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ef967468f9f3fc5ac83)

    HTTP response: 201| +|[00556-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00556-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = -1 * S1 + S4 + -1 * S5' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3f033e750b90a4262f42/download)
    [Logs](https://api.biosimulations.org/logs/677d3f033e750b90a4262f42?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f033e750b90a4262f42)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3eff3e750b90a4262f30/download)
    [Logs](https://api.biosimulations.org/logs/677d3eff3e750b90a4262f30?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3eff3e750b90a4262f30)

    HTTP response: 201| +|[00557-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00557-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3f0a67468f9f3fc5acb6/download)
    [Logs](https://api.biosimulations.org/logs/677d3f0a67468f9f3fc5acb6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f0a67468f9f3fc5acb6)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3f073e750b90a4262f4a/download)
    [Logs](https://api.biosimulations.org/logs/677d3f073e750b90a4262f4a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f073e750b90a4262f4a)

    HTTP response: 201| +|[00558-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00558-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3f1267468f9f3fc5acc5/download)
    [Logs](https://api.biosimulations.org/logs/677d3f1267468f9f3fc5acc5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f1267468f9f3fc5acc5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3f0f67468f9f3fc5acc1/download)
    [Logs](https://api.biosimulations.org/logs/677d3f0f67468f9f3fc5acc1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f0f67468f9f3fc5acc1)

    HTTP response: 201| +|[00559-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00559-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3f1b3e750b90a4262f85/download)
    [Logs](https://api.biosimulations.org/logs/677d3f1b3e750b90a4262f85?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f1b3e750b90a4262f85)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3f1867468f9f3fc5ace3/download)
    [Logs](https://api.biosimulations.org/logs/677d3f1867468f9f3fc5ace3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f1867468f9f3fc5ace3)

    HTTP response: 201| +|[00560-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00560-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3f22f8016f90e7cb932c/download)
    [Logs](https://api.biosimulations.org/logs/677d3f22f8016f90e7cb932c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f22f8016f90e7cb932c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3f1f67468f9f3fc5ad03/download)
    [Logs](https://api.biosimulations.org/logs/677d3f1f67468f9f3fc5ad03?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f1f67468f9f3fc5ad03)

    HTTP response: 201| +|[00561-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00561-sbml-l2v5.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3f2867468f9f3fc5ad2b/download)
    [Logs](https://api.biosimulations.org/logs/677d3f2867468f9f3fc5ad2b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f2867468f9f3fc5ad2b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3f253e750b90a4262f97/download)
    [Logs](https://api.biosimulations.org/logs/677d3f253e750b90a4262f97?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f253e750b90a4262f97)

    HTTP response: 201| +|[00562-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00562-sbml-l2v5.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3f3067468f9f3fc5ad41/download)
    [Logs](https://api.biosimulations.org/logs/677d3f3067468f9f3fc5ad41?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f3067468f9f3fc5ad41)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3f2d67468f9f3fc5ad36/download)
    [Logs](https://api.biosimulations.org/logs/677d3f2d67468f9f3fc5ad36?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f2d67468f9f3fc5ad36)

    HTTP response: 201| +|[00563-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00563-sbml-l2v5.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3f37f8016f90e7cb936c/download)
    [Logs](https://api.biosimulations.org/logs/677d3f37f8016f90e7cb936c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f37f8016f90e7cb936c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3f34f8016f90e7cb9353/download)
    [Logs](https://api.biosimulations.org/logs/677d3f34f8016f90e7cb9353?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f34f8016f90e7cb9353)

    HTTP response: 201| +|[00564-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00564-sbml-l2v5.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3f3ef8016f90e7cb9377/download)
    [Logs](https://api.biosimulations.org/logs/677d3f3ef8016f90e7cb9377?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f3ef8016f90e7cb9377)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3f3b67468f9f3fc5ad5f/download)
    [Logs](https://api.biosimulations.org/logs/677d3f3b67468f9f3fc5ad5f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f3b67468f9f3fc5ad5f)

    HTTP response: 201| +|[00565-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00565-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3f46f8016f90e7cb9389/download)
    [Logs](https://api.biosimulations.org/logs/677d3f46f8016f90e7cb9389?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f46f8016f90e7cb9389)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3f4267468f9f3fc5ad8c/download)
    [Logs](https://api.biosimulations.org/logs/677d3f4267468f9f3fc5ad8c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f4267468f9f3fc5ad8c)

    HTTP response: 201| +|[00566-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00566-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3f4d67468f9f3fc5adaf/download)
    [Logs](https://api.biosimulations.org/logs/677d3f4d67468f9f3fc5adaf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f4d67468f9f3fc5adaf)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3f4af8016f90e7cb9392/download)
    [Logs](https://api.biosimulations.org/logs/677d3f4af8016f90e7cb9392?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f4af8016f90e7cb9392)

    HTTP response: 201| +|[00567-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00567-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = multiply(k3 + 1, S1) + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3f553e750b90a4263016/download)
    [Logs](https://api.biosimulations.org/logs/677d3f553e750b90a4263016?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f553e750b90a4263016)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3f51f8016f90e7cb93aa/download)
    [Logs](https://api.biosimulations.org/logs/677d3f51f8016f90e7cb93aa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f51f8016f90e7cb93aa)

    HTTP response: 201| +|[00568-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00568-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = -1 * S1 + T + add(X0, X1)' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3f5ef8016f90e7cb93ce/download)
    [Logs](https://api.biosimulations.org/logs/677d3f5ef8016f90e7cb93ce?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f5ef8016f90e7cb93ce)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3f5967468f9f3fc5adce/download)
    [Logs](https://api.biosimulations.org/logs/677d3f5967468f9f3fc5adce?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f5967468f9f3fc5adce)

    HTTP response: 201| +|[00569-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00569-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = subtract(k2, 0.9)' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d3f663e750b90a4263058/download)
    [Logs](https://api.biosimulations.org/logs/677d3f663e750b90a4263058?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f663e750b90a4263058)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'k2' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d3f62f8016f90e7cb93d3/download)
    [Logs](https://api.biosimulations.org/logs/677d3f62f8016f90e7cb93d3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f62f8016f90e7cb93d3)

    HTTP response: 201| +|[00570-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00570-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = subtract(k2, k3) + -0.2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d3f6df8016f90e7cb93e9/download)
    [Logs](https://api.biosimulations.org/logs/677d3f6df8016f90e7cb93e9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f6df8016f90e7cb93e9)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'k2' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d3f6a67468f9f3fc5ae00/download)
    [Logs](https://api.biosimulations.org/logs/677d3f6a67468f9f3fc5ae00?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f6a67468f9f3fc5ae00)

    HTTP response: 201| +|[00571-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00571-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = subtract(multiply(k3 + 1, S1), T)' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3f7567468f9f3fc5ae1c/download)
    [Logs](https://api.biosimulations.org/logs/677d3f7567468f9f3fc5ae1c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f7567468f9f3fc5ae1c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3f7167468f9f3fc5ae10/download)
    [Logs](https://api.biosimulations.org/logs/677d3f7167468f9f3fc5ae10?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f7167468f9f3fc5ae10)

    HTTP response: 201| +|[00572-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00572-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = add(add(X0, X1), T) + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3f7cf8016f90e7cb9417/download)
    [Logs](https://api.biosimulations.org/logs/677d3f7cf8016f90e7cb9417?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f7cf8016f90e7cb9417)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3f783e750b90a426307c/download)
    [Logs](https://api.biosimulations.org/logs/677d3f783e750b90a426307c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f783e750b90a426307c)

    HTTP response: 201| +|[00573-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00573-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * p4 + -1 * p3' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3f83f8016f90e7cb9421/download)
    [Logs](https://api.biosimulations.org/logs/677d3f83f8016f90e7cb9421?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f83f8016f90e7cb9421)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3f8067468f9f3fc5ae2d/download)
    [Logs](https://api.biosimulations.org/logs/677d3f8067468f9f3fc5ae2d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f8067468f9f3fc5ae2d)

    HTTP response: 201| +|[00574-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00574-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = p1 + p2 + p3 + -1 * p4' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3f8af8016f90e7cb943f/download)
    [Logs](https://api.biosimulations.org/logs/677d3f8af8016f90e7cb943f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f8af8016f90e7cb943f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3f873e750b90a42630ae/download)
    [Logs](https://api.biosimulations.org/logs/677d3f873e750b90a42630ae?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f873e750b90a42630ae)

    HTTP response: 201| +|[00575-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00575-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = k2 + -0.9' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d3f923e750b90a42630d2/download)
    [Logs](https://api.biosimulations.org/logs/677d3f923e750b90a42630d2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f923e750b90a42630d2)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'k2' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d3f8e3e750b90a42630c3/download)
    [Logs](https://api.biosimulations.org/logs/677d3f8e3e750b90a42630c3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f8e3e750b90a42630c3)

    HTTP response: 201| +|[00576-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00576-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = p4 + -1 * p1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d3f993e750b90a42630e1/download)
    [Logs](https://api.biosimulations.org/logs/677d3f993e750b90a42630e1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f993e750b90a42630e1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3f9667468f9f3fc5ae70/download)
    [Logs](https://api.biosimulations.org/logs/677d3f9667468f9f3fc5ae70?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f9667468f9f3fc5ae70)

    HTTP response: 201| +|[00577-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00577-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3fa167468f9f3fc5ae9c/download)
    [Logs](https://api.biosimulations.org/logs/677d3fa167468f9f3fc5ae9c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fa167468f9f3fc5ae9c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3f9e3e750b90a42630f2/download)
    [Logs](https://api.biosimulations.org/logs/677d3f9e3e750b90a42630f2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3f9e3e750b90a42630f2)

    HTTP response: 201| +|[00578-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00578-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3fa967468f9f3fc5aeae/download)
    [Logs](https://api.biosimulations.org/logs/677d3fa967468f9f3fc5aeae?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fa967468f9f3fc5aeae)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3fa5f8016f90e7cb9487/download)
    [Logs](https://api.biosimulations.org/logs/677d3fa5f8016f90e7cb9487?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fa5f8016f90e7cb9487)

    HTTP response: 201| +|[00579-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00579-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3faff8016f90e7cb94a6/download)
    [Logs](https://api.biosimulations.org/logs/677d3faff8016f90e7cb94a6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3faff8016f90e7cb94a6)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3fac67468f9f3fc5aeb5/download)
    [Logs](https://api.biosimulations.org/logs/677d3fac67468f9f3fc5aeb5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fac67468f9f3fc5aeb5)

    HTTP response: 201| +|[00580-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00580-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3fb8f8016f90e7cb94b8/download)
    [Logs](https://api.biosimulations.org/logs/677d3fb8f8016f90e7cb94b8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fb8f8016f90e7cb94b8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3fb4f8016f90e7cb94ae/download)
    [Logs](https://api.biosimulations.org/logs/677d3fb4f8016f90e7cb94ae?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fb4f8016f90e7cb94ae)

    HTTP response: 201| +|[00581-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00581-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3fbf67468f9f3fc5aeec/download)
    [Logs](https://api.biosimulations.org/logs/677d3fbf67468f9f3fc5aeec?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fbf67468f9f3fc5aeec)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3fbc3e750b90a4263147/download)
    [Logs](https://api.biosimulations.org/logs/677d3fbc3e750b90a4263147?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fbc3e750b90a4263147)

    HTTP response: 201| +|[00582-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00582-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3fc667468f9f3fc5aefe/download)
    [Logs](https://api.biosimulations.org/logs/677d3fc667468f9f3fc5aefe?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fc667468f9f3fc5aefe)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3fc367468f9f3fc5aefa/download)
    [Logs](https://api.biosimulations.org/logs/677d3fc367468f9f3fc5aefa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fc367468f9f3fc5aefa)

    HTTP response: 201| +|[00583-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00583-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3fcd3e750b90a426318a/download)
    [Logs](https://api.biosimulations.org/logs/677d3fcd3e750b90a426318a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fcd3e750b90a426318a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3fca3e750b90a4263185/download)
    [Logs](https://api.biosimulations.org/logs/677d3fca3e750b90a4263185?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fca3e750b90a4263185)

    HTTP response: 201| +|[00584-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00584-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3fd43e750b90a42631a8/download)
    [Logs](https://api.biosimulations.org/logs/677d3fd43e750b90a42631a8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fd43e750b90a42631a8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3fd0f8016f90e7cb94f2/download)
    [Logs](https://api.biosimulations.org/logs/677d3fd0f8016f90e7cb94f2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fd0f8016f90e7cb94f2)

    HTTP response: 201| +|[00585-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00585-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3fdbf8016f90e7cb950c/download)
    [Logs](https://api.biosimulations.org/logs/677d3fdbf8016f90e7cb950c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fdbf8016f90e7cb950c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3fd7f8016f90e7cb9503/download)
    [Logs](https://api.biosimulations.org/logs/677d3fd7f8016f90e7cb9503?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fd7f8016f90e7cb9503)

    HTTP response: 201| +|[00586-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00586-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3fe2f8016f90e7cb951e/download)
    [Logs](https://api.biosimulations.org/logs/677d3fe2f8016f90e7cb951e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fe2f8016f90e7cb951e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3fdef8016f90e7cb951b/download)
    [Logs](https://api.biosimulations.org/logs/677d3fdef8016f90e7cb951b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fdef8016f90e7cb951b)

    HTTP response: 201| +|[00587-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00587-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3feaf8016f90e7cb953e/download)
    [Logs](https://api.biosimulations.org/logs/677d3feaf8016f90e7cb953e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3feaf8016f90e7cb953e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3fe667468f9f3fc5af4a/download)
    [Logs](https://api.biosimulations.org/logs/677d3fe667468f9f3fc5af4a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fe667468f9f3fc5af4a)

    HTTP response: 201| +|[00588-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00588-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3ff267468f9f3fc5af77/download)
    [Logs](https://api.biosimulations.org/logs/677d3ff267468f9f3fc5af77?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ff267468f9f3fc5af77)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3fef67468f9f3fc5af6c/download)
    [Logs](https://api.biosimulations.org/logs/677d3fef67468f9f3fc5af6c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fef67468f9f3fc5af6c)

    HTTP response: 201| +|[00589-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00589-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3ff9f8016f90e7cb9565/download)
    [Logs](https://api.biosimulations.org/logs/677d3ff9f8016f90e7cb9565?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ff9f8016f90e7cb9565)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ff6f8016f90e7cb9560/download)
    [Logs](https://api.biosimulations.org/logs/677d3ff6f8016f90e7cb9560?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ff6f8016f90e7cb9560)

    HTTP response: 201| +|[00590-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00590-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d3fff67468f9f3fc5af92/download)
    [Logs](https://api.biosimulations.org/logs/677d3fff67468f9f3fc5af92?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3fff67468f9f3fc5af92)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d3ffc67468f9f3fc5af88/download)
    [Logs](https://api.biosimulations.org/logs/677d3ffc67468f9f3fc5af88?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d3ffc67468f9f3fc5af88)

    HTTP response: 201| +|[00591-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00591-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d400767468f9f3fc5afa1/download)
    [Logs](https://api.biosimulations.org/logs/677d400767468f9f3fc5afa1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d400767468f9f3fc5afa1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d40043e750b90a426322e/download)
    [Logs](https://api.biosimulations.org/logs/677d40043e750b90a426322e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40043e750b90a426322e)

    HTTP response: 201| +|[00592-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00592-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d400e67468f9f3fc5afb2/download)
    [Logs](https://api.biosimulations.org/logs/677d400e67468f9f3fc5afb2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d400e67468f9f3fc5afb2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d400b3e750b90a426323f/download)
    [Logs](https://api.biosimulations.org/logs/677d400b3e750b90a426323f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d400b3e750b90a426323f)

    HTTP response: 201| +|[00593-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00593-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d40143e750b90a426326f/download)
    [Logs](https://api.biosimulations.org/logs/677d40143e750b90a426326f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40143e750b90a426326f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4011f8016f90e7cb95b2/download)
    [Logs](https://api.biosimulations.org/logs/677d4011f8016f90e7cb95b2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4011f8016f90e7cb95b2)

    HTTP response: 201| +|[00594-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00594-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d401d67468f9f3fc5afd9/download)
    [Logs](https://api.biosimulations.org/logs/677d401d67468f9f3fc5afd9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d401d67468f9f3fc5afd9)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d401867468f9f3fc5afd1/download)
    [Logs](https://api.biosimulations.org/logs/677d401867468f9f3fc5afd1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d401867468f9f3fc5afd1)

    HTTP response: 201| +|[00595-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00595-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d402667468f9f3fc5aff1/download)
    [Logs](https://api.biosimulations.org/logs/677d402667468f9f3fc5aff1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d402667468f9f3fc5aff1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4021f8016f90e7cb95d9/download)
    [Logs](https://api.biosimulations.org/logs/677d4021f8016f90e7cb95d9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4021f8016f90e7cb95d9)

    HTTP response: 201| +|[00596-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00596-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d402d67468f9f3fc5b008/download)
    [Logs](https://api.biosimulations.org/logs/677d402d67468f9f3fc5b008?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d402d67468f9f3fc5b008)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d402a3e750b90a42632b3/download)
    [Logs](https://api.biosimulations.org/logs/677d402a3e750b90a42632b3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d402a3e750b90a42632b3)

    HTTP response: 201| +|[00597-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00597-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d40343e750b90a42632d2/download)
    [Logs](https://api.biosimulations.org/logs/677d40343e750b90a42632d2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40343e750b90a42632d2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d40303e750b90a42632cc/download)
    [Logs](https://api.biosimulations.org/logs/677d40303e750b90a42632cc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40303e750b90a42632cc)

    HTTP response: 201| +|[00598-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00598-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d403b67468f9f3fc5b02a/download)
    [Logs](https://api.biosimulations.org/logs/677d403b67468f9f3fc5b02a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d403b67468f9f3fc5b02a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d40373e750b90a42632d8/download)
    [Logs](https://api.biosimulations.org/logs/677d40373e750b90a42632d8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40373e750b90a42632d8)

    HTTP response: 201| +|[00599-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00599-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d40423e750b90a42632fe/download)
    [Logs](https://api.biosimulations.org/logs/677d40423e750b90a42632fe?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40423e750b90a42632fe)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d403f67468f9f3fc5b039/download)
    [Logs](https://api.biosimulations.org/logs/677d403f67468f9f3fc5b039?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d403f67468f9f3fc5b039)

    HTTP response: 201| +|[00600-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00600-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4049f8016f90e7cb9639/download)
    [Logs](https://api.biosimulations.org/logs/677d4049f8016f90e7cb9639?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4049f8016f90e7cb9639)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d40463e750b90a4263306/download)
    [Logs](https://api.biosimulations.org/logs/677d40463e750b90a4263306?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40463e750b90a4263306)

    HTTP response: 201| +|[00601-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00601-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4050f8016f90e7cb9640/download)
    [Logs](https://api.biosimulations.org/logs/677d4050f8016f90e7cb9640?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4050f8016f90e7cb9640)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d404c67468f9f3fc5b060/download)
    [Logs](https://api.biosimulations.org/logs/677d404c67468f9f3fc5b060?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d404c67468f9f3fc5b060)

    HTTP response: 201| +|[00602-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00602-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d40573e750b90a4263339/download)
    [Logs](https://api.biosimulations.org/logs/677d40573e750b90a4263339?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40573e750b90a4263339)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d40533e750b90a4263328/download)
    [Logs](https://api.biosimulations.org/logs/677d40533e750b90a4263328?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40533e750b90a4263328)

    HTTP response: 201| +|[00603-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00603-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d405d67468f9f3fc5b0a1/download)
    [Logs](https://api.biosimulations.org/logs/677d405d67468f9f3fc5b0a1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d405d67468f9f3fc5b0a1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d405a67468f9f3fc5b092/download)
    [Logs](https://api.biosimulations.org/logs/677d405a67468f9f3fc5b092?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d405a67468f9f3fc5b092)

    HTTP response: 201| +|[00604-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00604-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4064f8016f90e7cb968a/download)
    [Logs](https://api.biosimulations.org/logs/677d4064f8016f90e7cb968a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4064f8016f90e7cb968a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4061f8016f90e7cb9684/download)
    [Logs](https://api.biosimulations.org/logs/677d4061f8016f90e7cb9684?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4061f8016f90e7cb9684)

    HTTP response: 201| +|[00605-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00605-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d406c3e750b90a4263371/download)
    [Logs](https://api.biosimulations.org/logs/677d406c3e750b90a4263371?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d406c3e750b90a4263371)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d406867468f9f3fc5b0c4/download)
    [Logs](https://api.biosimulations.org/logs/677d406867468f9f3fc5b0c4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d406867468f9f3fc5b0c4)

    HTTP response: 201| +|[00606-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00606-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4073f8016f90e7cb96bd/download)
    [Logs](https://api.biosimulations.org/logs/677d4073f8016f90e7cb96bd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4073f8016f90e7cb96bd)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4070f8016f90e7cb96b1/download)
    [Logs](https://api.biosimulations.org/logs/677d4070f8016f90e7cb96b1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4070f8016f90e7cb96b1)

    HTTP response: 201| +|[00607-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00607-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d407a67468f9f3fc5b0eb/download)
    [Logs](https://api.biosimulations.org/logs/677d407a67468f9f3fc5b0eb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d407a67468f9f3fc5b0eb)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4077f8016f90e7cb96c3/download)
    [Logs](https://api.biosimulations.org/logs/677d4077f8016f90e7cb96c3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4077f8016f90e7cb96c3)

    HTTP response: 201| +|[00608-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00608-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d40813e750b90a42633b8/download)
    [Logs](https://api.biosimulations.org/logs/677d40813e750b90a42633b8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40813e750b90a42633b8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d407ef8016f90e7cb96db/download)
    [Logs](https://api.biosimulations.org/logs/677d407ef8016f90e7cb96db?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d407ef8016f90e7cb96db)

    HTTP response: 201| +|[00609-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00609-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d40893e750b90a42633d3/download)
    [Logs](https://api.biosimulations.org/logs/677d40893e750b90a42633d3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40893e750b90a42633d3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4085f8016f90e7cb96f8/download)
    [Logs](https://api.biosimulations.org/logs/677d4085f8016f90e7cb96f8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4085f8016f90e7cb96f8)

    HTTP response: 201| +|[00610-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00610-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4090f8016f90e7cb9711/download)
    [Logs](https://api.biosimulations.org/logs/677d4090f8016f90e7cb9711?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4090f8016f90e7cb9711)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d408df8016f90e7cb970a/download)
    [Logs](https://api.biosimulations.org/logs/677d408df8016f90e7cb970a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d408df8016f90e7cb970a)

    HTTP response: 201| +|[00611-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00611-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d40963e750b90a42633f7/download)
    [Logs](https://api.biosimulations.org/logs/677d40963e750b90a42633f7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40963e750b90a42633f7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4093f8016f90e7cb971a/download)
    [Logs](https://api.biosimulations.org/logs/677d4093f8016f90e7cb971a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4093f8016f90e7cb971a)

    HTTP response: 201| +|[00612-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00612-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d409df8016f90e7cb973e/download)
    [Logs](https://api.biosimulations.org/logs/677d409df8016f90e7cb973e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d409df8016f90e7cb973e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d409a67468f9f3fc5b148/download)
    [Logs](https://api.biosimulations.org/logs/677d409a67468f9f3fc5b148?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d409a67468f9f3fc5b148)

    HTTP response: 201| +|[00613-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00613-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d40a467468f9f3fc5b163/download)
    [Logs](https://api.biosimulations.org/logs/677d40a467468f9f3fc5b163?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40a467468f9f3fc5b163)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d40a167468f9f3fc5b15a/download)
    [Logs](https://api.biosimulations.org/logs/677d40a167468f9f3fc5b15a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40a167468f9f3fc5b15a)

    HTTP response: 201| +|[00614-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00614-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d40ab67468f9f3fc5b173/download)
    [Logs](https://api.biosimulations.org/logs/677d40ab67468f9f3fc5b173?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40ab67468f9f3fc5b173)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d40a767468f9f3fc5b16e/download)
    [Logs](https://api.biosimulations.org/logs/677d40a767468f9f3fc5b16e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40a767468f9f3fc5b16e)

    HTTP response: 201| +|[00615-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00615-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d40b167468f9f3fc5b19d/download)
    [Logs](https://api.biosimulations.org/logs/677d40b167468f9f3fc5b19d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40b167468f9f3fc5b19d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d40ae3e750b90a4263444/download)
    [Logs](https://api.biosimulations.org/logs/677d40ae3e750b90a4263444?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40ae3e750b90a4263444)

    HTTP response: 201| +|[00616-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00616-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d40b967468f9f3fc5b1ab/download)
    [Logs](https://api.biosimulations.org/logs/677d40b967468f9f3fc5b1ab?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40b967468f9f3fc5b1ab)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d40b53e750b90a4263452/download)
    [Logs](https://api.biosimulations.org/logs/677d40b53e750b90a4263452?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40b53e750b90a4263452)

    HTTP response: 201| +|[00617-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00617-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d40c267468f9f3fc5b1cb/download)
    [Logs](https://api.biosimulations.org/logs/677d40c267468f9f3fc5b1cb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40c267468f9f3fc5b1cb)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d40bc67468f9f3fc5b1b6/download)
    [Logs](https://api.biosimulations.org/logs/677d40bc67468f9f3fc5b1b6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40bc67468f9f3fc5b1b6)

    HTTP response: 201| +|[00618-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00618-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d40c967468f9f3fc5b1dd/download)
    [Logs](https://api.biosimulations.org/logs/677d40c967468f9f3fc5b1dd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40c967468f9f3fc5b1dd)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d40c53e750b90a426347f/download)
    [Logs](https://api.biosimulations.org/logs/677d40c53e750b90a426347f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40c53e750b90a426347f)

    HTTP response: 201| +|[00619-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00619-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d40d067468f9f3fc5b1e8/download)
    [Logs](https://api.biosimulations.org/logs/677d40d067468f9f3fc5b1e8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40d067468f9f3fc5b1e8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d40ccf8016f90e7cb97d8/download)
    [Logs](https://api.biosimulations.org/logs/677d40ccf8016f90e7cb97d8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40ccf8016f90e7cb97d8)

    HTTP response: 201| +|[00620-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00620-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d40d7f8016f90e7cb9818/download)
    [Logs](https://api.biosimulations.org/logs/677d40d7f8016f90e7cb9818?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40d7f8016f90e7cb9818)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d40d43e750b90a426349c/download)
    [Logs](https://api.biosimulations.org/logs/677d40d43e750b90a426349c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40d43e750b90a426349c)

    HTTP response: 201| +|[00621-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00621-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d40ddf8016f90e7cb982d/download)
    [Logs](https://api.biosimulations.org/logs/677d40ddf8016f90e7cb982d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40ddf8016f90e7cb982d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d40da3e750b90a42634b1/download)
    [Logs](https://api.biosimulations.org/logs/677d40da3e750b90a42634b1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40da3e750b90a42634b1)

    HTTP response: 201| +|[00622-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00622-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d40e43e750b90a42634ca/download)
    [Logs](https://api.biosimulations.org/logs/677d40e43e750b90a42634ca?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40e43e750b90a42634ca)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d40e167468f9f3fc5b216/download)
    [Logs](https://api.biosimulations.org/logs/677d40e167468f9f3fc5b216?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40e167468f9f3fc5b216)

    HTTP response: 201| +|[00623-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00623-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d40ebf8016f90e7cb9861/download)
    [Logs](https://api.biosimulations.org/logs/677d40ebf8016f90e7cb9861?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40ebf8016f90e7cb9861)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d40e867468f9f3fc5b21e/download)
    [Logs](https://api.biosimulations.org/logs/677d40e867468f9f3fc5b21e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40e867468f9f3fc5b21e)

    HTTP response: 201| +|[00624-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00624-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d40f2f8016f90e7cb9872/download)
    [Logs](https://api.biosimulations.org/logs/677d40f2f8016f90e7cb9872?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40f2f8016f90e7cb9872)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d40ef3e750b90a42634f2/download)
    [Logs](https://api.biosimulations.org/logs/677d40ef3e750b90a42634f2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40ef3e750b90a42634f2)

    HTTP response: 201| +|[00625-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00625-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d40f9f8016f90e7cb988b/download)
    [Logs](https://api.biosimulations.org/logs/677d40f9f8016f90e7cb988b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40f9f8016f90e7cb988b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d40f6f8016f90e7cb987a/download)
    [Logs](https://api.biosimulations.org/logs/677d40f6f8016f90e7cb987a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40f6f8016f90e7cb987a)

    HTTP response: 201| +|[00626-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00626-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4100f8016f90e7cb989a/download)
    [Logs](https://api.biosimulations.org/logs/677d4100f8016f90e7cb989a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4100f8016f90e7cb989a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d40fd3e750b90a426351a/download)
    [Logs](https://api.biosimulations.org/logs/677d40fd3e750b90a426351a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d40fd3e750b90a426351a)

    HTTP response: 201| +|[00627-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00627-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d410767468f9f3fc5b27b/download)
    [Logs](https://api.biosimulations.org/logs/677d410767468f9f3fc5b27b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d410767468f9f3fc5b27b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d410467468f9f3fc5b276/download)
    [Logs](https://api.biosimulations.org/logs/677d410467468f9f3fc5b276?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d410467468f9f3fc5b276)

    HTTP response: 201| +|[00628-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00628-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d410ef8016f90e7cb98c8/download)
    [Logs](https://api.biosimulations.org/logs/677d410ef8016f90e7cb98c8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d410ef8016f90e7cb98c8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d410b3e750b90a4263540/download)
    [Logs](https://api.biosimulations.org/logs/677d410b3e750b90a4263540?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d410b3e750b90a4263540)

    HTTP response: 201| +|[00629-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00629-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d41153e750b90a426355e/download)
    [Logs](https://api.biosimulations.org/logs/677d41153e750b90a426355e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41153e750b90a426355e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d41123e750b90a4263554/download)
    [Logs](https://api.biosimulations.org/logs/677d41123e750b90a4263554?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41123e750b90a4263554)

    HTTP response: 201| +|[00630-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00630-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d411c3e750b90a4263571/download)
    [Logs](https://api.biosimulations.org/logs/677d411c3e750b90a4263571?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d411c3e750b90a4263571)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d411967468f9f3fc5b2ba/download)
    [Logs](https://api.biosimulations.org/logs/677d411967468f9f3fc5b2ba?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d411967468f9f3fc5b2ba)

    HTTP response: 201| +|[00631-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00631-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4123f8016f90e7cb9903/download)
    [Logs](https://api.biosimulations.org/logs/677d4123f8016f90e7cb9903?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4123f8016f90e7cb9903)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d412067468f9f3fc5b2cd/download)
    [Logs](https://api.biosimulations.org/logs/677d412067468f9f3fc5b2cd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d412067468f9f3fc5b2cd)

    HTTP response: 201| +|[00632-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00632-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d412af8016f90e7cb9914/download)
    [Logs](https://api.biosimulations.org/logs/677d412af8016f90e7cb9914?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d412af8016f90e7cb9914)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4127f8016f90e7cb9909/download)
    [Logs](https://api.biosimulations.org/logs/677d4127f8016f90e7cb9909?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4127f8016f90e7cb9909)

    HTTP response: 201| +|[00633-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00633-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d41313e750b90a42635b5/download)
    [Logs](https://api.biosimulations.org/logs/677d41313e750b90a42635b5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41313e750b90a42635b5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d412e67468f9f3fc5b2fe/download)
    [Logs](https://api.biosimulations.org/logs/677d412e67468f9f3fc5b2fe?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d412e67468f9f3fc5b2fe)

    HTTP response: 201| +|[00634-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00634-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4138f8016f90e7cb9942/download)
    [Logs](https://api.biosimulations.org/logs/677d4138f8016f90e7cb9942?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4138f8016f90e7cb9942)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4135f8016f90e7cb9937/download)
    [Logs](https://api.biosimulations.org/logs/677d4135f8016f90e7cb9937?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4135f8016f90e7cb9937)

    HTTP response: 201| +|[00635-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00635-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d414267468f9f3fc5b33f/download)
    [Logs](https://api.biosimulations.org/logs/677d414267468f9f3fc5b33f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d414267468f9f3fc5b33f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d413d67468f9f3fc5b333/download)
    [Logs](https://api.biosimulations.org/logs/677d413d67468f9f3fc5b333?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d413d67468f9f3fc5b333)

    HTTP response: 201| +|[00636-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00636-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d414967468f9f3fc5b35c/download)
    [Logs](https://api.biosimulations.org/logs/677d414967468f9f3fc5b35c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d414967468f9f3fc5b35c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d41463e750b90a42635e7/download)
    [Logs](https://api.biosimulations.org/logs/677d41463e750b90a42635e7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41463e750b90a42635e7)

    HTTP response: 201| +|[00637-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00637-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d41503e750b90a4263603/download)
    [Logs](https://api.biosimulations.org/logs/677d41503e750b90a4263603?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41503e750b90a4263603)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d414cf8016f90e7cb996f/download)
    [Logs](https://api.biosimulations.org/logs/677d414cf8016f90e7cb996f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d414cf8016f90e7cb996f)

    HTTP response: 201| +|[00638-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00638-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4157f8016f90e7cb998c/download)
    [Logs](https://api.biosimulations.org/logs/677d4157f8016f90e7cb998c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4157f8016f90e7cb998c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4154f8016f90e7cb9984/download)
    [Logs](https://api.biosimulations.org/logs/677d4154f8016f90e7cb9984?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4154f8016f90e7cb9984)

    HTTP response: 201| +|[00639-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00639-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d415e67468f9f3fc5b396/download)
    [Logs](https://api.biosimulations.org/logs/677d415e67468f9f3fc5b396?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d415e67468f9f3fc5b396)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d415bf8016f90e7cb999a/download)
    [Logs](https://api.biosimulations.org/logs/677d415bf8016f90e7cb999a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d415bf8016f90e7cb999a)

    HTTP response: 201| +|[00640-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00640-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4166f8016f90e7cb99b1/download)
    [Logs](https://api.biosimulations.org/logs/677d4166f8016f90e7cb99b1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4166f8016f90e7cb99b1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d416267468f9f3fc5b3a3/download)
    [Logs](https://api.biosimulations.org/logs/677d416267468f9f3fc5b3a3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d416267468f9f3fc5b3a3)

    HTTP response: 201| +|[00641-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00641-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d416cf8016f90e7cb99c3/download)
    [Logs](https://api.biosimulations.org/logs/677d416cf8016f90e7cb99c3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d416cf8016f90e7cb99c3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d416967468f9f3fc5b3b5/download)
    [Logs](https://api.biosimulations.org/logs/677d416967468f9f3fc5b3b5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d416967468f9f3fc5b3b5)

    HTTP response: 201| +|[00642-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00642-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4173f8016f90e7cb99e1/download)
    [Logs](https://api.biosimulations.org/logs/677d4173f8016f90e7cb99e1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4173f8016f90e7cb99e1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d41703e750b90a4263671/download)
    [Logs](https://api.biosimulations.org/logs/677d41703e750b90a4263671?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41703e750b90a4263671)

    HTTP response: 201| +|[00643-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00643-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d417af8016f90e7cb99f5/download)
    [Logs](https://api.biosimulations.org/logs/677d417af8016f90e7cb99f5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d417af8016f90e7cb99f5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d417767468f9f3fc5b3d9/download)
    [Logs](https://api.biosimulations.org/logs/677d417767468f9f3fc5b3d9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d417767468f9f3fc5b3d9)

    HTTP response: 201| +|[00644-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00644-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d41823e750b90a42636a3/download)
    [Logs](https://api.biosimulations.org/logs/677d41823e750b90a42636a3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41823e750b90a42636a3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d417ef8016f90e7cb9a0c/download)
    [Logs](https://api.biosimulations.org/logs/677d417ef8016f90e7cb9a0c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d417ef8016f90e7cb9a0c)

    HTTP response: 201| +|[00645-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00645-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d41883e750b90a42636ac/download)
    [Logs](https://api.biosimulations.org/logs/677d41883e750b90a42636ac?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41883e750b90a42636ac)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4185f8016f90e7cb9a2a/download)
    [Logs](https://api.biosimulations.org/logs/677d4185f8016f90e7cb9a2a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4185f8016f90e7cb9a2a)

    HTTP response: 201| +|[00646-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00646-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4190f8016f90e7cb9a3e/download)
    [Logs](https://api.biosimulations.org/logs/677d4190f8016f90e7cb9a3e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4190f8016f90e7cb9a3e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d418d3e750b90a42636c1/download)
    [Logs](https://api.biosimulations.org/logs/677d418d3e750b90a42636c1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d418d3e750b90a42636c1)

    HTTP response: 201| +|[00647-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00647-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d419b67468f9f3fc5b435/download)
    [Logs](https://api.biosimulations.org/logs/677d419b67468f9f3fc5b435?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d419b67468f9f3fc5b435)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d419567468f9f3fc5b428/download)
    [Logs](https://api.biosimulations.org/logs/677d419567468f9f3fc5b428?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d419567468f9f3fc5b428)

    HTTP response: 201| +|[00648-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00648-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d41a2f8016f90e7cb9a7d/download)
    [Logs](https://api.biosimulations.org/logs/677d41a2f8016f90e7cb9a7d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41a2f8016f90e7cb9a7d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d419ff8016f90e7cb9a75/download)
    [Logs](https://api.biosimulations.org/logs/677d419ff8016f90e7cb9a75?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d419ff8016f90e7cb9a75)

    HTTP response: 201| +|[00649-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00649-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d41a967468f9f3fc5b45d/download)
    [Logs](https://api.biosimulations.org/logs/677d41a967468f9f3fc5b45d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41a967468f9f3fc5b45d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d41a6f8016f90e7cb9a8a/download)
    [Logs](https://api.biosimulations.org/logs/677d41a6f8016f90e7cb9a8a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41a6f8016f90e7cb9a8a)

    HTTP response: 201| +|[00650-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00650-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d41b0f8016f90e7cb9aa1/download)
    [Logs](https://api.biosimulations.org/logs/677d41b0f8016f90e7cb9aa1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41b0f8016f90e7cb9aa1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d41ad3e750b90a426372e/download)
    [Logs](https://api.biosimulations.org/logs/677d41ad3e750b90a426372e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41ad3e750b90a426372e)

    HTTP response: 201| +|[00651-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00651-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d41b73e750b90a426374e/download)
    [Logs](https://api.biosimulations.org/logs/677d41b73e750b90a426374e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41b73e750b90a426374e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d41b43e750b90a4263740/download)
    [Logs](https://api.biosimulations.org/logs/677d41b43e750b90a4263740?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41b43e750b90a4263740)

    HTTP response: 201| +|[00652-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00652-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d41be3e750b90a4263762/download)
    [Logs](https://api.biosimulations.org/logs/677d41be3e750b90a4263762?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41be3e750b90a4263762)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d41bb67468f9f3fc5b484/download)
    [Logs](https://api.biosimulations.org/logs/677d41bb67468f9f3fc5b484?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41bb67468f9f3fc5b484)

    HTTP response: 201| +|[00653-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00653-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d41c6f8016f90e7cb9ae6/download)
    [Logs](https://api.biosimulations.org/logs/677d41c6f8016f90e7cb9ae6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41c6f8016f90e7cb9ae6)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d41c33e750b90a426376e/download)
    [Logs](https://api.biosimulations.org/logs/677d41c33e750b90a426376e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41c33e750b90a426376e)

    HTTP response: 201| +|[00654-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00654-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d41cdf8016f90e7cb9afb/download)
    [Logs](https://api.biosimulations.org/logs/677d41cdf8016f90e7cb9afb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41cdf8016f90e7cb9afb)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d41ca67468f9f3fc5b4b8/download)
    [Logs](https://api.biosimulations.org/logs/677d41ca67468f9f3fc5b4b8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41ca67468f9f3fc5b4b8)

    HTTP response: 201| +|[00655-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00655-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d41d467468f9f3fc5b4cd/download)
    [Logs](https://api.biosimulations.org/logs/677d41d467468f9f3fc5b4cd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41d467468f9f3fc5b4cd)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d41d13e750b90a4263796/download)
    [Logs](https://api.biosimulations.org/logs/677d41d13e750b90a4263796?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41d13e750b90a4263796)

    HTTP response: 201| +|[00656-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00656-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d41db67468f9f3fc5b4e3/download)
    [Logs](https://api.biosimulations.org/logs/677d41db67468f9f3fc5b4e3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41db67468f9f3fc5b4e3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d41d83e750b90a42637a7/download)
    [Logs](https://api.biosimulations.org/logs/677d41d83e750b90a42637a7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41d83e750b90a42637a7)

    HTTP response: 201| +|[00657-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00657-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d41e3f8016f90e7cb9b3b/download)
    [Logs](https://api.biosimulations.org/logs/677d41e3f8016f90e7cb9b3b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41e3f8016f90e7cb9b3b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d41e067468f9f3fc5b4ed/download)
    [Logs](https://api.biosimulations.org/logs/677d41e067468f9f3fc5b4ed?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41e067468f9f3fc5b4ed)

    HTTP response: 201| +|[00658-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00658-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = -1 * k1 + S1 + S2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d41eaf8016f90e7cb9b5e/download)
    [Logs](https://api.biosimulations.org/logs/677d41eaf8016f90e7cb9b5e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41eaf8016f90e7cb9b5e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d41e73e750b90a42637da/download)
    [Logs](https://api.biosimulations.org/logs/677d41e73e750b90a42637da?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41e73e750b90a42637da)

    HTTP response: 201| +|[00659-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00659-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = -1 * k1 + S1 + S2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d41f03e750b90a42637f5/download)
    [Logs](https://api.biosimulations.org/logs/677d41f03e750b90a42637f5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41f03e750b90a42637f5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d41edf8016f90e7cb9b68/download)
    [Logs](https://api.biosimulations.org/logs/677d41edf8016f90e7cb9b68?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41edf8016f90e7cb9b68)

    HTTP response: 201| +|[00660-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00660-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = -1 * k1 + S1 + S2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d41f7f8016f90e7cb9b80/download)
    [Logs](https://api.biosimulations.org/logs/677d41f7f8016f90e7cb9b80?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41f7f8016f90e7cb9b80)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d41f4f8016f90e7cb9b79/download)
    [Logs](https://api.biosimulations.org/logs/677d41f4f8016f90e7cb9b79?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41f4f8016f90e7cb9b79)

    HTTP response: 201| +|[00661-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00661-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = -1 * S1 + T + X0 + X1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d41fef8016f90e7cb9b9a/download)
    [Logs](https://api.biosimulations.org/logs/677d41fef8016f90e7cb9b9a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41fef8016f90e7cb9b9a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d41fbf8016f90e7cb9b87/download)
    [Logs](https://api.biosimulations.org/logs/677d41fbf8016f90e7cb9b87?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d41fbf8016f90e7cb9b87)

    HTTP response: 201| +|[00662-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00662-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d4205f8016f90e7cb9bba/download)
    [Logs](https://api.biosimulations.org/logs/677d4205f8016f90e7cb9bba?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4205f8016f90e7cb9bba)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42023e750b90a4263822/download)
    [Logs](https://api.biosimulations.org/logs/677d42023e750b90a4263822?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42023e750b90a4263822)

    HTTP response: 201| +|[00663-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00663-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = k2 + -0.9' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d420b67468f9f3fc5b575/download)
    [Logs](https://api.biosimulations.org/logs/677d420b67468f9f3fc5b575?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d420b67468f9f3fc5b575)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'k2' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d42093e750b90a4263837/download)
    [Logs](https://api.biosimulations.org/logs/677d42093e750b90a4263837?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42093e750b90a4263837)

    HTTP response: 201| +|[00664-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00664-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = k2 + -0.9' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d42143e750b90a426385a/download)
    [Logs](https://api.biosimulations.org/logs/677d42143e750b90a426385a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42143e750b90a426385a)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'k2' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d420ff8016f90e7cb9bcf/download)
    [Logs](https://api.biosimulations.org/logs/677d420ff8016f90e7cb9bcf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d420ff8016f90e7cb9bcf)

    HTTP response: 201| +|[00665-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00665-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = -1 * S1 + T + X0 + X1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d421cf8016f90e7cb9bf1/download)
    [Logs](https://api.biosimulations.org/logs/677d421cf8016f90e7cb9bf1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d421cf8016f90e7cb9bf1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42183e750b90a4263867/download)
    [Logs](https://api.biosimulations.org/logs/677d42183e750b90a4263867?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42183e750b90a4263867)

    HTTP response: 201| +|[00666-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00666-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d422267468f9f3fc5b5c0/download)
    [Logs](https://api.biosimulations.org/logs/677d422267468f9f3fc5b5c0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d422267468f9f3fc5b5c0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d421f67468f9f3fc5b5ba/download)
    [Logs](https://api.biosimulations.org/logs/677d421f67468f9f3fc5b5ba?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d421f67468f9f3fc5b5ba)

    HTTP response: 201| +|[00667-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00667-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d422a67468f9f3fc5b5d2/download)
    [Logs](https://api.biosimulations.org/logs/677d422a67468f9f3fc5b5d2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d422a67468f9f3fc5b5d2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d422767468f9f3fc5b5c8/download)
    [Logs](https://api.biosimulations.org/logs/677d422767468f9f3fc5b5c8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d422767468f9f3fc5b5c8)

    HTTP response: 201| +|[00668-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00668-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d42313e750b90a426389d/download)
    [Logs](https://api.biosimulations.org/logs/677d42313e750b90a426389d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42313e750b90a426389d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d422e67468f9f3fc5b5de/download)
    [Logs](https://api.biosimulations.org/logs/677d422e67468f9f3fc5b5de?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d422e67468f9f3fc5b5de)

    HTTP response: 201| +|[00669-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00669-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d42393e750b90a42638b4/download)
    [Logs](https://api.biosimulations.org/logs/677d42393e750b90a42638b4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42393e750b90a42638b4)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4235f8016f90e7cb9c34/download)
    [Logs](https://api.biosimulations.org/logs/677d4235f8016f90e7cb9c34?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4235f8016f90e7cb9c34)

    HTTP response: 201| +|[00670-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00670-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4240f8016f90e7cb9c54/download)
    [Logs](https://api.biosimulations.org/logs/677d4240f8016f90e7cb9c54?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4240f8016f90e7cb9c54)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d423d3e750b90a42638bb/download)
    [Logs](https://api.biosimulations.org/logs/677d423d3e750b90a42638bb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d423d3e750b90a42638bb)

    HTTP response: 201| +|[00671-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00671-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4247f8016f90e7cb9c6e/download)
    [Logs](https://api.biosimulations.org/logs/677d4247f8016f90e7cb9c6e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4247f8016f90e7cb9c6e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4244f8016f90e7cb9c5f/download)
    [Logs](https://api.biosimulations.org/logs/677d4244f8016f90e7cb9c5f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4244f8016f90e7cb9c5f)

    HTTP response: 201| +|[00672-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00672-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d424e3e750b90a42638e9/download)
    [Logs](https://api.biosimulations.org/logs/677d424e3e750b90a42638e9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d424e3e750b90a42638e9)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d424b67468f9f3fc5b633/download)
    [Logs](https://api.biosimulations.org/logs/677d424b67468f9f3fc5b633?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d424b67468f9f3fc5b633)

    HTTP response: 201| +|[00673-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00673-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d42543e750b90a42638fb/download)
    [Logs](https://api.biosimulations.org/logs/677d42543e750b90a42638fb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42543e750b90a42638fb)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42513e750b90a42638f3/download)
    [Logs](https://api.biosimulations.org/logs/677d42513e750b90a42638f3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42513e750b90a42638f3)

    HTTP response: 201| +|[00674-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00674-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d425b67468f9f3fc5b66a/download)
    [Logs](https://api.biosimulations.org/logs/677d425b67468f9f3fc5b66a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d425b67468f9f3fc5b66a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4258f8016f90e7cb9caf/download)
    [Logs](https://api.biosimulations.org/logs/677d4258f8016f90e7cb9caf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4258f8016f90e7cb9caf)

    HTTP response: 201| +|[00675-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00675-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d426367468f9f3fc5b688/download)
    [Logs](https://api.biosimulations.org/logs/677d426367468f9f3fc5b688?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d426367468f9f3fc5b688)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d425f67468f9f3fc5b671/download)
    [Logs](https://api.biosimulations.org/logs/677d425f67468f9f3fc5b671?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d425f67468f9f3fc5b671)

    HTTP response: 201| +|[00676-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00676-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d426a3e750b90a426393e/download)
    [Logs](https://api.biosimulations.org/logs/677d426a3e750b90a426393e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d426a3e750b90a426393e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42673e750b90a4263926/download)
    [Logs](https://api.biosimulations.org/logs/677d42673e750b90a4263926?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42673e750b90a4263926)

    HTTP response: 201| +|[00677-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00677-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4272f8016f90e7cb9d06/download)
    [Logs](https://api.biosimulations.org/logs/677d4272f8016f90e7cb9d06?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4272f8016f90e7cb9d06)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d426ff8016f90e7cb9cec/download)
    [Logs](https://api.biosimulations.org/logs/677d426ff8016f90e7cb9cec?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d426ff8016f90e7cb9cec)

    HTTP response: 201| +|[00678-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00678-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d427967468f9f3fc5b6c3/download)
    [Logs](https://api.biosimulations.org/logs/677d427967468f9f3fc5b6c3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d427967468f9f3fc5b6c3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42763e750b90a4263956/download)
    [Logs](https://api.biosimulations.org/logs/677d42763e750b90a4263956?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42763e750b90a4263956)

    HTTP response: 201| +|[00679-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00679-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d428067468f9f3fc5b6d7/download)
    [Logs](https://api.biosimulations.org/logs/677d428067468f9f3fc5b6d7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d428067468f9f3fc5b6d7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d427d3e750b90a426396b/download)
    [Logs](https://api.biosimulations.org/logs/677d427d3e750b90a426396b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d427d3e750b90a426396b)

    HTTP response: 201| +|[00680-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00680-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4287f8016f90e7cb9d3c/download)
    [Logs](https://api.biosimulations.org/logs/677d4287f8016f90e7cb9d3c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4287f8016f90e7cb9d3c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42843e750b90a4263979/download)
    [Logs](https://api.biosimulations.org/logs/677d42843e750b90a4263979?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42843e750b90a4263979)

    HTTP response: 201| +|[00681-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00681-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d428e67468f9f3fc5b700/download)
    [Logs](https://api.biosimulations.org/logs/677d428e67468f9f3fc5b700?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d428e67468f9f3fc5b700)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d428b67468f9f3fc5b6f1/download)
    [Logs](https://api.biosimulations.org/logs/677d428b67468f9f3fc5b6f1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d428b67468f9f3fc5b6f1)

    HTTP response: 201| +|[00682-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00682-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4295f8016f90e7cb9d69/download)
    [Logs](https://api.biosimulations.org/logs/677d4295f8016f90e7cb9d69?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4295f8016f90e7cb9d69)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d429167468f9f3fc5b70b/download)
    [Logs](https://api.biosimulations.org/logs/677d429167468f9f3fc5b70b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d429167468f9f3fc5b70b)

    HTTP response: 201| +|[00683-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00683-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d429df8016f90e7cb9d88/download)
    [Logs](https://api.biosimulations.org/logs/677d429df8016f90e7cb9d88?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d429df8016f90e7cb9d88)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42993e750b90a42639b4/download)
    [Logs](https://api.biosimulations.org/logs/677d42993e750b90a42639b4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42993e750b90a42639b4)

    HTTP response: 201| +|[00684-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00684-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d42a367468f9f3fc5b74d/download)
    [Logs](https://api.biosimulations.org/logs/677d42a367468f9f3fc5b74d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42a367468f9f3fc5b74d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42a067468f9f3fc5b745/download)
    [Logs](https://api.biosimulations.org/logs/677d42a067468f9f3fc5b745?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42a067468f9f3fc5b745)

    HTTP response: 201| +|[00685-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00685-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d42aa67468f9f3fc5b76d/download)
    [Logs](https://api.biosimulations.org/logs/677d42aa67468f9f3fc5b76d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42aa67468f9f3fc5b76d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42a767468f9f3fc5b75c/download)
    [Logs](https://api.biosimulations.org/logs/677d42a767468f9f3fc5b75c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42a767468f9f3fc5b75c)

    HTTP response: 201| +|[00686-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00686-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d42b167468f9f3fc5b779/download)
    [Logs](https://api.biosimulations.org/logs/677d42b167468f9f3fc5b779?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42b167468f9f3fc5b779)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42aef8016f90e7cb9db8/download)
    [Logs](https://api.biosimulations.org/logs/677d42aef8016f90e7cb9db8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42aef8016f90e7cb9db8)

    HTTP response: 201| +|[00687-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00687-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d42b8f8016f90e7cb9dda/download)
    [Logs](https://api.biosimulations.org/logs/677d42b8f8016f90e7cb9dda?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42b8f8016f90e7cb9dda)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42b53e750b90a4263a00/download)
    [Logs](https://api.biosimulations.org/logs/677d42b53e750b90a4263a00?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42b53e750b90a4263a00)

    HTTP response: 201| +|[00688-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00688-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d42bf3e750b90a4263a29/download)
    [Logs](https://api.biosimulations.org/logs/677d42bf3e750b90a4263a29?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42bf3e750b90a4263a29)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42bc3e750b90a4263a1e/download)
    [Logs](https://api.biosimulations.org/logs/677d42bc3e750b90a4263a1e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42bc3e750b90a4263a1e)

    HTTP response: 201| +|[00689-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00689-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d42c767468f9f3fc5b7c4/download)
    [Logs](https://api.biosimulations.org/logs/677d42c767468f9f3fc5b7c4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42c767468f9f3fc5b7c4)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42c4f8016f90e7cb9e01/download)
    [Logs](https://api.biosimulations.org/logs/677d42c4f8016f90e7cb9e01?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42c4f8016f90e7cb9e01)

    HTTP response: 201| +|[00690-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00690-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d42cf3e750b90a4263a47/download)
    [Logs](https://api.biosimulations.org/logs/677d42cf3e750b90a4263a47?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42cf3e750b90a4263a47)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42cbf8016f90e7cb9e11/download)
    [Logs](https://api.biosimulations.org/logs/677d42cbf8016f90e7cb9e11?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42cbf8016f90e7cb9e11)

    HTTP response: 201| +|[00691-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00691-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d42d6f8016f90e7cb9e2e/download)
    [Logs](https://api.biosimulations.org/logs/677d42d6f8016f90e7cb9e2e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42d6f8016f90e7cb9e2e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42d23e750b90a4263a57/download)
    [Logs](https://api.biosimulations.org/logs/677d42d23e750b90a4263a57?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42d23e750b90a4263a57)

    HTTP response: 201| +|[00692-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00692-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d42ddf8016f90e7cb9e3e/download)
    [Logs](https://api.biosimulations.org/logs/677d42ddf8016f90e7cb9e3e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42ddf8016f90e7cb9e3e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42daf8016f90e7cb9e39/download)
    [Logs](https://api.biosimulations.org/logs/677d42daf8016f90e7cb9e39?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42daf8016f90e7cb9e39)

    HTTP response: 201| +|[00693-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00693-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d42e4f8016f90e7cb9e52/download)
    [Logs](https://api.biosimulations.org/logs/677d42e4f8016f90e7cb9e52?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42e4f8016f90e7cb9e52)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42e13e750b90a4263a7b/download)
    [Logs](https://api.biosimulations.org/logs/677d42e13e750b90a4263a7b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42e13e750b90a4263a7b)

    HTTP response: 201| +|[00694-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00694-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d42eaf8016f90e7cb9e5d/download)
    [Logs](https://api.biosimulations.org/logs/677d42eaf8016f90e7cb9e5d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42eaf8016f90e7cb9e5d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42e73e750b90a4263a91/download)
    [Logs](https://api.biosimulations.org/logs/677d42e73e750b90a4263a91?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42e73e750b90a4263a91)

    HTTP response: 201| +|[00695-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00695-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d42f03e750b90a4263ab7/download)
    [Logs](https://api.biosimulations.org/logs/677d42f03e750b90a4263ab7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42f03e750b90a4263ab7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42ed3e750b90a4263aa4/download)
    [Logs](https://api.biosimulations.org/logs/677d42ed3e750b90a4263aa4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42ed3e750b90a4263aa4)

    HTTP response: 201| +|[00696-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00696-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d42f967468f9f3fc5b87d/download)
    [Logs](https://api.biosimulations.org/logs/677d42f967468f9f3fc5b87d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42f967468f9f3fc5b87d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42f53e750b90a4263abc/download)
    [Logs](https://api.biosimulations.org/logs/677d42f53e750b90a4263abc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42f53e750b90a4263abc)

    HTTP response: 201| +|[00697-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00697-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4300f8016f90e7cb9e9e/download)
    [Logs](https://api.biosimulations.org/logs/677d4300f8016f90e7cb9e9e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4300f8016f90e7cb9e9e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d42fdf8016f90e7cb9e8f/download)
    [Logs](https://api.biosimulations.org/logs/677d42fdf8016f90e7cb9e8f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d42fdf8016f90e7cb9e8f)

    HTTP response: 201| +|[00698-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00698-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d430767468f9f3fc5b89c/download)
    [Logs](https://api.biosimulations.org/logs/677d430767468f9f3fc5b89c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d430767468f9f3fc5b89c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d430467468f9f3fc5b899/download)
    [Logs](https://api.biosimulations.org/logs/677d430467468f9f3fc5b899?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d430467468f9f3fc5b899)

    HTTP response: 201| +|[00699-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00699-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d430ef8016f90e7cb9ec5/download)
    [Logs](https://api.biosimulations.org/logs/677d430ef8016f90e7cb9ec5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d430ef8016f90e7cb9ec5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d430af8016f90e7cb9ebb/download)
    [Logs](https://api.biosimulations.org/logs/677d430af8016f90e7cb9ebb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d430af8016f90e7cb9ebb)

    HTTP response: 201| +|[00700-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00700-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d43143e750b90a4263b1d/download)
    [Logs](https://api.biosimulations.org/logs/677d43143e750b90a4263b1d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d43143e750b90a4263b1d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d431167468f9f3fc5b8c3/download)
    [Logs](https://api.biosimulations.org/logs/677d431167468f9f3fc5b8c3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d431167468f9f3fc5b8c3)

    HTTP response: 201| +|[00701-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00701-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d431b67468f9f3fc5b8e7/download)
    [Logs](https://api.biosimulations.org/logs/677d431b67468f9f3fc5b8e7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d431b67468f9f3fc5b8e7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4318f8016f90e7cb9eda/download)
    [Logs](https://api.biosimulations.org/logs/677d4318f8016f90e7cb9eda?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4318f8016f90e7cb9eda)

    HTTP response: 201| +|[00702-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00702-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4322f8016f90e7cb9ef7/download)
    [Logs](https://api.biosimulations.org/logs/677d4322f8016f90e7cb9ef7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4322f8016f90e7cb9ef7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d431ff8016f90e7cb9eee/download)
    [Logs](https://api.biosimulations.org/logs/677d431ff8016f90e7cb9eee?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d431ff8016f90e7cb9eee)

    HTTP response: 201| +|[00703-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00703-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d432867468f9f3fc5b90e/download)
    [Logs](https://api.biosimulations.org/logs/677d432867468f9f3fc5b90e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d432867468f9f3fc5b90e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d43253e750b90a4263b58/download)
    [Logs](https://api.biosimulations.org/logs/677d43253e750b90a4263b58?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d43253e750b90a4263b58)

    HTTP response: 201| +|[00704-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00704-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d432f67468f9f3fc5b928/download)
    [Logs](https://api.biosimulations.org/logs/677d432f67468f9f3fc5b928?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d432f67468f9f3fc5b928)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d432c67468f9f3fc5b921/download)
    [Logs](https://api.biosimulations.org/logs/677d432c67468f9f3fc5b921?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d432c67468f9f3fc5b921)

    HTTP response: 201| +|[00705-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00705-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d433767468f9f3fc5b93d/download)
    [Logs](https://api.biosimulations.org/logs/677d433767468f9f3fc5b93d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d433767468f9f3fc5b93d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d43333e750b90a4263b7f/download)
    [Logs](https://api.biosimulations.org/logs/677d43333e750b90a4263b7f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d43333e750b90a4263b7f)

    HTTP response: 201| +|[00706-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00706-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d433e67468f9f3fc5b95a/download)
    [Logs](https://api.biosimulations.org/logs/677d433e67468f9f3fc5b95a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d433e67468f9f3fc5b95a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d433a67468f9f3fc5b941/download)
    [Logs](https://api.biosimulations.org/logs/677d433a67468f9f3fc5b941?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d433a67468f9f3fc5b941)

    HTTP response: 201| +|[00707-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00707-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4345f8016f90e7cb9f68/download)
    [Logs](https://api.biosimulations.org/logs/677d4345f8016f90e7cb9f68?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4345f8016f90e7cb9f68)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4342f8016f90e7cb9f5f/download)
    [Logs](https://api.biosimulations.org/logs/677d4342f8016f90e7cb9f5f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4342f8016f90e7cb9f5f)

    HTTP response: 201| +|[00708-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00708-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d434e67468f9f3fc5b986/download)
    [Logs](https://api.biosimulations.org/logs/677d434e67468f9f3fc5b986?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d434e67468f9f3fc5b986)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d434b3e750b90a4263bb9/download)
    [Logs](https://api.biosimulations.org/logs/677d434b3e750b90a4263bb9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d434b3e750b90a4263bb9)

    HTTP response: 201| +|[00709-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00709-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d43553e750b90a4263bdb/download)
    [Logs](https://api.biosimulations.org/logs/677d43553e750b90a4263bdb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d43553e750b90a4263bdb)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4351f8016f90e7cb9f8f/download)
    [Logs](https://api.biosimulations.org/logs/677d4351f8016f90e7cb9f8f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4351f8016f90e7cb9f8f)

    HTTP response: 201| +|[00710-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00710-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d435d67468f9f3fc5b9aa/download)
    [Logs](https://api.biosimulations.org/logs/677d435d67468f9f3fc5b9aa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d435d67468f9f3fc5b9aa)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d43593e750b90a4263bf5/download)
    [Logs](https://api.biosimulations.org/logs/677d43593e750b90a4263bf5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d43593e750b90a4263bf5)

    HTTP response: 201| +|[00711-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00711-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d43643e750b90a4263c0a/download)
    [Logs](https://api.biosimulations.org/logs/677d43643e750b90a4263c0a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d43643e750b90a4263c0a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d436167468f9f3fc5b9b7/download)
    [Logs](https://api.biosimulations.org/logs/677d436167468f9f3fc5b9b7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d436167468f9f3fc5b9b7)

    HTTP response: 201| +|[00712-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00712-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d436a3e750b90a4263c2b/download)
    [Logs](https://api.biosimulations.org/logs/677d436a3e750b90a4263c2b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d436a3e750b90a4263c2b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d43673e750b90a4263c11/download)
    [Logs](https://api.biosimulations.org/logs/677d43673e750b90a4263c11?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d43673e750b90a4263c11)

    HTTP response: 201| +|[00713-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00713-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4371f8016f90e7cba007/download)
    [Logs](https://api.biosimulations.org/logs/677d4371f8016f90e7cba007?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4371f8016f90e7cba007)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d436e3e750b90a4263c36/download)
    [Logs](https://api.biosimulations.org/logs/677d436e3e750b90a4263c36?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d436e3e750b90a4263c36)

    HTTP response: 201| +|[00714-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00714-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d43773e750b90a4263c4b/download)
    [Logs](https://api.biosimulations.org/logs/677d43773e750b90a4263c4b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d43773e750b90a4263c4b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4374f8016f90e7cba00f/download)
    [Logs](https://api.biosimulations.org/logs/677d4374f8016f90e7cba00f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4374f8016f90e7cba00f)

    HTTP response: 201| +|[00715-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00715-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d437f3e750b90a4263c60/download)
    [Logs](https://api.biosimulations.org/logs/677d437f3e750b90a4263c60?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d437f3e750b90a4263c60)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d437bf8016f90e7cba020/download)
    [Logs](https://api.biosimulations.org/logs/677d437bf8016f90e7cba020?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d437bf8016f90e7cba020)

    HTTP response: 201| +|[00716-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00716-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4386f8016f90e7cba03b/download)
    [Logs](https://api.biosimulations.org/logs/677d4386f8016f90e7cba03b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4386f8016f90e7cba03b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d43823e750b90a4263c72/download)
    [Logs](https://api.biosimulations.org/logs/677d43823e750b90a4263c72?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d43823e750b90a4263c72)

    HTTP response: 201| +|[00717-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00717-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d438cf8016f90e7cba053/download)
    [Logs](https://api.biosimulations.org/logs/677d438cf8016f90e7cba053?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d438cf8016f90e7cba053)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4389f8016f90e7cba042/download)
    [Logs](https://api.biosimulations.org/logs/677d4389f8016f90e7cba042?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4389f8016f90e7cba042)

    HTTP response: 201| +|[00718-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00718-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d43933e750b90a4263caf/download)
    [Logs](https://api.biosimulations.org/logs/677d43933e750b90a4263caf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d43933e750b90a4263caf)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d439067468f9f3fc5ba41/download)
    [Logs](https://api.biosimulations.org/logs/677d439067468f9f3fc5ba41?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d439067468f9f3fc5ba41)

    HTTP response: 201| +|[00719-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00719-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d439a67468f9f3fc5ba5f/download)
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    pass[Download](https://api.biosimulations.org/results/677d439767468f9f3fc5ba4e/download)
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    HTTP response: 201| +|[00720-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00720-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d43a13e750b90a4263ce7/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d439d67468f9f3fc5ba67/download)
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    HTTP response: 201| +|[00721-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00721-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d43a93e750b90a4263cfa/download)
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    pass[Download](https://api.biosimulations.org/results/677d43a567468f9f3fc5ba87/download)
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    HTTP response: 201| +|[00722-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00722-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00723-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00723-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d43b73e750b90a4263d27/download)
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    HTTP response: 201| +|[00724-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00724-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    pass[Download](https://api.biosimulations.org/results/677d43bb3e750b90a4263d2f/download)
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    HTTP response: 201| +|[00725-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00725-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d43c6f8016f90e7cba0ea/download)
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    pass[Download](https://api.biosimulations.org/results/677d43c33e750b90a4263d4a/download)
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    HTTP response: 201| +|[00726-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00726-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d43cd3e750b90a4263d66/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d43ca3e750b90a4263d5f/download)
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    HTTP response: 201| +|[00727-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00727-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d43d43e750b90a4263d77/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d43d167468f9f3fc5bb06/download)
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    HTTP response: 201| +|[00728-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00728-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d43db3e750b90a4263d8b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d43d83e750b90a4263d80/download)
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    HTTP response: 201| +|[00729-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00729-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d43e267468f9f3fc5bb3a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d43de3e750b90a4263d90/download)
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    HTTP response: 201| +|[00730-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00730-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d43eaf8016f90e7cba150/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d43e63e750b90a4263dbd/download)
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    HTTP response: 201| +|[00731-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00731-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d43f167468f9f3fc5bb61/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d43ee3e750b90a4263dd7/download)
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    HTTP response: 201| +|[00732-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00732-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d43f867468f9f3fc5bb75/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d43f567468f9f3fc5bb6b/download)
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    HTTP response: 201| +|[00733-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00733-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d44003e750b90a4263dfb/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d43fc67468f9f3fc5bb85/download)
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    HTTP response: 201| +|[00734-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00734-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4407f8016f90e7cba194/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d44043e750b90a4263e10/download)
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    HTTP response: 201| +|[00735-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00735-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d440ef8016f90e7cba1aa/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d440b3e750b90a4263e20/download)
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    HTTP response: 201| +|[00736-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00736-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d441667468f9f3fc5bbd4/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d441267468f9f3fc5bbc4/download)
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    HTTP response: 201| +|[00737-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00737-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d441c3e750b90a4263e5d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d441967468f9f3fc5bbde/download)
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    HTTP response: 201| +|[00738-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00738-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4423f8016f90e7cba1e6/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d442067468f9f3fc5bbef/download)
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    HTTP response: 201| +|[00739-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00739-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d442a3e750b90a4263e87/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d442667468f9f3fc5bbfd/download)
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    HTTP response: 201| +|[00740-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00740-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d443167468f9f3fc5bc1a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d442ef8016f90e7cba202/download)
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    HTTP response: 201| +|[00741-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00741-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d443867468f9f3fc5bc2d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d44343e750b90a4263ea7/download)
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    HTTP response: 201| +|[00742-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00742-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d443e3e750b90a4263ec7/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d443b3e750b90a4263ebd/download)
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    HTTP response: 201| +|[00743-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00743-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4445f8016f90e7cba25a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4442f8016f90e7cba24a/download)
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    HTTP response: 201| +|[00744-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00744-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d444b3e750b90a4263eeb/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4448f8016f90e7cba264/download)
    [Logs](https://api.biosimulations.org/logs/677d4448f8016f90e7cba264?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4448f8016f90e7cba264)

    HTTP response: 201| +|[00745-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00745-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4452f8016f90e7cba28f/download)
    [Logs](https://api.biosimulations.org/logs/677d4452f8016f90e7cba28f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4452f8016f90e7cba28f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d444f3e750b90a4263ef5/download)
    [Logs](https://api.biosimulations.org/logs/677d444f3e750b90a4263ef5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d444f3e750b90a4263ef5)

    HTTP response: 201| +|[00746-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00746-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d445967468f9f3fc5bca2/download)
    [Logs](https://api.biosimulations.org/logs/677d445967468f9f3fc5bca2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d445967468f9f3fc5bca2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4456f8016f90e7cba295/download)
    [Logs](https://api.biosimulations.org/logs/677d4456f8016f90e7cba295?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4456f8016f90e7cba295)

    HTTP response: 201| +|[00747-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00747-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d44613e750b90a4263f1e/download)
    [Logs](https://api.biosimulations.org/logs/677d44613e750b90a4263f1e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44613e750b90a4263f1e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d445df8016f90e7cba2aa/download)
    [Logs](https://api.biosimulations.org/logs/677d445df8016f90e7cba2aa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d445df8016f90e7cba2aa)

    HTTP response: 201| +|[00748-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00748-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d44683e750b90a4263f33/download)
    [Logs](https://api.biosimulations.org/logs/677d44683e750b90a4263f33?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44683e750b90a4263f33)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d446467468f9f3fc5bcca/download)
    [Logs](https://api.biosimulations.org/logs/677d446467468f9f3fc5bcca?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d446467468f9f3fc5bcca)

    HTTP response: 201| +|[00749-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00749-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d446f67468f9f3fc5bcef/download)
    [Logs](https://api.biosimulations.org/logs/677d446f67468f9f3fc5bcef?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d446f67468f9f3fc5bcef)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d446cf8016f90e7cba2cf/download)
    [Logs](https://api.biosimulations.org/logs/677d446cf8016f90e7cba2cf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d446cf8016f90e7cba2cf)

    HTTP response: 201| +|[00750-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00750-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d447567468f9f3fc5bcfc/download)
    [Logs](https://api.biosimulations.org/logs/677d447567468f9f3fc5bcfc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d447567468f9f3fc5bcfc)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d44723e750b90a4263f57/download)
    [Logs](https://api.biosimulations.org/logs/677d44723e750b90a4263f57?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44723e750b90a4263f57)

    HTTP response: 201| +|[00751-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00751-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d447c3e750b90a4263f74/download)
    [Logs](https://api.biosimulations.org/logs/677d447c3e750b90a4263f74?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d447c3e750b90a4263f74)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d447967468f9f3fc5bd07/download)
    [Logs](https://api.biosimulations.org/logs/677d447967468f9f3fc5bd07?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d447967468f9f3fc5bd07)

    HTTP response: 201| +|[00752-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00752-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d448467468f9f3fc5bd24/download)
    [Logs](https://api.biosimulations.org/logs/677d448467468f9f3fc5bd24?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d448467468f9f3fc5bd24)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d44803e750b90a4263f7e/download)
    [Logs](https://api.biosimulations.org/logs/677d44803e750b90a4263f7e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44803e750b90a4263f7e)

    HTTP response: 201| +|[00753-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00753-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d448bf8016f90e7cba332/download)
    [Logs](https://api.biosimulations.org/logs/677d448bf8016f90e7cba332?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d448bf8016f90e7cba332)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d448867468f9f3fc5bd36/download)
    [Logs](https://api.biosimulations.org/logs/677d448867468f9f3fc5bd36?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d448867468f9f3fc5bd36)

    HTTP response: 201| +|[00754-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00754-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d44913e750b90a4263fb6/download)
    [Logs](https://api.biosimulations.org/logs/677d44913e750b90a4263fb6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44913e750b90a4263fb6)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d448ef8016f90e7cba33d/download)
    [Logs](https://api.biosimulations.org/logs/677d448ef8016f90e7cba33d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d448ef8016f90e7cba33d)

    HTTP response: 201| +|[00755-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00755-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d449867468f9f3fc5bd6f/download)
    [Logs](https://api.biosimulations.org/logs/677d449867468f9f3fc5bd6f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d449867468f9f3fc5bd6f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d449567468f9f3fc5bd65/download)
    [Logs](https://api.biosimulations.org/logs/677d449567468f9f3fc5bd65?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d449567468f9f3fc5bd65)

    HTTP response: 201| +|[00756-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00756-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d449f67468f9f3fc5bd80/download)
    [Logs](https://api.biosimulations.org/logs/677d449f67468f9f3fc5bd80?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d449f67468f9f3fc5bd80)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d449b3e750b90a4263fce/download)
    [Logs](https://api.biosimulations.org/logs/677d449b3e750b90a4263fce?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d449b3e750b90a4263fce)

    HTTP response: 201| +|[00757-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00757-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d44a53e750b90a4263ffa/download)
    [Logs](https://api.biosimulations.org/logs/677d44a53e750b90a4263ffa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44a53e750b90a4263ffa)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d44a23e750b90a4263fe1/download)
    [Logs](https://api.biosimulations.org/logs/677d44a23e750b90a4263fe1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44a23e750b90a4263fe1)

    HTTP response: 201| +|[00758-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00758-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d44abf8016f90e7cba384/download)
    [Logs](https://api.biosimulations.org/logs/677d44abf8016f90e7cba384?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44abf8016f90e7cba384)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d44a83e750b90a4264001/download)
    [Logs](https://api.biosimulations.org/logs/677d44a83e750b90a4264001?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44a83e750b90a4264001)

    HTTP response: 201| +|[00759-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00759-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d44b2f8016f90e7cba39d/download)
    [Logs](https://api.biosimulations.org/logs/677d44b2f8016f90e7cba39d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44b2f8016f90e7cba39d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d44af3e750b90a426401e/download)
    [Logs](https://api.biosimulations.org/logs/677d44af3e750b90a426401e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44af3e750b90a426401e)

    HTTP response: 201| +|[00760-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00760-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = -1 * S1 + T + add(X0, X1)' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d44b8f8016f90e7cba3b9/download)
    [Logs](https://api.biosimulations.org/logs/677d44b8f8016f90e7cba3b9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44b8f8016f90e7cba3b9)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d44b53e750b90a4264036/download)
    [Logs](https://api.biosimulations.org/logs/677d44b53e750b90a4264036?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44b53e750b90a4264036)

    HTTP response: 201| +|[00761-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00761-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = S1 * add(1, k3) + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d44bf3e750b90a426405a/download)
    [Logs](https://api.biosimulations.org/logs/677d44bf3e750b90a426405a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44bf3e750b90a426405a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d44bc3e750b90a4264047/download)
    [Logs](https://api.biosimulations.org/logs/677d44bc3e750b90a4264047?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44bc3e750b90a4264047)

    HTTP response: 201| +|[00762-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00762-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = subtract(k2, 0.9)' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d44c63e750b90a4264069/download)
    [Logs](https://api.biosimulations.org/logs/677d44c63e750b90a4264069?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44c63e750b90a4264069)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'k2' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d44c2f8016f90e7cba3d6/download)
    [Logs](https://api.biosimulations.org/logs/677d44c2f8016f90e7cba3d6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44c2f8016f90e7cba3d6)

    HTTP response: 201| +|[00763-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00763-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d44cc3e750b90a4264081/download)
    [Logs](https://api.biosimulations.org/logs/677d44cc3e750b90a4264081?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44cc3e750b90a4264081)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d44c967468f9f3fc5be05/download)
    [Logs](https://api.biosimulations.org/logs/677d44c967468f9f3fc5be05?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44c967468f9f3fc5be05)

    HTTP response: 201| +|[00764-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00764-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d44d367468f9f3fc5be1d/download)
    [Logs](https://api.biosimulations.org/logs/677d44d367468f9f3fc5be1d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44d367468f9f3fc5be1d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d44d0f8016f90e7cba400/download)
    [Logs](https://api.biosimulations.org/logs/677d44d0f8016f90e7cba400?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44d0f8016f90e7cba400)

    HTTP response: 201| +|[00765-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00765-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d44dbf8016f90e7cba418/download)
    [Logs](https://api.biosimulations.org/logs/677d44dbf8016f90e7cba418?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44dbf8016f90e7cba418)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d44d767468f9f3fc5be35/download)
    [Logs](https://api.biosimulations.org/logs/677d44d767468f9f3fc5be35?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44d767468f9f3fc5be35)

    HTTP response: 201| +|[00766-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00766-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d44e13e750b90a42640bd/download)
    [Logs](https://api.biosimulations.org/logs/677d44e13e750b90a42640bd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44e13e750b90a42640bd)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d44de67468f9f3fc5be52/download)
    [Logs](https://api.biosimulations.org/logs/677d44de67468f9f3fc5be52?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44de67468f9f3fc5be52)

    HTTP response: 201| +|[00767-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00767-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d44e83e750b90a42640ce/download)
    [Logs](https://api.biosimulations.org/logs/677d44e83e750b90a42640ce?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44e83e750b90a42640ce)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d44e4f8016f90e7cba443/download)
    [Logs](https://api.biosimulations.org/logs/677d44e4f8016f90e7cba443?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44e4f8016f90e7cba443)

    HTTP response: 201| +|[00768-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00768-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d44ef3e750b90a42640de/download)
    [Logs](https://api.biosimulations.org/logs/677d44ef3e750b90a42640de?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44ef3e750b90a42640de)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d44ec67468f9f3fc5be7f/download)
    [Logs](https://api.biosimulations.org/logs/677d44ec67468f9f3fc5be7f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44ec67468f9f3fc5be7f)

    HTTP response: 201| +|[00769-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00769-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d44f5f8016f90e7cba465/download)
    [Logs](https://api.biosimulations.org/logs/677d44f5f8016f90e7cba465?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44f5f8016f90e7cba465)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d44f267468f9f3fc5be97/download)
    [Logs](https://api.biosimulations.org/logs/677d44f267468f9f3fc5be97?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44f267468f9f3fc5be97)

    HTTP response: 201| +|[00770-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00770-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d44fc67468f9f3fc5beab/download)
    [Logs](https://api.biosimulations.org/logs/677d44fc67468f9f3fc5beab?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44fc67468f9f3fc5beab)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d44f93e750b90a42640f7/download)
    [Logs](https://api.biosimulations.org/logs/677d44f93e750b90a42640f7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d44f93e750b90a42640f7)

    HTTP response: 201| +|[00771-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00771-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45033e750b90a426411d/download)
    [Logs](https://api.biosimulations.org/logs/677d45033e750b90a426411d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d45033e750b90a426411d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d45003e750b90a4264116/download)
    [Logs](https://api.biosimulations.org/logs/677d45003e750b90a4264116?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d45003e750b90a4264116)

    HTTP response: 201| +|[00772-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00772-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d450967468f9f3fc5bed9/download)
    [Logs](https://api.biosimulations.org/logs/677d450967468f9f3fc5bed9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d450967468f9f3fc5bed9)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d450667468f9f3fc5bed1/download)
    [Logs](https://api.biosimulations.org/logs/677d450667468f9f3fc5bed1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d450667468f9f3fc5bed1)

    HTTP response: 201| +|[00773-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00773-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d451067468f9f3fc5beef/download)
    [Logs](https://api.biosimulations.org/logs/677d451067468f9f3fc5beef?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d451067468f9f3fc5beef)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d450df8016f90e7cba4ac/download)
    [Logs](https://api.biosimulations.org/logs/677d450df8016f90e7cba4ac?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d450df8016f90e7cba4ac)

    HTTP response: 201| +|[00774-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00774-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45173e750b90a4264169/download)
    [Logs](https://api.biosimulations.org/logs/677d45173e750b90a4264169?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d45173e750b90a4264169)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4514f8016f90e7cba4d8/download)
    [Logs](https://api.biosimulations.org/logs/677d4514f8016f90e7cba4d8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4514f8016f90e7cba4d8)

    HTTP response: 201| +|[00775-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00775-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d451ef8016f90e7cba4f7/download)
    [Logs](https://api.biosimulations.org/logs/677d451ef8016f90e7cba4f7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d451ef8016f90e7cba4f7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d451b67468f9f3fc5bf02/download)
    [Logs](https://api.biosimulations.org/logs/677d451b67468f9f3fc5bf02?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d451b67468f9f3fc5bf02)

    HTTP response: 201| +|[00776-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00776-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45243e750b90a426418e/download)
    [Logs](https://api.biosimulations.org/logs/677d45243e750b90a426418e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d45243e750b90a426418e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d45213e750b90a4264185/download)
    [Logs](https://api.biosimulations.org/logs/677d45213e750b90a4264185?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d45213e750b90a4264185)

    HTTP response: 201| +|[00777-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00777-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = k2 + -2.5' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d452bf8016f90e7cba51a/download)
    [Logs](https://api.biosimulations.org/logs/677d452bf8016f90e7cba51a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d452bf8016f90e7cba51a)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'k2' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d45283e750b90a4264196/download)
    [Logs](https://api.biosimulations.org/logs/677d45283e750b90a4264196?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d45283e750b90a4264196)

    HTTP response: 201| +|[00778-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00778-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = -1 * S1 + T + X0 + X1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d4531f8016f90e7cba531/download)
    [Logs](https://api.biosimulations.org/logs/677d4531f8016f90e7cba531?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4531f8016f90e7cba531)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d452e3e750b90a42641ab/download)
    [Logs](https://api.biosimulations.org/logs/677d452e3e750b90a42641ab?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d452e3e750b90a42641ab)

    HTTP response: 201| +|[00779-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00779-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = -1 * S1 + T + X0 + X1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d453767468f9f3fc5bf68/download)
    [Logs](https://api.biosimulations.org/logs/677d453767468f9f3fc5bf68?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d453767468f9f3fc5bf68)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d45343e750b90a42641c1/download)
    [Logs](https://api.biosimulations.org/logs/677d45343e750b90a42641c1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d45343e750b90a42641c1)

    HTTP response: 201| +|[00780-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00780-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = -1 * S1 + T + X0 + X1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d453f67468f9f3fc5bf85/download)
    [Logs](https://api.biosimulations.org/logs/677d453f67468f9f3fc5bf85?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d453f67468f9f3fc5bf85)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d453b3e750b90a42641d5/download)
    [Logs](https://api.biosimulations.org/logs/677d453b3e750b90a42641d5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d453b3e750b90a42641d5)

    HTTP response: 201| +|[00781-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00781-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45463e750b90a42641f7/download)
    [Logs](https://api.biosimulations.org/logs/677d45463e750b90a42641f7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d45463e750b90a42641f7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d45433e750b90a42641ee/download)
    [Logs](https://api.biosimulations.org/logs/677d45433e750b90a42641ee?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d45433e750b90a42641ee)

    HTTP response: 201| +|[00782-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00782-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d454c67468f9f3fc5bfb5/download)
    [Logs](https://api.biosimulations.org/logs/677d454c67468f9f3fc5bfb5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d454c67468f9f3fc5bfb5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d454967468f9f3fc5bfa8/download)
    [Logs](https://api.biosimulations.org/logs/677d454967468f9f3fc5bfa8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d454967468f9f3fc5bfa8)

    HTTP response: 201| +|[00783-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00783-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45533e750b90a4264244/download)
    [Logs](https://api.biosimulations.org/logs/677d45533e750b90a4264244?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d45533e750b90a4264244)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4550f8016f90e7cba594/download)
    [Logs](https://api.biosimulations.org/logs/677d4550f8016f90e7cba594?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4550f8016f90e7cba594)

    HTTP response: 201| +|[00784-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00784-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4559f8016f90e7cba5bd/download)
    [Logs](https://api.biosimulations.org/logs/677d4559f8016f90e7cba5bd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4559f8016f90e7cba5bd)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d455767468f9f3fc5bfd2/download)
    [Logs](https://api.biosimulations.org/logs/677d455767468f9f3fc5bfd2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d455767468f9f3fc5bfd2)

    HTTP response: 201| +|[00785-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00785-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d456067468f9f3fc5bfee/download)
    [Logs](https://api.biosimulations.org/logs/677d456067468f9f3fc5bfee?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d456067468f9f3fc5bfee)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d455d3e750b90a426427b/download)
    [Logs](https://api.biosimulations.org/logs/677d455d3e750b90a426427b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d455d3e750b90a426427b)

    HTTP response: 201| +|[00786-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00786-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4568f8016f90e7cba5f0/download)
    [Logs](https://api.biosimulations.org/logs/677d4568f8016f90e7cba5f0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4568f8016f90e7cba5f0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d456467468f9f3fc5bffe/download)
    [Logs](https://api.biosimulations.org/logs/677d456467468f9f3fc5bffe?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d456467468f9f3fc5bffe)

    HTTP response: 201| +|[00787-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00787-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d456e3e750b90a42642b0/download)
    [Logs](https://api.biosimulations.org/logs/677d456e3e750b90a42642b0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d456e3e750b90a42642b0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d456b3e750b90a42642a6/download)
    [Logs](https://api.biosimulations.org/logs/677d456b3e750b90a42642a6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d456b3e750b90a42642a6)

    HTTP response: 201| +|[00788-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00788-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d457667468f9f3fc5c02f/download)
    [Logs](https://api.biosimulations.org/logs/677d457667468f9f3fc5c02f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d457667468f9f3fc5c02f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d457367468f9f3fc5c022/download)
    [Logs](https://api.biosimulations.org/logs/677d457367468f9f3fc5c022?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d457367468f9f3fc5c022)

    HTTP response: 201| +|[00789-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00789-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d457df8016f90e7cba633/download)
    [Logs](https://api.biosimulations.org/logs/677d457df8016f90e7cba633?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d457df8016f90e7cba633)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d457af8016f90e7cba62b/download)
    [Logs](https://api.biosimulations.org/logs/677d457af8016f90e7cba62b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d457af8016f90e7cba62b)

    HTTP response: 201| +|[00790-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00790-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4584f8016f90e7cba642/download)
    [Logs](https://api.biosimulations.org/logs/677d4584f8016f90e7cba642?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4584f8016f90e7cba642)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d45803e750b90a42642da/download)
    [Logs](https://api.biosimulations.org/logs/677d45803e750b90a42642da?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d45803e750b90a42642da)

    HTTP response: 201| +|[00791-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00791-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d458c67468f9f3fc5c072/download)
    [Logs](https://api.biosimulations.org/logs/677d458c67468f9f3fc5c072?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d458c67468f9f3fc5c072)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d458867468f9f3fc5c06a/download)
    [Logs](https://api.biosimulations.org/logs/677d458867468f9f3fc5c06a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d458867468f9f3fc5c06a)

    HTTP response: 201| +|[00792-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00792-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d459267468f9f3fc5c082/download)
    [Logs](https://api.biosimulations.org/logs/677d459267468f9f3fc5c082?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d459267468f9f3fc5c082)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d458f3e750b90a4264302/download)
    [Logs](https://api.biosimulations.org/logs/677d458f3e750b90a4264302?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d458f3e750b90a4264302)

    HTTP response: 201| +|[00793-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00793-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d459967468f9f3fc5c09c/download)
    [Logs](https://api.biosimulations.org/logs/677d459967468f9f3fc5c09c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d459967468f9f3fc5c09c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d459667468f9f3fc5c08e/download)
    [Logs](https://api.biosimulations.org/logs/677d459667468f9f3fc5c08e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d459667468f9f3fc5c08e)

    HTTP response: 201| +|[00794-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00794-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45a067468f9f3fc5c0ab/download)
    [Logs](https://api.biosimulations.org/logs/677d45a067468f9f3fc5c0ab?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d45a067468f9f3fc5c0ab)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d459d3e750b90a4264322/download)
    [Logs](https://api.biosimulations.org/logs/677d459d3e750b90a4264322?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d459d3e750b90a4264322)

    HTTP response: 201| +|[00795-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00795-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45a767468f9f3fc5c0b8/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d45a467468f9f3fc5c0b3/download)
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    HTTP response: 201| +|[00796-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00796-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45ae3e750b90a4264354/download)
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    pass[Download](https://api.biosimulations.org/results/677d45ab67468f9f3fc5c0c5/download)
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    HTTP response: 201| +|[00797-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00797-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45b53e750b90a426436e/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d45b2f8016f90e7cba6f4/download)
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    HTTP response: 201| +|[00798-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00798-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45bc3e750b90a426437f/download)
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    pass[Download](https://api.biosimulations.org/results/677d45b9f8016f90e7cba704/download)
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    HTTP response: 201| +|[00799-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00799-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45c33e750b90a4264394/download)
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    pass[Download](https://api.biosimulations.org/results/677d45c0f8016f90e7cba724/download)
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    HTTP response: 201| +|[00800-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00800-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45ca67468f9f3fc5c11f/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d45c73e750b90a426439b/download)
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    HTTP response: 201| +|[00801-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00801-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45d23e750b90a42643c5/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d45cf67468f9f3fc5c128/download)
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    HTTP response: 201| +|[00802-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00802-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45d93e750b90a42643d9/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d45d6f8016f90e7cba762/download)
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    HTTP response: 201| +|[00803-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00803-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45df3e750b90a42643e7/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d45dc67468f9f3fc5c153/download)
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    HTTP response: 201| +|[00804-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00804-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45e53e750b90a4264405/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d45e23e750b90a42643f1/download)
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    HTTP response: 201| +|[00805-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00805-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45ec67468f9f3fc5c190/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d45e93e750b90a426440c/download)
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    HTTP response: 201| +|[00806-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00806-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45f2f8016f90e7cba7a0/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d45ef67468f9f3fc5c197/download)
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    HTTP response: 201| +|[00807-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00807-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45f9f8016f90e7cba7bf/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d45f667468f9f3fc5c1ad/download)
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    HTTP response: 201| +|[00808-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00808-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d45ff67468f9f3fc5c1d0/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d45fc3e750b90a426443e/download)
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    HTTP response: 201| +|[00809-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00809-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46073e750b90a426445c/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46033e750b90a4264457/download)
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    HTTP response: 201| +|[00810-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00810-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d460d3e750b90a426446b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d460a67468f9f3fc5c1f6/download)
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    HTTP response: 201| +|[00811-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00811-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d461367468f9f3fc5c216/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4610f8016f90e7cba80b/download)
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    HTTP response: 201| +|[00812-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00812-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d461cf8016f90e7cba82b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4618f8016f90e7cba819/download)
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    HTTP response: 201| +|[00813-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00813-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46233e750b90a42644a5/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d462067468f9f3fc5c239/download)
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    HTTP response: 201| +|[00814-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00814-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d462a67468f9f3fc5c25a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46263e750b90a42644ba/download)
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    HTTP response: 201| +|[00815-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00815-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d463067468f9f3fc5c265/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d462df8016f90e7cba864/download)
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    HTTP response: 201| +|[00816-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00816-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4636f8016f90e7cba88c/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4633f8016f90e7cba879/download)
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    HTTP response: 201| +|[00817-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00817-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d463cf8016f90e7cba896/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46393e750b90a42644e9/download)
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    HTTP response: 201| +|[00818-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00818-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46433e750b90a426450c/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46403e750b90a42644fe/download)
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    HTTP response: 201| +|[00819-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00819-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d464cf8016f90e7cba8c5/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4649f8016f90e7cba8b9/download)
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    HTTP response: 201| +|[00820-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00820-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46533e750b90a4264549/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d465067468f9f3fc5c2d7/download)
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    HTTP response: 201| +|[00821-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00821-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d465a3e750b90a4264562/download)
    [Logs](https://api.biosimulations.org/logs/677d465a3e750b90a4264562?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d465a3e750b90a4264562)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4657f8016f90e7cba8e6/download)
    [Logs](https://api.biosimulations.org/logs/677d4657f8016f90e7cba8e6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4657f8016f90e7cba8e6)

    HTTP response: 201| +|[00822-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00822-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46613e750b90a4264579/download)
    [Logs](https://api.biosimulations.org/logs/677d46613e750b90a4264579?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46613e750b90a4264579)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d465e67468f9f3fc5c2f6/download)
    [Logs](https://api.biosimulations.org/logs/677d465e67468f9f3fc5c2f6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d465e67468f9f3fc5c2f6)

    HTTP response: 201| +|[00823-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00823-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4667f8016f90e7cba91b/download)
    [Logs](https://api.biosimulations.org/logs/677d4667f8016f90e7cba91b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4667f8016f90e7cba91b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4664f8016f90e7cba90d/download)
    [Logs](https://api.biosimulations.org/logs/677d4664f8016f90e7cba90d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4664f8016f90e7cba90d)

    HTTP response: 201| +|[00824-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00824-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d466e67468f9f3fc5c321/download)
    [Logs](https://api.biosimulations.org/logs/677d466e67468f9f3fc5c321?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d466e67468f9f3fc5c321)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d466a67468f9f3fc5c30e/download)
    [Logs](https://api.biosimulations.org/logs/677d466a67468f9f3fc5c30e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d466a67468f9f3fc5c30e)

    HTTP response: 201| +|[00825-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00825-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d467567468f9f3fc5c332/download)
    [Logs](https://api.biosimulations.org/logs/677d467567468f9f3fc5c332?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d467567468f9f3fc5c332)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4671f8016f90e7cba938/download)
    [Logs](https://api.biosimulations.org/logs/677d4671f8016f90e7cba938?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4671f8016f90e7cba938)

    HTTP response: 201| +|[00826-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00826-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d467bf8016f90e7cba956/download)
    [Logs](https://api.biosimulations.org/logs/677d467bf8016f90e7cba956?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d467bf8016f90e7cba956)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d467867468f9f3fc5c33b/download)
    [Logs](https://api.biosimulations.org/logs/677d467867468f9f3fc5c33b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d467867468f9f3fc5c33b)

    HTTP response: 201| +|[00827-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00827-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46813e750b90a42645db/download)
    [Logs](https://api.biosimulations.org/logs/677d46813e750b90a42645db?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46813e750b90a42645db)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d467e3e750b90a42645cd/download)
    [Logs](https://api.biosimulations.org/logs/677d467e3e750b90a42645cd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d467e3e750b90a42645cd)

    HTTP response: 201| +|[00828-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00828-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46873e750b90a42645ee/download)
    [Logs](https://api.biosimulations.org/logs/677d46873e750b90a42645ee?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46873e750b90a42645ee)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46843e750b90a42645e8/download)
    [Logs](https://api.biosimulations.org/logs/677d46843e750b90a42645e8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46843e750b90a42645e8)

    HTTP response: 201| +|[00829-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00829-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d468ef8016f90e7cba988/download)
    [Logs](https://api.biosimulations.org/logs/677d468ef8016f90e7cba988?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d468ef8016f90e7cba988)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d468af8016f90e7cba980/download)
    [Logs](https://api.biosimulations.org/logs/677d468af8016f90e7cba980?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d468af8016f90e7cba980)

    HTTP response: 201| +|[00830-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00830-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d469467468f9f3fc5c38e/download)
    [Logs](https://api.biosimulations.org/logs/677d469467468f9f3fc5c38e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d469467468f9f3fc5c38e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46913e750b90a4264621/download)
    [Logs](https://api.biosimulations.org/logs/677d46913e750b90a4264621?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46913e750b90a4264621)

    HTTP response: 201| +|[00831-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00831-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d469b67468f9f3fc5c3a9/download)
    [Logs](https://api.biosimulations.org/logs/677d469b67468f9f3fc5c3a9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d469b67468f9f3fc5c3a9)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46983e750b90a4264638/download)
    [Logs](https://api.biosimulations.org/logs/677d46983e750b90a4264638?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46983e750b90a4264638)

    HTTP response: 201| +|[00832-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00832-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46a167468f9f3fc5c3b7/download)
    [Logs](https://api.biosimulations.org/logs/677d46a167468f9f3fc5c3b7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46a167468f9f3fc5c3b7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d469e67468f9f3fc5c3b4/download)
    [Logs](https://api.biosimulations.org/logs/677d469e67468f9f3fc5c3b4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d469e67468f9f3fc5c3b4)

    HTTP response: 201| +|[00833-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00833-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46a867468f9f3fc5c3d0/download)
    [Logs](https://api.biosimulations.org/logs/677d46a867468f9f3fc5c3d0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46a867468f9f3fc5c3d0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46a5f8016f90e7cba9d6/download)
    [Logs](https://api.biosimulations.org/logs/677d46a5f8016f90e7cba9d6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46a5f8016f90e7cba9d6)

    HTTP response: 201| +|[00834-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00834-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46aef8016f90e7cba9f8/download)
    [Logs](https://api.biosimulations.org/logs/677d46aef8016f90e7cba9f8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46aef8016f90e7cba9f8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46abf8016f90e7cba9f3/download)
    [Logs](https://api.biosimulations.org/logs/677d46abf8016f90e7cba9f3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46abf8016f90e7cba9f3)

    HTTP response: 201| +|[00835-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00835-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46b467468f9f3fc5c3f8/download)
    [Logs](https://api.biosimulations.org/logs/677d46b467468f9f3fc5c3f8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46b467468f9f3fc5c3f8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46b2f8016f90e7cbaa10/download)
    [Logs](https://api.biosimulations.org/logs/677d46b2f8016f90e7cbaa10?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46b2f8016f90e7cbaa10)

    HTTP response: 201| +|[00836-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00836-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46bb3e750b90a4264695/download)
    [Logs](https://api.biosimulations.org/logs/677d46bb3e750b90a4264695?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46bb3e750b90a4264695)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46b8f8016f90e7cbaa23/download)
    [Logs](https://api.biosimulations.org/logs/677d46b8f8016f90e7cbaa23?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46b8f8016f90e7cbaa23)

    HTTP response: 201| +|[00837-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00837-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46c23e750b90a42646a8/download)
    [Logs](https://api.biosimulations.org/logs/677d46c23e750b90a42646a8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46c23e750b90a42646a8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46bf3e750b90a42646a3/download)
    [Logs](https://api.biosimulations.org/logs/677d46bf3e750b90a42646a3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46bf3e750b90a42646a3)

    HTTP response: 201| +|[00838-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00838-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46c967468f9f3fc5c43b/download)
    [Logs](https://api.biosimulations.org/logs/677d46c967468f9f3fc5c43b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46c967468f9f3fc5c43b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46c5f8016f90e7cbaa3b/download)
    [Logs](https://api.biosimulations.org/logs/677d46c5f8016f90e7cbaa3b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46c5f8016f90e7cbaa3b)

    HTTP response: 201| +|[00839-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00839-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46cff8016f90e7cbaa53/download)
    [Logs](https://api.biosimulations.org/logs/677d46cff8016f90e7cbaa53?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46cff8016f90e7cbaa53)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46cc3e750b90a42646d4/download)
    [Logs](https://api.biosimulations.org/logs/677d46cc3e750b90a42646d4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46cc3e750b90a42646d4)

    HTTP response: 201| +|[00840-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00840-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46d667468f9f3fc5c46a/download)
    [Logs](https://api.biosimulations.org/logs/677d46d667468f9f3fc5c46a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46d667468f9f3fc5c46a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46d33e750b90a42646e5/download)
    [Logs](https://api.biosimulations.org/logs/677d46d33e750b90a42646e5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46d33e750b90a42646e5)

    HTTP response: 201| +|[00841-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00841-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46dc67468f9f3fc5c48e/download)
    [Logs](https://api.biosimulations.org/logs/677d46dc67468f9f3fc5c48e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46dc67468f9f3fc5c48e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46d93e750b90a4264700/download)
    [Logs](https://api.biosimulations.org/logs/677d46d93e750b90a4264700?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46d93e750b90a4264700)

    HTTP response: 201| +|[00842-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00842-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46e3f8016f90e7cbaa99/download)
    [Logs](https://api.biosimulations.org/logs/677d46e3f8016f90e7cbaa99?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46e3f8016f90e7cbaa99)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46e0f8016f90e7cbaa8b/download)
    [Logs](https://api.biosimulations.org/logs/677d46e0f8016f90e7cbaa8b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46e0f8016f90e7cbaa8b)

    HTTP response: 201| +|[00843-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00843-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46ea3e750b90a4264749/download)
    [Logs](https://api.biosimulations.org/logs/677d46ea3e750b90a4264749?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46ea3e750b90a4264749)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46e73e750b90a4264736/download)
    [Logs](https://api.biosimulations.org/logs/677d46e73e750b90a4264736?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46e73e750b90a4264736)

    HTTP response: 201| +|[00844-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00844-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = kf + -0.75' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d46f0f8016f90e7cbaac6/download)
    [Logs](https://api.biosimulations.org/logs/677d46f0f8016f90e7cbaac6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46f0f8016f90e7cbaac6)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'kf' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d46edf8016f90e7cbaac0/download)
    [Logs](https://api.biosimulations.org/logs/677d46edf8016f90e7cbaac0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46edf8016f90e7cbaac0)

    HTTP response: 201| +|[00845-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00845-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46f767468f9f3fc5c4df/download)
    [Logs](https://api.biosimulations.org/logs/677d46f767468f9f3fc5c4df?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46f767468f9f3fc5c4df)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46f4f8016f90e7cbaad6/download)
    [Logs](https://api.biosimulations.org/logs/677d46f4f8016f90e7cbaad6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46f4f8016f90e7cbaad6)

    HTTP response: 201| +|[00846-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00846-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d46ff67468f9f3fc5c4ec/download)
    [Logs](https://api.biosimulations.org/logs/677d46ff67468f9f3fc5c4ec?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d46ff67468f9f3fc5c4ec)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d46fc3e750b90a4264773/download)
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    HTTP response: 201| +|[00847-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00847-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4706f8016f90e7cbab20/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47033e750b90a4264789/download)
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    HTTP response: 201| +|[00848-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00848-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d470d3e750b90a42647a7/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d470af8016f90e7cbab2a/download)
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    HTTP response: 201| +|[00849-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00849-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d471467468f9f3fc5c527/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47103e750b90a42647ab/download)
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    HTTP response: 201| +|[00850-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00850-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d471a67468f9f3fc5c536/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d471767468f9f3fc5c532/download)
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    HTTP response: 201| +|[00851-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00851-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677e71d9f8016f90e7cc06a1/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677e71d73e750b90a426a2a2/download)
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    HTTP response: 201| +|[00852-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00852-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4728f8016f90e7cbab8b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d472567468f9f3fc5c551/download)
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    HTTP response: 201| +|[00853-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00853-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d472f67468f9f3fc5c576/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d472b67468f9f3fc5c56d/download)
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    HTTP response: 201| +|[00854-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00854-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d47363e750b90a426480f/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4732f8016f90e7cbaba2/download)
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    HTTP response: 201| +|[00855-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00855-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d473cf8016f90e7cbabbc/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47393e750b90a426481a/download)
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    HTTP response: 201| +|[00856-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00856-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d474367468f9f3fc5c5ad/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4740f8016f90e7cbabc9/download)
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    HTTP response: 201| +|[00857-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00857-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d474a67468f9f3fc5c5bf/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4747f8016f90e7cbabe4/download)
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    HTTP response: 201| +|[00858-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00858-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d475267468f9f3fc5c5d5/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d474ef8016f90e7cbabf1/download)
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    HTTP response: 201| +|[00859-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00859-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d475967468f9f3fc5c5f0/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d475567468f9f3fc5c5e8/download)
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    HTTP response: 201| +|[00860-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00860-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d476067468f9f3fc5c601/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d475cf8016f90e7cbac16/download)
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    HTTP response: 201| +|[00861-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00861-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d47673e750b90a42648b2/download)
    [Logs](https://api.biosimulations.org/logs/677d47673e750b90a42648b2?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d476467468f9f3fc5c60e/download)
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    HTTP response: 201| +|[00862-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00862-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d476e67468f9f3fc5c63d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d476b3e750b90a42648bd/download)
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    HTTP response: 201| +|[00863-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00863-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4777f8016f90e7cbac59/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47723e750b90a42648ca/download)
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    HTTP response: 201| +|[00864-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00864-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d477f3e750b90a42648f3/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d477c3e750b90a42648e9/download)
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    HTTP response: 201| +|[00865-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00865-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d478567468f9f3fc5c683/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4782f8016f90e7cbac84/download)
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    HTTP response: 201| +|[00866-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00866-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d478c67468f9f3fc5c693/download)
    [Logs](https://api.biosimulations.org/logs/677d478c67468f9f3fc5c693?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47893e750b90a4264909/download)
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    HTTP response: 201| +|[00867-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00867-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d47943e750b90a426492c/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d479067468f9f3fc5c6a0/download)
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    HTTP response: 201| +|[00868-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00868-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d479a67468f9f3fc5c6ca/download)
    [Logs](https://api.biosimulations.org/logs/677d479a67468f9f3fc5c6ca?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47973e750b90a4264938/download)
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    HTTP response: 201| +|[00869-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00869-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d47a267468f9f3fc5c6d8/download)
    [Logs](https://api.biosimulations.org/logs/677d47a267468f9f3fc5c6d8?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d479ef8016f90e7cbaccd/download)
    [Logs](https://api.biosimulations.org/logs/677d479ef8016f90e7cbaccd?includeOutput=true)
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    HTTP response: 201| +|[00870-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00870-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d47a9f8016f90e7cbacf4/download)
    [Logs](https://api.biosimulations.org/logs/677d47a9f8016f90e7cbacf4?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47a63e750b90a4264961/download)
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    HTTP response: 201| +|[00871-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00871-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d47b03e750b90a4264979/download)
    [Logs](https://api.biosimulations.org/logs/677d47b03e750b90a4264979?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47ad67468f9f3fc5c6fb/download)
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    HTTP response: 201| +|[00872-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00872-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d47b8f8016f90e7cbad25/download)
    [Logs](https://api.biosimulations.org/logs/677d47b8f8016f90e7cbad25?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47b467468f9f3fc5c70c/download)
    [Logs](https://api.biosimulations.org/logs/677d47b467468f9f3fc5c70c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d47b467468f9f3fc5c70c)

    HTTP response: 201| +|[00873-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00873-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d47c03e750b90a42649a0/download)
    [Logs](https://api.biosimulations.org/logs/677d47c03e750b90a42649a0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d47c03e750b90a42649a0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47bc67468f9f3fc5c721/download)
    [Logs](https://api.biosimulations.org/logs/677d47bc67468f9f3fc5c721?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d47bc67468f9f3fc5c721)

    HTTP response: 201| +|[00874-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00874-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d47c6f8016f90e7cbad55/download)
    [Logs](https://api.biosimulations.org/logs/677d47c6f8016f90e7cbad55?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47c33e750b90a42649b2/download)
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    HTTP response: 201| +|[00875-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00875-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d47cd67468f9f3fc5c746/download)
    [Logs](https://api.biosimulations.org/logs/677d47cd67468f9f3fc5c746?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d47cd67468f9f3fc5c746)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47ca3e750b90a42649c0/download)
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    HTTP response: 201| +|[00876-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00876-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d47d43e750b90a42649d7/download)
    [Logs](https://api.biosimulations.org/logs/677d47d43e750b90a42649d7?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47d1f8016f90e7cbad78/download)
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    HTTP response: 201| +|[00877-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00877-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d47da67468f9f3fc5c76d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47d767468f9f3fc5c758/download)
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    HTTP response: 201| +|[00878-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00878-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d47e167468f9f3fc5c77c/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47def8016f90e7cbada5/download)
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    HTTP response: 201| +|[00879-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00879-sbml-l3v2.xml)|pass|FAIL|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d47e8f8016f90e7cbadc2/download)
    [Logs](https://api.biosimulations.org/logs/677d47e8f8016f90e7cbadc2?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47e567468f9f3fc5c782/download)
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    HTTP response: 201| +|[00880-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00880-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d47ee3e750b90a4264a42/download)
    [Logs](https://api.biosimulations.org/logs/677d47ee3e750b90a4264a42?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d47ee3e750b90a4264a42)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47ebf8016f90e7cbadcb/download)
    [Logs](https://api.biosimulations.org/logs/677d47ebf8016f90e7cbadcb?includeOutput=true)
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    HTTP response: 201| +|[00881-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00881-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d47f43e750b90a4264a57/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47f13e750b90a4264a46/download)
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    HTTP response: 201| +|[00882-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00882-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d47fb3e750b90a4264a72/download)
    [Logs](https://api.biosimulations.org/logs/677d47fb3e750b90a4264a72?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d47fb3e750b90a4264a72)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47f83e750b90a4264a64/download)
    [Logs](https://api.biosimulations.org/logs/677d47f83e750b90a4264a64?includeOutput=true)
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    HTTP response: 201| +|[00883-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00883-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d480267468f9f3fc5c7de/download)
    [Logs](https://api.biosimulations.org/logs/677d480267468f9f3fc5c7de?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d47fff8016f90e7cbae00/download)
    [Logs](https://api.biosimulations.org/logs/677d47fff8016f90e7cbae00?includeOutput=true)
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    HTTP response: 201| +|[00884-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00884-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d480967468f9f3fc5c7f9/download)
    [Logs](https://api.biosimulations.org/logs/677d480967468f9f3fc5c7f9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d480967468f9f3fc5c7f9)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d48063e750b90a4264a92/download)
    [Logs](https://api.biosimulations.org/logs/677d48063e750b90a4264a92?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d48063e750b90a4264a92)

    HTTP response: 201| +|[00885-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00885-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d480f3e750b90a4264aaf/download)
    [Logs](https://api.biosimulations.org/logs/677d480f3e750b90a4264aaf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d480f3e750b90a4264aaf)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d480cf8016f90e7cbae33/download)
    [Logs](https://api.biosimulations.org/logs/677d480cf8016f90e7cbae33?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d480cf8016f90e7cbae33)

    HTTP response: 201| +|[00886-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00886-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d48163e750b90a4264aca/download)
    [Logs](https://api.biosimulations.org/logs/677d48163e750b90a4264aca?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d48163e750b90a4264aca)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4813f8016f90e7cbae4b/download)
    [Logs](https://api.biosimulations.org/logs/677d4813f8016f90e7cbae4b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4813f8016f90e7cbae4b)

    HTTP response: 201| +|[00887-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00887-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d481df8016f90e7cbae64/download)
    [Logs](https://api.biosimulations.org/logs/677d481df8016f90e7cbae64?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d481df8016f90e7cbae64)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d481967468f9f3fc5c830/download)
    [Logs](https://api.biosimulations.org/logs/677d481967468f9f3fc5c830?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d481967468f9f3fc5c830)

    HTTP response: 201| +|[00888-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00888-sbml-l3v2.xml)|pass|FAIL|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4823f8016f90e7cbae76/download)
    [Logs](https://api.biosimulations.org/logs/677d4823f8016f90e7cbae76?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4823f8016f90e7cbae76)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4820f8016f90e7cbae69/download)
    [Logs](https://api.biosimulations.org/logs/677d4820f8016f90e7cbae69?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4820f8016f90e7cbae69)

    HTTP response: 201| +|[00889-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00889-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d482a67468f9f3fc5c86c/download)
    [Logs](https://api.biosimulations.org/logs/677d482a67468f9f3fc5c86c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d482a67468f9f3fc5c86c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d482767468f9f3fc5c85a/download)
    [Logs](https://api.biosimulations.org/logs/677d482767468f9f3fc5c85a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d482767468f9f3fc5c85a)

    HTTP response: 201| +|[00890-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00890-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d48303e750b90a4264b14/download)
    [Logs](https://api.biosimulations.org/logs/677d48303e750b90a4264b14?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d48303e750b90a4264b14)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d482d3e750b90a4264b0c/download)
    [Logs](https://api.biosimulations.org/logs/677d482d3e750b90a4264b0c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d482d3e750b90a4264b0c)

    HTTP response: 201| +|[00891-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00891-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d48373e750b90a4264b37/download)
    [Logs](https://api.biosimulations.org/logs/677d48373e750b90a4264b37?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d48373e750b90a4264b37)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d48333e750b90a4264b25/download)
    [Logs](https://api.biosimulations.org/logs/677d48333e750b90a4264b25?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d48333e750b90a4264b25)

    HTTP response: 201| +|[00892-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00892-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d483c67468f9f3fc5c898/download)
    [Logs](https://api.biosimulations.org/logs/677d483c67468f9f3fc5c898?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d483c67468f9f3fc5c898)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d483a3e750b90a4264b45/download)
    [Logs](https://api.biosimulations.org/logs/677d483a3e750b90a4264b45?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d483a3e750b90a4264b45)

    HTTP response: 201| +|[00893-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00893-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d48433e750b90a4264b65/download)
    [Logs](https://api.biosimulations.org/logs/677d48433e750b90a4264b65?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d48433e750b90a4264b65)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4840f8016f90e7cbaed1/download)
    [Logs](https://api.biosimulations.org/logs/677d4840f8016f90e7cbaed1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4840f8016f90e7cbaed1)

    HTTP response: 201| +|[00894-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00894-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d484b67468f9f3fc5c8bf/download)
    [Logs](https://api.biosimulations.org/logs/677d484b67468f9f3fc5c8bf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d484b67468f9f3fc5c8bf)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d48483e750b90a4264b72/download)
    [Logs](https://api.biosimulations.org/logs/677d48483e750b90a4264b72?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d48483e750b90a4264b72)

    HTTP response: 201| +|[00895-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00895-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4852f8016f90e7cbaf02/download)
    [Logs](https://api.biosimulations.org/logs/677d4852f8016f90e7cbaf02?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4852f8016f90e7cbaf02)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d484f3e750b90a4264b82/download)
    [Logs](https://api.biosimulations.org/logs/677d484f3e750b90a4264b82?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d484f3e750b90a4264b82)

    HTTP response: 201| +|[00896-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00896-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4858f8016f90e7cbaf12/download)
    [Logs](https://api.biosimulations.org/logs/677d4858f8016f90e7cbaf12?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4858f8016f90e7cbaf12)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d48553e750b90a4264b98/download)
    [Logs](https://api.biosimulations.org/logs/677d48553e750b90a4264b98?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d48553e750b90a4264b98)

    HTTP response: 201| +|[00897-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00897-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4860f8016f90e7cbaf27/download)
    [Logs](https://api.biosimulations.org/logs/677d4860f8016f90e7cbaf27?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d4860f8016f90e7cbaf27)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d485d67468f9f3fc5c8f6/download)
    [Logs](https://api.biosimulations.org/logs/677d485d67468f9f3fc5c8f6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d485d67468f9f3fc5c8f6)

    HTTP response: 201| +|[00898-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00898-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d48673e750b90a4264bd5/download)
    [Logs](https://api.biosimulations.org/logs/677d48673e750b90a4264bd5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d48673e750b90a4264bd5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d486467468f9f3fc5c909/download)
    [Logs](https://api.biosimulations.org/logs/677d486467468f9f3fc5c909?includeOutput=true)
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    HTTP response: 201| +|[00899-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00899-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d486e67468f9f3fc5c923/download)
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    pass[Download](https://api.biosimulations.org/results/677d486b67468f9f3fc5c91a/download)
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    HTTP response: 201| +|[00900-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00900-sbml-l2v5.xml)|pass|pass|pass|pass|True|
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    pass[Download](https://api.biosimulations.org/results/677d48713e750b90a4264bf8/download)
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    HTTP response: 201| +|[00901-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00901-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d487b67468f9f3fc5c94c/download)
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    pass[Download](https://api.biosimulations.org/results/677d487867468f9f3fc5c935/download)
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    HTTP response: 201| +|[00902-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00902-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    pass[Download](https://api.biosimulations.org/results/677d487ef8016f90e7cbaf80/download)
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    HTTP response: 201| +|[00903-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00903-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[00904-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00904-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677e71de3e750b90a426a2aa/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677e71dc3e750b90a426a2a7/download)
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    HTTP response: 201| +|[00905-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00905-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4a3b67468f9f3fc5c9ad/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4a38f8016f90e7cbafe6/download)
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    HTTP response: 201| +|[00906-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00906-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4a453e750b90a4264c94/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4a4167468f9f3fc5c9b1/download)
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    HTTP response: 201| +|[00907-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00907-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4a4bf8016f90e7cbaff7/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4a48f8016f90e7cbafef/download)
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    HTTP response: 201| +|[00908-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00908-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4a52f8016f90e7cbb008/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4a4e3e750b90a4264c9a/download)
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    HTTP response: 201| +|[00909-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00909-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4a5b67468f9f3fc5c9f9/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4a5767468f9f3fc5c9ed/download)
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    HTTP response: 201| +|[00910-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00910-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4a6267468f9f3fc5ca0d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4a603e750b90a4264cd4/download)
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    HTTP response: 201| +|[00911-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00911-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4a6a3e750b90a4264cec/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4a663e750b90a4264ce8/download)
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    HTTP response: 201| +|[00912-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00912-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4a723e750b90a4264cff/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4a6ff8016f90e7cbb04a/download)
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    HTTP response: 201| +|[00913-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00913-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4a7bf8016f90e7cbb06d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4a7867468f9f3fc5ca4a/download)
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    HTTP response: 201| +|[00914-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00914-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4a83f8016f90e7cbb07b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4a80f8016f90e7cbb078/download)
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    HTTP response: 201| +|[00915-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00915-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4a883e750b90a4264d3a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4a86f8016f90e7cbb088/download)
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    HTTP response: 201| +|[00916-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00916-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4a9067468f9f3fc5ca84/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4a8d67468f9f3fc5ca7c/download)
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    HTTP response: 201| +|[00917-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00917-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4a99f8016f90e7cbb0b3/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4a96f8016f90e7cbb0ad/download)
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    HTTP response: 201| +|[00918-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00918-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4aa13e750b90a4264d87/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4a9e3e750b90a4264d7d/download)
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    HTTP response: 201| +|[00919-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00919-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4aaa67468f9f3fc5cad0/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4aa73e750b90a4264d8f/download)
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    HTTP response: 201| +|[00920-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00920-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4ab33e750b90a4264db1/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4ab03e750b90a4264da7/download)
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    HTTP response: 201| +|[00921-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00921-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d4ab93e750b90a4264dbf/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4ab667468f9f3fc5caf3/download)
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    HTTP response: 201| +|[00922-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00922-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d570ef8016f90e7cbb172/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d4abf3e750b90a4264dd2/download)
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    HTTP response: 201| +|[00923-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00923-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5715f8016f90e7cbb17a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5712f8016f90e7cbb177/download)
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    HTTP response: 201| +|[00924-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00924-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d571c3e750b90a4264e4a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d57193e750b90a4264e44/download)
    [Logs](https://api.biosimulations.org/logs/677d57193e750b90a4264e44?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57193e750b90a4264e44)

    HTTP response: 201| +|[00925-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00925-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5728f8016f90e7cbb190/download)
    [Logs](https://api.biosimulations.org/logs/677d5728f8016f90e7cbb190?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5728f8016f90e7cbb190)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d572467468f9f3fc5cb8d/download)
    [Logs](https://api.biosimulations.org/logs/677d572467468f9f3fc5cb8d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d572467468f9f3fc5cb8d)

    HTTP response: 201| +|[00926-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00926-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d57343e750b90a4264e80/download)
    [Logs](https://api.biosimulations.org/logs/677d57343e750b90a4264e80?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57343e750b90a4264e80)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d572f67468f9f3fc5cba8/download)
    [Logs](https://api.biosimulations.org/logs/677d572f67468f9f3fc5cba8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d572f67468f9f3fc5cba8)

    HTTP response: 201| +|[00927-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00927-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d573bf8016f90e7cbb1be/download)
    [Logs](https://api.biosimulations.org/logs/677d573bf8016f90e7cbb1be?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d573bf8016f90e7cbb1be)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d573867468f9f3fc5cbb4/download)
    [Logs](https://api.biosimulations.org/logs/677d573867468f9f3fc5cbb4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d573867468f9f3fc5cbb4)

    HTTP response: 201| +|[00928-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00928-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5741f8016f90e7cbb1d3/download)
    [Logs](https://api.biosimulations.org/logs/677d5741f8016f90e7cbb1d3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5741f8016f90e7cbb1d3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d573e67468f9f3fc5cbc4/download)
    [Logs](https://api.biosimulations.org/logs/677d573e67468f9f3fc5cbc4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d573e67468f9f3fc5cbc4)

    HTTP response: 201| +|[00929-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00929-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5748f8016f90e7cbb1e1/download)
    [Logs](https://api.biosimulations.org/logs/677d5748f8016f90e7cbb1e1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5748f8016f90e7cbb1e1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d57443e750b90a4264e9d/download)
    [Logs](https://api.biosimulations.org/logs/677d57443e750b90a4264e9d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57443e750b90a4264e9d)

    HTTP response: 201| +|[00930-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00930-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d574ef8016f90e7cbb1f4/download)
    [Logs](https://api.biosimulations.org/logs/677d574ef8016f90e7cbb1f4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d574ef8016f90e7cbb1f4)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d574b67468f9f3fc5cbea/download)
    [Logs](https://api.biosimulations.org/logs/677d574b67468f9f3fc5cbea?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d574b67468f9f3fc5cbea)

    HTTP response: 201| +|[00931-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00931-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5754f8016f90e7cbb20b/download)
    [Logs](https://api.biosimulations.org/logs/677d5754f8016f90e7cbb20b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5754f8016f90e7cbb20b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5752f8016f90e7cbb202/download)
    [Logs](https://api.biosimulations.org/logs/677d5752f8016f90e7cbb202?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5752f8016f90e7cbb202)

    HTTP response: 201| +|[00932-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00932-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d575af8016f90e7cbb21b/download)
    [Logs](https://api.biosimulations.org/logs/677d575af8016f90e7cbb21b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d575af8016f90e7cbb21b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d57573e750b90a4264ed9/download)
    [Logs](https://api.biosimulations.org/logs/677d57573e750b90a4264ed9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57573e750b90a4264ed9)

    HTTP response: 201| +|[00933-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00933-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d575ff8016f90e7cbb23b/download)
    [Logs](https://api.biosimulations.org/logs/677d575ff8016f90e7cbb23b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d575ff8016f90e7cbb23b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d575d3e750b90a4264eeb/download)
    [Logs](https://api.biosimulations.org/logs/677d575d3e750b90a4264eeb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d575d3e750b90a4264eeb)

    HTTP response: 201| +|[00934-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00934-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5765f8016f90e7cbb24d/download)
    [Logs](https://api.biosimulations.org/logs/677d5765f8016f90e7cbb24d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5765f8016f90e7cbb24d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d576267468f9f3fc5cc2e/download)
    [Logs](https://api.biosimulations.org/logs/677d576267468f9f3fc5cc2e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d576267468f9f3fc5cc2e)

    HTTP response: 201| +|[00935-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00935-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d576a67468f9f3fc5cc52/download)
    [Logs](https://api.biosimulations.org/logs/677d576a67468f9f3fc5cc52?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d576a67468f9f3fc5cc52)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d57673e750b90a4264f11/download)
    [Logs](https://api.biosimulations.org/logs/677d57673e750b90a4264f11?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57673e750b90a4264f11)

    HTTP response: 201| +|[00936-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00936-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d576ff8016f90e7cbb272/download)
    [Logs](https://api.biosimulations.org/logs/677d576ff8016f90e7cbb272?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d576ff8016f90e7cbb272)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d576d3e750b90a4264f23/download)
    [Logs](https://api.biosimulations.org/logs/677d576d3e750b90a4264f23?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d576d3e750b90a4264f23)

    HTTP response: 201| +|[00937-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00937-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(x, 0.2)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d577567468f9f3fc5cc71/download)
    [Logs](https://api.biosimulations.org/logs/677d577567468f9f3fc5cc71?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d577567468f9f3fc5cc71)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(x, 0.2)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d57723e750b90a4264f3d/download)
    [Logs](https://api.biosimulations.org/logs/677d57723e750b90a4264f3d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57723e750b90a4264f3d)

    HTTP response: 201| +|[00938-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00938-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(x, 0.2)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d577bf8016f90e7cbb29b/download)
    [Logs](https://api.biosimulations.org/logs/677d577bf8016f90e7cbb29b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d577bf8016f90e7cbb29b)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(x, 0.2)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d577867468f9f3fc5cc88/download)
    [Logs](https://api.biosimulations.org/logs/677d577867468f9f3fc5cc88?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d577867468f9f3fc5cc88)

    HTTP response: 201| +|[00939-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00939-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(x, 0.2)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d578067468f9f3fc5cca2/download)
    [Logs](https://api.biosimulations.org/logs/677d578067468f9f3fc5cca2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d578067468f9f3fc5cca2)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(x, 0.2)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d577e67468f9f3fc5cc9b/download)
    [Logs](https://api.biosimulations.org/logs/677d577e67468f9f3fc5cc9b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d577e67468f9f3fc5cc9b)

    HTTP response: 201| +|[00940-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00940-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(x, 0.5)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d578667468f9f3fc5ccb7/download)
    [Logs](https://api.biosimulations.org/logs/677d578667468f9f3fc5ccb7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d578667468f9f3fc5ccb7)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(x, 0.5)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d57843e750b90a4264f80/download)
    [Logs](https://api.biosimulations.org/logs/677d57843e750b90a4264f80?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57843e750b90a4264f80)

    HTTP response: 201| +|[00941-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00941-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(x, 0.5)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d578cf8016f90e7cbb2dd/download)
    [Logs](https://api.biosimulations.org/logs/677d578cf8016f90e7cbb2dd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d578cf8016f90e7cbb2dd)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(x, 0.5)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d578af8016f90e7cbb2d6/download)
    [Logs](https://api.biosimulations.org/logs/677d578af8016f90e7cbb2d6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d578af8016f90e7cbb2d6)

    HTTP response: 201| +|[00942-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00942-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(x, 0.5)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d57923e750b90a4264fae/download)
    [Logs](https://api.biosimulations.org/logs/677d57923e750b90a4264fae?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57923e750b90a4264fae)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(x, 0.5)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d578ff8016f90e7cbb2e2/download)
    [Logs](https://api.biosimulations.org/logs/677d578ff8016f90e7cbb2e2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d578ff8016f90e7cbb2e2)

    HTTP response: 201| +|[00943-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00943-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(x, 0.5)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d579767468f9f3fc5ccf2/download)
    [Logs](https://api.biosimulations.org/logs/677d579767468f9f3fc5ccf2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d579767468f9f3fc5ccf2)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(x, 0.5)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5795f8016f90e7cbb2fe/download)
    [Logs](https://api.biosimulations.org/logs/677d5795f8016f90e7cbb2fe?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5795f8016f90e7cbb2fe)

    HTTP response: 201| +|[00944-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00944-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d579df8016f90e7cbb321/download)
    [Logs](https://api.biosimulations.org/logs/677d579df8016f90e7cbb321?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d579df8016f90e7cbb321)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d579af8016f90e7cbb30b/download)
    [Logs](https://api.biosimulations.org/logs/677d579af8016f90e7cbb30b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d579af8016f90e7cbb30b)

    HTTP response: 201| +|[00945-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00945-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d57a3f8016f90e7cbb334/download)
    [Logs](https://api.biosimulations.org/logs/677d57a3f8016f90e7cbb334?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57a3f8016f90e7cbb334)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d57a13e750b90a4264fe8/download)
    [Logs](https://api.biosimulations.org/logs/677d57a13e750b90a4264fe8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57a13e750b90a4264fe8)

    HTTP response: 201| +|[00946-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00946-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d57a9f8016f90e7cbb34d/download)
    [Logs](https://api.biosimulations.org/logs/677d57a9f8016f90e7cbb34d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57a9f8016f90e7cbb34d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d57a667468f9f3fc5cd31/download)
    [Logs](https://api.biosimulations.org/logs/677d57a667468f9f3fc5cd31?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57a667468f9f3fc5cd31)

    HTTP response: 201| +|[00947-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00947-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d57af3e750b90a426501e/download)
    [Logs](https://api.biosimulations.org/logs/677d57af3e750b90a426501e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57af3e750b90a426501e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d57ac67468f9f3fc5cd3f/download)
    [Logs](https://api.biosimulations.org/logs/677d57ac67468f9f3fc5cd3f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57ac67468f9f3fc5cd3f)

    HTTP response: 201| +|[00948-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00948-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d57b43e750b90a4265031/download)
    [Logs](https://api.biosimulations.org/logs/677d57b43e750b90a4265031?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57b43e750b90a4265031)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d57b13e750b90a4265025/download)
    [Logs](https://api.biosimulations.org/logs/677d57b13e750b90a4265025?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57b13e750b90a4265025)

    HTTP response: 201| +|[00949-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00949-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d57b8f8016f90e7cbb384/download)
    [Logs](https://api.biosimulations.org/logs/677d57b8f8016f90e7cbb384?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57b8f8016f90e7cbb384)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d57b6f8016f90e7cbb370/download)
    [Logs](https://api.biosimulations.org/logs/677d57b6f8016f90e7cbb370?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57b6f8016f90e7cbb370)

    HTTP response: 201| +|[00950-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00950-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d57bdf8016f90e7cbb3a3/download)
    [Logs](https://api.biosimulations.org/logs/677d57bdf8016f90e7cbb3a3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57bdf8016f90e7cbb3a3)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Simulation failed: 11 nan value(s) found in results with algorithm KISAO_0000019 (cvode) - relative_tolerance: 1e-06 - absolute_tolerance: 1e-12 - stiff: True - maximum_bdf_order: 5 - maximum_adams_order: 12 - maximum_num_steps: 20000 - maximum_time_step: 0.0 - minimum_time_step: 0.0 - initial_time_step: 0.0 - multiple_steps: False - variable_step_size: False - max_output_rows: 100000```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d57bbf8016f90e7cbb38f/download)
    [Logs](https://api.biosimulations.org/logs/677d57bbf8016f90e7cbb38f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57bbf8016f90e7cbb38f)

    HTTP response: 201| +|[00951-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00951-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d57c367468f9f3fc5cd80/download)
    [Logs](https://api.biosimulations.org/logs/677d57c367468f9f3fc5cd80?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57c367468f9f3fc5cd80)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Simulation failed: 11 nan value(s) found in results with algorithm KISAO_0000019 (cvode) - relative_tolerance: 1e-06 - absolute_tolerance: 1e-12 - stiff: True - maximum_bdf_order: 5 - maximum_adams_order: 12 - maximum_num_steps: 20000 - maximum_time_step: 0.0 - minimum_time_step: 0.0 - initial_time_step: 0.0 - multiple_steps: False - variable_step_size: False - max_output_rows: 100000```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d57c03e750b90a4265062/download)
    [Logs](https://api.biosimulations.org/logs/677d57c03e750b90a4265062?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57c03e750b90a4265062)

    HTTP response: 201| +|[00952-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00952-sbml-l3v2.xml)|pass|pass|pass|
    skippedCase is skipped because it leads to a float error when trying to run it in tellurium natively, which leads to reset errors in subsequent cases that would otherwise pass.
    |True|
    pass[Download](https://api.biosimulations.org/results/677d57c83e750b90a4265080/download)
    [Logs](https://api.biosimulations.org/logs/677d57c83e750b90a4265080?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57c83e750b90a4265080)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d57c63e750b90a4265077/download)
    [Logs](https://api.biosimulations.org/logs/677d57c63e750b90a4265077?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57c63e750b90a4265077)

    HTTP response: 201| +|[00953-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00953-sbml-l3v2.xml)|pass|pass|pass|
    skippedCase is skipped because it leads to a float error when trying to run it in tellurium natively, which leads to reset errors in subsequent cases that would otherwise pass.
    |True|
    pass[Download](https://api.biosimulations.org/results/677d57cd3e750b90a426509d/download)
    [Logs](https://api.biosimulations.org/logs/677d57cd3e750b90a426509d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57cd3e750b90a426509d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d57cb3e750b90a4265091/download)
    [Logs](https://api.biosimulations.org/logs/677d57cb3e750b90a4265091?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57cb3e750b90a4265091)

    HTTP response: 201| +|[00954-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00954-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d57d367468f9f3fc5cdad/download)
    [Logs](https://api.biosimulations.org/logs/677d57d367468f9f3fc5cdad?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57d367468f9f3fc5cdad)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d57d03e750b90a42650ae/download)
    [Logs](https://api.biosimulations.org/logs/677d57d03e750b90a42650ae?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57d03e750b90a42650ae)

    HTTP response: 201| +|[00955-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00955-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d57d8f8016f90e7cbb40f/download)
    [Logs](https://api.biosimulations.org/logs/677d57d8f8016f90e7cbb40f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57d8f8016f90e7cbb40f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d57d5f8016f90e7cbb406/download)
    [Logs](https://api.biosimulations.org/logs/677d57d5f8016f90e7cbb406?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57d5f8016f90e7cbb406)

    HTTP response: 201| +|[00956-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00956-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d57de67468f9f3fc5cde0/download)
    [Logs](https://api.biosimulations.org/logs/677d57de67468f9f3fc5cde0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57de67468f9f3fc5cde0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d57dbf8016f90e7cbb422/download)
    [Logs](https://api.biosimulations.org/logs/677d57dbf8016f90e7cbb422?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57dbf8016f90e7cbb422)

    HTTP response: 201| +|[00957-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00957-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d57e4f8016f90e7cbb44b/download)
    [Logs](https://api.biosimulations.org/logs/677d57e4f8016f90e7cbb44b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57e4f8016f90e7cbb44b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d57e167468f9f3fc5cde9/download)
    [Logs](https://api.biosimulations.org/logs/677d57e167468f9f3fc5cde9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57e167468f9f3fc5cde9)

    HTTP response: 201| +|[00958-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00958-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d57ebf8016f90e7cbb46e/download)
    [Logs](https://api.biosimulations.org/logs/677d57ebf8016f90e7cbb46e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57ebf8016f90e7cbb46e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d57e83e750b90a42650fb/download)
    [Logs](https://api.biosimulations.org/logs/677d57e83e750b90a42650fb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57e83e750b90a42650fb)

    HTTP response: 201| +|[00959-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00959-sbml-l3v2.xml)|FAIL|FAIL|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d57f067468f9f3fc5ce1b/download)
    [Logs](https://api.biosimulations.org/logs/677d57f067468f9f3fc5ce1b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57f067468f9f3fc5ce1b)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp843124 is invalid. - Model model_1 is invalid. - The model file 00959-sbml-l3v2.xml is invalid. - SBML identifier consistency (10313) at line 3, column 2: Unit identifier references (i.e the 'units' attribute on , the 'units' attribute on , and the 'substanceUnits' attribute on ) must be the identifier of a in the , or the identifier of a predefined unit in SBML. Reference: L3V2 Section 4.4.2 The areaUnits 'area' do not refer to a valid unit kind/built-in unit or the identifier of an existing . ```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d57edf8016f90e7cbb475/download)
    [Logs](https://api.biosimulations.org/logs/677d57edf8016f90e7cbb475?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57edf8016f90e7cbb475)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp47932 is invalid. - Model model_1 is invalid. - The model file 00959-sbml-l3v2.xml is invalid. - SBML identifier consistency (10313) at line 3, column 2: Unit identifier references (i.e the 'units' attribute on , the 'units' attribute on , and the 'substanceUnits' attribute on ) must be the identifier of a in the , or the identifier of a predefined unit in SBML. Reference: L3V2 Section 4.4.2 The areaUnits 'area' do not refer to a valid unit kind/built-in unit or the identifier of an existing . ```

    Exception type: ```ValueError```| +|[00960-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00960-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d57f567468f9f3fc5ce29/download)
    [Logs](https://api.biosimulations.org/logs/677d57f567468f9f3fc5ce29?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57f567468f9f3fc5ce29)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d57f367468f9f3fc5ce25/download)
    [Logs](https://api.biosimulations.org/logs/677d57f367468f9f3fc5ce25?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57f367468f9f3fc5ce25)

    HTTP response: 201| +|[00961-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00961-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d57fc67468f9f3fc5ce43/download)
    [Logs](https://api.biosimulations.org/logs/677d57fc67468f9f3fc5ce43?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57fc67468f9f3fc5ce43)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d57f867468f9f3fc5ce38/download)
    [Logs](https://api.biosimulations.org/logs/677d57f867468f9f3fc5ce38?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57f867468f9f3fc5ce38)

    HTTP response: 201| +|[00962-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00962-sbml-l3v2.xml)|pass|pass|pass|
    skippedCase is skipped because it leads to a float error when trying to run it in tellurium natively, which leads to reset errors in subsequent cases that would otherwise pass.
    |True|
    pass[Download](https://api.biosimulations.org/results/677d580167468f9f3fc5ce58/download)
    [Logs](https://api.biosimulations.org/logs/677d580167468f9f3fc5ce58?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d580167468f9f3fc5ce58)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d57fe67468f9f3fc5ce4d/download)
    [Logs](https://api.biosimulations.org/logs/677d57fe67468f9f3fc5ce4d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d57fe67468f9f3fc5ce4d)

    HTTP response: 201| +|[00963-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00963-sbml-l3v2.xml)|pass|pass|pass|
    skippedCase is skipped because it leads to a float error when trying to run it in tellurium natively, which leads to reset errors in subsequent cases that would otherwise pass.
    |True|
    pass[Download](https://api.biosimulations.org/results/677d5807f8016f90e7cbb4d2/download)
    [Logs](https://api.biosimulations.org/logs/677d5807f8016f90e7cbb4d2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5807f8016f90e7cbb4d2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d580467468f9f3fc5ce64/download)
    [Logs](https://api.biosimulations.org/logs/677d580467468f9f3fc5ce64?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d580467468f9f3fc5ce64)

    HTTP response: 201| +|[00964-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00964-sbml-l3v2.xml)|pass|pass|pass|
    skippedCase is skipped because it leads to a float error when trying to run it in tellurium natively, which leads to reset errors in subsequent cases that would otherwise pass.
    |True|
    pass[Download](https://api.biosimulations.org/results/677d580cf8016f90e7cbb4e7/download)
    [Logs](https://api.biosimulations.org/logs/677d580cf8016f90e7cbb4e7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d580cf8016f90e7cbb4e7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d580967468f9f3fc5ce76/download)
    [Logs](https://api.biosimulations.org/logs/677d580967468f9f3fc5ce76?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d580967468f9f3fc5ce76)

    HTTP response: 201| +|[00965-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00965-sbml-l3v2.xml)|pass|pass|pass|
    skippedCase is skipped because it leads to a float error when trying to run it in tellurium natively, which leads to reset errors in subsequent cases that would otherwise pass.
    |True|
    pass[Download](https://api.biosimulations.org/results/677d581167468f9f3fc5ce86/download)
    [Logs](https://api.biosimulations.org/logs/677d581167468f9f3fc5ce86?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d581167468f9f3fc5ce86)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d580f3e750b90a4265193/download)
    [Logs](https://api.biosimulations.org/logs/677d580f3e750b90a4265193?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d580f3e750b90a4265193)

    HTTP response: 201| +|[00966-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00966-sbml-l3v2.xml)|pass|pass|pass|
    skippedCase is skipped because it leads to a float error when trying to run it in tellurium natively, which leads to reset errors in subsequent cases that would otherwise pass.
    |True|
    pass[Download](https://api.biosimulations.org/results/677d58173e750b90a42651ac/download)
    [Logs](https://api.biosimulations.org/logs/677d58173e750b90a42651ac?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58173e750b90a42651ac)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d581567468f9f3fc5ce96/download)
    [Logs](https://api.biosimulations.org/logs/677d581567468f9f3fc5ce96?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d581567468f9f3fc5ce96)

    HTTP response: 201| +|[00967-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00967-sbml-l3v2.xml)|pass|pass|pass|
    skippedCase is skipped because it leads to a float error when trying to run it in tellurium natively, which leads to reset errors in subsequent cases that would otherwise pass.
    |True|
    pass[Download](https://api.biosimulations.org/results/677d581c67468f9f3fc5cebc/download)
    [Logs](https://api.biosimulations.org/logs/677d581c67468f9f3fc5cebc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d581c67468f9f3fc5cebc)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d581a3e750b90a42651b2/download)
    [Logs](https://api.biosimulations.org/logs/677d581a3e750b90a42651b2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d581a3e750b90a42651b2)

    HTTP response: 201| +|[00968-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00968-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d582367468f9f3fc5ceca/download)
    [Logs](https://api.biosimulations.org/logs/677d582367468f9f3fc5ceca?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d582367468f9f3fc5ceca)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d581ff8016f90e7cbb535/download)
    [Logs](https://api.biosimulations.org/logs/677d581ff8016f90e7cbb535?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d581ff8016f90e7cbb535)

    HTTP response: 201| +|[00969-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00969-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58283e750b90a42651f0/download)
    [Logs](https://api.biosimulations.org/logs/677d58283e750b90a42651f0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58283e750b90a42651f0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58263e750b90a42651ec/download)
    [Logs](https://api.biosimulations.org/logs/677d58263e750b90a42651ec?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58263e750b90a42651ec)

    HTTP response: 201| +|[00970-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00970-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d582ef8016f90e7cbb58e/download)
    [Logs](https://api.biosimulations.org/logs/677d582ef8016f90e7cbb58e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d582ef8016f90e7cbb58e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d582b67468f9f3fc5cee2/download)
    [Logs](https://api.biosimulations.org/logs/677d582b67468f9f3fc5cee2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d582b67468f9f3fc5cee2)

    HTTP response: 201| +|[00971-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00971-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58333e750b90a4265224/download)
    [Logs](https://api.biosimulations.org/logs/677d58333e750b90a4265224?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58333e750b90a4265224)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5831f8016f90e7cbb597/download)
    [Logs](https://api.biosimulations.org/logs/677d5831f8016f90e7cbb597?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5831f8016f90e7cbb597)

    HTTP response: 201| +|[00972-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00972-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5838f8016f90e7cbb5ac/download)
    [Logs](https://api.biosimulations.org/logs/677d5838f8016f90e7cbb5ac?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5838f8016f90e7cbb5ac)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5836f8016f90e7cbb5a2/download)
    [Logs](https://api.biosimulations.org/logs/677d5836f8016f90e7cbb5a2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5836f8016f90e7cbb5a2)

    HTTP response: 201| +|[00973-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00973-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d583ef8016f90e7cbb5c2/download)
    [Logs](https://api.biosimulations.org/logs/677d583ef8016f90e7cbb5c2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d583ef8016f90e7cbb5c2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d583b3e750b90a426524b/download)
    [Logs](https://api.biosimulations.org/logs/677d583b3e750b90a426524b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d583b3e750b90a426524b)

    HTTP response: 201| +|[00974-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00974-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5844f8016f90e7cbb5d6/download)
    [Logs](https://api.biosimulations.org/logs/677d5844f8016f90e7cbb5d6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5844f8016f90e7cbb5d6)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d584267468f9f3fc5cf3c/download)
    [Logs](https://api.biosimulations.org/logs/677d584267468f9f3fc5cf3c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d584267468f9f3fc5cf3c)

    HTTP response: 201| +|[00975-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00975-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d584967468f9f3fc5cf61/download)
    [Logs](https://api.biosimulations.org/logs/677d584967468f9f3fc5cf61?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d584967468f9f3fc5cf61)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58463e750b90a4265271/download)
    [Logs](https://api.biosimulations.org/logs/677d58463e750b90a4265271?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58463e750b90a4265271)

    HTTP response: 201| +|[00976-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00976-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d584f67468f9f3fc5cf76/download)
    [Logs](https://api.biosimulations.org/logs/677d584f67468f9f3fc5cf76?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d584f67468f9f3fc5cf76)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d584c3e750b90a426529a/download)
    [Logs](https://api.biosimulations.org/logs/677d584c3e750b90a426529a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d584c3e750b90a426529a)

    HTTP response: 201| +|[00977-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00977-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58553e750b90a42652ad/download)
    [Logs](https://api.biosimulations.org/logs/677d58553e750b90a42652ad?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58553e750b90a42652ad)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d585267468f9f3fc5cf81/download)
    [Logs](https://api.biosimulations.org/logs/677d585267468f9f3fc5cf81?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d585267468f9f3fc5cf81)

    HTTP response: 201| +|[00978-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00978-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d585a3e750b90a42652c2/download)
    [Logs](https://api.biosimulations.org/logs/677d585a3e750b90a42652c2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d585a3e750b90a42652c2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58573e750b90a42652ba/download)
    [Logs](https://api.biosimulations.org/logs/677d58573e750b90a42652ba?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58573e750b90a42652ba)

    HTTP response: 201| +|[00979-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00979-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d585f3e750b90a42652d0/download)
    [Logs](https://api.biosimulations.org/logs/677d585f3e750b90a42652d0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d585f3e750b90a42652d0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d585c67468f9f3fc5cfa2/download)
    [Logs](https://api.biosimulations.org/logs/677d585c67468f9f3fc5cfa2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d585c67468f9f3fc5cfa2)

    HTTP response: 201| +|[00980-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00980-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d586567468f9f3fc5cfb7/download)
    [Logs](https://api.biosimulations.org/logs/677d586567468f9f3fc5cfb7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d586567468f9f3fc5cfb7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58623e750b90a42652df/download)
    [Logs](https://api.biosimulations.org/logs/677d58623e750b90a42652df?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58623e750b90a42652df)

    HTTP response: 201| +|[00981-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00981-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(x, time / 2)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d586a67468f9f3fc5cfc8/download)
    [Logs](https://api.biosimulations.org/logs/677d586a67468f9f3fc5cfc8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d586a67468f9f3fc5cfc8)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(x, time / 2)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5867f8016f90e7cbb67e/download)
    [Logs](https://api.biosimulations.org/logs/677d5867f8016f90e7cbb67e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5867f8016f90e7cbb67e)

    HTTP response: 201| +|[00982-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00982-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(x, temp)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d586ff8016f90e7cbb697/download)
    [Logs](https://api.biosimulations.org/logs/677d586ff8016f90e7cbb697?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d586ff8016f90e7cbb697)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(x, temp)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d586c3e750b90a426530f/download)
    [Logs](https://api.biosimulations.org/logs/677d586c3e750b90a426530f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d586c3e750b90a426530f)

    HTTP response: 201| +|[00983-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00983-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = -1 * temp + time / 2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d58743e750b90a4265325/download)
    [Logs](https://api.biosimulations.org/logs/677d58743e750b90a4265325?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58743e750b90a4265325)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'temp' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5872f8016f90e7cbb6a9/download)
    [Logs](https://api.biosimulations.org/logs/677d5872f8016f90e7cbb6a9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5872f8016f90e7cbb6a9)

    HTTP response: 201| +|[00984-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00984-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(x, temp)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d587af8016f90e7cbb6c9/download)
    [Logs](https://api.biosimulations.org/logs/677d587af8016f90e7cbb6c9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d587af8016f90e7cbb6c9)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(x, temp)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5877f8016f90e7cbb6c0/download)
    [Logs](https://api.biosimulations.org/logs/677d5877f8016f90e7cbb6c0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5877f8016f90e7cbb6c0)

    HTTP response: 201| +|[00985-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00985-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(x, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d587f3e750b90a4265354/download)
    [Logs](https://api.biosimulations.org/logs/677d587f3e750b90a4265354?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d587f3e750b90a4265354)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(x, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d587d67468f9f3fc5d00e/download)
    [Logs](https://api.biosimulations.org/logs/677d587d67468f9f3fc5d00e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d587d67468f9f3fc5d00e)

    HTTP response: 201| +|[00986-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00986-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d588567468f9f3fc5d02b/download)
    [Logs](https://api.biosimulations.org/logs/677d588567468f9f3fc5d02b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d588567468f9f3fc5d02b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5882f8016f90e7cbb6ed/download)
    [Logs](https://api.biosimulations.org/logs/677d5882f8016f90e7cbb6ed?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5882f8016f90e7cbb6ed)

    HTTP response: 201| +|[00987-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00987-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d588a3e750b90a4265377/download)
    [Logs](https://api.biosimulations.org/logs/677d588a3e750b90a4265377?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d588a3e750b90a4265377)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d588867468f9f3fc5d039/download)
    [Logs](https://api.biosimulations.org/logs/677d588867468f9f3fc5d039?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d588867468f9f3fc5d039)

    HTTP response: 201| +|[00988-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00988-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d588e67468f9f3fc5d056/download)
    [Logs](https://api.biosimulations.org/logs/677d588e67468f9f3fc5d056?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d588e67468f9f3fc5d056)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d588c3e750b90a426537f/download)
    [Logs](https://api.biosimulations.org/logs/677d588c3e750b90a426537f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d588c3e750b90a426537f)

    HTTP response: 201| +|[00989-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00989-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5893f8016f90e7cbb72d/download)
    [Logs](https://api.biosimulations.org/logs/677d5893f8016f90e7cbb72d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5893f8016f90e7cbb72d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5891f8016f90e7cbb727/download)
    [Logs](https://api.biosimulations.org/logs/677d5891f8016f90e7cbb727?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5891f8016f90e7cbb727)

    HTTP response: 201| +|[00990-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00990-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5898f8016f90e7cbb748/download)
    [Logs](https://api.biosimulations.org/logs/677d5898f8016f90e7cbb748?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5898f8016f90e7cbb748)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5896f8016f90e7cbb739/download)
    [Logs](https://api.biosimulations.org/logs/677d5896f8016f90e7cbb739?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5896f8016f90e7cbb739)

    HTTP response: 201| +|[00991-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00991-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d589e3e750b90a42653c4/download)
    [Logs](https://api.biosimulations.org/logs/677d589e3e750b90a42653c4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d589e3e750b90a42653c4)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d589b3e750b90a42653b0/download)
    [Logs](https://api.biosimulations.org/logs/677d589b3e750b90a42653b0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d589b3e750b90a42653b0)

    HTTP response: 201| +|[00992-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00992-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58a33e750b90a42653d9/download)
    [Logs](https://api.biosimulations.org/logs/677d58a33e750b90a42653d9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58a33e750b90a42653d9)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58a1f8016f90e7cbb767/download)
    [Logs](https://api.biosimulations.org/logs/677d58a1f8016f90e7cbb767?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58a1f8016f90e7cbb767)

    HTTP response: 201| +|[00993-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00993-sbml-l2v5.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = X - p1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d58a8f8016f90e7cbb77f/download)
    [Logs](https://api.biosimulations.org/logs/677d58a8f8016f90e7cbb77f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58a8f8016f90e7cbb77f)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'p1' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d58a567468f9f3fc5d0bb/download)
    [Logs](https://api.biosimulations.org/logs/677d58a567468f9f3fc5d0bb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58a567468f9f3fc5d0bb)

    HTTP response: 201| +|[00994-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00994-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58acf8016f90e7cbb791/download)
    [Logs](https://api.biosimulations.org/logs/677d58acf8016f90e7cbb791?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58acf8016f90e7cbb791)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58aaf8016f90e7cbb78b/download)
    [Logs](https://api.biosimulations.org/logs/677d58aaf8016f90e7cbb78b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58aaf8016f90e7cbb78b)

    HTTP response: 201| +|[00995-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00995-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58b2f8016f90e7cbb7b9/download)
    [Logs](https://api.biosimulations.org/logs/677d58b2f8016f90e7cbb7b9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58b2f8016f90e7cbb7b9)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58aff8016f90e7cbb7ab/download)
    [Logs](https://api.biosimulations.org/logs/677d58aff8016f90e7cbb7ab?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58aff8016f90e7cbb7ab)

    HTTP response: 201| +|[00996-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00996-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58b7f8016f90e7cbb7c3/download)
    [Logs](https://api.biosimulations.org/logs/677d58b7f8016f90e7cbb7c3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58b7f8016f90e7cbb7c3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58b467468f9f3fc5d0ea/download)
    [Logs](https://api.biosimulations.org/logs/677d58b467468f9f3fc5d0ea?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58b467468f9f3fc5d0ea)

    HTTP response: 201| +|[00997-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00997-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58bcf8016f90e7cbb7d8/download)
    [Logs](https://api.biosimulations.org/logs/677d58bcf8016f90e7cbb7d8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58bcf8016f90e7cbb7d8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58b93e750b90a4265440/download)
    [Logs](https://api.biosimulations.org/logs/677d58b93e750b90a4265440?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58b93e750b90a4265440)

    HTTP response: 201| +|[00998-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00998-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58c13e750b90a4265466/download)
    [Logs](https://api.biosimulations.org/logs/677d58c13e750b90a4265466?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58c13e750b90a4265466)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58bf3e750b90a426545a/download)
    [Logs](https://api.biosimulations.org/logs/677d58bf3e750b90a426545a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58bf3e750b90a426545a)

    HTTP response: 201| +|[00999-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\00999-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58c667468f9f3fc5d11f/download)
    [Logs](https://api.biosimulations.org/logs/677d58c667468f9f3fc5d11f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58c667468f9f3fc5d11f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58c4f8016f90e7cbb7ee/download)
    [Logs](https://api.biosimulations.org/logs/677d58c4f8016f90e7cbb7ee?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58c4f8016f90e7cbb7ee)

    HTTP response: 201| +|[01000-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01000-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58cbf8016f90e7cbb830/download)
    [Logs](https://api.biosimulations.org/logs/677d58cbf8016f90e7cbb830?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58cbf8016f90e7cbb830)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58c83e750b90a426547a/download)
    [Logs](https://api.biosimulations.org/logs/677d58c83e750b90a426547a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58c83e750b90a426547a)

    HTTP response: 201| +|[01001-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01001-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58d03e750b90a42654a7/download)
    [Logs](https://api.biosimulations.org/logs/677d58d03e750b90a42654a7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58d03e750b90a42654a7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58cd67468f9f3fc5d144/download)
    [Logs](https://api.biosimulations.org/logs/677d58cd67468f9f3fc5d144?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58cd67468f9f3fc5d144)

    HTTP response: 201| +|[01002-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01002-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58d4f8016f90e7cbb86f/download)
    [Logs](https://api.biosimulations.org/logs/677d58d4f8016f90e7cbb86f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58d4f8016f90e7cbb86f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58d2f8016f90e7cbb865/download)
    [Logs](https://api.biosimulations.org/logs/677d58d2f8016f90e7cbb865?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58d2f8016f90e7cbb865)

    HTTP response: 201| +|[01003-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01003-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58da67468f9f3fc5d17d/download)
    [Logs](https://api.biosimulations.org/logs/677d58da67468f9f3fc5d17d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58da67468f9f3fc5d17d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58d7f8016f90e7cbb876/download)
    [Logs](https://api.biosimulations.org/logs/677d58d7f8016f90e7cbb876?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58d7f8016f90e7cbb876)

    HTTP response: 201| +|[01004-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01004-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58e067468f9f3fc5d188/download)
    [Logs](https://api.biosimulations.org/logs/677d58e067468f9f3fc5d188?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58e067468f9f3fc5d188)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58dd3e750b90a42654dc/download)
    [Logs](https://api.biosimulations.org/logs/677d58dd3e750b90a42654dc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58dd3e750b90a42654dc)

    HTTP response: 201| +|[01005-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01005-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58e53e750b90a42654f1/download)
    [Logs](https://api.biosimulations.org/logs/677d58e53e750b90a42654f1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58e53e750b90a42654f1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58e23e750b90a42654e7/download)
    [Logs](https://api.biosimulations.org/logs/677d58e23e750b90a42654e7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58e23e750b90a42654e7)

    HTTP response: 201| +|[01006-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01006-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58ea3e750b90a4265509/download)
    [Logs](https://api.biosimulations.org/logs/677d58ea3e750b90a4265509?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58ea3e750b90a4265509)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58e867468f9f3fc5d1a9/download)
    [Logs](https://api.biosimulations.org/logs/677d58e867468f9f3fc5d1a9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58e867468f9f3fc5d1a9)

    HTTP response: 201| +|[01007-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01007-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58f1f8016f90e7cbb8ee/download)
    [Logs](https://api.biosimulations.org/logs/677d58f1f8016f90e7cbb8ee?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58f1f8016f90e7cbb8ee)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58ee67468f9f3fc5d1c8/download)
    [Logs](https://api.biosimulations.org/logs/677d58ee67468f9f3fc5d1c8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58ee67468f9f3fc5d1c8)

    HTTP response: 201| +|[01008-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01008-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58f667468f9f3fc5d1e4/download)
    [Logs](https://api.biosimulations.org/logs/677d58f667468f9f3fc5d1e4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58f667468f9f3fc5d1e4)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58f43e750b90a4265542/download)
    [Logs](https://api.biosimulations.org/logs/677d58f43e750b90a4265542?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58f43e750b90a4265542)

    HTTP response: 201| +|[01009-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01009-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d58fbf8016f90e7cbb90c/download)
    [Logs](https://api.biosimulations.org/logs/677d58fbf8016f90e7cbb90c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58fbf8016f90e7cbb90c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58f93e750b90a4265554/download)
    [Logs](https://api.biosimulations.org/logs/677d58f93e750b90a4265554?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58f93e750b90a4265554)

    HTTP response: 201| +|[01010-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01010-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5900f8016f90e7cbb926/download)
    [Logs](https://api.biosimulations.org/logs/677d5900f8016f90e7cbb926?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5900f8016f90e7cbb926)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d58fdf8016f90e7cbb912/download)
    [Logs](https://api.biosimulations.org/logs/677d58fdf8016f90e7cbb912?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d58fdf8016f90e7cbb912)

    HTTP response: 201| +|[01011-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01011-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d590467468f9f3fc5d21f/download)
    [Logs](https://api.biosimulations.org/logs/677d590467468f9f3fc5d21f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d590467468f9f3fc5d21f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5902f8016f90e7cbb936/download)
    [Logs](https://api.biosimulations.org/logs/677d5902f8016f90e7cbb936?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5902f8016f90e7cbb936)

    HTTP response: 201| +|[01012-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01012-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d590967468f9f3fc5d231/download)
    [Logs](https://api.biosimulations.org/logs/677d590967468f9f3fc5d231?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d590967468f9f3fc5d231)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5907f8016f90e7cbb945/download)
    [Logs](https://api.biosimulations.org/logs/677d5907f8016f90e7cbb945?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5907f8016f90e7cbb945)

    HTTP response: 201| +|[01013-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01013-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d590f3e750b90a42655b1/download)
    [Logs](https://api.biosimulations.org/logs/677d590f3e750b90a42655b1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d590f3e750b90a42655b1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d590cf8016f90e7cbb95b/download)
    [Logs](https://api.biosimulations.org/logs/677d590cf8016f90e7cbb95b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d590cf8016f90e7cbb95b)

    HTTP response: 201| +|[01014-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01014-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59143e750b90a42655c1/download)
    [Logs](https://api.biosimulations.org/logs/677d59143e750b90a42655c1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59143e750b90a42655c1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59113e750b90a42655b7/download)
    [Logs](https://api.biosimulations.org/logs/677d59113e750b90a42655b7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59113e750b90a42655b7)

    HTTP response: 201| +|[01015-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01015-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5919f8016f90e7cbb97d/download)
    [Logs](https://api.biosimulations.org/logs/677d5919f8016f90e7cbb97d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5919f8016f90e7cbb97d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59173e750b90a42655ca/download)
    [Logs](https://api.biosimulations.org/logs/677d59173e750b90a42655ca?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59173e750b90a42655ca)

    HTTP response: 201| +|[01016-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01016-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d591ff8016f90e7cbb9b9/download)
    [Logs](https://api.biosimulations.org/logs/677d591ff8016f90e7cbb9b9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d591ff8016f90e7cbb9b9)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d591c67468f9f3fc5d270/download)
    [Logs](https://api.biosimulations.org/logs/677d591c67468f9f3fc5d270?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d591c67468f9f3fc5d270)

    HTTP response: 201| +|[01017-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01017-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d592367468f9f3fc5d294/download)
    [Logs](https://api.biosimulations.org/logs/677d592367468f9f3fc5d294?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d592367468f9f3fc5d294)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59223e750b90a42655fb/download)
    [Logs](https://api.biosimulations.org/logs/677d59223e750b90a42655fb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59223e750b90a42655fb)

    HTTP response: 201| +|[01018-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01018-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5928f8016f90e7cbb9d1/download)
    [Logs](https://api.biosimulations.org/logs/677d5928f8016f90e7cbb9d1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5928f8016f90e7cbb9d1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59253e750b90a4265613/download)
    [Logs](https://api.biosimulations.org/logs/677d59253e750b90a4265613?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59253e750b90a4265613)

    HTTP response: 201| +|[01019-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01019-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d592b67468f9f3fc5d2ae/download)
    [Logs](https://api.biosimulations.org/logs/677d592b67468f9f3fc5d2ae?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d592b67468f9f3fc5d2ae)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d592a3e750b90a4265618/download)
    [Logs](https://api.biosimulations.org/logs/677d592a3e750b90a4265618?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d592a3e750b90a4265618)

    HTTP response: 201| +|[01020-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01020-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59303e750b90a4265641/download)
    [Logs](https://api.biosimulations.org/logs/677d59303e750b90a4265641?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59303e750b90a4265641)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d592ef8016f90e7cbb9f6/download)
    [Logs](https://api.biosimulations.org/logs/677d592ef8016f90e7cbb9f6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d592ef8016f90e7cbb9f6)

    HTTP response: 201| +|[01021-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01021-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5933f8016f90e7cbba09/download)
    [Logs](https://api.biosimulations.org/logs/677d5933f8016f90e7cbba09?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5933f8016f90e7cbba09)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5932f8016f90e7cbba02/download)
    [Logs](https://api.biosimulations.org/logs/677d5932f8016f90e7cbba02?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5932f8016f90e7cbba02)

    HTTP response: 201| +|[01022-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01022-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5937f8016f90e7cbba16/download)
    [Logs](https://api.biosimulations.org/logs/677d5937f8016f90e7cbba16?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5937f8016f90e7cbba16)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59353e750b90a4265655/download)
    [Logs](https://api.biosimulations.org/logs/677d59353e750b90a4265655?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59353e750b90a4265655)

    HTTP response: 201| +|[01023-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01023-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d593cf8016f90e7cbba2a/download)
    [Logs](https://api.biosimulations.org/logs/677d593cf8016f90e7cbba2a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d593cf8016f90e7cbba2a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d593a3e750b90a4265660/download)
    [Logs](https://api.biosimulations.org/logs/677d593a3e750b90a4265660?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d593a3e750b90a4265660)

    HTTP response: 201| +|[01024-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01024-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59413e750b90a426568e/download)
    [Logs](https://api.biosimulations.org/logs/677d59413e750b90a426568e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59413e750b90a426568e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d593ff8016f90e7cbba3a/download)
    [Logs](https://api.biosimulations.org/logs/677d593ff8016f90e7cbba3a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d593ff8016f90e7cbba3a)

    HTTP response: 201| +|[01025-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01025-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5946f8016f90e7cbba5f/download)
    [Logs](https://api.biosimulations.org/logs/677d5946f8016f90e7cbba5f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5946f8016f90e7cbba5f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59443e750b90a42656a4/download)
    [Logs](https://api.biosimulations.org/logs/677d59443e750b90a42656a4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59443e750b90a42656a4)

    HTTP response: 201| +|[01026-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01026-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d594c67468f9f3fc5d35a/download)
    [Logs](https://api.biosimulations.org/logs/677d594c67468f9f3fc5d35a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d594c67468f9f3fc5d35a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d594967468f9f3fc5d34a/download)
    [Logs](https://api.biosimulations.org/logs/677d594967468f9f3fc5d34a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d594967468f9f3fc5d34a)

    HTTP response: 201| +|[01027-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01027-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d595167468f9f3fc5d372/download)
    [Logs](https://api.biosimulations.org/logs/677d595167468f9f3fc5d372?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d595167468f9f3fc5d372)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d594e3e750b90a42656d7/download)
    [Logs](https://api.biosimulations.org/logs/677d594e3e750b90a42656d7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d594e3e750b90a42656d7)

    HTTP response: 201| +|[01028-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01028-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5958f8016f90e7cbba9f/download)
    [Logs](https://api.biosimulations.org/logs/677d5958f8016f90e7cbba9f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5958f8016f90e7cbba9f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59553e750b90a42656f5/download)
    [Logs](https://api.biosimulations.org/logs/677d59553e750b90a42656f5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59553e750b90a42656f5)

    HTTP response: 201| +|[01029-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01029-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d595ef8016f90e7cbbab0/download)
    [Logs](https://api.biosimulations.org/logs/677d595ef8016f90e7cbbab0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d595ef8016f90e7cbbab0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d595b3e750b90a4265713/download)
    [Logs](https://api.biosimulations.org/logs/677d595b3e750b90a4265713?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d595b3e750b90a4265713)

    HTTP response: 201| +|[01030-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01030-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59633e750b90a4265734/download)
    [Logs](https://api.biosimulations.org/logs/677d59633e750b90a4265734?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59633e750b90a4265734)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59613e750b90a426572a/download)
    [Logs](https://api.biosimulations.org/logs/677d59613e750b90a426572a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59613e750b90a426572a)

    HTTP response: 201| +|[01031-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01031-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59683e750b90a4265748/download)
    [Logs](https://api.biosimulations.org/logs/677d59683e750b90a4265748?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59683e750b90a4265748)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59663e750b90a426573e/download)
    [Logs](https://api.biosimulations.org/logs/677d59663e750b90a426573e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59663e750b90a426573e)

    HTTP response: 201| +|[01032-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01032-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d596e3e750b90a4265758/download)
    [Logs](https://api.biosimulations.org/logs/677d596e3e750b90a4265758?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d596e3e750b90a4265758)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d596cf8016f90e7cbbae3/download)
    [Logs](https://api.biosimulations.org/logs/677d596cf8016f90e7cbbae3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d596cf8016f90e7cbbae3)

    HTTP response: 201| +|[01033-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01033-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d597367468f9f3fc5d3e5/download)
    [Logs](https://api.biosimulations.org/logs/677d597367468f9f3fc5d3e5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d597367468f9f3fc5d3e5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5971f8016f90e7cbbaf5/download)
    [Logs](https://api.biosimulations.org/logs/677d5971f8016f90e7cbbaf5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5971f8016f90e7cbbaf5)

    HTTP response: 201| +|[01034-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01034-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d597a3e750b90a4265788/download)
    [Logs](https://api.biosimulations.org/logs/677d597a3e750b90a4265788?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d597a3e750b90a4265788)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d597767468f9f3fc5d3f0/download)
    [Logs](https://api.biosimulations.org/logs/677d597767468f9f3fc5d3f0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d597767468f9f3fc5d3f0)

    HTTP response: 201| +|[01035-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01035-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d598167468f9f3fc5d418/download)
    [Logs](https://api.biosimulations.org/logs/677d598167468f9f3fc5d418?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d598167468f9f3fc5d418)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d597ef8016f90e7cbbb23/download)
    [Logs](https://api.biosimulations.org/logs/677d597ef8016f90e7cbbb23?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d597ef8016f90e7cbbb23)

    HTTP response: 201| +|[01036-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01036-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d598667468f9f3fc5d432/download)
    [Logs](https://api.biosimulations.org/logs/677d598667468f9f3fc5d432?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d598667468f9f3fc5d432)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d598467468f9f3fc5d41e/download)
    [Logs](https://api.biosimulations.org/logs/677d598467468f9f3fc5d41e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d598467468f9f3fc5d41e)

    HTTP response: 201| +|[01037-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01037-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d598b3e750b90a42657bd/download)
    [Logs](https://api.biosimulations.org/logs/677d598b3e750b90a42657bd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d598b3e750b90a42657bd)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59893e750b90a42657af/download)
    [Logs](https://api.biosimulations.org/logs/677d59893e750b90a42657af?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59893e750b90a42657af)

    HTTP response: 201| +|[01038-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01038-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59903e750b90a42657cf/download)
    [Logs](https://api.biosimulations.org/logs/677d59903e750b90a42657cf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59903e750b90a42657cf)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d598ef8016f90e7cbbb5e/download)
    [Logs](https://api.biosimulations.org/logs/677d598ef8016f90e7cbbb5e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d598ef8016f90e7cbbb5e)

    HTTP response: 201| +|[01039-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01039-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5996f8016f90e7cbbb7c/download)
    [Logs](https://api.biosimulations.org/logs/677d5996f8016f90e7cbbb7c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5996f8016f90e7cbbb7c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59933e750b90a42657dd/download)
    [Logs](https://api.biosimulations.org/logs/677d59933e750b90a42657dd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59933e750b90a42657dd)

    HTTP response: 201| +|[01040-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01040-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d599b3e750b90a42657fc/download)
    [Logs](https://api.biosimulations.org/logs/677d599b3e750b90a42657fc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d599b3e750b90a42657fc)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d599967468f9f3fc5d46f/download)
    [Logs](https://api.biosimulations.org/logs/677d599967468f9f3fc5d46f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d599967468f9f3fc5d46f)

    HTTP response: 201| +|[01041-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01041-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59a13e750b90a4265819/download)
    [Logs](https://api.biosimulations.org/logs/677d59a13e750b90a4265819?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59a13e750b90a4265819)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d599e67468f9f3fc5d47d/download)
    [Logs](https://api.biosimulations.org/logs/677d599e67468f9f3fc5d47d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d599e67468f9f3fc5d47d)

    HTTP response: 201| +|[01042-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01042-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59a63e750b90a4265830/download)
    [Logs](https://api.biosimulations.org/logs/677d59a63e750b90a4265830?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59a63e750b90a4265830)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59a3f8016f90e7cbbbb6/download)
    [Logs](https://api.biosimulations.org/logs/677d59a3f8016f90e7cbbbb6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59a3f8016f90e7cbbbb6)

    HTTP response: 201| +|[01043-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01043-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59abf8016f90e7cbbbcf/download)
    [Logs](https://api.biosimulations.org/logs/677d59abf8016f90e7cbbbcf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59abf8016f90e7cbbbcf)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59a9f8016f90e7cbbbc6/download)
    [Logs](https://api.biosimulations.org/logs/677d59a9f8016f90e7cbbbc6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59a9f8016f90e7cbbbc6)

    HTTP response: 201| +|[01044-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01044-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = kf + -0.75' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d59b03e750b90a4265856/download)
    [Logs](https://api.biosimulations.org/logs/677d59b03e750b90a4265856?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59b03e750b90a4265856)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'kf' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d59ae67468f9f3fc5d4ae/download)
    [Logs](https://api.biosimulations.org/logs/677d59ae67468f9f3fc5d4ae?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59ae67468f9f3fc5d4ae)

    HTTP response: 201| +|[01045-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01045-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59b567468f9f3fc5d4c1/download)
    [Logs](https://api.biosimulations.org/logs/677d59b567468f9f3fc5d4c1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59b567468f9f3fc5d4c1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59b33e750b90a426585d/download)
    [Logs](https://api.biosimulations.org/logs/677d59b33e750b90a426585d?includeOutput=true)
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    HTTP response: 201| +|[01046-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01046-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59ba3e750b90a426587b/download)
    [Logs](https://api.biosimulations.org/logs/677d59ba3e750b90a426587b?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59b867468f9f3fc5d4d4/download)
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    HTTP response: 201| +|[01047-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01047-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59bf3e750b90a426589c/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59bd67468f9f3fc5d4e5/download)
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    HTTP response: 201| +|[01048-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01048-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59c43e750b90a42658b4/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59c2f8016f90e7cbbc25/download)
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    HTTP response: 201| +|[01049-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01049-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59cbf8016f90e7cbbc49/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59c867468f9f3fc5d51d/download)
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    HTTP response: 201| +|[01050-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01050-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59d03e750b90a42658d8/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59cd67468f9f3fc5d539/download)
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    HTTP response: 201| +|[01051-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01051-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59d6f8016f90e7cbbc6d/download)
    [Logs](https://api.biosimulations.org/logs/677d59d6f8016f90e7cbbc6d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59d6f8016f90e7cbbc6d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59d3f8016f90e7cbbc64/download)
    [Logs](https://api.biosimulations.org/logs/677d59d3f8016f90e7cbbc64?includeOutput=true)
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    HTTP response: 201| +|[01052-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01052-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59ddf8016f90e7cbbc84/download)
    [Logs](https://api.biosimulations.org/logs/677d59ddf8016f90e7cbbc84?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59da3e750b90a42658fb/download)
    [Logs](https://api.biosimulations.org/logs/677d59da3e750b90a42658fb?includeOutput=true)
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    HTTP response: 201| +|[01053-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01053-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59e2f8016f90e7cbbc99/download)
    [Logs](https://api.biosimulations.org/logs/677d59e2f8016f90e7cbbc99?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59e067468f9f3fc5d586/download)
    [Logs](https://api.biosimulations.org/logs/677d59e067468f9f3fc5d586?includeOutput=true)
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    HTTP response: 201| +|[01054-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01054-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d59e767468f9f3fc5d5a4/download)
    [Logs](https://api.biosimulations.org/logs/677d59e767468f9f3fc5d5a4?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59e53e750b90a4265926/download)
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    HTTP response: 201| +|[01055-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01055-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59eef8016f90e7cbbcb6/download)
    [Logs](https://api.biosimulations.org/logs/677d59eef8016f90e7cbbcb6?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59eb67468f9f3fc5d5a9/download)
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    HTTP response: 201| +|[01056-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01056-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59f367468f9f3fc5d5cd/download)
    [Logs](https://api.biosimulations.org/logs/677d59f367468f9f3fc5d5cd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59f367468f9f3fc5d5cd)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59f067468f9f3fc5d5c8/download)
    [Logs](https://api.biosimulations.org/logs/677d59f067468f9f3fc5d5c8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59f067468f9f3fc5d5c8)

    HTTP response: 201| +|[01057-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01057-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d59fa3e750b90a4265972/download)
    [Logs](https://api.biosimulations.org/logs/677d59fa3e750b90a4265972?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59f7f8016f90e7cbbcd3/download)
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    [View](https://api.biosimulations.org/runs/677d59f7f8016f90e7cbbcd3)

    HTTP response: 201| +|[01058-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01058-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a003e750b90a4265986/download)
    [Logs](https://api.biosimulations.org/logs/677d5a003e750b90a4265986?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a003e750b90a4265986)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d59fe67468f9f3fc5d5ff/download)
    [Logs](https://api.biosimulations.org/logs/677d59fe67468f9f3fc5d5ff?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d59fe67468f9f3fc5d5ff)

    HTTP response: 201| +|[01059-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01059-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a05f8016f90e7cbbd0a/download)
    [Logs](https://api.biosimulations.org/logs/677d5a05f8016f90e7cbbd0a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a05f8016f90e7cbbd0a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a0267468f9f3fc5d60d/download)
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    HTTP response: 201| +|[01060-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01060-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a0a67468f9f3fc5d62a/download)
    [Logs](https://api.biosimulations.org/logs/677d5a0a67468f9f3fc5d62a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a0a67468f9f3fc5d62a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a073e750b90a42659b2/download)
    [Logs](https://api.biosimulations.org/logs/677d5a073e750b90a42659b2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a073e750b90a42659b2)

    HTTP response: 201| +|[01061-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01061-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a103e750b90a42659c6/download)
    [Logs](https://api.biosimulations.org/logs/677d5a103e750b90a42659c6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a103e750b90a42659c6)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a0e67468f9f3fc5d63f/download)
    [Logs](https://api.biosimulations.org/logs/677d5a0e67468f9f3fc5d63f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a0e67468f9f3fc5d63f)

    HTTP response: 201| +|[01062-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01062-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a163e750b90a42659d5/download)
    [Logs](https://api.biosimulations.org/logs/677d5a163e750b90a42659d5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a163e750b90a42659d5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a13f8016f90e7cbbd37/download)
    [Logs](https://api.biosimulations.org/logs/677d5a13f8016f90e7cbbd37?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a13f8016f90e7cbbd37)

    HTTP response: 201| +|[01063-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01063-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a1b3e750b90a42659f1/download)
    [Logs](https://api.biosimulations.org/logs/677d5a1b3e750b90a42659f1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a1b3e750b90a42659f1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a18f8016f90e7cbbd55/download)
    [Logs](https://api.biosimulations.org/logs/677d5a18f8016f90e7cbbd55?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a18f8016f90e7cbbd55)

    HTTP response: 201| +|[01064-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01064-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a21f8016f90e7cbbd69/download)
    [Logs](https://api.biosimulations.org/logs/677d5a21f8016f90e7cbbd69?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a21f8016f90e7cbbd69)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a1f67468f9f3fc5d684/download)
    [Logs](https://api.biosimulations.org/logs/677d5a1f67468f9f3fc5d684?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a1f67468f9f3fc5d684)

    HTTP response: 201| +|[01065-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01065-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a263e750b90a4265a24/download)
    [Logs](https://api.biosimulations.org/logs/677d5a263e750b90a4265a24?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a263e750b90a4265a24)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a2467468f9f3fc5d691/download)
    [Logs](https://api.biosimulations.org/logs/677d5a2467468f9f3fc5d691?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a2467468f9f3fc5d691)

    HTTP response: 201| +|[01066-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01066-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a2c3e750b90a4265a37/download)
    [Logs](https://api.biosimulations.org/logs/677d5a2c3e750b90a4265a37?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a2c3e750b90a4265a37)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a293e750b90a4265a2b/download)
    [Logs](https://api.biosimulations.org/logs/677d5a293e750b90a4265a2b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a293e750b90a4265a2b)

    HTTP response: 201| +|[01067-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01067-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a313e750b90a4265a44/download)
    [Logs](https://api.biosimulations.org/logs/677d5a313e750b90a4265a44?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a313e750b90a4265a44)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a2ef8016f90e7cbbdad/download)
    [Logs](https://api.biosimulations.org/logs/677d5a2ef8016f90e7cbbdad?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a2ef8016f90e7cbbdad)

    HTTP response: 201| +|[01068-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01068-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a353e750b90a4265a55/download)
    [Logs](https://api.biosimulations.org/logs/677d5a353e750b90a4265a55?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a353e750b90a4265a55)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a333e750b90a4265a50/download)
    [Logs](https://api.biosimulations.org/logs/677d5a333e750b90a4265a50?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a333e750b90a4265a50)

    HTTP response: 201| +|[01069-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01069-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a3bf8016f90e7cbbde3/download)
    [Logs](https://api.biosimulations.org/logs/677d5a3bf8016f90e7cbbde3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a3bf8016f90e7cbbde3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a38f8016f90e7cbbdd1/download)
    [Logs](https://api.biosimulations.org/logs/677d5a38f8016f90e7cbbdd1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a38f8016f90e7cbbdd1)

    HTTP response: 201| +|[01070-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01070-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a403e750b90a4265a87/download)
    [Logs](https://api.biosimulations.org/logs/677d5a403e750b90a4265a87?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a403e750b90a4265a87)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a3d3e750b90a4265a79/download)
    [Logs](https://api.biosimulations.org/logs/677d5a3d3e750b90a4265a79?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a3d3e750b90a4265a79)

    HTTP response: 201| +|[01071-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01071-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a45f8016f90e7cbbe06/download)
    [Logs](https://api.biosimulations.org/logs/677d5a45f8016f90e7cbbe06?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a45f8016f90e7cbbe06)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a433e750b90a4265a8f/download)
    [Logs](https://api.biosimulations.org/logs/677d5a433e750b90a4265a8f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a433e750b90a4265a8f)

    HTTP response: 201| +|[01072-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01072-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a4a67468f9f3fc5d723/download)
    [Logs](https://api.biosimulations.org/logs/677d5a4a67468f9f3fc5d723?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a4a67468f9f3fc5d723)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a483e750b90a4265aa2/download)
    [Logs](https://api.biosimulations.org/logs/677d5a483e750b90a4265aa2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a483e750b90a4265aa2)

    HTTP response: 201| +|[01073-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01073-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a50f8016f90e7cbbe33/download)
    [Logs](https://api.biosimulations.org/logs/677d5a50f8016f90e7cbbe33?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a50f8016f90e7cbbe33)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a4d3e750b90a4265abc/download)
    [Logs](https://api.biosimulations.org/logs/677d5a4d3e750b90a4265abc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a4d3e750b90a4265abc)

    HTTP response: 201| +|[01074-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01074-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a5667468f9f3fc5d772/download)
    [Logs](https://api.biosimulations.org/logs/677d5a5667468f9f3fc5d772?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a5667468f9f3fc5d772)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a52f8016f90e7cbbe47/download)
    [Logs](https://api.biosimulations.org/logs/677d5a52f8016f90e7cbbe47?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a52f8016f90e7cbbe47)

    HTTP response: 201| +|[01075-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01075-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a5bf8016f90e7cbbe7b/download)
    [Logs](https://api.biosimulations.org/logs/677d5a5bf8016f90e7cbbe7b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a5bf8016f90e7cbbe7b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a583e750b90a4265af7/download)
    [Logs](https://api.biosimulations.org/logs/677d5a583e750b90a4265af7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a583e750b90a4265af7)

    HTTP response: 201| +|[01076-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01076-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a60f8016f90e7cbbe86/download)
    [Logs](https://api.biosimulations.org/logs/677d5a60f8016f90e7cbbe86?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a60f8016f90e7cbbe86)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a5ef8016f90e7cbbe83/download)
    [Logs](https://api.biosimulations.org/logs/677d5a5ef8016f90e7cbbe83?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a5ef8016f90e7cbbe83)

    HTTP response: 201| +|[01077-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01077-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a66f8016f90e7cbbea5/download)
    [Logs](https://api.biosimulations.org/logs/677d5a66f8016f90e7cbbea5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a66f8016f90e7cbbea5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a6367468f9f3fc5d79d/download)
    [Logs](https://api.biosimulations.org/logs/677d5a6367468f9f3fc5d79d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a6367468f9f3fc5d79d)

    HTTP response: 201| +|[01078-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01078-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a6ef8016f90e7cbbec1/download)
    [Logs](https://api.biosimulations.org/logs/677d5a6ef8016f90e7cbbec1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a6ef8016f90e7cbbec1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a6af8016f90e7cbbeb8/download)
    [Logs](https://api.biosimulations.org/logs/677d5a6af8016f90e7cbbeb8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a6af8016f90e7cbbeb8)

    HTTP response: 201| +|[01079-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01079-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a74f8016f90e7cbbedd/download)
    [Logs](https://api.biosimulations.org/logs/677d5a74f8016f90e7cbbedd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a74f8016f90e7cbbedd)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a71f8016f90e7cbbed6/download)
    [Logs](https://api.biosimulations.org/logs/677d5a71f8016f90e7cbbed6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a71f8016f90e7cbbed6)

    HTTP response: 201| +|[01080-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01080-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a793e750b90a4265b65/download)
    [Logs](https://api.biosimulations.org/logs/677d5a793e750b90a4265b65?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a793e750b90a4265b65)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a7767468f9f3fc5d7f2/download)
    [Logs](https://api.biosimulations.org/logs/677d5a7767468f9f3fc5d7f2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a7767468f9f3fc5d7f2)

    HTTP response: 201| +|[01081-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01081-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a7ff8016f90e7cbbf00/download)
    [Logs](https://api.biosimulations.org/logs/677d5a7ff8016f90e7cbbf00?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a7ff8016f90e7cbbf00)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a7d3e750b90a4265b6f/download)
    [Logs](https://api.biosimulations.org/logs/677d5a7d3e750b90a4265b6f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a7d3e750b90a4265b6f)

    HTTP response: 201| +|[01082-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01082-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5a8567468f9f3fc5d824/download)
    [Logs](https://api.biosimulations.org/logs/677d5a8567468f9f3fc5d824?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a8567468f9f3fc5d824)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a823e750b90a4265b8b/download)
    [Logs](https://api.biosimulations.org/logs/677d5a823e750b90a4265b8b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a823e750b90a4265b8b)

    HTTP response: 201| +|[01083-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01083-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d5a8a67468f9f3fc5d833/download)
    [Logs](https://api.biosimulations.org/logs/677d5a8a67468f9f3fc5d833?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a8a67468f9f3fc5d833)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a883e750b90a4265ba7/download)
    [Logs](https://api.biosimulations.org/logs/677d5a883e750b90a4265ba7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a883e750b90a4265ba7)

    HTTP response: 201| +|[01084-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01084-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = (k3 + 1) * S1 + -1 * T' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d5a8f3e750b90a4265bc2/download)
    [Logs](https://api.biosimulations.org/logs/677d5a8f3e750b90a4265bc2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a8f3e750b90a4265bc2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a8c67468f9f3fc5d841/download)
    [Logs](https://api.biosimulations.org/logs/677d5a8c67468f9f3fc5d841?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a8c67468f9f3fc5d841)

    HTTP response: 201| +|[01085-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01085-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d5a95f8016f90e7cbbf4d/download)
    [Logs](https://api.biosimulations.org/logs/677d5a95f8016f90e7cbbf4d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a95f8016f90e7cbbf4d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a9267468f9f3fc5d851/download)
    [Logs](https://api.biosimulations.org/logs/677d5a9267468f9f3fc5d851?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a9267468f9f3fc5d851)

    HTTP response: 201| +|[01086-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01086-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = S4 + -1 * S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d5a9af8016f90e7cbbf61/download)
    [Logs](https://api.biosimulations.org/logs/677d5a9af8016f90e7cbbf61?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a9af8016f90e7cbbf61)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a98f8016f90e7cbbf5a/download)
    [Logs](https://api.biosimulations.org/logs/677d5a98f8016f90e7cbbf5a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a98f8016f90e7cbbf5a)

    HTTP response: 201| +|[01087-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01087-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5aa03e750b90a4265bfa/download)
    [Logs](https://api.biosimulations.org/logs/677d5aa03e750b90a4265bfa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5aa03e750b90a4265bfa)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5a9d3e750b90a4265bf6/download)
    [Logs](https://api.biosimulations.org/logs/677d5a9d3e750b90a4265bf6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5a9d3e750b90a4265bf6)

    HTTP response: 201| +|[01088-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01088-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5aa567468f9f3fc5d8a1/download)
    [Logs](https://api.biosimulations.org/logs/677d5aa567468f9f3fc5d8a1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5aa567468f9f3fc5d8a1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5aa3f8016f90e7cbbf8d/download)
    [Logs](https://api.biosimulations.org/logs/677d5aa3f8016f90e7cbbf8d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5aa3f8016f90e7cbbf8d)

    HTTP response: 201| +|[01089-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01089-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5aa967468f9f3fc5d8b5/download)
    [Logs](https://api.biosimulations.org/logs/677d5aa967468f9f3fc5d8b5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5aa967468f9f3fc5d8b5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5aa73e750b90a4265c1d/download)
    [Logs](https://api.biosimulations.org/logs/677d5aa73e750b90a4265c1d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5aa73e750b90a4265c1d)

    HTTP response: 201| +|[01090-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01090-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ab13e750b90a4265c44/download)
    [Logs](https://api.biosimulations.org/logs/677d5ab13e750b90a4265c44?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ab13e750b90a4265c44)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5aaef8016f90e7cbbfbd/download)
    [Logs](https://api.biosimulations.org/logs/677d5aaef8016f90e7cbbfbd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5aaef8016f90e7cbbfbd)

    HTTP response: 201| +|[01091-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01091-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ab63e750b90a4265c55/download)
    [Logs](https://api.biosimulations.org/logs/677d5ab63e750b90a4265c55?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ab63e750b90a4265c55)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ab43e750b90a4265c50/download)
    [Logs](https://api.biosimulations.org/logs/677d5ab43e750b90a4265c50?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ab43e750b90a4265c50)

    HTTP response: 201| +|[01092-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01092-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5abb67468f9f3fc5d8f5/download)
    [Logs](https://api.biosimulations.org/logs/677d5abb67468f9f3fc5d8f5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5abb67468f9f3fc5d8f5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ab83e750b90a4265c61/download)
    [Logs](https://api.biosimulations.org/logs/677d5ab83e750b90a4265c61?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ab83e750b90a4265c61)

    HTTP response: 201| +|[01093-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01093-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ac03e750b90a4265c8c/download)
    [Logs](https://api.biosimulations.org/logs/677d5ac03e750b90a4265c8c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ac03e750b90a4265c8c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5abd67468f9f3fc5d8fc/download)
    [Logs](https://api.biosimulations.org/logs/677d5abd67468f9f3fc5d8fc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5abd67468f9f3fc5d8fc)

    HTTP response: 201| +|[01094-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01094-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ac4f8016f90e7cbc009/download)
    [Logs](https://api.biosimulations.org/logs/677d5ac4f8016f90e7cbc009?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ac4f8016f90e7cbc009)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ac23e750b90a4265c95/download)
    [Logs](https://api.biosimulations.org/logs/677d5ac23e750b90a4265c95?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ac23e750b90a4265c95)

    HTTP response: 201| +|[01095-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01095-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ac93e750b90a4265caf/download)
    [Logs](https://api.biosimulations.org/logs/677d5ac93e750b90a4265caf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ac93e750b90a4265caf)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ac767468f9f3fc5d91d/download)
    [Logs](https://api.biosimulations.org/logs/677d5ac767468f9f3fc5d91d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ac767468f9f3fc5d91d)

    HTTP response: 201| +|[01096-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01096-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5acef8016f90e7cbc029/download)
    [Logs](https://api.biosimulations.org/logs/677d5acef8016f90e7cbc029?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5acef8016f90e7cbc029)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5acc3e750b90a4265cb5/download)
    [Logs](https://api.biosimulations.org/logs/677d5acc3e750b90a4265cb5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5acc3e750b90a4265cb5)

    HTTP response: 201| +|[01097-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01097-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ad367468f9f3fc5d94c/download)
    [Logs](https://api.biosimulations.org/logs/677d5ad367468f9f3fc5d94c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ad367468f9f3fc5d94c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ad13e750b90a4265ccc/download)
    [Logs](https://api.biosimulations.org/logs/677d5ad13e750b90a4265ccc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ad13e750b90a4265ccc)

    HTTP response: 201| +|[01098-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01098-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ad967468f9f3fc5d968/download)
    [Logs](https://api.biosimulations.org/logs/677d5ad967468f9f3fc5d968?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ad967468f9f3fc5d968)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ad6f8016f90e7cbc053/download)
    [Logs](https://api.biosimulations.org/logs/677d5ad6f8016f90e7cbc053?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ad6f8016f90e7cbc053)

    HTTP response: 201| +|[01099-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01099-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5adef8016f90e7cbc078/download)
    [Logs](https://api.biosimulations.org/logs/677d5adef8016f90e7cbc078?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5adef8016f90e7cbc078)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5adbf8016f90e7cbc05d/download)
    [Logs](https://api.biosimulations.org/logs/677d5adbf8016f90e7cbc05d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5adbf8016f90e7cbc05d)

    HTTP response: 201| +|[01100-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01100-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ae367468f9f3fc5d9a3/download)
    [Logs](https://api.biosimulations.org/logs/677d5ae367468f9f3fc5d9a3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ae367468f9f3fc5d9a3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ae13e750b90a4265d15/download)
    [Logs](https://api.biosimulations.org/logs/677d5ae13e750b90a4265d15?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ae13e750b90a4265d15)

    HTTP response: 201| +|[01101-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01101-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ae93e750b90a4265d26/download)
    [Logs](https://api.biosimulations.org/logs/677d5ae93e750b90a4265d26?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ae93e750b90a4265d26)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ae6f8016f90e7cbc0a0/download)
    [Logs](https://api.biosimulations.org/logs/677d5ae6f8016f90e7cbc0a0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ae6f8016f90e7cbc0a0)

    HTTP response: 201| +|[01102-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01102-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5aeef8016f90e7cbc0b8/download)
    [Logs](https://api.biosimulations.org/logs/677d5aeef8016f90e7cbc0b8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5aeef8016f90e7cbc0b8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5aebf8016f90e7cbc0ab/download)
    [Logs](https://api.biosimulations.org/logs/677d5aebf8016f90e7cbc0ab?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5aebf8016f90e7cbc0ab)

    HTTP response: 201| +|[01103-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01103-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5af53e750b90a4265d55/download)
    [Logs](https://api.biosimulations.org/logs/677d5af53e750b90a4265d55?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5af53e750b90a4265d55)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5af13e750b90a4265d48/download)
    [Logs](https://api.biosimulations.org/logs/677d5af13e750b90a4265d48?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5af13e750b90a4265d48)

    HTTP response: 201| +|[01104-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01104-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5afa3e750b90a4265d6b/download)
    [Logs](https://api.biosimulations.org/logs/677d5afa3e750b90a4265d6b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5afa3e750b90a4265d6b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5af83e750b90a4265d62/download)
    [Logs](https://api.biosimulations.org/logs/677d5af83e750b90a4265d62?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5af83e750b90a4265d62)

    HTTP response: 201| +|[01105-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01105-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5aff3e750b90a4265d78/download)
    [Logs](https://api.biosimulations.org/logs/677d5aff3e750b90a4265d78?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5aff3e750b90a4265d78)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5afdf8016f90e7cbc0f7/download)
    [Logs](https://api.biosimulations.org/logs/677d5afdf8016f90e7cbc0f7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5afdf8016f90e7cbc0f7)

    HTTP response: 201| +|[01106-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01106-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b0467468f9f3fc5da42/download)
    [Logs](https://api.biosimulations.org/logs/677d5b0467468f9f3fc5da42?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b0467468f9f3fc5da42)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b0167468f9f3fc5da0d/download)
    [Logs](https://api.biosimulations.org/logs/677d5b0167468f9f3fc5da0d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b0167468f9f3fc5da0d)

    HTTP response: 201| +|[01107-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01107-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b09f8016f90e7cbc126/download)
    [Logs](https://api.biosimulations.org/logs/677d5b09f8016f90e7cbc126?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b09f8016f90e7cbc126)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b07f8016f90e7cbc117/download)
    [Logs](https://api.biosimulations.org/logs/677d5b07f8016f90e7cbc117?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b07f8016f90e7cbc117)

    HTTP response: 201| +|[01108-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01108-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = X - p1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d5b0f67468f9f3fc5da57/download)
    [Logs](https://api.biosimulations.org/logs/677d5b0f67468f9f3fc5da57?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b0f67468f9f3fc5da57)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'p1' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5b0d3e750b90a4265db8/download)
    [Logs](https://api.biosimulations.org/logs/677d5b0d3e750b90a4265db8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b0d3e750b90a4265db8)

    HTTP response: 201| +|[01109-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01109-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b143e750b90a4265dd0/download)
    [Logs](https://api.biosimulations.org/logs/677d5b143e750b90a4265dd0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b143e750b90a4265dd0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b11f8016f90e7cbc139/download)
    [Logs](https://api.biosimulations.org/logs/677d5b11f8016f90e7cbc139?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b11f8016f90e7cbc139)

    HTTP response: 201| +|[01110-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01110-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b193e750b90a4265dec/download)
    [Logs](https://api.biosimulations.org/logs/677d5b193e750b90a4265dec?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b193e750b90a4265dec)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b16f8016f90e7cbc149/download)
    [Logs](https://api.biosimulations.org/logs/677d5b16f8016f90e7cbc149?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b16f8016f90e7cbc149)

    HTTP response: 201| +|[01111-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01111-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b1d3e750b90a4265df9/download)
    [Logs](https://api.biosimulations.org/logs/677d5b1d3e750b90a4265df9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b1d3e750b90a4265df9)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b1bf8016f90e7cbc16f/download)
    [Logs](https://api.biosimulations.org/logs/677d5b1bf8016f90e7cbc16f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b1bf8016f90e7cbc16f)

    HTTP response: 201| +|[01112-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01112-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b2267468f9f3fc5daae/download)
    [Logs](https://api.biosimulations.org/logs/677d5b2267468f9f3fc5daae?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b2267468f9f3fc5daae)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b203e750b90a4265dfc/download)
    [Logs](https://api.biosimulations.org/logs/677d5b203e750b90a4265dfc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b203e750b90a4265dfc)

    HTTP response: 201| +|[01113-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01113-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b2767468f9f3fc5daca/download)
    [Logs](https://api.biosimulations.org/logs/677d5b2767468f9f3fc5daca?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b2767468f9f3fc5daca)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b24f8016f90e7cbc189/download)
    [Logs](https://api.biosimulations.org/logs/677d5b24f8016f90e7cbc189?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b24f8016f90e7cbc189)

    HTTP response: 201| +|[01114-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01114-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b2cf8016f90e7cbc1aa/download)
    [Logs](https://api.biosimulations.org/logs/677d5b2cf8016f90e7cbc1aa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b2cf8016f90e7cbc1aa)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b2af8016f90e7cbc1a1/download)
    [Logs](https://api.biosimulations.org/logs/677d5b2af8016f90e7cbc1a1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b2af8016f90e7cbc1a1)

    HTTP response: 201| +|[01115-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01115-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b323e750b90a4265e6d/download)
    [Logs](https://api.biosimulations.org/logs/677d5b323e750b90a4265e6d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b323e750b90a4265e6d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b2ff8016f90e7cbc1af/download)
    [Logs](https://api.biosimulations.org/logs/677d5b2ff8016f90e7cbc1af?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b2ff8016f90e7cbc1af)

    HTTP response: 201| +|[01116-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01116-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b373e750b90a4265e7b/download)
    [Logs](https://api.biosimulations.org/logs/677d5b373e750b90a4265e7b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b373e750b90a4265e7b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b34f8016f90e7cbc1c6/download)
    [Logs](https://api.biosimulations.org/logs/677d5b34f8016f90e7cbc1c6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b34f8016f90e7cbc1c6)

    HTTP response: 201| +|[01117-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01117-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b3c3e750b90a4265e89/download)
    [Logs](https://api.biosimulations.org/logs/677d5b3c3e750b90a4265e89?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b3c3e750b90a4265e89)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b393e750b90a4265e82/download)
    [Logs](https://api.biosimulations.org/logs/677d5b393e750b90a4265e82?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b393e750b90a4265e82)

    HTTP response: 201| +|[01118-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01118-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b41f8016f90e7cbc1ed/download)
    [Logs](https://api.biosimulations.org/logs/677d5b41f8016f90e7cbc1ed?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b41f8016f90e7cbc1ed)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b3e3e750b90a4265e8f/download)
    [Logs](https://api.biosimulations.org/logs/677d5b3e3e750b90a4265e8f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b3e3e750b90a4265e8f)

    HTTP response: 201| +|[01119-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01119-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b463e750b90a4265eb4/download)
    [Logs](https://api.biosimulations.org/logs/677d5b463e750b90a4265eb4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b463e750b90a4265eb4)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b443e750b90a4265ea3/download)
    [Logs](https://api.biosimulations.org/logs/677d5b443e750b90a4265ea3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b443e750b90a4265ea3)

    HTTP response: 201| +|[01120-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01120-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b4bf8016f90e7cbc228/download)
    [Logs](https://api.biosimulations.org/logs/677d5b4bf8016f90e7cbc228?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b4bf8016f90e7cbc228)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b4967468f9f3fc5db55/download)
    [Logs](https://api.biosimulations.org/logs/677d5b4967468f9f3fc5db55?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b4967468f9f3fc5db55)

    HTTP response: 201| +|[01121-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01121-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b503e750b90a4265ed7/download)
    [Logs](https://api.biosimulations.org/logs/677d5b503e750b90a4265ed7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b503e750b90a4265ed7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b4ef8016f90e7cbc230/download)
    [Logs](https://api.biosimulations.org/logs/677d5b4ef8016f90e7cbc230?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b4ef8016f90e7cbc230)

    HTTP response: 201| +|[01122-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01122-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b55f8016f90e7cbc24d/download)
    [Logs](https://api.biosimulations.org/logs/677d5b55f8016f90e7cbc24d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b55f8016f90e7cbc24d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b53f8016f90e7cbc241/download)
    [Logs](https://api.biosimulations.org/logs/677d5b53f8016f90e7cbc241?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b53f8016f90e7cbc241)

    HTTP response: 201| +|[01123-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01123-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b5b3e750b90a4265f0f/download)
    [Logs](https://api.biosimulations.org/logs/677d5b5b3e750b90a4265f0f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b5b3e750b90a4265f0f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b5867468f9f3fc5db9b/download)
    [Logs](https://api.biosimulations.org/logs/677d5b5867468f9f3fc5db9b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b5867468f9f3fc5db9b)

    HTTP response: 201| +|[01124-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01124-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b613e750b90a4265f1d/download)
    [Logs](https://api.biosimulations.org/logs/677d5b613e750b90a4265f1d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b613e750b90a4265f1d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b5ef8016f90e7cbc26e/download)
    [Logs](https://api.biosimulations.org/logs/677d5b5ef8016f90e7cbc26e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b5ef8016f90e7cbc26e)

    HTTP response: 201| +|[01125-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01125-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b66f8016f90e7cbc295/download)
    [Logs](https://api.biosimulations.org/logs/677d5b66f8016f90e7cbc295?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b66f8016f90e7cbc295)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b633e750b90a4265f24/download)
    [Logs](https://api.biosimulations.org/logs/677d5b633e750b90a4265f24?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b633e750b90a4265f24)

    HTTP response: 201| +|[01126-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01126-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5b6b67468f9f3fc5dbe9/download)
    [Logs](https://api.biosimulations.org/logs/677d5b6b67468f9f3fc5dbe9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b6b67468f9f3fc5dbe9)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp644941 is invalid. - Data generator submod1__subparam2_1 is invalid. - Variable submod1__subparam2 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='submod1__subparam2'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5b69f8016f90e7cbc2a8/download)
    [Logs](https://api.biosimulations.org/logs/677d5b69f8016f90e7cbc2a8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b69f8016f90e7cbc2a8)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp757318 is invalid. - Data generator submod1__subparam2_1 is invalid. - Variable submod1__subparam2 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='submod1__subparam2'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01127-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01127-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5b7067468f9f3fc5dbff/download)
    [Logs](https://api.biosimulations.org/logs/677d5b7067468f9f3fc5dbff?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b7067468f9f3fc5dbff)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp278867 is invalid. - Data generator submod1__subparam2_1 is invalid. - Variable submod1__subparam2 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='submod1__subparam2'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5b6e3e750b90a4265f61/download)
    [Logs](https://api.biosimulations.org/logs/677d5b6e3e750b90a4265f61?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b6e3e750b90a4265f61)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp347069 is invalid. - Data generator submod1__subparam2_1 is invalid. - Variable submod1__subparam2 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='submod1__subparam2'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01128-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01128-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b7567468f9f3fc5dc1e/download)
    [Logs](https://api.biosimulations.org/logs/677d5b7567468f9f3fc5dc1e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b7567468f9f3fc5dc1e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b7267468f9f3fc5dc06/download)
    [Logs](https://api.biosimulations.org/logs/677d5b7267468f9f3fc5dc06?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b7267468f9f3fc5dc06)

    HTTP response: 201| +|[01129-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01129-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5b7a67468f9f3fc5dc37/download)
    [Logs](https://api.biosimulations.org/logs/677d5b7a67468f9f3fc5dc37?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b7a67468f9f3fc5dc37)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp178083 is invalid. - Data generator sub1__S1_1 is invalid. - Variable sub1__S1_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__S1'] does not match any elements of model model_1 . - Variable sub1__S1_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='sub1__C'] does not match any elements of model model_1 . - Data generator sub2__S1_1 is invalid. - Variable sub2__S1_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__S1'] does not match any elements of model model_1 . - Variable sub2__S1_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='sub2__C'] does not match any elements of model model_1 . - Data generator sub2__sub1__S1_1 is invalid. - Variable sub2__sub1__S1_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__sub1__S1'] does not match any elements of model model_1 . - Variable sub2__sub1__S1_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='sub2__sub1__C'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5b773e750b90a4265f8d/download)
    [Logs](https://api.biosimulations.org/logs/677d5b773e750b90a4265f8d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b773e750b90a4265f8d)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp994234 is invalid. - Data generator sub1__S1_1 is invalid. - Variable sub1__S1_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__S1'] does not match any elements of model model_1 . - Variable sub1__S1_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='sub1__C'] does not match any elements of model model_1 . - Data generator sub2__S1_1 is invalid. - Variable sub2__S1_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__S1'] does not match any elements of model model_1 . - Variable sub2__S1_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='sub2__C'] does not match any elements of model model_1 . - Data generator sub2__sub1__S1_1 is invalid. - Variable sub2__sub1__S1_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__sub1__S1'] does not match any elements of model model_1 . - Variable sub2__sub1__S1_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='sub2__sub1__C'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01130-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01130-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5b7ef8016f90e7cbc2e8/download)
    [Logs](https://api.biosimulations.org/logs/677d5b7ef8016f90e7cbc2e8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b7ef8016f90e7cbc2e8)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp498271 is invalid. - Data generator sub1__S1_1 is invalid. - Variable sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__S1'] does not match any elements of model model_1 . - Data generator sub2__S1_1 is invalid. - Variable sub2__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__S1'] does not match any elements of model model_1 . - Data generator sub2__sub1__S1_1 is invalid. - Variable sub2__sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__sub1__S1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5b7cf8016f90e7cbc2dd/download)
    [Logs](https://api.biosimulations.org/logs/677d5b7cf8016f90e7cbc2dd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b7cf8016f90e7cbc2dd)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp881467 is invalid. - Data generator sub1__S1_1 is invalid. - Variable sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__S1'] does not match any elements of model model_1 . - Data generator sub2__S1_1 is invalid. - Variable sub2__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__S1'] does not match any elements of model model_1 . - Data generator sub2__sub1__S1_1 is invalid. - Variable sub2__sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__sub1__S1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01131-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01131-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5b8467468f9f3fc5dc65/download)
    [Logs](https://api.biosimulations.org/logs/677d5b8467468f9f3fc5dc65?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b8467468f9f3fc5dc65)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp307627 is invalid. - Data generator sub1__S1_1 is invalid. - Variable sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__S1'] does not match any elements of model model_1 . - Data generator sub2__S1_1 is invalid. - Variable sub2__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__S1'] does not match any elements of model model_1 . - Data generator sub2__sub1__S1_1 is invalid. - Variable sub2__sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__sub1__S1'] does not match any elements of model model_1 . - Data generator sub3__S1_1 is invalid. - Variable sub3__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__S1'] does not match any elements of model model_1 . - Data generator sub3__sub1__S1_1 is invalid. - Variable sub3__sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__sub1__S1'] does not match any elements of model model_1 . - Data generator sub3__sub2__S1_1 is invalid. - Variable sub3__sub2__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__sub2__S1'] does not match any elements of model model_1 . - Data generator sub3__sub2__sub1__S1_1 is invalid. - Variable sub3__sub2__sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__sub2__sub1__S1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5b81f8016f90e7cbc2f9/download)
    [Logs](https://api.biosimulations.org/logs/677d5b81f8016f90e7cbc2f9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b81f8016f90e7cbc2f9)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp795826 is invalid. - Data generator sub1__S1_1 is invalid. - Variable sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__S1'] does not match any elements of model model_1 . - Data generator sub2__S1_1 is invalid. - Variable sub2__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__S1'] does not match any elements of model model_1 . - Data generator sub2__sub1__S1_1 is invalid. - Variable sub2__sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__sub1__S1'] does not match any elements of model model_1 . - Data generator sub3__S1_1 is invalid. - Variable sub3__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__S1'] does not match any elements of model model_1 . - Data generator sub3__sub1__S1_1 is invalid. - Variable sub3__sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__sub1__S1'] does not match any elements of model model_1 . - Data generator sub3__sub2__S1_1 is invalid. - Variable sub3__sub2__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__sub2__S1'] does not match any elements of model model_1 . - Data generator sub3__sub2__sub1__S1_1 is invalid. - Variable sub3__sub2__sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__sub2__sub1__S1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01132-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01132-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5b8967468f9f3fc5dc7a/download)
    [Logs](https://api.biosimulations.org/logs/677d5b8967468f9f3fc5dc7a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b8967468f9f3fc5dc7a)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp999912 is invalid. - Data generator sub1__S1_1 is invalid. - Variable sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__S1'] does not match any elements of model model_1 . - Data generator sub2__S1_1 is invalid. - Variable sub2__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__S1'] does not match any elements of model model_1 . - Data generator sub2__sub1__S1_1 is invalid. - Variable sub2__sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__sub1__S1'] does not match any elements of model model_1 . - Data generator sub3__S1_1 is invalid. - Variable sub3__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__S1'] does not match any elements of model model_1 . - Data generator sub3__sub1__S1_1 is invalid. - Variable sub3__sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__sub1__S1'] does not match any elements of model model_1 . - Data generator sub3__sub2__S1_1 is invalid. - Variable sub3__sub2__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__sub2__S1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5b863e750b90a4265fc1/download)
    [Logs](https://api.biosimulations.org/logs/677d5b863e750b90a4265fc1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b863e750b90a4265fc1)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp822632 is invalid. - Data generator sub1__S1_1 is invalid. - Variable sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__S1'] does not match any elements of model model_1 . - Data generator sub2__S1_1 is invalid. - Variable sub2__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__S1'] does not match any elements of model model_1 . - Data generator sub2__sub1__S1_1 is invalid. - Variable sub2__sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__sub1__S1'] does not match any elements of model model_1 . - Data generator sub3__S1_1 is invalid. - Variable sub3__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__S1'] does not match any elements of model model_1 . - Data generator sub3__sub1__S1_1 is invalid. - Variable sub3__sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__sub1__S1'] does not match any elements of model model_1 . - Data generator sub3__sub2__S1_1 is invalid. - Variable sub3__sub2__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__sub2__S1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01133-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01133-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5b8d3e750b90a4265fe4/download)
    [Logs](https://api.biosimulations.org/logs/677d5b8d3e750b90a4265fe4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b8d3e750b90a4265fe4)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp619810 is invalid. - Data generator sub1__S1_1 is invalid. - Variable sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__S1'] does not match any elements of model model_1 . - Data generator sub2__S1_1 is invalid. - Variable sub2__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__S1'] does not match any elements of model model_1 . - Data generator sub3__S1_1 is invalid. - Variable sub3__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__S1'] does not match any elements of model model_1 . - Data generator sub3__sub1__S1_1 is invalid. - Variable sub3__sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__sub1__S1'] does not match any elements of model model_1 . - Data generator sub3__sub2__S1_1 is invalid. - Variable sub3__sub2__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__sub2__S1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5b8bf8016f90e7cbc32a/download)
    [Logs](https://api.biosimulations.org/logs/677d5b8bf8016f90e7cbc32a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b8bf8016f90e7cbc32a)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp371709 is invalid. - Data generator sub1__S1_1 is invalid. - Variable sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__S1'] does not match any elements of model model_1 . - Data generator sub2__S1_1 is invalid. - Variable sub2__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__S1'] does not match any elements of model model_1 . - Data generator sub3__S1_1 is invalid. - Variable sub3__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__S1'] does not match any elements of model model_1 . - Data generator sub3__sub1__S1_1 is invalid. - Variable sub3__sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__sub1__S1'] does not match any elements of model model_1 . - Data generator sub3__sub2__S1_1 is invalid. - Variable sub3__sub2__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__sub2__S1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01134-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01134-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5b92f8016f90e7cbc34d/download)
    [Logs](https://api.biosimulations.org/logs/677d5b92f8016f90e7cbc34d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b92f8016f90e7cbc34d)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp890732 is invalid. - Data generator sub1__S1_1 is invalid. - Variable sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__S1'] does not match any elements of model model_1 . - Data generator sub2__S1_1 is invalid. - Variable sub2__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__S1'] does not match any elements of model model_1 . - Data generator sub3__S1_1 is invalid. - Variable sub3__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__S1'] does not match any elements of model model_1 . - Data generator sub3__sub1__S1_1 is invalid. - Variable sub3__sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__sub1__S1'] does not match any elements of model model_1 . - Data generator sub3__sub2__S1_1 is invalid. - Variable sub3__sub2__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__sub2__S1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5b90f8016f90e7cbc345/download)
    [Logs](https://api.biosimulations.org/logs/677d5b90f8016f90e7cbc345?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b90f8016f90e7cbc345)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp101152 is invalid. - Data generator sub1__S1_1 is invalid. - Variable sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__S1'] does not match any elements of model model_1 . - Data generator sub2__S1_1 is invalid. - Variable sub2__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__S1'] does not match any elements of model model_1 . - Data generator sub3__S1_1 is invalid. - Variable sub3__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__S1'] does not match any elements of model model_1 . - Data generator sub3__sub1__S1_1 is invalid. - Variable sub3__sub1__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__sub1__S1'] does not match any elements of model model_1 . - Data generator sub3__sub2__S1_1 is invalid. - Variable sub3__sub2__S1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub3__sub2__S1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01135-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01135-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b973e750b90a4266015/download)
    [Logs](https://api.biosimulations.org/logs/677d5b973e750b90a4266015?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b973e750b90a4266015)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b953e750b90a426600c/download)
    [Logs](https://api.biosimulations.org/logs/677d5b953e750b90a426600c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b953e750b90a426600c)

    HTTP response: 201| +|[01136-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01136-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5b9c67468f9f3fc5dcc3/download)
    [Logs](https://api.biosimulations.org/logs/677d5b9c67468f9f3fc5dcc3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b9c67468f9f3fc5dcc3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b9af8016f90e7cbc36a/download)
    [Logs](https://api.biosimulations.org/logs/677d5b9af8016f90e7cbc36a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b9af8016f90e7cbc36a)

    HTTP response: 201| +|[01137-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01137-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ba1f8016f90e7cbc393/download)
    [Logs](https://api.biosimulations.org/logs/677d5ba1f8016f90e7cbc393?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ba1f8016f90e7cbc393)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5b9f67468f9f3fc5dcd1/download)
    [Logs](https://api.biosimulations.org/logs/677d5b9f67468f9f3fc5dcd1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5b9f67468f9f3fc5dcd1)

    HTTP response: 201| +|[01138-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01138-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5ba767468f9f3fc5dd00/download)
    [Logs](https://api.biosimulations.org/logs/677d5ba767468f9f3fc5dd00?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ba767468f9f3fc5dd00)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp665284 is invalid. - Data generator sub1__prel_1 is invalid. - Variable sub1__prel is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__prel'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5ba5f8016f90e7cbc39f/download)
    [Logs](https://api.biosimulations.org/logs/677d5ba5f8016f90e7cbc39f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ba5f8016f90e7cbc39f)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp747511 is invalid. - Data generator sub1__prel_1 is invalid. - Variable sub1__prel is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__prel'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01139-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01139-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5bac3e750b90a426606b/download)
    [Logs](https://api.biosimulations.org/logs/677d5bac3e750b90a426606b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bac3e750b90a426606b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5baaf8016f90e7cbc3b6/download)
    [Logs](https://api.biosimulations.org/logs/677d5baaf8016f90e7cbc3b6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5baaf8016f90e7cbc3b6)

    HTTP response: 201| +|[01140-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01140-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5bb23e750b90a4266090/download)
    [Logs](https://api.biosimulations.org/logs/677d5bb23e750b90a4266090?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bb23e750b90a4266090)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5baf3e750b90a4266087/download)
    [Logs](https://api.biosimulations.org/logs/677d5baf3e750b90a4266087?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5baf3e750b90a4266087)

    HTTP response: 201| +|[01141-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01141-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5bb63e750b90a4266098/download)
    [Logs](https://api.biosimulations.org/logs/677d5bb63e750b90a4266098?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bb63e750b90a4266098)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5bb467468f9f3fc5dd37/download)
    [Logs](https://api.biosimulations.org/logs/677d5bb467468f9f3fc5dd37?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bb467468f9f3fc5dd37)

    HTTP response: 201| +|[01142-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01142-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = t4 - delay(t3, timeconv * (time / timeconv / 2))' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d5bbdf8016f90e7cbc3f1/download)
    [Logs](https://api.biosimulations.org/logs/677d5bbdf8016f90e7cbc3f1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bbdf8016f90e7cbc3f1)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(t1, timeconv * 3)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5bb967468f9f3fc5dd4a/download)
    [Logs](https://api.biosimulations.org/logs/677d5bb967468f9f3fc5dd4a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bb967468f9f3fc5dd4a)

    HTTP response: 201| +|[01143-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01143-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5bc3f8016f90e7cbc405/download)
    [Logs](https://api.biosimulations.org/logs/677d5bc3f8016f90e7cbc405?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bc3f8016f90e7cbc405)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp422325 is invalid. - Data generator sub1__s1_1 is invalid. - Variable sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__s1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5bc067468f9f3fc5dd62/download)
    [Logs](https://api.biosimulations.org/logs/677d5bc067468f9f3fc5dd62?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bc067468f9f3fc5dd62)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp670822 is invalid. - Data generator sub1__s1_1 is invalid. - Variable sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__s1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01144-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01144-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5bc8f8016f90e7cbc418/download)
    [Logs](https://api.biosimulations.org/logs/677d5bc8f8016f90e7cbc418?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bc8f8016f90e7cbc418)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp552064 is invalid. - Data generator sub1__s1_1 is invalid. - Variable sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__s1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5bc53e750b90a42660ee/download)
    [Logs](https://api.biosimulations.org/logs/677d5bc53e750b90a42660ee?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bc53e750b90a42660ee)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp47549 is invalid. - Data generator sub1__s1_1 is invalid. - Variable sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__s1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01145-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01145-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5bce3e750b90a4266110/download)
    [Logs](https://api.biosimulations.org/logs/677d5bce3e750b90a4266110?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bce3e750b90a4266110)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp709797 is invalid. - Data generator sub1__sub1__s1_1 is invalid. - Variable sub1__sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__sub1__s1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5bcb67468f9f3fc5dd8a/download)
    [Logs](https://api.biosimulations.org/logs/677d5bcb67468f9f3fc5dd8a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bcb67468f9f3fc5dd8a)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp7080 is invalid. - Data generator sub1__sub1__s1_1 is invalid. - Variable sub1__sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__sub1__s1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01146-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01146-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5bd2f8016f90e7cbc434/download)
    [Logs](https://api.biosimulations.org/logs/677d5bd2f8016f90e7cbc434?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bd2f8016f90e7cbc434)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp356014 is invalid. - Data generator sub1__sub1__t1_1 is invalid. - Variable sub1__sub1__t1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__sub1__t1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5bd067468f9f3fc5dda7/download)
    [Logs](https://api.biosimulations.org/logs/677d5bd067468f9f3fc5dda7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bd067468f9f3fc5dda7)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp388701 is invalid. - Data generator sub1__sub1__t1_1 is invalid. - Variable sub1__sub1__t1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__sub1__t1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01147-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01147-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5bd73e750b90a4266129/download)
    [Logs](https://api.biosimulations.org/logs/677d5bd73e750b90a4266129?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bd73e750b90a4266129)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp890221 is invalid. - Data generator sub1__sub1__t1_1 is invalid. - Variable sub1__sub1__t1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__sub1__t1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5bd5f8016f90e7cbc43e/download)
    [Logs](https://api.biosimulations.org/logs/677d5bd5f8016f90e7cbc43e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bd5f8016f90e7cbc43e)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp331588 is invalid. - Data generator sub1__sub1__t1_1 is invalid. - Variable sub1__sub1__t1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__sub1__t1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01148-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01148-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5bdcf8016f90e7cbc455/download)
    [Logs](https://api.biosimulations.org/logs/677d5bdcf8016f90e7cbc455?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bdcf8016f90e7cbc455)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp773538 is invalid. - Data generator sub1__sub1__sub1__s1_1 is invalid. - Variable sub1__sub1__sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__sub1__sub1__s1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5bda67468f9f3fc5dde0/download)
    [Logs](https://api.biosimulations.org/logs/677d5bda67468f9f3fc5dde0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bda67468f9f3fc5dde0)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp519709 is invalid. - Data generator sub1__sub1__sub1__s1_1 is invalid. - Variable sub1__sub1__sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__sub1__sub1__s1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01149-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01149-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5be167468f9f3fc5ddf6/download)
    [Logs](https://api.biosimulations.org/logs/677d5be167468f9f3fc5ddf6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5be167468f9f3fc5ddf6)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5bdef8016f90e7cbc464/download)
    [Logs](https://api.biosimulations.org/logs/677d5bdef8016f90e7cbc464?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bdef8016f90e7cbc464)

    HTTP response: 201| +|[01150-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01150-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5be6f8016f90e7cbc489/download)
    [Logs](https://api.biosimulations.org/logs/677d5be6f8016f90e7cbc489?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5be6f8016f90e7cbc489)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5be43e750b90a4266167/download)
    [Logs](https://api.biosimulations.org/logs/677d5be43e750b90a4266167?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5be43e750b90a4266167)

    HTTP response: 201| +|[01151-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01151-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5bec67468f9f3fc5de27/download)
    [Logs](https://api.biosimulations.org/logs/677d5bec67468f9f3fc5de27?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bec67468f9f3fc5de27)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5be967468f9f3fc5de20/download)
    [Logs](https://api.biosimulations.org/logs/677d5be967468f9f3fc5de20?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5be967468f9f3fc5de20)

    HTTP response: 201| +|[01152-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01152-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5bf2f8016f90e7cbc4be/download)
    [Logs](https://api.biosimulations.org/logs/677d5bf2f8016f90e7cbc4be?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bf2f8016f90e7cbc4be)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5bf067468f9f3fc5de33/download)
    [Logs](https://api.biosimulations.org/logs/677d5bf067468f9f3fc5de33?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bf067468f9f3fc5de33)

    HTTP response: 201| +|[01153-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01153-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5bf83e750b90a42661b7/download)
    [Logs](https://api.biosimulations.org/logs/677d5bf83e750b90a42661b7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bf83e750b90a42661b7)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp638098 is invalid. - Data generator A__A__Q_1 is invalid. - Variable A__A__Q is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__A__Q'] does not match any elements of model model_1 . - Data generator A__A__y_1 is invalid. - Variable A__A__y is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__A__y'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5bf53e750b90a42661b0/download)
    [Logs](https://api.biosimulations.org/logs/677d5bf53e750b90a42661b0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bf53e750b90a42661b0)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp811915 is invalid. - Data generator A__A__Q_1 is invalid. - Variable A__A__Q is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__A__Q'] does not match any elements of model model_1 . - Data generator A__A__y_1 is invalid. - Variable A__A__y is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__A__y'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01154-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01154-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5bfdf8016f90e7cbc4e5/download)
    [Logs](https://api.biosimulations.org/logs/677d5bfdf8016f90e7cbc4e5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bfdf8016f90e7cbc4e5)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp620327 is invalid. - Data generator sub1__t1_1 is invalid. - Variable sub1__t1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t1'] does not match any elements of model model_1 . - Data generator sub1__t2_1 is invalid. - Variable sub1__t2 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t2'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5bfb3e750b90a42661c7/download)
    [Logs](https://api.biosimulations.org/logs/677d5bfb3e750b90a42661c7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bfb3e750b90a42661c7)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp617234 is invalid. - Data generator sub1__t1_1 is invalid. - Variable sub1__t1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t1'] does not match any elements of model model_1 . - Data generator sub1__t2_1 is invalid. - Variable sub1__t2 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t2'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01155-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01155-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5c02f8016f90e7cbc4f7/download)
    [Logs](https://api.biosimulations.org/logs/677d5c02f8016f90e7cbc4f7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c02f8016f90e7cbc4f7)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp301022 is invalid. - Data generator sub1__t1_1 is invalid. - Variable sub1__t1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t1'] does not match any elements of model model_1 . - Data generator sub1__t2_1 is invalid. - Variable sub1__t2 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t2'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5bff3e750b90a42661cf/download)
    [Logs](https://api.biosimulations.org/logs/677d5bff3e750b90a42661cf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5bff3e750b90a42661cf)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp934645 is invalid. - Data generator sub1__t1_1 is invalid. - Variable sub1__t1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t1'] does not match any elements of model model_1 . - Data generator sub1__t2_1 is invalid. - Variable sub1__t2 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t2'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01156-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01156-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5c073e750b90a42661ed/download)
    [Logs](https://api.biosimulations.org/logs/677d5c073e750b90a42661ed?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c073e750b90a42661ed)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp102423 is invalid. - Data generator sub1__t1_1 is invalid. - Variable sub1__t1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t1'] does not match any elements of model model_1 . - Data generator sub1__t2_1 is invalid. - Variable sub1__t2 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t2'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5c053e750b90a42661e1/download)
    [Logs](https://api.biosimulations.org/logs/677d5c053e750b90a42661e1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c053e750b90a42661e1)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp464439 is invalid. - Data generator sub1__t1_1 is invalid. - Variable sub1__t1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t1'] does not match any elements of model model_1 . - Data generator sub1__t2_1 is invalid. - Variable sub1__t2 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t2'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01157-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01157-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5c0c67468f9f3fc5de99/download)
    [Logs](https://api.biosimulations.org/logs/677d5c0c67468f9f3fc5de99?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c0c67468f9f3fc5de99)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp926003 is invalid. - Data generator sub1__t1_1 is invalid. - Variable sub1__t1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t1'] does not match any elements of model model_1 . - Data generator sub1__t2_1 is invalid. - Variable sub1__t2 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t2'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5c0af8016f90e7cbc50e/download)
    [Logs](https://api.biosimulations.org/logs/677d5c0af8016f90e7cbc50e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c0af8016f90e7cbc50e)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp96540 is invalid. - Data generator sub1__t1_1 is invalid. - Variable sub1__t1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t1'] does not match any elements of model model_1 . - Data generator sub1__t2_1 is invalid. - Variable sub1__t2 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t2'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01158-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01158-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5c1367468f9f3fc5debc/download)
    [Logs](https://api.biosimulations.org/logs/677d5c1367468f9f3fc5debc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c1367468f9f3fc5debc)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp488679 is invalid. - Data generator sub1__t1_1 is invalid. - Variable sub1__t1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t1'] does not match any elements of model model_1 . - Data generator sub1__t2_1 is invalid. - Variable sub1__t2 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t2'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5c10f8016f90e7cbc523/download)
    [Logs](https://api.biosimulations.org/logs/677d5c10f8016f90e7cbc523?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c10f8016f90e7cbc523)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp459677 is invalid. - Data generator sub1__t1_1 is invalid. - Variable sub1__t1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t1'] does not match any elements of model model_1 . - Data generator sub1__t2_1 is invalid. - Variable sub1__t2 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__t2'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01159-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01159-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5c193e750b90a4266234/download)
    [Logs](https://api.biosimulations.org/logs/677d5c193e750b90a4266234?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c193e750b90a4266234)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp662969 is invalid. - Data generator sub1__s1_1 is invalid. - Variable sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__s1'] does not match any elements of model model_1 . - Data generator sub1__p1_1 is invalid. - Variable sub1__p1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__p1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5c16f8016f90e7cbc547/download)
    [Logs](https://api.biosimulations.org/logs/677d5c16f8016f90e7cbc547?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c16f8016f90e7cbc547)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp766655 is invalid. - Data generator sub1__s1_1 is invalid. - Variable sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__s1'] does not match any elements of model model_1 . - Data generator sub1__p1_1 is invalid. - Variable sub1__p1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__p1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01160-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01160-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5c1e3e750b90a4266243/download)
    [Logs](https://api.biosimulations.org/logs/677d5c1e3e750b90a4266243?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c1e3e750b90a4266243)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp174167 is invalid. - Data generator sub1__s1_1 is invalid. - Variable sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__s1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5c1c3e750b90a4266240/download)
    [Logs](https://api.biosimulations.org/logs/677d5c1c3e750b90a4266240?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c1c3e750b90a4266240)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp65294 is invalid. - Data generator sub1__s1_1 is invalid. - Variable sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__s1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01161-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01161-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5c243e750b90a4266255/download)
    [Logs](https://api.biosimulations.org/logs/677d5c243e750b90a4266255?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c243e750b90a4266255)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp527228 is invalid. - Data generator sub1__s1_1 is invalid. - Variable sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__s1'] does not match any elements of model model_1 . - Data generator sub1__p1_1 is invalid. - Variable sub1__p1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__p1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5c21f8016f90e7cbc56a/download)
    [Logs](https://api.biosimulations.org/logs/677d5c21f8016f90e7cbc56a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c21f8016f90e7cbc56a)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp879694 is invalid. - Data generator sub1__s1_1 is invalid. - Variable sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__s1'] does not match any elements of model model_1 . - Data generator sub1__p1_1 is invalid. - Variable sub1__p1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__p1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01162-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01162-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5c283e750b90a426627c/download)
    [Logs](https://api.biosimulations.org/logs/677d5c283e750b90a426627c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c283e750b90a426627c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5c2667468f9f3fc5df08/download)
    [Logs](https://api.biosimulations.org/logs/677d5c2667468f9f3fc5df08?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c2667468f9f3fc5df08)

    HTTP response: 201| +|[01163-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01163-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5c2f67468f9f3fc5df27/download)
    [Logs](https://api.biosimulations.org/logs/677d5c2f67468f9f3fc5df27?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c2f67468f9f3fc5df27)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5c2b67468f9f3fc5df1c/download)
    [Logs](https://api.biosimulations.org/logs/677d5c2b67468f9f3fc5df1c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c2b67468f9f3fc5df1c)

    HTTP response: 201| +|[01164-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01164-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5c36f8016f90e7cbc5c8/download)
    [Logs](https://api.biosimulations.org/logs/677d5c36f8016f90e7cbc5c8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c36f8016f90e7cbc5c8)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp707125 is invalid. - Data generator submod1__S_1 is invalid. - Variable submod1__S_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='submod1__S'] does not match any elements of model model_1 . - Variable submod1__S_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='submod1__comp'] does not match any elements of model model_1 . - Data generator submod1__E_1 is invalid. - Variable submod1__E_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='submod1__E'] does not match any elements of model model_1 . - Variable submod1__E_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='submod1__comp'] does not match any elements of model model_1 . - Data generator submod1__D_1 is invalid. - Variable submod1__D_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='submod1__D'] does not match any elements of model model_1 . - Variable submod1__D_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='submod1__comp'] does not match any elements of model model_1 . - Data generator submod1__ES_1 is invalid. - Variable submod1__ES_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='submod1__ES'] does not match any elements of model model_1 . - Variable submod1__ES_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='submod1__comp'] does not match any elements of model model_1 . - Data generator submod2__S_1 is invalid. - Variable submod2__S_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='submod2__S'] does not match any elements of model model_1 . - Variable submod2__S_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='submod2__comp'] does not match any elements of model model_1 . - Data generator submod2__E_1 is invalid. - Variable submod2__E_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='submod2__E'] does not match any elements of model model_1 . - Variable submod2__E_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='submod2__comp'] does not match any elements of model model_1 . - Data generator submod2__D_1 is invalid. - Variable submod2__D_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='submod2__D'] does not match any elements of model model_1 . - Variable submod2__D_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='submod2__comp'] does not match any elements of model model_1 . - Data generator submod2__ES_1 is invalid. - Variable submod2__ES_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='submod2__ES'] does not match any elements of model model_1 . - Variable submod2__ES_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='submod2__comp'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5c33f8016f90e7cbc5bc/download)
    [Logs](https://api.biosimulations.org/logs/677d5c33f8016f90e7cbc5bc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c33f8016f90e7cbc5bc)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp990918 is invalid. - Data generator submod1__S_1 is invalid. - Variable submod1__S_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='submod1__S'] does not match any elements of model model_1 . - Variable submod1__S_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='submod1__comp'] does not match any elements of model model_1 . - Data generator submod1__E_1 is invalid. - Variable submod1__E_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='submod1__E'] does not match any elements of model model_1 . - Variable submod1__E_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='submod1__comp'] does not match any elements of model model_1 . - Data generator submod1__D_1 is invalid. - Variable submod1__D_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='submod1__D'] does not match any elements of model model_1 . - Variable submod1__D_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='submod1__comp'] does not match any elements of model model_1 . - Data generator submod1__ES_1 is invalid. - Variable submod1__ES_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='submod1__ES'] does not match any elements of model model_1 . - Variable submod1__ES_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='submod1__comp'] does not match any elements of model model_1 . - Data generator submod2__S_1 is invalid. - Variable submod2__S_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='submod2__S'] does not match any elements of model model_1 . - Variable submod2__S_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='submod2__comp'] does not match any elements of model model_1 . - Data generator submod2__E_1 is invalid. - Variable submod2__E_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='submod2__E'] does not match any elements of model model_1 . - Variable submod2__E_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='submod2__comp'] does not match any elements of model model_1 . - Data generator submod2__D_1 is invalid. - Variable submod2__D_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='submod2__D'] does not match any elements of model model_1 . - Variable submod2__D_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='submod2__comp'] does not match any elements of model model_1 . - Data generator submod2__ES_1 is invalid. - Variable submod2__ES_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='submod2__ES'] does not match any elements of model model_1 . - Variable submod2__ES_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='submod2__comp'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01165-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01165-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5c3cf8016f90e7cbc5e2/download)
    [Logs](https://api.biosimulations.org/logs/677d5c3cf8016f90e7cbc5e2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c3cf8016f90e7cbc5e2)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp653652 is invalid. - Model model_1 is invalid. - The model file 01165-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. The with the id 'ExtMod1' refers to a source 'enzyme_model-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. - Data generator A__E_1 is invalid. - Variable A__E_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__E'] does not match any elements of model model_1 . - Data generator A__ES_1 is invalid. - Variable A__ES_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__ES'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5c393e750b90a42662a6/download)
    [Logs](https://api.biosimulations.org/logs/677d5c393e750b90a42662a6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c393e750b90a42662a6)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp396843 is invalid. - Model model_1 is invalid. - The model file 01165-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. The with the id 'ExtMod1' refers to a source 'enzyme_model-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. - Data generator A__E_1 is invalid. - Variable A__E_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__E'] does not match any elements of model model_1 . - Data generator A__ES_1 is invalid. - Variable A__ES_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__ES'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01166-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01166-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5c42f8016f90e7cbc5f7/download)
    [Logs](https://api.biosimulations.org/logs/677d5c42f8016f90e7cbc5f7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c42f8016f90e7cbc5f7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5c3f3e750b90a42662c9/download)
    [Logs](https://api.biosimulations.org/logs/677d5c3f3e750b90a42662c9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c3f3e750b90a42662c9)

    HTTP response: 201| +|[01167-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01167-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5c47f8016f90e7cbc606/download)
    [Logs](https://api.biosimulations.org/logs/677d5c47f8016f90e7cbc606?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c47f8016f90e7cbc606)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp680418 is invalid. - Model model_1 is invalid. - The model file 01167-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 9, column 4: The external model referenced in this model could not be resolved. The with the id 'EM1' refers to a source 'enzyme_identical-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. - Data generator A__S_1 is invalid. - Variable A__S_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__S'] does not match any elements of model model_1 . - Variable A__S_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 . - Data generator A__E_1 is invalid. - Variable A__E_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__E'] does not match any elements of model model_1 . - Variable A__E_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 . - Data generator A__D_1 is invalid. - Variable A__D_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__D'] does not match any elements of model model_1 . - Variable A__D_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 . - Data generator A__ES_1 is invalid. - Variable A__ES_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__ES'] does not match any elements of model model_1 . - Variable A__ES_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5c45f8016f90e7cbc5fc/download)
    [Logs](https://api.biosimulations.org/logs/677d5c45f8016f90e7cbc5fc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c45f8016f90e7cbc5fc)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp334478 is invalid. - Model model_1 is invalid. - The model file 01167-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 9, column 4: The external model referenced in this model could not be resolved. The with the id 'EM1' refers to a source 'enzyme_identical-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. - Data generator A__S_1 is invalid. - Variable A__S_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__S'] does not match any elements of model model_1 . - Variable A__S_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 . - Data generator A__E_1 is invalid. - Variable A__E_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__E'] does not match any elements of model model_1 . - Variable A__E_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 . - Data generator A__D_1 is invalid. - Variable A__D_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__D'] does not match any elements of model model_1 . - Variable A__D_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 . - Data generator A__ES_1 is invalid. - Variable A__ES_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__ES'] does not match any elements of model model_1 . - Variable A__ES_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01168-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01168-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5c4df8016f90e7cbc61b/download)
    [Logs](https://api.biosimulations.org/logs/677d5c4df8016f90e7cbc61b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c4df8016f90e7cbc61b)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp79494 is invalid. - Model model_1 is invalid. - The model file 01168-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 9, column 4: The external model referenced in this model could not be resolved. The with the id 'EM1' refers to a source 'enzyme_identical-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. - Data generator A__S_1 is invalid. - Variable A__S_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__S'] does not match any elements of model model_1 . - Variable A__S_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 . - Data generator A__A__E_1 is invalid. - Variable A__A__E_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__A__E'] does not match any elements of model model_1 . - Variable A__A__E_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 . - Data generator A__A__D_1 is invalid. - Variable A__A__D_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__A__D'] does not match any elements of model model_1 . - Variable A__A__D_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 . - Data generator A__A__ES_1 is invalid. - Variable A__A__ES_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__A__ES'] does not match any elements of model model_1 . - Variable A__A__ES_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 . - Data generator A__B__E_1 is invalid. - Variable A__B__E_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__B__E'] does not match any elements of model model_1 . - Variable A__B__E_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 . - Data generator A__B__D_1 is invalid. - Variable A__B__D_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__B__D'] does not match any elements of model model_1 . - Variable A__B__D_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 . - Data generator A__B__ES_1 is invalid. - Variable A__B__ES_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__B__ES'] does not match any elements of model model_1 . - Variable A__B__ES_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5c4bf8016f90e7cbc609/download)
    [Logs](https://api.biosimulations.org/logs/677d5c4bf8016f90e7cbc609?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c4bf8016f90e7cbc609)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp341713 is invalid. - Model model_1 is invalid. - The model file 01168-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 9, column 4: The external model referenced in this model could not be resolved. The with the id 'EM1' refers to a source 'enzyme_identical-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. - Data generator A__S_1 is invalid. - Variable A__S_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__S'] does not match any elements of model model_1 . - Variable A__S_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 . - Data generator A__A__E_1 is invalid. - Variable A__A__E_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__A__E'] does not match any elements of model model_1 . - Variable A__A__E_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 . - Data generator A__A__D_1 is invalid. - Variable A__A__D_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__A__D'] does not match any elements of model model_1 . - Variable A__A__D_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 . - Data generator A__A__ES_1 is invalid. - Variable A__A__ES_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__A__ES'] does not match any elements of model model_1 . - Variable A__A__ES_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 . - Data generator A__B__E_1 is invalid. - Variable A__B__E_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__B__E'] does not match any elements of model model_1 . - Variable A__B__E_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 . - Data generator A__B__D_1 is invalid. - Variable A__B__D_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__B__D'] does not match any elements of model model_1 . - Variable A__B__D_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 . - Data generator A__B__ES_1 is invalid. - Variable A__B__ES_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__B__ES'] does not match any elements of model model_1 . - Variable A__B__ES_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__comp'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01169-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01169-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5c53f8016f90e7cbc62c/download)
    [Logs](https://api.biosimulations.org/logs/677d5c53f8016f90e7cbc62c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c53f8016f90e7cbc62c)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp194079 is invalid. - Data generator A__S1_1 is invalid. - Variable A__S1_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__S1'] does not match any elements of model model_1 . - Variable A__S1_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__default_compartment'] does not match any elements of model model_1 . - Data generator A__y_1 is invalid. - Variable A__y is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__y'] does not match any elements of model model_1 . - Data generator A__k1_1 is invalid. - Variable A__k1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__k1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5c5067468f9f3fc5df98/download)
    [Logs](https://api.biosimulations.org/logs/677d5c5067468f9f3fc5df98?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c5067468f9f3fc5df98)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp395670 is invalid. - Data generator A__S1_1 is invalid. - Variable A__S1_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__S1'] does not match any elements of model model_1 . - Variable A__S1_1_c is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='A__default_compartment'] does not match any elements of model model_1 . - Data generator A__y_1 is invalid. - Variable A__y is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__y'] does not match any elements of model model_1 . - Data generator A__k1_1 is invalid. - Variable A__k1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__k1'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01170-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01170-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5c583e750b90a4266320/download)
    [Logs](https://api.biosimulations.org/logs/677d5c583e750b90a4266320?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c583e750b90a4266320)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5c553e750b90a426630f/download)
    [Logs](https://api.biosimulations.org/logs/677d5c553e750b90a426630f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c553e750b90a426630f)

    HTTP response: 201| +|[01171-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01171-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5c5df8016f90e7cbc649/download)
    [Logs](https://api.biosimulations.org/logs/677d5c5df8016f90e7cbc649?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c5df8016f90e7cbc649)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5c5a67468f9f3fc5dfcc/download)
    [Logs](https://api.biosimulations.org/logs/677d5c5a67468f9f3fc5dfcc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c5a67468f9f3fc5dfcc)

    HTTP response: 201| +|[01172-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01172-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5c623e750b90a4266343/download)
    [Logs](https://api.biosimulations.org/logs/677d5c623e750b90a4266343?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c623e750b90a4266343)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5c60f8016f90e7cbc662/download)
    [Logs](https://api.biosimulations.org/logs/677d5c60f8016f90e7cbc662?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c60f8016f90e7cbc662)

    HTTP response: 201| +|[01173-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01173-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(t1, timeconv * 3)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d5c673e750b90a4266354/download)
    [Logs](https://api.biosimulations.org/logs/677d5c673e750b90a4266354?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c673e750b90a4266354)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(t1, timeconv * 3)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5c65f8016f90e7cbc678/download)
    [Logs](https://api.biosimulations.org/logs/677d5c65f8016f90e7cbc678?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c65f8016f90e7cbc678)

    HTTP response: 201| +|[01174-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01174-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = t4 - delay(t3, timeconv * (time / timeconv / 2))' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d5c6d67468f9f3fc5dffc/download)
    [Logs](https://api.biosimulations.org/logs/677d5c6d67468f9f3fc5dffc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c6d67468f9f3fc5dffc)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5c6a3e750b90a4266366/download)
    [Logs](https://api.biosimulations.org/logs/677d5c6a3e750b90a4266366?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c6a3e750b90a4266366)

    HTTP response: 201| +|[01175-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01175-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5c733e750b90a4266382/download)
    [Logs](https://api.biosimulations.org/logs/677d5c733e750b90a4266382?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c733e750b90a4266382)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5c70f8016f90e7cbc6a1/download)
    [Logs](https://api.biosimulations.org/logs/677d5c70f8016f90e7cbc6a1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c70f8016f90e7cbc6a1)

    HTTP response: 201| +|[01176-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01176-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(t5, timeconv * 0.2)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d5c7af8016f90e7cbc6d4/download)
    [Logs](https://api.biosimulations.org/logs/677d5c7af8016f90e7cbc6d4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c7af8016f90e7cbc6d4)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(t5, timeconv * 0.2)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5c7767468f9f3fc5e01c/download)
    [Logs](https://api.biosimulations.org/logs/677d5c7767468f9f3fc5e01c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c7767468f9f3fc5e01c)

    HTTP response: 201| +|[01177-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01177-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5c8067468f9f3fc5e044/download)
    [Logs](https://api.biosimulations.org/logs/677d5c8067468f9f3fc5e044?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c8067468f9f3fc5e044)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5c7d3e750b90a42663b7/download)
    [Logs](https://api.biosimulations.org/logs/677d5c7d3e750b90a42663b7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c7d3e750b90a42663b7)

    HTTP response: 201| +|[01178-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01178-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5c86f8016f90e7cbc6f4/download)
    [Logs](https://api.biosimulations.org/logs/677d5c86f8016f90e7cbc6f4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c86f8016f90e7cbc6f4)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp322164 is invalid. - Data generator sub1__s1_1 is invalid. - Variable sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__s1'] does not match any elements of model model_1 . - Data generator sub1__p80_1 is invalid. - Variable sub1__p80 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__p80'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5c83f8016f90e7cbc6ee/download)
    [Logs](https://api.biosimulations.org/logs/677d5c83f8016f90e7cbc6ee?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c83f8016f90e7cbc6ee)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp173233 is invalid. - Data generator sub1__s1_1 is invalid. - Variable sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__s1'] does not match any elements of model model_1 . - Data generator sub1__p80_1 is invalid. - Variable sub1__p80 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__p80'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01179-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01179-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5c8b3e750b90a42663d6/download)
    [Logs](https://api.biosimulations.org/logs/677d5c8b3e750b90a42663d6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c8b3e750b90a42663d6)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5c89f8016f90e7cbc708/download)
    [Logs](https://api.biosimulations.org/logs/677d5c89f8016f90e7cbc708?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c89f8016f90e7cbc708)

    HTTP response: 201| +|[01180-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01180-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5c9167468f9f3fc5e080/download)
    [Logs](https://api.biosimulations.org/logs/677d5c9167468f9f3fc5e080?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c9167468f9f3fc5e080)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp441719 is invalid. - Data generator sub1__s1_1 is invalid. - Variable sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__s1'] does not match any elements of model model_1 . - Data generator sub1__p80_1 is invalid. - Variable sub1__p80 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__p80'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5c8ef8016f90e7cbc710/download)
    [Logs](https://api.biosimulations.org/logs/677d5c8ef8016f90e7cbc710?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c8ef8016f90e7cbc710)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp411470 is invalid. - Data generator sub1__s1_1 is invalid. - Variable sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__s1'] does not match any elements of model model_1 . - Data generator sub1__p80_1 is invalid. - Variable sub1__p80 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__p80'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01181-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01181-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5c9667468f9f3fc5e0a4/download)
    [Logs](https://api.biosimulations.org/logs/677d5c9667468f9f3fc5e0a4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c9667468f9f3fc5e0a4)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp23515 is invalid. - Data generator sub1__s1_1 is invalid. - Variable sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__s1'] does not match any elements of model model_1 . - Data generator sub1__p80_1 is invalid. - Variable sub1__p80 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__p80'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5c93f8016f90e7cbc72b/download)
    [Logs](https://api.biosimulations.org/logs/677d5c93f8016f90e7cbc72b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c93f8016f90e7cbc72b)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp945394 is invalid. - Data generator sub1__s1_1 is invalid. - Variable sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub1__s1'] does not match any elements of model model_1 . - Data generator sub1__p80_1 is invalid. - Variable sub1__p80 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__p80'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01182-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01182-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5c9b67468f9f3fc5e0b1/download)
    [Logs](https://api.biosimulations.org/logs/677d5c9b67468f9f3fc5e0b1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c9b67468f9f3fc5e0b1)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp923356 is invalid. - Data generator sub1__p80_1 is invalid. - Variable sub1__p80 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__p80'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5c99f8016f90e7cbc73e/download)
    [Logs](https://api.biosimulations.org/logs/677d5c99f8016f90e7cbc73e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c99f8016f90e7cbc73e)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp52766 is invalid. - Data generator sub1__p80_1 is invalid. - Variable sub1__p80 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__p80'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01183-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01183-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5ca067468f9f3fc5e0c0/download)
    [Logs](https://api.biosimulations.org/logs/677d5ca067468f9f3fc5e0c0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ca067468f9f3fc5e0c0)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp249134 is invalid. - Data generator sub1__p80_1 is invalid. - Variable sub1__p80 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__p80'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5c9e3e750b90a426642d/download)
    [Logs](https://api.biosimulations.org/logs/677d5c9e3e750b90a426642d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5c9e3e750b90a426642d)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp844975 is invalid. - Data generator sub1__p80_1 is invalid. - Variable sub1__p80 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='sub1__p80'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01184-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01184-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ca567468f9f3fc5e0ec/download)
    [Logs](https://api.biosimulations.org/logs/677d5ca567468f9f3fc5e0ec?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ca567468f9f3fc5e0ec)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ca367468f9f3fc5e0ca/download)
    [Logs](https://api.biosimulations.org/logs/677d5ca367468f9f3fc5e0ca?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ca367468f9f3fc5e0ca)

    HTTP response: 201| +|[01185-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01185-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5caa67468f9f3fc5e0f8/download)
    [Logs](https://api.biosimulations.org/logs/677d5caa67468f9f3fc5e0f8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5caa67468f9f3fc5e0f8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ca83e750b90a4266453/download)
    [Logs](https://api.biosimulations.org/logs/677d5ca83e750b90a4266453?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ca83e750b90a4266453)

    HTTP response: 201| +|[01186-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01186-sbml-l3v2.xml)|pass|pass|pass|
    other Cannot perform moiety conversion with non-constant stoichiometry. The species reference which refers to species M does not have the constant attribute set. To disable conserved moiety conversion, either a: set [Your roadrunner variable].conservedMoietyAnalysis = False, before calling the load('myfile.xml') method, or b: create a LoadSBMLOptions object, set the conservedMoieties property to False and use this as the second argument to the RoadRunner constructor or load() method, i.e. o = roadrunner.LoadSBMLOptions() o.conservedMoieties = False r = roadrunner.RoadRunner('myfile.xml', o)
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d5cb03e750b90a4266485/download)
    [Logs](https://api.biosimulations.org/logs/677d5cb03e750b90a4266485?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cb03e750b90a4266485)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5cadf8016f90e7cbc798/download)
    [Logs](https://api.biosimulations.org/logs/677d5cadf8016f90e7cbc798?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cadf8016f90e7cbc798)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01187-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01187-sbml-l3v2.xml)|pass|pass|pass|
    other Cannot perform moiety conversion with non-constant stoichiometry. The species reference which refers to species M does not have the constant attribute set. To disable conserved moiety conversion, either a: set [Your roadrunner variable].conservedMoietyAnalysis = False, before calling the load('myfile.xml') method, or b: create a LoadSBMLOptions object, set the conservedMoieties property to False and use this as the second argument to the RoadRunner constructor or load() method, i.e. o = roadrunner.LoadSBMLOptions() o.conservedMoieties = False r = roadrunner.RoadRunner('myfile.xml', o)
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d5cb5f8016f90e7cbc7ad/download)
    [Logs](https://api.biosimulations.org/logs/677d5cb5f8016f90e7cbc7ad?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cb5f8016f90e7cbc7ad)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5cb23e750b90a426648c/download)
    [Logs](https://api.biosimulations.org/logs/677d5cb23e750b90a426648c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cb23e750b90a426648c)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01188-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01188-sbml-l3v2.xml)|pass|pass|pass|
    other Cannot perform moiety conversion with non-constant stoichiometry. The species reference which refers to species M does not have the constant attribute set. To disable conserved moiety conversion, either a: set [Your roadrunner variable].conservedMoietyAnalysis = False, before calling the load('myfile.xml') method, or b: create a LoadSBMLOptions object, set the conservedMoieties property to False and use this as the second argument to the RoadRunner constructor or load() method, i.e. o = roadrunner.LoadSBMLOptions() o.conservedMoieties = False r = roadrunner.RoadRunner('myfile.xml', o)
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d5cba67468f9f3fc5e13c/download)
    [Logs](https://api.biosimulations.org/logs/677d5cba67468f9f3fc5e13c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cba67468f9f3fc5e13c)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5cb7f8016f90e7cbc7b2/download)
    [Logs](https://api.biosimulations.org/logs/677d5cb7f8016f90e7cbc7b2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cb7f8016f90e7cbc7b2)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01189-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01189-sbml-l3v2.xml)|pass|pass|pass|
    other Cannot perform moiety conversion with non-constant stoichiometry. The species reference which refers to species M does not have the constant attribute set. To disable conserved moiety conversion, either a: set [Your roadrunner variable].conservedMoietyAnalysis = False, before calling the load('myfile.xml') method, or b: create a LoadSBMLOptions object, set the conservedMoieties property to False and use this as the second argument to the RoadRunner constructor or load() method, i.e. o = roadrunner.LoadSBMLOptions() o.conservedMoieties = False r = roadrunner.RoadRunner('myfile.xml', o)
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d5cc03e750b90a42664b3/download)
    [Logs](https://api.biosimulations.org/logs/677d5cc03e750b90a42664b3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cc03e750b90a42664b3)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5cbd67468f9f3fc5e14a/download)
    [Logs](https://api.biosimulations.org/logs/677d5cbd67468f9f3fc5e14a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cbd67468f9f3fc5e14a)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01190-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01190-sbml-l3v2.xml)|pass|pass|pass|
    other Cannot perform moiety conversion with non-constant stoichiometry. The species reference which refers to species M does not have the constant attribute set. To disable conserved moiety conversion, either a: set [Your roadrunner variable].conservedMoietyAnalysis = False, before calling the load('myfile.xml') method, or b: create a LoadSBMLOptions object, set the conservedMoieties property to False and use this as the second argument to the RoadRunner constructor or load() method, i.e. o = roadrunner.LoadSBMLOptions() o.conservedMoieties = False r = roadrunner.RoadRunner('myfile.xml', o)
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d5cc5f8016f90e7cbc7ea/download)
    [Logs](https://api.biosimulations.org/logs/677d5cc5f8016f90e7cbc7ea?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cc5f8016f90e7cbc7ea)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5cc23e750b90a42664c0/download)
    [Logs](https://api.biosimulations.org/logs/677d5cc23e750b90a42664c0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cc23e750b90a42664c0)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01191-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01191-sbml-l3v2.xml)|pass|pass|pass|
    other Cannot perform moiety conversion with non-constant stoichiometry. The species reference which refers to species M does not have the constant attribute set. To disable conserved moiety conversion, either a: set [Your roadrunner variable].conservedMoietyAnalysis = False, before calling the load('myfile.xml') method, or b: create a LoadSBMLOptions object, set the conservedMoieties property to False and use this as the second argument to the RoadRunner constructor or load() method, i.e. o = roadrunner.LoadSBMLOptions() o.conservedMoieties = False r = roadrunner.RoadRunner('myfile.xml', o)
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d5cca67468f9f3fc5e185/download)
    [Logs](https://api.biosimulations.org/logs/677d5cca67468f9f3fc5e185?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cca67468f9f3fc5e185)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5cc7f8016f90e7cbc7f1/download)
    [Logs](https://api.biosimulations.org/logs/677d5cc7f8016f90e7cbc7f1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cc7f8016f90e7cbc7f1)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01192-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01192-sbml-l3v2.xml)|pass|pass|pass|
    other Cannot perform moiety conversion with non-constant stoichiometry. The species reference which refers to species M does not have the constant attribute set. To disable conserved moiety conversion, either a: set [Your roadrunner variable].conservedMoietyAnalysis = False, before calling the load('myfile.xml') method, or b: create a LoadSBMLOptions object, set the conservedMoieties property to False and use this as the second argument to the RoadRunner constructor or load() method, i.e. o = roadrunner.LoadSBMLOptions() o.conservedMoieties = False r = roadrunner.RoadRunner('myfile.xml', o)
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d5ccff8016f90e7cbc80e/download)
    [Logs](https://api.biosimulations.org/logs/677d5ccff8016f90e7cbc80e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ccff8016f90e7cbc80e)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5ccdf8016f90e7cbc7fd/download)
    [Logs](https://api.biosimulations.org/logs/677d5ccdf8016f90e7cbc7fd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ccdf8016f90e7cbc7fd)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01193-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01193-sbml-l3v2.xml)|pass|pass|pass|
    other Cannot perform moiety conversion with non-constant stoichiometry. The species reference which refers to species M does not have the constant attribute set. To disable conserved moiety conversion, either a: set [Your roadrunner variable].conservedMoietyAnalysis = False, before calling the load('myfile.xml') method, or b: create a LoadSBMLOptions object, set the conservedMoieties property to False and use this as the second argument to the RoadRunner constructor or load() method, i.e. o = roadrunner.LoadSBMLOptions() o.conservedMoieties = False r = roadrunner.RoadRunner('myfile.xml', o)
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d5cd5f8016f90e7cbc830/download)
    [Logs](https://api.biosimulations.org/logs/677d5cd5f8016f90e7cbc830?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cd5f8016f90e7cbc830)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5cd2f8016f90e7cbc818/download)
    [Logs](https://api.biosimulations.org/logs/677d5cd2f8016f90e7cbc818?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cd2f8016f90e7cbc818)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01194-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01194-sbml-l3v2.xml)|pass|pass|pass|
    other Cannot perform moiety conversion with non-constant stoichiometry. The species reference which refers to species M does not have the constant attribute set. To disable conserved moiety conversion, either a: set [Your roadrunner variable].conservedMoietyAnalysis = False, before calling the load('myfile.xml') method, or b: create a LoadSBMLOptions object, set the conservedMoieties property to False and use this as the second argument to the RoadRunner constructor or load() method, i.e. o = roadrunner.LoadSBMLOptions() o.conservedMoieties = False r = roadrunner.RoadRunner('myfile.xml', o)
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d5cdbf8016f90e7cbc848/download)
    [Logs](https://api.biosimulations.org/logs/677d5cdbf8016f90e7cbc848?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cdbf8016f90e7cbc848)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5cd8f8016f90e7cbc839/download)
    [Logs](https://api.biosimulations.org/logs/677d5cd8f8016f90e7cbc839?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cd8f8016f90e7cbc839)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01195-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01195-sbml-l3v2.xml)|pass|pass|pass|
    other Cannot perform moiety conversion with non-constant stoichiometry. The species reference which refers to species M does not have the constant attribute set. To disable conserved moiety conversion, either a: set [Your roadrunner variable].conservedMoietyAnalysis = False, before calling the load('myfile.xml') method, or b: create a LoadSBMLOptions object, set the conservedMoieties property to False and use this as the second argument to the RoadRunner constructor or load() method, i.e. o = roadrunner.LoadSBMLOptions() o.conservedMoieties = False r = roadrunner.RoadRunner('myfile.xml', o)
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d5ce067468f9f3fc5e1ea/download)
    [Logs](https://api.biosimulations.org/logs/677d5ce067468f9f3fc5e1ea?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ce067468f9f3fc5e1ea)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5cdd67468f9f3fc5e1df/download)
    [Logs](https://api.biosimulations.org/logs/677d5cdd67468f9f3fc5e1df?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cdd67468f9f3fc5e1df)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01196-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01196-sbml-l3v2.xml)|pass|pass|pass|
    other Cannot perform moiety conversion with non-constant stoichiometry. The species reference which refers to species M does not have the constant attribute set. To disable conserved moiety conversion, either a: set [Your roadrunner variable].conservedMoietyAnalysis = False, before calling the load('myfile.xml') method, or b: create a LoadSBMLOptions object, set the conservedMoieties property to False and use this as the second argument to the RoadRunner constructor or load() method, i.e. o = roadrunner.LoadSBMLOptions() o.conservedMoieties = False r = roadrunner.RoadRunner('myfile.xml', o)
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d5ce8f8016f90e7cbc87e/download)
    [Logs](https://api.biosimulations.org/logs/677d5ce8f8016f90e7cbc87e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ce8f8016f90e7cbc87e)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d5ce5f8016f90e7cbc86c/download)
    [Logs](https://api.biosimulations.org/logs/677d5ce5f8016f90e7cbc86c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ce5f8016f90e7cbc86c)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01197-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01197-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ced67468f9f3fc5e22b/download)
    [Logs](https://api.biosimulations.org/logs/677d5ced67468f9f3fc5e22b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ced67468f9f3fc5e22b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5cebf8016f90e7cbc889/download)
    [Logs](https://api.biosimulations.org/logs/677d5cebf8016f90e7cbc889?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cebf8016f90e7cbc889)

    HTTP response: 201| +|[01198-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01198-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5cf23e750b90a4266589/download)
    [Logs](https://api.biosimulations.org/logs/677d5cf23e750b90a4266589?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cf23e750b90a4266589)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5cf067468f9f3fc5e240/download)
    [Logs](https://api.biosimulations.org/logs/677d5cf067468f9f3fc5e240?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cf067468f9f3fc5e240)

    HTTP response: 201| +|[01199-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01199-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5cf767468f9f3fc5e24e/download)
    [Logs](https://api.biosimulations.org/logs/677d5cf767468f9f3fc5e24e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cf767468f9f3fc5e24e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5cf53e750b90a4266591/download)
    [Logs](https://api.biosimulations.org/logs/677d5cf53e750b90a4266591?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cf53e750b90a4266591)

    HTTP response: 201| +|[01200-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01200-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5cfcf8016f90e7cbc8cb/download)
    [Logs](https://api.biosimulations.org/logs/677d5cfcf8016f90e7cbc8cb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cfcf8016f90e7cbc8cb)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5cfa3e750b90a42665a1/download)
    [Logs](https://api.biosimulations.org/logs/677d5cfa3e750b90a42665a1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cfa3e750b90a42665a1)

    HTTP response: 201| +|[01201-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01201-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d0267468f9f3fc5e27a/download)
    [Logs](https://api.biosimulations.org/logs/677d5d0267468f9f3fc5e27a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d0267468f9f3fc5e27a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5cff67468f9f3fc5e26e/download)
    [Logs](https://api.biosimulations.org/logs/677d5cff67468f9f3fc5e26e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5cff67468f9f3fc5e26e)

    HTTP response: 201| +|[01202-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01202-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d07f8016f90e7cbc8fc/download)
    [Logs](https://api.biosimulations.org/logs/677d5d07f8016f90e7cbc8fc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d07f8016f90e7cbc8fc)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d05f8016f90e7cbc8e3/download)
    [Logs](https://api.biosimulations.org/logs/677d5d05f8016f90e7cbc8e3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d05f8016f90e7cbc8e3)

    HTTP response: 201| +|[01203-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01203-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d0cf8016f90e7cbc908/download)
    [Logs](https://api.biosimulations.org/logs/677d5d0cf8016f90e7cbc908?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d0cf8016f90e7cbc908)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d0a3e750b90a42665df/download)
    [Logs](https://api.biosimulations.org/logs/677d5d0a3e750b90a42665df?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d0a3e750b90a42665df)

    HTTP response: 201| +|[01204-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01204-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d11f8016f90e7cbc91a/download)
    [Logs](https://api.biosimulations.org/logs/677d5d11f8016f90e7cbc91a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d11f8016f90e7cbc91a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d0f3e750b90a42665e6/download)
    [Logs](https://api.biosimulations.org/logs/677d5d0f3e750b90a42665e6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d0f3e750b90a42665e6)

    HTTP response: 201| +|[01205-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01205-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d1767468f9f3fc5e2d3/download)
    [Logs](https://api.biosimulations.org/logs/677d5d1767468f9f3fc5e2d3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d1767468f9f3fc5e2d3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d143e750b90a4266600/download)
    [Logs](https://api.biosimulations.org/logs/677d5d143e750b90a4266600?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d143e750b90a4266600)

    HTTP response: 201| +|[01206-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01206-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d1c67468f9f3fc5e2eb/download)
    [Logs](https://api.biosimulations.org/logs/677d5d1c67468f9f3fc5e2eb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d1c67468f9f3fc5e2eb)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d1a3e750b90a426661d/download)
    [Logs](https://api.biosimulations.org/logs/677d5d1a3e750b90a426661d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d1a3e750b90a426661d)

    HTTP response: 201| +|[01207-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01207-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d213e750b90a4266632/download)
    [Logs](https://api.biosimulations.org/logs/677d5d213e750b90a4266632?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d213e750b90a4266632)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d1ff8016f90e7cbc95f/download)
    [Logs](https://api.biosimulations.org/logs/677d5d1ff8016f90e7cbc95f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d1ff8016f90e7cbc95f)

    HTTP response: 201| +|[01208-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01208-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d2667468f9f3fc5e313/download)
    [Logs](https://api.biosimulations.org/logs/677d5d2667468f9f3fc5e313?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d2667468f9f3fc5e313)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d24f8016f90e7cbc970/download)
    [Logs](https://api.biosimulations.org/logs/677d5d24f8016f90e7cbc970?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d24f8016f90e7cbc970)

    HTTP response: 201| +|[01209-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01209-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d2c67468f9f3fc5e327/download)
    [Logs](https://api.biosimulations.org/logs/677d5d2c67468f9f3fc5e327?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d2c67468f9f3fc5e327)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d2967468f9f3fc5e31d/download)
    [Logs](https://api.biosimulations.org/logs/677d5d2967468f9f3fc5e31d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d2967468f9f3fc5e31d)

    HTTP response: 201| +|[01210-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01210-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d32f8016f90e7cbc9af/download)
    [Logs](https://api.biosimulations.org/logs/677d5d32f8016f90e7cbc9af?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d32f8016f90e7cbc9af)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d2ff8016f90e7cbc9a6/download)
    [Logs](https://api.biosimulations.org/logs/677d5d2ff8016f90e7cbc9a6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d2ff8016f90e7cbc9a6)

    HTTP response: 201| +|[01211-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01211-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d3767468f9f3fc5e347/download)
    [Logs](https://api.biosimulations.org/logs/677d5d3767468f9f3fc5e347?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d3767468f9f3fc5e347)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d353e750b90a4266685/download)
    [Logs](https://api.biosimulations.org/logs/677d5d353e750b90a4266685?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d353e750b90a4266685)

    HTTP response: 201| +|[01212-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01212-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d3df8016f90e7cbc9ec/download)
    [Logs](https://api.biosimulations.org/logs/677d5d3df8016f90e7cbc9ec?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d3df8016f90e7cbc9ec)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d3a67468f9f3fc5e357/download)
    [Logs](https://api.biosimulations.org/logs/677d5d3a67468f9f3fc5e357?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d3a67468f9f3fc5e357)

    HTTP response: 201| +|[01213-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01213-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d42f8016f90e7cbc9f6/download)
    [Logs](https://api.biosimulations.org/logs/677d5d42f8016f90e7cbc9f6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d42f8016f90e7cbc9f6)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d3ff8016f90e7cbc9ef/download)
    [Logs](https://api.biosimulations.org/logs/677d5d3ff8016f90e7cbc9ef?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d3ff8016f90e7cbc9ef)

    HTTP response: 201| +|[01214-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01214-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d4867468f9f3fc5e389/download)
    [Logs](https://api.biosimulations.org/logs/677d5d4867468f9f3fc5e389?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d4867468f9f3fc5e389)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d453e750b90a42666b7/download)
    [Logs](https://api.biosimulations.org/logs/677d5d453e750b90a42666b7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d453e750b90a42666b7)

    HTTP response: 201| +|[01215-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01215-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d4df8016f90e7cbca1d/download)
    [Logs](https://api.biosimulations.org/logs/677d5d4df8016f90e7cbca1d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d4df8016f90e7cbca1d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d4bf8016f90e7cbca18/download)
    [Logs](https://api.biosimulations.org/logs/677d5d4bf8016f90e7cbca18?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d4bf8016f90e7cbca18)

    HTTP response: 201| +|[01216-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01216-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d52f8016f90e7cbca2e/download)
    [Logs](https://api.biosimulations.org/logs/677d5d52f8016f90e7cbca2e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5d52f8016f90e7cbca2e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d503e750b90a42666ea/download)
    [Logs](https://api.biosimulations.org/logs/677d5d503e750b90a42666ea?includeOutput=true)
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    HTTP response: 201| +|[01217-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01217-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d57f8016f90e7cbca44/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d55f8016f90e7cbca3f/download)
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    HTTP response: 201| +|[01218-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01218-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d5cf8016f90e7cbca59/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d5af8016f90e7cbca4a/download)
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    HTTP response: 201| +|[01219-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01219-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d61f8016f90e7cbca6a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d5e3e750b90a4266735/download)
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    HTTP response: 201| +|[01220-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01220-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d6667468f9f3fc5e3ff/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d643e750b90a4266744/download)
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    HTTP response: 201| +|[01221-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01221-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d6bf8016f90e7cbca92/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d68f8016f90e7cbca8a/download)
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    HTTP response: 201| +|[01222-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01222-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d713e750b90a426677d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d6e3e750b90a4266770/download)
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    HTTP response: 201| +|[01223-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01223-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d763e750b90a4266790/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d743e750b90a426678b/download)
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    HTTP response: 201| +|[01224-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01224-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d7b3e750b90a426679d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d7967468f9f3fc5e455/download)
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    HTTP response: 201| +|[01225-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01225-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d80f8016f90e7cbcad6/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d7e3e750b90a42667a3/download)
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    HTTP response: 201| +|[01226-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01226-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d863e750b90a42667c4/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d83f8016f90e7cbcadb/download)
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    HTTP response: 201| +|[01227-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01227-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d8a3e750b90a42667dc/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d88f8016f90e7cbcafc/download)
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    HTTP response: 201| +|[01228-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01228-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d8f67468f9f3fc5e4b3/download)
    [Logs](https://api.biosimulations.org/logs/677d5d8f67468f9f3fc5e4b3?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d8d3e750b90a42667ed/download)
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    HTTP response: 201| +|[01229-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01229-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d9567468f9f3fc5e4d8/download)
    [Logs](https://api.biosimulations.org/logs/677d5d9567468f9f3fc5e4d8?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d9367468f9f3fc5e4be/download)
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    HTTP response: 201| +|[01230-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01230-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5d9af8016f90e7cbcb3f/download)
    [Logs](https://api.biosimulations.org/logs/677d5d9af8016f90e7cbcb3f?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d983e750b90a4266805/download)
    [Logs](https://api.biosimulations.org/logs/677d5d983e750b90a4266805?includeOutput=true)
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    HTTP response: 201| +|[01231-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01231-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5da1f8016f90e7cbcb57/download)
    [Logs](https://api.biosimulations.org/logs/677d5da1f8016f90e7cbcb57?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5d9ef8016f90e7cbcb50/download)
    [Logs](https://api.biosimulations.org/logs/677d5d9ef8016f90e7cbcb50?includeOutput=true)
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    HTTP response: 201| +|[01232-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01232-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5da667468f9f3fc5e509/download)
    [Logs](https://api.biosimulations.org/logs/677d5da667468f9f3fc5e509?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5da43e750b90a426683b/download)
    [Logs](https://api.biosimulations.org/logs/677d5da43e750b90a426683b?includeOutput=true)
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    HTTP response: 201| +|[01233-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01233-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5daa67468f9f3fc5e516/download)
    [Logs](https://api.biosimulations.org/logs/677d5daa67468f9f3fc5e516?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5da83e750b90a426684f/download)
    [Logs](https://api.biosimulations.org/logs/677d5da83e750b90a426684f?includeOutput=true)
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    HTTP response: 201| +|[01234-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01234-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5daf3e750b90a4266873/download)
    [Logs](https://api.biosimulations.org/logs/677d5daf3e750b90a4266873?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5dad67468f9f3fc5e536/download)
    [Logs](https://api.biosimulations.org/logs/677d5dad67468f9f3fc5e536?includeOutput=true)
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    HTTP response: 201| +|[01235-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01235-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5db43e750b90a4266882/download)
    [Logs](https://api.biosimulations.org/logs/677d5db43e750b90a4266882?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5db2f8016f90e7cbcb82/download)
    [Logs](https://api.biosimulations.org/logs/677d5db2f8016f90e7cbcb82?includeOutput=true)
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    HTTP response: 201| +|[01236-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01236-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5db9f8016f90e7cbcba8/download)
    [Logs](https://api.biosimulations.org/logs/677d5db9f8016f90e7cbcba8?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5db767468f9f3fc5e55c/download)
    [Logs](https://api.biosimulations.org/logs/677d5db767468f9f3fc5e55c?includeOutput=true)
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    HTTP response: 201| +|[01237-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01237-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5dbf67468f9f3fc5e58e/download)
    [Logs](https://api.biosimulations.org/logs/677d5dbf67468f9f3fc5e58e?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5dbcf8016f90e7cbcbb3/download)
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    HTTP response: 201| +|[01238-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01238-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5dc567468f9f3fc5e5a5/download)
    [Logs](https://api.biosimulations.org/logs/677d5dc567468f9f3fc5e5a5?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5dc267468f9f3fc5e59b/download)
    [Logs](https://api.biosimulations.org/logs/677d5dc267468f9f3fc5e59b?includeOutput=true)
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    HTTP response: 201| +|[01239-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01239-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5dca67468f9f3fc5e5ad/download)
    [Logs](https://api.biosimulations.org/logs/677d5dca67468f9f3fc5e5ad?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5dc73e750b90a42668e3/download)
    [Logs](https://api.biosimulations.org/logs/677d5dc73e750b90a42668e3?includeOutput=true)
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    HTTP response: 201| +|[01240-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01240-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5dd13e750b90a426690b/download)
    [Logs](https://api.biosimulations.org/logs/677d5dd13e750b90a426690b?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5dcef8016f90e7cbcbfe/download)
    [Logs](https://api.biosimulations.org/logs/677d5dcef8016f90e7cbcbfe?includeOutput=true)
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    HTTP response: 201| +|[01241-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01241-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5dd867468f9f3fc5e5f7/download)
    [Logs](https://api.biosimulations.org/logs/677d5dd867468f9f3fc5e5f7?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5dd5f8016f90e7cbcc19/download)
    [Logs](https://api.biosimulations.org/logs/677d5dd5f8016f90e7cbcc19?includeOutput=true)
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    HTTP response: 201| +|[01242-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01242-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ddd3e750b90a4266935/download)
    [Logs](https://api.biosimulations.org/logs/677d5ddd3e750b90a4266935?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ddd3e750b90a4266935)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ddb3e750b90a426692d/download)
    [Logs](https://api.biosimulations.org/logs/677d5ddb3e750b90a426692d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ddb3e750b90a426692d)

    HTTP response: 201| +|[01243-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01243-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5de267468f9f3fc5e61c/download)
    [Logs](https://api.biosimulations.org/logs/677d5de267468f9f3fc5e61c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5de267468f9f3fc5e61c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5de0f8016f90e7cbcc44/download)
    [Logs](https://api.biosimulations.org/logs/677d5de0f8016f90e7cbcc44?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5de0f8016f90e7cbcc44)

    HTTP response: 201| +|[01244-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01244-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5de83e750b90a4266955/download)
    [Logs](https://api.biosimulations.org/logs/677d5de83e750b90a4266955?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5de83e750b90a4266955)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5de5f8016f90e7cbcc62/download)
    [Logs](https://api.biosimulations.org/logs/677d5de5f8016f90e7cbcc62?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5de5f8016f90e7cbcc62)

    HTTP response: 201| +|[01245-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01245-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ded3e750b90a4266968/download)
    [Logs](https://api.biosimulations.org/logs/677d5ded3e750b90a4266968?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ded3e750b90a4266968)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5deb3e750b90a4266960/download)
    [Logs](https://api.biosimulations.org/logs/677d5deb3e750b90a4266960?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5deb3e750b90a4266960)

    HTTP response: 201| +|[01246-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01246-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5df43e750b90a426697a/download)
    [Logs](https://api.biosimulations.org/logs/677d5df43e750b90a426697a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5df43e750b90a426697a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5df167468f9f3fc5e660/download)
    [Logs](https://api.biosimulations.org/logs/677d5df167468f9f3fc5e660?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5df167468f9f3fc5e660)

    HTTP response: 201| +|[01247-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01247-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5dfa3e750b90a4266998/download)
    [Logs](https://api.biosimulations.org/logs/677d5dfa3e750b90a4266998?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5dfa3e750b90a4266998)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5df867468f9f3fc5e67d/download)
    [Logs](https://api.biosimulations.org/logs/677d5df867468f9f3fc5e67d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5df867468f9f3fc5e67d)

    HTTP response: 201| +|[01248-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01248-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e0067468f9f3fc5e697/download)
    [Logs](https://api.biosimulations.org/logs/677d5e0067468f9f3fc5e697?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e0067468f9f3fc5e697)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5dfdf8016f90e7cbcca5/download)
    [Logs](https://api.biosimulations.org/logs/677d5dfdf8016f90e7cbcca5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5dfdf8016f90e7cbcca5)

    HTTP response: 201| +|[01249-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01249-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e053e750b90a42669b1/download)
    [Logs](https://api.biosimulations.org/logs/677d5e053e750b90a42669b1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e053e750b90a42669b1)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e0267468f9f3fc5e69d/download)
    [Logs](https://api.biosimulations.org/logs/677d5e0267468f9f3fc5e69d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e0267468f9f3fc5e69d)

    HTTP response: 201| +|[01250-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01250-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e0af8016f90e7cbccd5/download)
    [Logs](https://api.biosimulations.org/logs/677d5e0af8016f90e7cbccd5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e0af8016f90e7cbccd5)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e073e750b90a42669ba/download)
    [Logs](https://api.biosimulations.org/logs/677d5e073e750b90a42669ba?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e073e750b90a42669ba)

    HTTP response: 201| +|[01251-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01251-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e10f8016f90e7cbcce4/download)
    [Logs](https://api.biosimulations.org/logs/677d5e10f8016f90e7cbcce4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e10f8016f90e7cbcce4)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e0df8016f90e7cbccdd/download)
    [Logs](https://api.biosimulations.org/logs/677d5e0df8016f90e7cbccdd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e0df8016f90e7cbccdd)

    HTTP response: 201| +|[01252-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01252-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e17f8016f90e7cbcd0f/download)
    [Logs](https://api.biosimulations.org/logs/677d5e17f8016f90e7cbcd0f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e17f8016f90e7cbcd0f)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e14f8016f90e7cbccef/download)
    [Logs](https://api.biosimulations.org/logs/677d5e14f8016f90e7cbccef?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e14f8016f90e7cbccef)

    HTTP response: 201| +|[01253-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01253-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e1d67468f9f3fc5e71b/download)
    [Logs](https://api.biosimulations.org/logs/677d5e1d67468f9f3fc5e71b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e1d67468f9f3fc5e71b)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e1a67468f9f3fc5e706/download)
    [Logs](https://api.biosimulations.org/logs/677d5e1a67468f9f3fc5e706?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e1a67468f9f3fc5e706)

    HTTP response: 201| +|[01254-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01254-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e2267468f9f3fc5e727/download)
    [Logs](https://api.biosimulations.org/logs/677d5e2267468f9f3fc5e727?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e2267468f9f3fc5e727)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e1f3e750b90a4266a1b/download)
    [Logs](https://api.biosimulations.org/logs/677d5e1f3e750b90a4266a1b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e1f3e750b90a4266a1b)

    HTTP response: 201| +|[01255-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01255-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e273e750b90a4266a31/download)
    [Logs](https://api.biosimulations.org/logs/677d5e273e750b90a4266a31?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e273e750b90a4266a31)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e253e750b90a4266a27/download)
    [Logs](https://api.biosimulations.org/logs/677d5e253e750b90a4266a27?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e253e750b90a4266a27)

    HTTP response: 201| +|[01256-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01256-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e2ef8016f90e7cbcd50/download)
    [Logs](https://api.biosimulations.org/logs/677d5e2ef8016f90e7cbcd50?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e2ef8016f90e7cbcd50)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e2af8016f90e7cbcd46/download)
    [Logs](https://api.biosimulations.org/logs/677d5e2af8016f90e7cbcd46?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e2af8016f90e7cbcd46)

    HTTP response: 201| +|[01257-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01257-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e3367468f9f3fc5e76d/download)
    [Logs](https://api.biosimulations.org/logs/677d5e3367468f9f3fc5e76d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e3367468f9f3fc5e76d)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e3167468f9f3fc5e764/download)
    [Logs](https://api.biosimulations.org/logs/677d5e3167468f9f3fc5e764?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e3167468f9f3fc5e764)

    HTTP response: 201| +|[01258-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01258-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e38f8016f90e7cbcd76/download)
    [Logs](https://api.biosimulations.org/logs/677d5e38f8016f90e7cbcd76?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e38f8016f90e7cbcd76)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e353e750b90a4266a56/download)
    [Logs](https://api.biosimulations.org/logs/677d5e353e750b90a4266a56?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e353e750b90a4266a56)

    HTTP response: 201| +|[01259-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01259-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e3e67468f9f3fc5e799/download)
    [Logs](https://api.biosimulations.org/logs/677d5e3e67468f9f3fc5e799?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e3e67468f9f3fc5e799)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e3b67468f9f3fc5e794/download)
    [Logs](https://api.biosimulations.org/logs/677d5e3b67468f9f3fc5e794?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e3b67468f9f3fc5e794)

    HTTP response: 201| +|[01260-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01260-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e443e750b90a4266a9c/download)
    [Logs](https://api.biosimulations.org/logs/677d5e443e750b90a4266a9c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e443e750b90a4266a9c)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e413e750b90a4266a97/download)
    [Logs](https://api.biosimulations.org/logs/677d5e413e750b90a4266a97?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e413e750b90a4266a97)

    HTTP response: 201| +|[01261-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01261-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e493e750b90a4266aad/download)
    [Logs](https://api.biosimulations.org/logs/677d5e493e750b90a4266aad?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e493e750b90a4266aad)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e4667468f9f3fc5e7ac/download)
    [Logs](https://api.biosimulations.org/logs/677d5e4667468f9f3fc5e7ac?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e4667468f9f3fc5e7ac)

    HTTP response: 201| +|[01262-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01262-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e4e3e750b90a4266ad7/download)
    [Logs](https://api.biosimulations.org/logs/677d5e4e3e750b90a4266ad7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e4e3e750b90a4266ad7)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e4bf8016f90e7cbcdcd/download)
    [Logs](https://api.biosimulations.org/logs/677d5e4bf8016f90e7cbcdcd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e4bf8016f90e7cbcdcd)

    HTTP response: 201| +|[01263-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01263-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e543e750b90a4266aee/download)
    [Logs](https://api.biosimulations.org/logs/677d5e543e750b90a4266aee?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e543e750b90a4266aee)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e513e750b90a4266ae1/download)
    [Logs](https://api.biosimulations.org/logs/677d5e513e750b90a4266ae1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e513e750b90a4266ae1)

    HTTP response: 201| +|[01264-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01264-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e5af8016f90e7cbcdff/download)
    [Logs](https://api.biosimulations.org/logs/677d5e5af8016f90e7cbcdff?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e5af8016f90e7cbcdff)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e5767468f9f3fc5e803/download)
    [Logs](https://api.biosimulations.org/logs/677d5e5767468f9f3fc5e803?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e5767468f9f3fc5e803)

    HTTP response: 201| +|[01265-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01265-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e603e750b90a4266b26/download)
    [Logs](https://api.biosimulations.org/logs/677d5e603e750b90a4266b26?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e603e750b90a4266b26)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e5d3e750b90a4266b1f/download)
    [Logs](https://api.biosimulations.org/logs/677d5e5d3e750b90a4266b1f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e5d3e750b90a4266b1f)

    HTTP response: 201| +|[01266-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01266-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e6667468f9f3fc5e829/download)
    [Logs](https://api.biosimulations.org/logs/677d5e6667468f9f3fc5e829?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e6667468f9f3fc5e829)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e64f8016f90e7cbce1d/download)
    [Logs](https://api.biosimulations.org/logs/677d5e64f8016f90e7cbce1d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e64f8016f90e7cbce1d)

    HTTP response: 201| +|[01267-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01267-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e6c67468f9f3fc5e845/download)
    [Logs](https://api.biosimulations.org/logs/677d5e6c67468f9f3fc5e845?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e6c67468f9f3fc5e845)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e6967468f9f3fc5e83d/download)
    [Logs](https://api.biosimulations.org/logs/677d5e6967468f9f3fc5e83d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e6967468f9f3fc5e83d)

    HTTP response: 201| +|[01268-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01268-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e713e750b90a4266b57/download)
    [Logs](https://api.biosimulations.org/logs/677d5e713e750b90a4266b57?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e713e750b90a4266b57)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e6ff8016f90e7cbce49/download)
    [Logs](https://api.biosimulations.org/logs/677d5e6ff8016f90e7cbce49?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e6ff8016f90e7cbce49)

    HTTP response: 201| +|[01269-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01269-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e7667468f9f3fc5e85d/download)
    [Logs](https://api.biosimulations.org/logs/677d5e7667468f9f3fc5e85d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e7667468f9f3fc5e85d)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e743e750b90a4266b67/download)
    [Logs](https://api.biosimulations.org/logs/677d5e743e750b90a4266b67?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e743e750b90a4266b67)

    HTTP response: 201| +|[01270-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01270-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5e7bf8016f90e7cbce76/download)
    [Logs](https://api.biosimulations.org/logs/677d5e7bf8016f90e7cbce76?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e7bf8016f90e7cbce76)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5e793e750b90a4266b83/download)
    [Logs](https://api.biosimulations.org/logs/677d5e793e750b90a4266b83?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e793e750b90a4266b83)

    HTTP response: 201| +|[01271-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01271-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5e813e750b90a4266b95/download)
    [Logs](https://api.biosimulations.org/logs/677d5e813e750b90a4266b95?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e813e750b90a4266b95)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5e7f67468f9f3fc5e886/download)
    [Logs](https://api.biosimulations.org/logs/677d5e7f67468f9f3fc5e886?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e7f67468f9f3fc5e886)

    HTTP response: 201| +|[01272-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01272-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5e863e750b90a4266bae/download)
    [Logs](https://api.biosimulations.org/logs/677d5e863e750b90a4266bae?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e863e750b90a4266bae)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5e843e750b90a4266ba4/download)
    [Logs](https://api.biosimulations.org/logs/677d5e843e750b90a4266ba4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e843e750b90a4266ba4)

    HTTP response: 201| +|[01273-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01273-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5e8b3e750b90a4266bc2/download)
    [Logs](https://api.biosimulations.org/logs/677d5e8b3e750b90a4266bc2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e8b3e750b90a4266bc2)

    HTTP response: 201|
    FAIL[Download](https://api.biosimulations.org/results/677d5e893e750b90a4266bb9/download)
    [Logs](https://api.biosimulations.org/logs/677d5e893e750b90a4266bb9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e893e750b90a4266bb9)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :("SBML '/tmp/tmpxynsbn6j/./01273-sbml-l3v2.xml' could not be imported into COPASI;\n\t", >)```

    Exception type: ```CombineArchiveExecutionError```| +|[01274-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01274-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5e90f8016f90e7cbcee0/download)
    [Logs](https://api.biosimulations.org/logs/677d5e90f8016f90e7cbcee0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e90f8016f90e7cbcee0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5e8e3e750b90a4266bda/download)
    [Logs](https://api.biosimulations.org/logs/677d5e8e3e750b90a4266bda?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e8e3e750b90a4266bda)

    HTTP response: 201| +|[01275-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01275-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5e9567468f9f3fc5e8da/download)
    [Logs](https://api.biosimulations.org/logs/677d5e9567468f9f3fc5e8da?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e9567468f9f3fc5e8da)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5e923e750b90a4266bf6/download)
    [Logs](https://api.biosimulations.org/logs/677d5e923e750b90a4266bf6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e923e750b90a4266bf6)

    HTTP response: 201| +|[01276-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01276-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5e9967468f9f3fc5e8f0/download)
    [Logs](https://api.biosimulations.org/logs/677d5e9967468f9f3fc5e8f0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e9967468f9f3fc5e8f0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5e97f8016f90e7cbcefc/download)
    [Logs](https://api.biosimulations.org/logs/677d5e97f8016f90e7cbcefc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e97f8016f90e7cbcefc)

    HTTP response: 201| +|[01277-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01277-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5e9e67468f9f3fc5e8fe/download)
    [Logs](https://api.biosimulations.org/logs/677d5e9e67468f9f3fc5e8fe?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e9e67468f9f3fc5e8fe)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5e9c3e750b90a4266c13/download)
    [Logs](https://api.biosimulations.org/logs/677d5e9c3e750b90a4266c13?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5e9c3e750b90a4266c13)

    HTTP response: 201| +|[01278-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01278-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ea33e750b90a4266c3a/download)
    [Logs](https://api.biosimulations.org/logs/677d5ea33e750b90a4266c3a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ea33e750b90a4266c3a)

    HTTP response: 201|
    FAIL[Download](https://api.biosimulations.org/results/677d5ea1f8016f90e7cbcf24/download)
    [Logs](https://api.biosimulations.org/logs/677d5ea1f8016f90e7cbcf24?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ea1f8016f90e7cbcf24)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :("SBML '/tmp/tmpfr_s4d9u/./01278-sbml-l3v2.xml' could not be imported into COPASI;\n\t", >)```

    Exception type: ```CombineArchiveExecutionError```| +|[01279-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01279-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ea867468f9f3fc5e920/download)
    [Logs](https://api.biosimulations.org/logs/677d5ea867468f9f3fc5e920?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ea867468f9f3fc5e920)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ea63e750b90a4266c47/download)
    [Logs](https://api.biosimulations.org/logs/677d5ea63e750b90a4266c47?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ea63e750b90a4266c47)

    HTTP response: 201| +|[01280-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01280-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5eadf8016f90e7cbcf5c/download)
    [Logs](https://api.biosimulations.org/logs/677d5eadf8016f90e7cbcf5c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5eadf8016f90e7cbcf5c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5eab67468f9f3fc5e933/download)
    [Logs](https://api.biosimulations.org/logs/677d5eab67468f9f3fc5e933?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5eab67468f9f3fc5e933)

    HTTP response: 201| +|[01281-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01281-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5eb23e750b90a4266c74/download)
    [Logs](https://api.biosimulations.org/logs/677d5eb23e750b90a4266c74?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5eb23e750b90a4266c74)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5eb0f8016f90e7cbcf68/download)
    [Logs](https://api.biosimulations.org/logs/677d5eb0f8016f90e7cbcf68?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5eb0f8016f90e7cbcf68)

    HTTP response: 201| +|[01282-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01282-sbml-l3v2.xml)|pass|FAIL|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5eb667468f9f3fc5e952/download)
    [Logs](https://api.biosimulations.org/logs/677d5eb667468f9f3fc5e952?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5eb667468f9f3fc5e952)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5eb43e750b90a4266c7b/download)
    [Logs](https://api.biosimulations.org/logs/677d5eb43e750b90a4266c7b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5eb43e750b90a4266c7b)

    HTTP response: 201| +|[01283-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01283-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ebc3e750b90a4266c9c/download)
    [Logs](https://api.biosimulations.org/logs/677d5ebc3e750b90a4266c9c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ebc3e750b90a4266c9c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5eb967468f9f3fc5e95e/download)
    [Logs](https://api.biosimulations.org/logs/677d5eb967468f9f3fc5e95e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5eb967468f9f3fc5e95e)

    HTTP response: 201| +|[01284-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01284-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ec13e750b90a4266cb3/download)
    [Logs](https://api.biosimulations.org/logs/677d5ec13e750b90a4266cb3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ec13e750b90a4266cb3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ebf3e750b90a4266ca3/download)
    [Logs](https://api.biosimulations.org/logs/677d5ebf3e750b90a4266ca3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ebf3e750b90a4266ca3)

    HTTP response: 201| +|[01285-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01285-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ec867468f9f3fc5e9a2/download)
    [Logs](https://api.biosimulations.org/logs/677d5ec867468f9f3fc5e9a2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ec867468f9f3fc5e9a2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ec667468f9f3fc5e999/download)
    [Logs](https://api.biosimulations.org/logs/677d5ec667468f9f3fc5e999?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ec667468f9f3fc5e999)

    HTTP response: 201| +|[01286-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01286-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ecd67468f9f3fc5e9bc/download)
    [Logs](https://api.biosimulations.org/logs/677d5ecd67468f9f3fc5e9bc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ecd67468f9f3fc5e9bc)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ecbf8016f90e7cbcfdd/download)
    [Logs](https://api.biosimulations.org/logs/677d5ecbf8016f90e7cbcfdd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ecbf8016f90e7cbcfdd)

    HTTP response: 201| +|[01287-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01287-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ed23e750b90a4266cf8/download)
    [Logs](https://api.biosimulations.org/logs/677d5ed23e750b90a4266cf8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ed23e750b90a4266cf8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ed067468f9f3fc5e9d1/download)
    [Logs](https://api.biosimulations.org/logs/677d5ed067468f9f3fc5e9d1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ed067468f9f3fc5e9d1)

    HTTP response: 201| +|[01288-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01288-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ed83e750b90a4266d19/download)
    [Logs](https://api.biosimulations.org/logs/677d5ed83e750b90a4266d19?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ed83e750b90a4266d19)

    HTTP response: 201|
    None[Download](https://api.biosimulations.org/results/677d5ed5f8016f90e7cbd004/download)
    [Logs](https://api.biosimulations.org/logs/677d5ed5f8016f90e7cbd004?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ed5f8016f90e7cbd004)

    HTTP response: 201| +|[01289-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01289-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5edd3e750b90a4266d2b/download)
    [Logs](https://api.biosimulations.org/logs/677d5edd3e750b90a4266d2b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5edd3e750b90a4266d2b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5edb3e750b90a4266d22/download)
    [Logs](https://api.biosimulations.org/logs/677d5edb3e750b90a4266d22?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5edb3e750b90a4266d22)

    HTTP response: 201| +|[01290-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01290-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ee267468f9f3fc5ea1c/download)
    [Logs](https://api.biosimulations.org/logs/677d5ee267468f9f3fc5ea1c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ee267468f9f3fc5ea1c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ee03e750b90a4266d33/download)
    [Logs](https://api.biosimulations.org/logs/677d5ee03e750b90a4266d33?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ee03e750b90a4266d33)

    HTTP response: 201| +|[01291-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01291-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ee767468f9f3fc5ea33/download)
    [Logs](https://api.biosimulations.org/logs/677d5ee767468f9f3fc5ea33?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ee767468f9f3fc5ea33)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ee53e750b90a4266d46/download)
    [Logs](https://api.biosimulations.org/logs/677d5ee53e750b90a4266d46?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ee53e750b90a4266d46)

    HTTP response: 201| +|[01292-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01292-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = p1 - true' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d5eeb67468f9f3fc5ea3e/download)
    [Logs](https://api.biosimulations.org/logs/677d5eeb67468f9f3fc5ea3e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5eeb67468f9f3fc5ea3e)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'p1' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5ee93e750b90a4266d59/download)
    [Logs](https://api.biosimulations.org/logs/677d5ee93e750b90a4266d59?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ee93e750b90a4266d59)

    HTTP response: 201| +|[01293-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01293-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5ef1f8016f90e7cbd09b/download)
    [Logs](https://api.biosimulations.org/logs/677d5ef1f8016f90e7cbd09b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ef1f8016f90e7cbd09b)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5eee67468f9f3fc5ea48/download)
    [Logs](https://api.biosimulations.org/logs/677d5eee67468f9f3fc5ea48?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5eee67468f9f3fc5ea48)

    HTTP response: 201| +|[01294-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01294-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5ef6f8016f90e7cbd0b1/download)
    [Logs](https://api.biosimulations.org/logs/677d5ef6f8016f90e7cbd0b1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ef6f8016f90e7cbd0b1)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5ef43e750b90a4266d7a/download)
    [Logs](https://api.biosimulations.org/logs/677d5ef43e750b90a4266d7a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ef43e750b90a4266d7a)

    HTTP response: 201| +|[01295-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01295-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5efb3e750b90a4266d97/download)
    [Logs](https://api.biosimulations.org/logs/677d5efb3e750b90a4266d97?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5efb3e750b90a4266d97)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5ef93e750b90a4266d91/download)
    [Logs](https://api.biosimulations.org/logs/677d5ef93e750b90a4266d91?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ef93e750b90a4266d91)

    HTTP response: 201| +|[01296-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01296-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5f01f8016f90e7cbd0d9/download)
    [Logs](https://api.biosimulations.org/logs/677d5f01f8016f90e7cbd0d9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f01f8016f90e7cbd0d9)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5efe3e750b90a4266da3/download)
    [Logs](https://api.biosimulations.org/logs/677d5efe3e750b90a4266da3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5efe3e750b90a4266da3)

    HTTP response: 201| +|[01297-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01297-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5f0667468f9f3fc5eab7/download)
    [Logs](https://api.biosimulations.org/logs/677d5f0667468f9f3fc5eab7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f0667468f9f3fc5eab7)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5f0467468f9f3fc5eaac/download)
    [Logs](https://api.biosimulations.org/logs/677d5f0467468f9f3fc5eaac?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f0467468f9f3fc5eaac)

    HTTP response: 201| +|[01298-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01298-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5f0bf8016f90e7cbd119/download)
    [Logs](https://api.biosimulations.org/logs/677d5f0bf8016f90e7cbd119?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f0bf8016f90e7cbd119)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5f093e750b90a4266dcb/download)
    [Logs](https://api.biosimulations.org/logs/677d5f093e750b90a4266dcb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f093e750b90a4266dcb)

    HTTP response: 201| +|[01299-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01299-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5f113e750b90a4266de2/download)
    [Logs](https://api.biosimulations.org/logs/677d5f113e750b90a4266de2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f113e750b90a4266de2)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5f0e3e750b90a4266ddf/download)
    [Logs](https://api.biosimulations.org/logs/677d5f0e3e750b90a4266ddf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f0e3e750b90a4266ddf)

    HTTP response: 201| +|[01300-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01300-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f1667468f9f3fc5eafa/download)
    [Logs](https://api.biosimulations.org/logs/677d5f1667468f9f3fc5eafa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f1667468f9f3fc5eafa)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f14f8016f90e7cbd137/download)
    [Logs](https://api.biosimulations.org/logs/677d5f14f8016f90e7cbd137?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f14f8016f90e7cbd137)

    HTTP response: 201| +|[01301-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01301-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f1b67468f9f3fc5eb03/download)
    [Logs](https://api.biosimulations.org/logs/677d5f1b67468f9f3fc5eb03?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f1b67468f9f3fc5eb03)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f19f8016f90e7cbd13e/download)
    [Logs](https://api.biosimulations.org/logs/677d5f19f8016f90e7cbd13e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f19f8016f90e7cbd13e)

    HTTP response: 201| +|[01302-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01302-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f203e750b90a4266e0b/download)
    [Logs](https://api.biosimulations.org/logs/677d5f203e750b90a4266e0b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f203e750b90a4266e0b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f1e3e750b90a4266e08/download)
    [Logs](https://api.biosimulations.org/logs/677d5f1e3e750b90a4266e08?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f1e3e750b90a4266e08)

    HTTP response: 201| +|[01303-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01303-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f25f8016f90e7cbd180/download)
    [Logs](https://api.biosimulations.org/logs/677d5f25f8016f90e7cbd180?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f25f8016f90e7cbd180)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f22f8016f90e7cbd16a/download)
    [Logs](https://api.biosimulations.org/logs/677d5f22f8016f90e7cbd16a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f22f8016f90e7cbd16a)

    HTTP response: 201| +|[01304-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01304-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f2a67468f9f3fc5eb4b/download)
    [Logs](https://api.biosimulations.org/logs/677d5f2a67468f9f3fc5eb4b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f2a67468f9f3fc5eb4b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f283e750b90a4266e2e/download)
    [Logs](https://api.biosimulations.org/logs/677d5f283e750b90a4266e2e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f283e750b90a4266e2e)

    HTTP response: 201| +|[01305-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01305-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f30f8016f90e7cbd1b0/download)
    [Logs](https://api.biosimulations.org/logs/677d5f30f8016f90e7cbd1b0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f30f8016f90e7cbd1b0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f2d3e750b90a4266e3c/download)
    [Logs](https://api.biosimulations.org/logs/677d5f2d3e750b90a4266e3c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f2d3e750b90a4266e3c)

    HTTP response: 201| +|[01306-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01306-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f3767468f9f3fc5eb84/download)
    [Logs](https://api.biosimulations.org/logs/677d5f3767468f9f3fc5eb84?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f3767468f9f3fc5eb84)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f3467468f9f3fc5eb6a/download)
    [Logs](https://api.biosimulations.org/logs/677d5f3467468f9f3fc5eb6a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f3467468f9f3fc5eb6a)

    HTTP response: 201| +|[01307-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01307-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f3cf8016f90e7cbd1e2/download)
    [Logs](https://api.biosimulations.org/logs/677d5f3cf8016f90e7cbd1e2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f3cf8016f90e7cbd1e2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f3a67468f9f3fc5eb8e/download)
    [Logs](https://api.biosimulations.org/logs/677d5f3a67468f9f3fc5eb8e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f3a67468f9f3fc5eb8e)

    HTTP response: 201| +|[01308-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01308-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f42f8016f90e7cbd1fa/download)
    [Logs](https://api.biosimulations.org/logs/677d5f42f8016f90e7cbd1fa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f42f8016f90e7cbd1fa)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f3ff8016f90e7cbd1e8/download)
    [Logs](https://api.biosimulations.org/logs/677d5f3ff8016f90e7cbd1e8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f3ff8016f90e7cbd1e8)

    HTTP response: 201| +|[01309-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01309-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f47f8016f90e7cbd206/download)
    [Logs](https://api.biosimulations.org/logs/677d5f47f8016f90e7cbd206?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f47f8016f90e7cbd206)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f453e750b90a4266e98/download)
    [Logs](https://api.biosimulations.org/logs/677d5f453e750b90a4266e98?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f453e750b90a4266e98)

    HTTP response: 201| +|[01310-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01310-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f4c67468f9f3fc5ebcf/download)
    [Logs](https://api.biosimulations.org/logs/677d5f4c67468f9f3fc5ebcf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f4c67468f9f3fc5ebcf)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f4af8016f90e7cbd216/download)
    [Logs](https://api.biosimulations.org/logs/677d5f4af8016f90e7cbd216?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f4af8016f90e7cbd216)

    HTTP response: 201| +|[01311-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01311-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f51f8016f90e7cbd231/download)
    [Logs](https://api.biosimulations.org/logs/677d5f51f8016f90e7cbd231?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f51f8016f90e7cbd231)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f4f67468f9f3fc5ebd8/download)
    [Logs](https://api.biosimulations.org/logs/677d5f4f67468f9f3fc5ebd8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f4f67468f9f3fc5ebd8)

    HTTP response: 201| +|[01312-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01312-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f56f8016f90e7cbd242/download)
    [Logs](https://api.biosimulations.org/logs/677d5f56f8016f90e7cbd242?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f56f8016f90e7cbd242)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f533e750b90a4266ec3/download)
    [Logs](https://api.biosimulations.org/logs/677d5f533e750b90a4266ec3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f533e750b90a4266ec3)

    HTTP response: 201| +|[01313-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01313-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f5bf8016f90e7cbd268/download)
    [Logs](https://api.biosimulations.org/logs/677d5f5bf8016f90e7cbd268?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f5bf8016f90e7cbd268)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f593e750b90a4266ef6/download)
    [Logs](https://api.biosimulations.org/logs/677d5f593e750b90a4266ef6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f593e750b90a4266ef6)

    HTTP response: 201| +|[01314-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01314-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f5f3e750b90a4266f13/download)
    [Logs](https://api.biosimulations.org/logs/677d5f5f3e750b90a4266f13?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f5f3e750b90a4266f13)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f5d3e750b90a4266f0b/download)
    [Logs](https://api.biosimulations.org/logs/677d5f5d3e750b90a4266f0b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f5d3e750b90a4266f0b)

    HTTP response: 201| +|[01315-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01315-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f64f8016f90e7cbd290/download)
    [Logs](https://api.biosimulations.org/logs/677d5f64f8016f90e7cbd290?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f64f8016f90e7cbd290)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f623e750b90a4266f23/download)
    [Logs](https://api.biosimulations.org/logs/677d5f623e750b90a4266f23?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f623e750b90a4266f23)

    HTTP response: 201| +|[01316-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01316-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f6a67468f9f3fc5ec72/download)
    [Logs](https://api.biosimulations.org/logs/677d5f6a67468f9f3fc5ec72?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f6a67468f9f3fc5ec72)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f6767468f9f3fc5ec53/download)
    [Logs](https://api.biosimulations.org/logs/677d5f6767468f9f3fc5ec53?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f6767468f9f3fc5ec53)

    HTTP response: 201| +|[01317-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01317-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f6f67468f9f3fc5ec88/download)
    [Logs](https://api.biosimulations.org/logs/677d5f6f67468f9f3fc5ec88?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f6f67468f9f3fc5ec88)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f6c3e750b90a4266f4a/download)
    [Logs](https://api.biosimulations.org/logs/677d5f6c3e750b90a4266f4a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f6c3e750b90a4266f4a)

    HTTP response: 201| +|[01318-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01318-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(p2, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d5f73f8016f90e7cbd2ce/download)
    [Logs](https://api.biosimulations.org/logs/677d5f73f8016f90e7cbd2ce?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f73f8016f90e7cbd2ce)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(p2, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5f7167468f9f3fc5ec8f/download)
    [Logs](https://api.biosimulations.org/logs/677d5f7167468f9f3fc5ec8f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f7167468f9f3fc5ec8f)

    HTTP response: 201| +|[01319-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01319-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(p2, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d5f783e750b90a4266f81/download)
    [Logs](https://api.biosimulations.org/logs/677d5f783e750b90a4266f81?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f783e750b90a4266f81)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(p2, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5f76f8016f90e7cbd2df/download)
    [Logs](https://api.biosimulations.org/logs/677d5f76f8016f90e7cbd2df?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f76f8016f90e7cbd2df)

    HTTP response: 201| +|[01320-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01320-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d5f7e67468f9f3fc5ecba/download)
    [Logs](https://api.biosimulations.org/logs/677d5f7e67468f9f3fc5ecba?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f7e67468f9f3fc5ecba)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5f7b67468f9f3fc5ecb2/download)
    [Logs](https://api.biosimulations.org/logs/677d5f7b67468f9f3fc5ecb2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f7b67468f9f3fc5ecb2)

    HTTP response: 201| +|[01321-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01321-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5f83f8016f90e7cbd321/download)
    [Logs](https://api.biosimulations.org/logs/677d5f83f8016f90e7cbd321?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f83f8016f90e7cbd321)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from p1 p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5f8067468f9f3fc5ecc8/download)
    [Logs](https://api.biosimulations.org/logs/677d5f8067468f9f3fc5ecc8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f8067468f9f3fc5ecc8)

    HTTP response: 201| +|[01322-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01322-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d5f87f8016f90e7cbd334/download)
    [Logs](https://api.biosimulations.org/logs/677d5f87f8016f90e7cbd334?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f87f8016f90e7cbd334)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from plus p1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d5f8567468f9f3fc5ecdc/download)
    [Logs](https://api.biosimulations.org/logs/677d5f8567468f9f3fc5ecdc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f8567468f9f3fc5ecdc)

    HTTP response: 201| +|[01323-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01323-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f8d67468f9f3fc5ecec/download)
    [Logs](https://api.biosimulations.org/logs/677d5f8d67468f9f3fc5ecec?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f8d67468f9f3fc5ecec)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f8a3e750b90a4266fd4/download)
    [Logs](https://api.biosimulations.org/logs/677d5f8a3e750b90a4266fd4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f8a3e750b90a4266fd4)

    HTTP response: 201| +|[01324-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01324-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f93f8016f90e7cbd35f/download)
    [Logs](https://api.biosimulations.org/logs/677d5f93f8016f90e7cbd35f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f93f8016f90e7cbd35f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f9067468f9f3fc5ecfb/download)
    [Logs](https://api.biosimulations.org/logs/677d5f9067468f9f3fc5ecfb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f9067468f9f3fc5ecfb)

    HTTP response: 201| +|[01325-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01325-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f97f8016f90e7cbd36e/download)
    [Logs](https://api.biosimulations.org/logs/677d5f97f8016f90e7cbd36e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f97f8016f90e7cbd36e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f953e750b90a4267017/download)
    [Logs](https://api.biosimulations.org/logs/677d5f953e750b90a4267017?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f953e750b90a4267017)

    HTTP response: 201| +|[01326-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01326-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5f9d3e750b90a426703c/download)
    [Logs](https://api.biosimulations.org/logs/677d5f9d3e750b90a426703c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f9d3e750b90a426703c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f9a67468f9f3fc5ed26/download)
    [Logs](https://api.biosimulations.org/logs/677d5f9a67468f9f3fc5ed26?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f9a67468f9f3fc5ed26)

    HTTP response: 201| +|[01327-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01327-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5fa167468f9f3fc5ed4a/download)
    [Logs](https://api.biosimulations.org/logs/677d5fa167468f9f3fc5ed4a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fa167468f9f3fc5ed4a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5f9ff8016f90e7cbd38a/download)
    [Logs](https://api.biosimulations.org/logs/677d5f9ff8016f90e7cbd38a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5f9ff8016f90e7cbd38a)

    HTTP response: 201| +|[01328-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01328-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5fa6f8016f90e7cbd3b0/download)
    [Logs](https://api.biosimulations.org/logs/677d5fa6f8016f90e7cbd3b0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fa6f8016f90e7cbd3b0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5fa43e750b90a4267057/download)
    [Logs](https://api.biosimulations.org/logs/677d5fa43e750b90a4267057?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fa43e750b90a4267057)

    HTTP response: 201| +|[01329-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01329-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5fab67468f9f3fc5ed73/download)
    [Logs](https://api.biosimulations.org/logs/677d5fab67468f9f3fc5ed73?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fab67468f9f3fc5ed73)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5fa967468f9f3fc5ed6d/download)
    [Logs](https://api.biosimulations.org/logs/677d5fa967468f9f3fc5ed6d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fa967468f9f3fc5ed6d)

    HTTP response: 201| +|[01330-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01330-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5fb067468f9f3fc5ed82/download)
    [Logs](https://api.biosimulations.org/logs/677d5fb067468f9f3fc5ed82?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fb067468f9f3fc5ed82)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5faef8016f90e7cbd3d2/download)
    [Logs](https://api.biosimulations.org/logs/677d5faef8016f90e7cbd3d2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5faef8016f90e7cbd3d2)

    HTTP response: 201| +|[01331-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01331-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5fb5f8016f90e7cbd3dd/download)
    [Logs](https://api.biosimulations.org/logs/677d5fb5f8016f90e7cbd3dd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fb5f8016f90e7cbd3dd)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5fb33e750b90a426708d/download)
    [Logs](https://api.biosimulations.org/logs/677d5fb33e750b90a426708d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fb33e750b90a426708d)

    HTTP response: 201| +|[01332-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01332-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5fba67468f9f3fc5edac/download)
    [Logs](https://api.biosimulations.org/logs/677d5fba67468f9f3fc5edac?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fba67468f9f3fc5edac)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5fb83e750b90a42670b4/download)
    [Logs](https://api.biosimulations.org/logs/677d5fb83e750b90a42670b4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fb83e750b90a42670b4)

    HTTP response: 201| +|[01333-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01333-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5fbff8016f90e7cbd419/download)
    [Logs](https://api.biosimulations.org/logs/677d5fbff8016f90e7cbd419?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fbff8016f90e7cbd419)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5fbd3e750b90a42670d1/download)
    [Logs](https://api.biosimulations.org/logs/677d5fbd3e750b90a42670d1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fbd3e750b90a42670d1)

    HTTP response: 201| +|[01334-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01334-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5fc467468f9f3fc5edd8/download)
    [Logs](https://api.biosimulations.org/logs/677d5fc467468f9f3fc5edd8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fc467468f9f3fc5edd8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5fc267468f9f3fc5edd1/download)
    [Logs](https://api.biosimulations.org/logs/677d5fc267468f9f3fc5edd1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fc267468f9f3fc5edd1)

    HTTP response: 201| +|[01335-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01335-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5fca67468f9f3fc5edf0/download)
    [Logs](https://api.biosimulations.org/logs/677d5fca67468f9f3fc5edf0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fca67468f9f3fc5edf0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5fc73e750b90a42670f6/download)
    [Logs](https://api.biosimulations.org/logs/677d5fc73e750b90a42670f6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fc73e750b90a42670f6)

    HTTP response: 201| +|[01336-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01336-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5fd1f8016f90e7cbd44f/download)
    [Logs](https://api.biosimulations.org/logs/677d5fd1f8016f90e7cbd44f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fd1f8016f90e7cbd44f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5fce3e750b90a426711d/download)
    [Logs](https://api.biosimulations.org/logs/677d5fce3e750b90a426711d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fce3e750b90a426711d)

    HTTP response: 201| +|[01337-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01337-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5fd8f8016f90e7cbd46a/download)
    [Logs](https://api.biosimulations.org/logs/677d5fd8f8016f90e7cbd46a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fd8f8016f90e7cbd46a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5fd43e750b90a4267135/download)
    [Logs](https://api.biosimulations.org/logs/677d5fd43e750b90a4267135?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fd43e750b90a4267135)

    HTTP response: 201| +|[01338-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01338-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5fde67468f9f3fc5ee45/download)
    [Logs](https://api.biosimulations.org/logs/677d5fde67468f9f3fc5ee45?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fde67468f9f3fc5ee45)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5fdb67468f9f3fc5ee42/download)
    [Logs](https://api.biosimulations.org/logs/677d5fdb67468f9f3fc5ee42?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fdb67468f9f3fc5ee42)

    HTTP response: 201| +|[01339-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01339-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5fe5f8016f90e7cbd494/download)
    [Logs](https://api.biosimulations.org/logs/677d5fe5f8016f90e7cbd494?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fe5f8016f90e7cbd494)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5fe167468f9f3fc5ee53/download)
    [Logs](https://api.biosimulations.org/logs/677d5fe167468f9f3fc5ee53?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fe167468f9f3fc5ee53)

    HTTP response: 201| +|[01340-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01340-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5fec67468f9f3fc5ee6f/download)
    [Logs](https://api.biosimulations.org/logs/677d5fec67468f9f3fc5ee6f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fec67468f9f3fc5ee6f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5fe83e750b90a4267175/download)
    [Logs](https://api.biosimulations.org/logs/677d5fe83e750b90a4267175?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fe83e750b90a4267175)

    HTTP response: 201| +|[01341-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01341-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ff267468f9f3fc5ee86/download)
    [Logs](https://api.biosimulations.org/logs/677d5ff267468f9f3fc5ee86?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ff267468f9f3fc5ee86)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ff067468f9f3fc5ee7a/download)
    [Logs](https://api.biosimulations.org/logs/677d5ff067468f9f3fc5ee7a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ff067468f9f3fc5ee7a)

    HTTP response: 201| +|[01342-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01342-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5ff93e750b90a426719e/download)
    [Logs](https://api.biosimulations.org/logs/677d5ff93e750b90a426719e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ff93e750b90a426719e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ff667468f9f3fc5ee93/download)
    [Logs](https://api.biosimulations.org/logs/677d5ff667468f9f3fc5ee93?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ff667468f9f3fc5ee93)

    HTTP response: 201| +|[01343-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01343-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d5fff3e750b90a42671b3/download)
    [Logs](https://api.biosimulations.org/logs/677d5fff3e750b90a42671b3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5fff3e750b90a42671b3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d5ffd3e750b90a42671af/download)
    [Logs](https://api.biosimulations.org/logs/677d5ffd3e750b90a42671af?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d5ffd3e750b90a42671af)

    HTTP response: 201| +|[01344-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01344-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d6005f8016f90e7cbd50e/download)
    [Logs](https://api.biosimulations.org/logs/677d6005f8016f90e7cbd50e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6005f8016f90e7cbd50e)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp615993 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d600267468f9f3fc5eeaa/download)
    [Logs](https://api.biosimulations.org/logs/677d600267468f9f3fc5eeaa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d600267468f9f3fc5eeaa)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp304672 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01345-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01345-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d600af8016f90e7cbd51f/download)
    [Logs](https://api.biosimulations.org/logs/677d600af8016f90e7cbd51f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d600af8016f90e7cbd51f)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp192932 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d600867468f9f3fc5eec5/download)
    [Logs](https://api.biosimulations.org/logs/677d600867468f9f3fc5eec5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d600867468f9f3fc5eec5)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp151201 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01346-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01346-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d60103e750b90a42671f1/download)
    [Logs](https://api.biosimulations.org/logs/677d60103e750b90a42671f1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60103e750b90a42671f1)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp711226 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d600df8016f90e7cbd526/download)
    [Logs](https://api.biosimulations.org/logs/677d600df8016f90e7cbd526?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d600df8016f90e7cbd526)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp466888 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01347-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01347-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d6017f8016f90e7cbd543/download)
    [Logs](https://api.biosimulations.org/logs/677d6017f8016f90e7cbd543?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6017f8016f90e7cbd543)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp312383 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d60143e750b90a42671ff/download)
    [Logs](https://api.biosimulations.org/logs/677d60143e750b90a42671ff?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60143e750b90a42671ff)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp10327 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01348-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01348-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d601d3e750b90a426721e/download)
    [Logs](https://api.biosimulations.org/logs/677d601d3e750b90a426721e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d601d3e750b90a426721e)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp579384 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d601af8016f90e7cbd550/download)
    [Logs](https://api.biosimulations.org/logs/677d601af8016f90e7cbd550?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d601af8016f90e7cbd550)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp524279 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01349-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01349-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d602267468f9f3fc5ef3b/download)
    [Logs](https://api.biosimulations.org/logs/677d602267468f9f3fc5ef3b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d602267468f9f3fc5ef3b)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp366639 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6020f8016f90e7cbd563/download)
    [Logs](https://api.biosimulations.org/logs/677d6020f8016f90e7cbd563?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6020f8016f90e7cbd563)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp782151 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01350-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01350-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = A__x - J1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d602a3e750b90a426723f/download)
    [Logs](https://api.biosimulations.org/logs/677d602a3e750b90a426723f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d602a3e750b90a426723f)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp377540 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6026f8016f90e7cbd579/download)
    [Logs](https://api.biosimulations.org/logs/677d6026f8016f90e7cbd579?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6026f8016f90e7cbd579)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp995973 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01351-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01351-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d603167468f9f3fc5ef5f/download)
    [Logs](https://api.biosimulations.org/logs/677d603167468f9f3fc5ef5f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d603167468f9f3fc5ef5f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d602ef8016f90e7cbd59c/download)
    [Logs](https://api.biosimulations.org/logs/677d602ef8016f90e7cbd59c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d602ef8016f90e7cbd59c)

    HTTP response: 201| +|[01352-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01352-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d60373e750b90a4267277/download)
    [Logs](https://api.biosimulations.org/logs/677d60373e750b90a4267277?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60373e750b90a4267277)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp15525 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6034f8016f90e7cbd5b2/download)
    [Logs](https://api.biosimulations.org/logs/677d6034f8016f90e7cbd5b2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6034f8016f90e7cbd5b2)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp374720 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01353-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01353-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d603d67468f9f3fc5ef84/download)
    [Logs](https://api.biosimulations.org/logs/677d603d67468f9f3fc5ef84?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d603d67468f9f3fc5ef84)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp478758 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d603af8016f90e7cbd5b9/download)
    [Logs](https://api.biosimulations.org/logs/677d603af8016f90e7cbd5b9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d603af8016f90e7cbd5b9)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp736237 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01354-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01354-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d6043f8016f90e7cbd5dd/download)
    [Logs](https://api.biosimulations.org/logs/677d6043f8016f90e7cbd5dd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6043f8016f90e7cbd5dd)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp351001 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6040f8016f90e7cbd5d1/download)
    [Logs](https://api.biosimulations.org/logs/677d6040f8016f90e7cbd5d1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6040f8016f90e7cbd5d1)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp6137 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01355-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01355-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d60493e750b90a42672ae/download)
    [Logs](https://api.biosimulations.org/logs/677d60493e750b90a42672ae?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60493e750b90a42672ae)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp468501 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d60463e750b90a42672a7/download)
    [Logs](https://api.biosimulations.org/logs/677d60463e750b90a42672a7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60463e750b90a42672a7)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp99170 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01356-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01356-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d604ff8016f90e7cbd603/download)
    [Logs](https://api.biosimulations.org/logs/677d604ff8016f90e7cbd603?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d604ff8016f90e7cbd603)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp982336 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d604cf8016f90e7cbd5f1/download)
    [Logs](https://api.biosimulations.org/logs/677d604cf8016f90e7cbd5f1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d604cf8016f90e7cbd5f1)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp47303 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01357-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01357-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d6054f8016f90e7cbd60e/download)
    [Logs](https://api.biosimulations.org/logs/677d6054f8016f90e7cbd60e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6054f8016f90e7cbd60e)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp234442 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d60523e750b90a42672d5/download)
    [Logs](https://api.biosimulations.org/logs/677d60523e750b90a42672d5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60523e750b90a42672d5)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp338526 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01358-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01358-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d605b3e750b90a42672ed/download)
    [Logs](https://api.biosimulations.org/logs/677d605b3e750b90a42672ed?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d605b3e750b90a42672ed)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp610365 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6058f8016f90e7cbd621/download)
    [Logs](https://api.biosimulations.org/logs/677d6058f8016f90e7cbd621?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6058f8016f90e7cbd621)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp521463 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01359-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01359-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = A__x - J1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d606167468f9f3fc5f01f/download)
    [Logs](https://api.biosimulations.org/logs/677d606167468f9f3fc5f01f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d606167468f9f3fc5f01f)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp655267 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d605e67468f9f3fc5f017/download)
    [Logs](https://api.biosimulations.org/logs/677d605e67468f9f3fc5f017?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d605e67468f9f3fc5f017)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp373252 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01360-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01360-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d606867468f9f3fc5f03f/download)
    [Logs](https://api.biosimulations.org/logs/677d606867468f9f3fc5f03f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d606867468f9f3fc5f03f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d606567468f9f3fc5f02f/download)
    [Logs](https://api.biosimulations.org/logs/677d606567468f9f3fc5f02f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d606567468f9f3fc5f02f)

    HTTP response: 201| +|[01361-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01361-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d606d3e750b90a426732a/download)
    [Logs](https://api.biosimulations.org/logs/677d606d3e750b90a426732a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d606d3e750b90a426732a)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp509570 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d606bf8016f90e7cbd663/download)
    [Logs](https://api.biosimulations.org/logs/677d606bf8016f90e7cbd663?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d606bf8016f90e7cbd663)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp957377 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01362-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01362-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d607467468f9f3fc5f06d/download)
    [Logs](https://api.biosimulations.org/logs/677d607467468f9f3fc5f06d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d607467468f9f3fc5f06d)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp115450 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6071f8016f90e7cbd675/download)
    [Logs](https://api.biosimulations.org/logs/677d6071f8016f90e7cbd675?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6071f8016f90e7cbd675)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp430547 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01363-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01363-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d607a67468f9f3fc5f07a/download)
    [Logs](https://api.biosimulations.org/logs/677d607a67468f9f3fc5f07a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d607a67468f9f3fc5f07a)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp272076 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6077f8016f90e7cbd68c/download)
    [Logs](https://api.biosimulations.org/logs/677d6077f8016f90e7cbd68c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6077f8016f90e7cbd68c)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp735862 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01364-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01364-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d6080f8016f90e7cbd6ac/download)
    [Logs](https://api.biosimulations.org/logs/677d6080f8016f90e7cbd6ac?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6080f8016f90e7cbd6ac)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp961226 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d607df8016f90e7cbd698/download)
    [Logs](https://api.biosimulations.org/logs/677d607df8016f90e7cbd698?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d607df8016f90e7cbd698)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp644784 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01365-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01365-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d60873e750b90a426737d/download)
    [Logs](https://api.biosimulations.org/logs/677d60873e750b90a426737d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60873e750b90a426737d)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp700820 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d608467468f9f3fc5f098/download)
    [Logs](https://api.biosimulations.org/logs/677d608467468f9f3fc5f098?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d608467468f9f3fc5f098)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp508175 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01366-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01366-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d608d3e750b90a4267397/download)
    [Logs](https://api.biosimulations.org/logs/677d608d3e750b90a4267397?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d608d3e750b90a4267397)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp883797 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d608bf8016f90e7cbd6d0/download)
    [Logs](https://api.biosimulations.org/logs/677d608bf8016f90e7cbd6d0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d608bf8016f90e7cbd6d0)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp930341 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01367-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01367-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d6093f8016f90e7cbd6f4/download)
    [Logs](https://api.biosimulations.org/logs/677d6093f8016f90e7cbd6f4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6093f8016f90e7cbd6f4)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp407098 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d609167468f9f3fc5f0c5/download)
    [Logs](https://api.biosimulations.org/logs/677d609167468f9f3fc5f0c5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d609167468f9f3fc5f0c5)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp985981 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01368-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01368-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = A__x - J1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d609c67468f9f3fc5f0e5/download)
    [Logs](https://api.biosimulations.org/logs/677d609c67468f9f3fc5f0e5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d609c67468f9f3fc5f0e5)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp67091 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6097f8016f90e7cbd701/download)
    [Logs](https://api.biosimulations.org/logs/677d6097f8016f90e7cbd701?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6097f8016f90e7cbd701)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp409606 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01369-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01369-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d60a467468f9f3fc5f103/download)
    [Logs](https://api.biosimulations.org/logs/677d60a467468f9f3fc5f103?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60a467468f9f3fc5f103)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d60a03e750b90a42673d1/download)
    [Logs](https://api.biosimulations.org/logs/677d60a03e750b90a42673d1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60a03e750b90a42673d1)

    HTTP response: 201| +|[01370-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01370-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d60aa3e750b90a42673f0/download)
    [Logs](https://api.biosimulations.org/logs/677d60aa3e750b90a42673f0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60aa3e750b90a42673f0)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp843389 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d60a8f8016f90e7cbd73f/download)
    [Logs](https://api.biosimulations.org/logs/677d60a8f8016f90e7cbd73f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60a8f8016f90e7cbd73f)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp979150 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01371-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01371-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d60b03e750b90a42673fa/download)
    [Logs](https://api.biosimulations.org/logs/677d60b03e750b90a42673fa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60b03e750b90a42673fa)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp207772 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d60aef8016f90e7cbd74e/download)
    [Logs](https://api.biosimulations.org/logs/677d60aef8016f90e7cbd74e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60aef8016f90e7cbd74e)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp339627 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01372-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01372-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d60b63e750b90a4267412/download)
    [Logs](https://api.biosimulations.org/logs/677d60b63e750b90a4267412?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60b63e750b90a4267412)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp378983 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d60b3f8016f90e7cbd759/download)
    [Logs](https://api.biosimulations.org/logs/677d60b3f8016f90e7cbd759?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60b3f8016f90e7cbd759)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp894402 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01373-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01373-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d60bbf8016f90e7cbd774/download)
    [Logs](https://api.biosimulations.org/logs/677d60bbf8016f90e7cbd774?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60bbf8016f90e7cbd774)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp386012 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d60b8f8016f90e7cbd76d/download)
    [Logs](https://api.biosimulations.org/logs/677d60b8f8016f90e7cbd76d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60b8f8016f90e7cbd76d)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp391635 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01374-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01374-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d60c1f8016f90e7cbd786/download)
    [Logs](https://api.biosimulations.org/logs/677d60c1f8016f90e7cbd786?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60c1f8016f90e7cbd786)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp203789 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d60be67468f9f3fc5f154/download)
    [Logs](https://api.biosimulations.org/logs/677d60be67468f9f3fc5f154?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60be67468f9f3fc5f154)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp538906 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01375-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01375-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d60c83e750b90a426744f/download)
    [Logs](https://api.biosimulations.org/logs/677d60c83e750b90a426744f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60c83e750b90a426744f)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp474710 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d60c5f8016f90e7cbd797/download)
    [Logs](https://api.biosimulations.org/logs/677d60c5f8016f90e7cbd797?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60c5f8016f90e7cbd797)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp530373 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01376-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01376-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d60cc3e750b90a426745c/download)
    [Logs](https://api.biosimulations.org/logs/677d60cc3e750b90a426745c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60cc3e750b90a426745c)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp70009 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d60ca3e750b90a4267458/download)
    [Logs](https://api.biosimulations.org/logs/677d60ca3e750b90a4267458?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60ca3e750b90a4267458)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp594956 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01377-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01377-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = A__x - J1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677e71e3f8016f90e7cc06b9/download)
    [Logs](https://api.biosimulations.org/logs/677e71e3f8016f90e7cc06b9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677e71e3f8016f90e7cc06b9)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp470683 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677e71e13e750b90a426a2b5/download)
    [Logs](https://api.biosimulations.org/logs/677e71e13e750b90a426a2b5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677e71e13e750b90a426a2b5)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp3437 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01378-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01378-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d60d7f8016f90e7cbd7dc/download)
    [Logs](https://api.biosimulations.org/logs/677d60d7f8016f90e7cbd7dc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60d7f8016f90e7cbd7dc)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d60d43e750b90a4267478/download)
    [Logs](https://api.biosimulations.org/logs/677d60d43e750b90a4267478?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60d43e750b90a4267478)

    HTTP response: 201| +|[01379-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01379-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d60dc3e750b90a426749a/download)
    [Logs](https://api.biosimulations.org/logs/677d60dc3e750b90a426749a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60dc3e750b90a426749a)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp759523 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d60da3e750b90a4267495/download)
    [Logs](https://api.biosimulations.org/logs/677d60da3e750b90a4267495?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60da3e750b90a4267495)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp955010 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01380-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01380-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d60e267468f9f3fc5f1bb/download)
    [Logs](https://api.biosimulations.org/logs/677d60e267468f9f3fc5f1bb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60e267468f9f3fc5f1bb)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp110477 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d60df3e750b90a42674ad/download)
    [Logs](https://api.biosimulations.org/logs/677d60df3e750b90a42674ad?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60df3e750b90a42674ad)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp211801 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01381-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01381-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d60e767468f9f3fc5f1cd/download)
    [Logs](https://api.biosimulations.org/logs/677d60e767468f9f3fc5f1cd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60e767468f9f3fc5f1cd)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp85539 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d60e567468f9f3fc5f1c3/download)
    [Logs](https://api.biosimulations.org/logs/677d60e567468f9f3fc5f1c3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60e567468f9f3fc5f1c3)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp414416 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01382-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01382-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d60ed67468f9f3fc5f1e8/download)
    [Logs](https://api.biosimulations.org/logs/677d60ed67468f9f3fc5f1e8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60ed67468f9f3fc5f1e8)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp328330 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d60ea3e750b90a42674d0/download)
    [Logs](https://api.biosimulations.org/logs/677d60ea3e750b90a42674d0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60ea3e750b90a42674d0)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp410462 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01383-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01383-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d60f23e750b90a42674fd/download)
    [Logs](https://api.biosimulations.org/logs/677d60f23e750b90a42674fd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60f23e750b90a42674fd)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp666819 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d60ef3e750b90a42674eb/download)
    [Logs](https://api.biosimulations.org/logs/677d60ef3e750b90a42674eb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60ef3e750b90a42674eb)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp773230 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01384-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01384-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d60f767468f9f3fc5f212/download)
    [Logs](https://api.biosimulations.org/logs/677d60f767468f9f3fc5f212?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60f767468f9f3fc5f212)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp682502 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d60f53e750b90a4267504/download)
    [Logs](https://api.biosimulations.org/logs/677d60f53e750b90a4267504?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60f53e750b90a4267504)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp180676 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01385-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01385-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d60fd67468f9f3fc5f221/download)
    [Logs](https://api.biosimulations.org/logs/677d60fd67468f9f3fc5f221?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60fd67468f9f3fc5f221)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp541135 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d60fa67468f9f3fc5f217/download)
    [Logs](https://api.biosimulations.org/logs/677d60fa67468f9f3fc5f217?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d60fa67468f9f3fc5f217)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp14025 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01386-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01386-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = A__x - J1_sr' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d61023e750b90a4267536/download)
    [Logs](https://api.biosimulations.org/logs/677d61023e750b90a4267536?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61023e750b90a4267536)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp608433 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d610067468f9f3fc5f234/download)
    [Logs](https://api.biosimulations.org/logs/677d610067468f9f3fc5f234?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d610067468f9f3fc5f234)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp740358 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01387-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01387-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d610767468f9f3fc5f242/download)
    [Logs](https://api.biosimulations.org/logs/677d610767468f9f3fc5f242?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d610767468f9f3fc5f242)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d61053e750b90a4267541/download)
    [Logs](https://api.biosimulations.org/logs/677d61053e750b90a4267541?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61053e750b90a4267541)

    HTTP response: 201| +|[01388-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01388-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d610c67468f9f3fc5f26d/download)
    [Logs](https://api.biosimulations.org/logs/677d610c67468f9f3fc5f26d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d610c67468f9f3fc5f26d)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp842568 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d610a67468f9f3fc5f251/download)
    [Logs](https://api.biosimulations.org/logs/677d610a67468f9f3fc5f251?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d610a67468f9f3fc5f251)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp391662 is invalid. - Data generator A__x_1 is invalid. - Variable A__x is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='A__x'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01389-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01389-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d61113e750b90a4267579/download)
    [Logs](https://api.biosimulations.org/logs/677d61113e750b90a4267579?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61113e750b90a4267579)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d610f3e750b90a4267563/download)
    [Logs](https://api.biosimulations.org/logs/677d610f3e750b90a4267563?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d610f3e750b90a4267563)

    HTTP response: 201| +|[01390-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01390-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d61163e750b90a426758b/download)
    [Logs](https://api.biosimulations.org/logs/677d61163e750b90a426758b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61163e750b90a426758b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6114f8016f90e7cbd8b3/download)
    [Logs](https://api.biosimulations.org/logs/677d6114f8016f90e7cbd8b3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6114f8016f90e7cbd8b3)

    HTTP response: 201| +|[01391-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01391-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d611cf8016f90e7cbd8d3/download)
    [Logs](https://api.biosimulations.org/logs/677d611cf8016f90e7cbd8d3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d611cf8016f90e7cbd8d3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d61193e750b90a4267594/download)
    [Logs](https://api.biosimulations.org/logs/677d61193e750b90a4267594?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61193e750b90a4267594)

    HTTP response: 201| +|[01392-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01392-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d61203e750b90a42675b1/download)
    [Logs](https://api.biosimulations.org/logs/677d61203e750b90a42675b1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61203e750b90a42675b1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d611e67468f9f3fc5f2b1/download)
    [Logs](https://api.biosimulations.org/logs/677d611e67468f9f3fc5f2b1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d611e67468f9f3fc5f2b1)

    HTTP response: 201| +|[01393-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01393-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6125f8016f90e7cbd8f0/download)
    [Logs](https://api.biosimulations.org/logs/677d6125f8016f90e7cbd8f0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6125f8016f90e7cbd8f0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d61233e750b90a42675bb/download)
    [Logs](https://api.biosimulations.org/logs/677d61233e750b90a42675bb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61233e750b90a42675bb)

    HTTP response: 201| +|[01394-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01394-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d612bf8016f90e7cbd901/download)
    [Logs](https://api.biosimulations.org/logs/677d612bf8016f90e7cbd901?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d612bf8016f90e7cbd901)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d612867468f9f3fc5f2d0/download)
    [Logs](https://api.biosimulations.org/logs/677d612867468f9f3fc5f2d0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d612867468f9f3fc5f2d0)

    HTTP response: 201| +|[01395-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01395-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d613067468f9f3fc5f2f7/download)
    [Logs](https://api.biosimulations.org/logs/677d613067468f9f3fc5f2f7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d613067468f9f3fc5f2f7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d612d3e750b90a42675de/download)
    [Logs](https://api.biosimulations.org/logs/677d612d3e750b90a42675de?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d612d3e750b90a42675de)

    HTTP response: 201| +|[01396-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01396-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d613667468f9f3fc5f318/download)
    [Logs](https://api.biosimulations.org/logs/677d613667468f9f3fc5f318?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d613667468f9f3fc5f318)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6133f8016f90e7cbd921/download)
    [Logs](https://api.biosimulations.org/logs/677d6133f8016f90e7cbd921?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6133f8016f90e7cbd921)

    HTTP response: 201| +|[01397-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01397-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d613b67468f9f3fc5f328/download)
    [Logs](https://api.biosimulations.org/logs/677d613b67468f9f3fc5f328?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d613b67468f9f3fc5f328)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d61393e750b90a426760e/download)
    [Logs](https://api.biosimulations.org/logs/677d61393e750b90a426760e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61393e750b90a426760e)

    HTTP response: 201| +|[01398-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01398-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d61413e750b90a4267630/download)
    [Logs](https://api.biosimulations.org/logs/677d61413e750b90a4267630?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61413e750b90a4267630)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d613e3e750b90a4267623/download)
    [Logs](https://api.biosimulations.org/logs/677d613e3e750b90a4267623?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d613e3e750b90a4267623)

    HTTP response: 201| +|[01399-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01399-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6146f8016f90e7cbd976/download)
    [Logs](https://api.biosimulations.org/logs/677d6146f8016f90e7cbd976?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6146f8016f90e7cbd976)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6143f8016f90e7cbd971/download)
    [Logs](https://api.biosimulations.org/logs/677d6143f8016f90e7cbd971?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6143f8016f90e7cbd971)

    HTTP response: 201| +|[01400-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01400-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(rateOf(S1), 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d614bf8016f90e7cbd992/download)
    [Logs](https://api.biosimulations.org/logs/677d614bf8016f90e7cbd992?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d614bf8016f90e7cbd992)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d614967468f9f3fc5f35b/download)
    [Logs](https://api.biosimulations.org/logs/677d614967468f9f3fc5f35b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d614967468f9f3fc5f35b)

    HTTP response: 201| +|[01401-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01401-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(rateOf(S1), 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d615067468f9f3fc5f378/download)
    [Logs](https://api.biosimulations.org/logs/677d615067468f9f3fc5f378?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d615067468f9f3fc5f378)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d614ef8016f90e7cbd99d/download)
    [Logs](https://api.biosimulations.org/logs/677d614ef8016f90e7cbd99d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d614ef8016f90e7cbd99d)

    HTTP response: 201| +|[01402-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01402-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d615567468f9f3fc5f388/download)
    [Logs](https://api.biosimulations.org/logs/677d615567468f9f3fc5f388?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d615567468f9f3fc5f388)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d6152f8016f90e7cbd9bb/download)
    [Logs](https://api.biosimulations.org/logs/677d6152f8016f90e7cbd9bb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6152f8016f90e7cbd9bb)

    HTTP response: 201| +|[01403-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01403-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(rateOf(S1), 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d615a67468f9f3fc5f397/download)
    [Logs](https://api.biosimulations.org/logs/677d615a67468f9f3fc5f397?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d615a67468f9f3fc5f397)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d615867468f9f3fc5f394/download)
    [Logs](https://api.biosimulations.org/logs/677d615867468f9f3fc5f394?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d615867468f9f3fc5f394)

    HTTP response: 201| +|[01404-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01404-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d615f3e750b90a42676a3/download)
    [Logs](https://api.biosimulations.org/logs/677d615f3e750b90a42676a3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d615f3e750b90a42676a3)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d615d67468f9f3fc5f3b4/download)
    [Logs](https://api.biosimulations.org/logs/677d615d67468f9f3fc5f3b4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d615d67468f9f3fc5f3b4)

    HTTP response: 201| +|[01405-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01405-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d6165f8016f90e7cbda03/download)
    [Logs](https://api.biosimulations.org/logs/677d6165f8016f90e7cbda03?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6165f8016f90e7cbda03)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d61623e750b90a42676b0/download)
    [Logs](https://api.biosimulations.org/logs/677d61623e750b90a42676b0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61623e750b90a42676b0)

    HTTP response: 201| +|[01406-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01406-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(rateOf(S1), 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d616af8016f90e7cbda15/download)
    [Logs](https://api.biosimulations.org/logs/677d616af8016f90e7cbda15?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d616af8016f90e7cbda15)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d61673e750b90a42676c5/download)
    [Logs](https://api.biosimulations.org/logs/677d61673e750b90a42676c5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61673e750b90a42676c5)

    HTTP response: 201| +|[01407-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01407-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d616f67468f9f3fc5f417/download)
    [Logs](https://api.biosimulations.org/logs/677d616f67468f9f3fc5f417?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d616f67468f9f3fc5f417)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d616c3e750b90a42676d2/download)
    [Logs](https://api.biosimulations.org/logs/677d616c3e750b90a42676d2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d616c3e750b90a42676d2)

    HTTP response: 201| +|[01408-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01408-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d617467468f9f3fc5f431/download)
    [Logs](https://api.biosimulations.org/logs/677d617467468f9f3fc5f431?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d617467468f9f3fc5f431)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d617167468f9f3fc5f41c/download)
    [Logs](https://api.biosimulations.org/logs/677d617167468f9f3fc5f41c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d617167468f9f3fc5f41c)

    HTTP response: 201| +|[01409-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01409-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(rateOf(S1), 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d617967468f9f3fc5f44c/download)
    [Logs](https://api.biosimulations.org/logs/677d617967468f9f3fc5f44c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d617967468f9f3fc5f44c)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d6177f8016f90e7cbda41/download)
    [Logs](https://api.biosimulations.org/logs/677d6177f8016f90e7cbda41?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6177f8016f90e7cbda41)

    HTTP response: 201| +|[01410-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01410-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d618167468f9f3fc5f46b/download)
    [Logs](https://api.biosimulations.org/logs/677d618167468f9f3fc5f46b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d618167468f9f3fc5f46b)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d617d67468f9f3fc5f455/download)
    [Logs](https://api.biosimulations.org/logs/677d617d67468f9f3fc5f455?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d617d67468f9f3fc5f455)

    HTTP response: 201| +|[01411-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01411-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(addtwo(S1, S2), 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6187f8016f90e7cbda81/download)
    [Logs](https://api.biosimulations.org/logs/677d6187f8016f90e7cbda81?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6187f8016f90e7cbda81)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(addtwo(S1, S2), 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d6184f8016f90e7cbda62/download)
    [Logs](https://api.biosimulations.org/logs/677d6184f8016f90e7cbda62?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6184f8016f90e7cbda62)

    HTTP response: 201| +|[01412-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01412-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(addtwo(S1, S2), 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d618c67468f9f3fc5f484/download)
    [Logs](https://api.biosimulations.org/logs/677d618c67468f9f3fc5f484?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d618c67468f9f3fc5f484)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(addtwo(S1, S2), 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d618967468f9f3fc5f480/download)
    [Logs](https://api.biosimulations.org/logs/677d618967468f9f3fc5f480?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d618967468f9f3fc5f480)

    HTTP response: 201| +|[01413-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01413-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(S1, addtwo(0.5, 0.5))' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d61913e750b90a426776c/download)
    [Logs](https://api.biosimulations.org/logs/677d61913e750b90a426776c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61913e750b90a426776c)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(S1, addtwo(0.5, 0.5))' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d618f3e750b90a4267769/download)
    [Logs](https://api.biosimulations.org/logs/677d618f3e750b90a4267769?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d618f3e750b90a4267769)

    HTTP response: 201| +|[01414-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01414-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(P1, k)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d619667468f9f3fc5f4af/download)
    [Logs](https://api.biosimulations.org/logs/677d619667468f9f3fc5f4af?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d619667468f9f3fc5f4af)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(P1, k)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d61933e750b90a4267778/download)
    [Logs](https://api.biosimulations.org/logs/677d61933e750b90a4267778?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61933e750b90a4267778)

    HTTP response: 201| +|[01415-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01415-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(P1, k)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d619bf8016f90e7cbdac2/download)
    [Logs](https://api.biosimulations.org/logs/677d619bf8016f90e7cbdac2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d619bf8016f90e7cbdac2)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(P1, k)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d61993e750b90a4267791/download)
    [Logs](https://api.biosimulations.org/logs/677d61993e750b90a4267791?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61993e750b90a4267791)

    HTTP response: 201| +|[01416-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01416-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d61a167468f9f3fc5f4e7/download)
    [Logs](https://api.biosimulations.org/logs/677d61a167468f9f3fc5f4e7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61a167468f9f3fc5f4e7)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d619ef8016f90e7cbdad0/download)
    [Logs](https://api.biosimulations.org/logs/677d619ef8016f90e7cbdad0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d619ef8016f90e7cbdad0)

    HTTP response: 201| +|[01417-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01417-sbml-l3v2.xml)|pass|FAIL|pass|
    delay Unable to support delay differential equations. The function 'delay(S1, S1_stoich)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d61a767468f9f3fc5f50b/download)
    [Logs](https://api.biosimulations.org/logs/677d61a767468f9f3fc5f50b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61a767468f9f3fc5f50b)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(S1, S1_stoich)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d61a4f8016f90e7cbdaec/download)
    [Logs](https://api.biosimulations.org/logs/677d61a4f8016f90e7cbdaec?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61a4f8016f90e7cbdaec)

    HTTP response: 201| +|[01418-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01418-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(S1_stoich, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d61acf8016f90e7cbdaff/download)
    [Logs](https://api.biosimulations.org/logs/677d61acf8016f90e7cbdaff?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61acf8016f90e7cbdaff)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(S1_stoich, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d61aa67468f9f3fc5f511/download)
    [Logs](https://api.biosimulations.org/logs/677d61aa67468f9f3fc5f511?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61aa67468f9f3fc5f511)

    HTTP response: 201| +|[01419-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01419-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(S1_stoich, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d61b4f8016f90e7cbdb1e/download)
    [Logs](https://api.biosimulations.org/logs/677d61b4f8016f90e7cbdb1e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61b4f8016f90e7cbdb1e)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(S1_stoich, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d61aff8016f90e7cbdb0f/download)
    [Logs](https://api.biosimulations.org/logs/677d61aff8016f90e7cbdb0f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61aff8016f90e7cbdb0f)

    HTTP response: 201| +|[01420-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01420-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d61b967468f9f3fc5f539/download)
    [Logs](https://api.biosimulations.org/logs/677d61b967468f9f3fc5f539?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61b967468f9f3fc5f539)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d61b767468f9f3fc5f532/download)
    [Logs](https://api.biosimulations.org/logs/677d61b767468f9f3fc5f532?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61b767468f9f3fc5f532)

    HTTP response: 201| +|[01421-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01421-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d61bf67468f9f3fc5f553/download)
    [Logs](https://api.biosimulations.org/logs/677d61bf67468f9f3fc5f553?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61bf67468f9f3fc5f553)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d61bcf8016f90e7cbdb44/download)
    [Logs](https://api.biosimulations.org/logs/677d61bcf8016f90e7cbdb44?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61bcf8016f90e7cbdb44)

    HTTP response: 201| +|[01422-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01422-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d61c4f8016f90e7cbdb5b/download)
    [Logs](https://api.biosimulations.org/logs/677d61c4f8016f90e7cbdb5b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61c4f8016f90e7cbdb5b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d61c267468f9f3fc5f565/download)
    [Logs](https://api.biosimulations.org/logs/677d61c267468f9f3fc5f565?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61c267468f9f3fc5f565)

    HTTP response: 201| +|[01423-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01423-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d61ca67468f9f3fc5f58f/download)
    [Logs](https://api.biosimulations.org/logs/677d61ca67468f9f3fc5f58f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61ca67468f9f3fc5f58f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d61c767468f9f3fc5f574/download)
    [Logs](https://api.biosimulations.org/logs/677d61c767468f9f3fc5f574?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61c767468f9f3fc5f574)

    HTTP response: 201| +|[01424-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01424-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d61cf3e750b90a426785a/download)
    [Logs](https://api.biosimulations.org/logs/677d61cf3e750b90a426785a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61cf3e750b90a426785a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d61cd67468f9f3fc5f59f/download)
    [Logs](https://api.biosimulations.org/logs/677d61cd67468f9f3fc5f59f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61cd67468f9f3fc5f59f)

    HTTP response: 201| +|[01425-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01425-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d61d567468f9f3fc5f5b5/download)
    [Logs](https://api.biosimulations.org/logs/677d61d567468f9f3fc5f5b5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61d567468f9f3fc5f5b5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d61d267468f9f3fc5f5af/download)
    [Logs](https://api.biosimulations.org/logs/677d61d267468f9f3fc5f5af?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61d267468f9f3fc5f5af)

    HTTP response: 201| +|[01426-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01426-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d61da67468f9f3fc5f5db/download)
    [Logs](https://api.biosimulations.org/logs/677d61da67468f9f3fc5f5db?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61da67468f9f3fc5f5db)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d61d83e750b90a4267873/download)
    [Logs](https://api.biosimulations.org/logs/677d61d83e750b90a4267873?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61d83e750b90a4267873)

    HTTP response: 201| +|[01427-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01427-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d61e03e750b90a426789d/download)
    [Logs](https://api.biosimulations.org/logs/677d61e03e750b90a426789d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61e03e750b90a426789d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d61de3e750b90a4267895/download)
    [Logs](https://api.biosimulations.org/logs/677d61de3e750b90a4267895?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61de3e750b90a4267895)

    HTTP response: 201| +|[01428-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01428-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d61e63e750b90a42678af/download)
    [Logs](https://api.biosimulations.org/logs/677d61e63e750b90a42678af?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61e63e750b90a42678af)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d61e367468f9f3fc5f601/download)
    [Logs](https://api.biosimulations.org/logs/677d61e367468f9f3fc5f601?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61e367468f9f3fc5f601)

    HTTP response: 201| +|[01429-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01429-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d61eb3e750b90a42678c4/download)
    [Logs](https://api.biosimulations.org/logs/677d61eb3e750b90a42678c4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61eb3e750b90a42678c4)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d61e867468f9f3fc5f622/download)
    [Logs](https://api.biosimulations.org/logs/677d61e867468f9f3fc5f622?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61e867468f9f3fc5f622)

    HTTP response: 201| +|[01430-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01430-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d61f1f8016f90e7cbdbf4/download)
    [Logs](https://api.biosimulations.org/logs/677d61f1f8016f90e7cbdbf4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61f1f8016f90e7cbdbf4)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d61ef67468f9f3fc5f630/download)
    [Logs](https://api.biosimulations.org/logs/677d61ef67468f9f3fc5f630?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61ef67468f9f3fc5f630)

    HTTP response: 201| +|[01431-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01431-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d61f7f8016f90e7cbdc12/download)
    [Logs](https://api.biosimulations.org/logs/677d61f7f8016f90e7cbdc12?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61f7f8016f90e7cbdc12)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d61f43e750b90a42678ee/download)
    [Logs](https://api.biosimulations.org/logs/677d61f43e750b90a42678ee?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61f43e750b90a42678ee)

    HTTP response: 201| +|[01432-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01432-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d61fc3e750b90a4267914/download)
    [Logs](https://api.biosimulations.org/logs/677d61fc3e750b90a4267914?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61fc3e750b90a4267914)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d61faf8016f90e7cbdc1f/download)
    [Logs](https://api.biosimulations.org/logs/677d61faf8016f90e7cbdc1f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61faf8016f90e7cbdc1f)

    HTTP response: 201| +|[01433-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01433-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d62013e750b90a4267922/download)
    [Logs](https://api.biosimulations.org/logs/677d62013e750b90a4267922?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62013e750b90a4267922)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d61ff3e750b90a426791e/download)
    [Logs](https://api.biosimulations.org/logs/677d61ff3e750b90a426791e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d61ff3e750b90a426791e)

    HTTP response: 201| +|[01434-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01434-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d620667468f9f3fc5f686/download)
    [Logs](https://api.biosimulations.org/logs/677d620667468f9f3fc5f686?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d620667468f9f3fc5f686)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6204f8016f90e7cbdc37/download)
    [Logs](https://api.biosimulations.org/logs/677d6204f8016f90e7cbdc37?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6204f8016f90e7cbdc37)

    HTTP response: 201| +|[01435-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01435-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d620c67468f9f3fc5f696/download)
    [Logs](https://api.biosimulations.org/logs/677d620c67468f9f3fc5f696?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d620c67468f9f3fc5f696)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d62093e750b90a426794d/download)
    [Logs](https://api.biosimulations.org/logs/677d62093e750b90a426794d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62093e750b90a426794d)

    HTTP response: 201| +|[01436-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01436-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d621167468f9f3fc5f6b1/download)
    [Logs](https://api.biosimulations.org/logs/677d621167468f9f3fc5f6b1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d621167468f9f3fc5f6b1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d620e3e750b90a4267962/download)
    [Logs](https://api.biosimulations.org/logs/677d620e3e750b90a4267962?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d620e3e750b90a4267962)

    HTTP response: 201| +|[01437-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01437-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6217f8016f90e7cbdc88/download)
    [Logs](https://api.biosimulations.org/logs/677d6217f8016f90e7cbdc88?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6217f8016f90e7cbdc88)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d62143e750b90a426798a/download)
    [Logs](https://api.biosimulations.org/logs/677d62143e750b90a426798a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62143e750b90a426798a)

    HTTP response: 201| +|[01438-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01438-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d621b67468f9f3fc5f6dc/download)
    [Logs](https://api.biosimulations.org/logs/677d621b67468f9f3fc5f6dc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d621b67468f9f3fc5f6dc)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d621967468f9f3fc5f6d5/download)
    [Logs](https://api.biosimulations.org/logs/677d621967468f9f3fc5f6d5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d621967468f9f3fc5f6d5)

    HTTP response: 201| +|[01439-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01439-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d622167468f9f3fc5f6ed/download)
    [Logs](https://api.biosimulations.org/logs/677d622167468f9f3fc5f6ed?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d622167468f9f3fc5f6ed)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d621e3e750b90a42679b5/download)
    [Logs](https://api.biosimulations.org/logs/677d621e3e750b90a42679b5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d621e3e750b90a42679b5)

    HTTP response: 201| +|[01440-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01440-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d622667468f9f3fc5f6fb/download)
    [Logs](https://api.biosimulations.org/logs/677d622667468f9f3fc5f6fb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d622667468f9f3fc5f6fb)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d62243e750b90a42679d1/download)
    [Logs](https://api.biosimulations.org/logs/677d62243e750b90a42679d1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62243e750b90a42679d1)

    HTTP response: 201| +|[01441-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01441-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d622b3e750b90a42679fa/download)
    [Logs](https://api.biosimulations.org/logs/677d622b3e750b90a42679fa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d622b3e750b90a42679fa)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6229f8016f90e7cbdccf/download)
    [Logs](https://api.biosimulations.org/logs/677d6229f8016f90e7cbdccf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6229f8016f90e7cbdccf)

    HTTP response: 201| +|[01442-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01442-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6230f8016f90e7cbdd01/download)
    [Logs](https://api.biosimulations.org/logs/677d6230f8016f90e7cbdd01?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6230f8016f90e7cbdd01)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d622e3e750b90a4267a02/download)
    [Logs](https://api.biosimulations.org/logs/677d622e3e750b90a4267a02?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d622e3e750b90a4267a02)

    HTTP response: 201| +|[01443-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01443-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d623567468f9f3fc5f74b/download)
    [Logs](https://api.biosimulations.org/logs/677d623567468f9f3fc5f74b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d623567468f9f3fc5f74b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d62333e750b90a4267a18/download)
    [Logs](https://api.biosimulations.org/logs/677d62333e750b90a4267a18?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62333e750b90a4267a18)

    HTTP response: 201| +|[01444-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01444-sbml-l3v2.xml)|pass|pass|pass|
    stochiometry Mutable stochiometry for species which appear multiple times in a single reaction is not currently supported, species reference id: A1_sr, at ?storeSymbolValue@ModelDataStoreSymbolResolver@rrllvm@@UEAAPEAVValue@llvm@@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@PEAV34@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d623a67468f9f3fc5f758/download)
    [Logs](https://api.biosimulations.org/logs/677d623a67468f9f3fc5f758?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d623a67468f9f3fc5f758)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Mutable stochiometry for species which appear multiple times in a single reaction is not currently supported, species reference id: A1_sr, at virtual llvm::Value* rrllvm::ModelDataStoreSymbolResolver::storeSymbolValue(const string&, llvm::Value*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d6238f8016f90e7cbdd1b/download)
    [Logs](https://api.biosimulations.org/logs/677d6238f8016f90e7cbdd1b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6238f8016f90e7cbdd1b)

    HTTP response: 201| +|[01445-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01445-sbml-l3v2.xml)|pass|pass|pass|
    stochiometry Mutable stochiometry for species which appear multiple times in a single reaction is not currently supported, species reference id: A1_sr, at ?storeSymbolValue@ModelDataStoreSymbolResolver@rrllvm@@UEAAPEAVValue@llvm@@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@PEAV34@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d623f67468f9f3fc5f780/download)
    [Logs](https://api.biosimulations.org/logs/677d623f67468f9f3fc5f780?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d623f67468f9f3fc5f780)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Mutable stochiometry for species which appear multiple times in a single reaction is not currently supported, species reference id: A1_sr, at virtual llvm::Value* rrllvm::ModelDataStoreSymbolResolver::storeSymbolValue(const string&, llvm::Value*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d623d3e750b90a4267a32/download)
    [Logs](https://api.biosimulations.org/logs/677d623d3e750b90a4267a32?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d623d3e750b90a4267a32)

    HTTP response: 201| +|[01446-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01446-sbml-l3v2.xml)|pass|pass|pass|
    stochiometry Mutable stochiometry for species which appear multiple times in a single reaction is not currently supported, species reference id: A1_sr, at ?storeSymbolValue@ModelDataStoreSymbolResolver@rrllvm@@UEAAPEAVValue@llvm@@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@PEAV34@@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d62453e750b90a4267a57/download)
    [Logs](https://api.biosimulations.org/logs/677d62453e750b90a4267a57?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62453e750b90a4267a57)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d624267468f9f3fc5f78a/download)
    [Logs](https://api.biosimulations.org/logs/677d624267468f9f3fc5f78a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d624267468f9f3fc5f78a)

    HTTP response: 201| +|[01447-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01447-sbml-l3v2.xml)|pass|pass|pass|
    stochiometry Mutable stochiometry for species which appear multiple times in a single reaction is not currently supported, species reference id: A_sr1, at ?storeSymbolValue@ModelDataStoreSymbolResolver@rrllvm@@UEAAPEAVValue@llvm@@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@PEAV34@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d624967468f9f3fc5f7ab/download)
    [Logs](https://api.biosimulations.org/logs/677d624967468f9f3fc5f7ab?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d624967468f9f3fc5f7ab)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Mutable stochiometry for species which appear multiple times in a single reaction is not currently supported, species reference id: A_sr1, at virtual llvm::Value* rrllvm::ModelDataStoreSymbolResolver::storeSymbolValue(const string&, llvm::Value*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d624767468f9f3fc5f7a1/download)
    [Logs](https://api.biosimulations.org/logs/677d624767468f9f3fc5f7a1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d624767468f9f3fc5f7a1)

    HTTP response: 201| +|[01448-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01448-sbml-l3v2.xml)|pass|pass|pass|
    stochiometry Mutable stochiometry for species which appear multiple times in a single reaction is not currently supported, species reference id: A_sr1, at ?storeSymbolValue@ModelDataStoreSymbolResolver@rrllvm@@UEAAPEAVValue@llvm@@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@PEAV34@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d624f3e750b90a4267a8a/download)
    [Logs](https://api.biosimulations.org/logs/677d624f3e750b90a4267a8a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d624f3e750b90a4267a8a)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Mutable stochiometry for species which appear multiple times in a single reaction is not currently supported, species reference id: A_sr1, at virtual llvm::Value* rrllvm::ModelDataStoreSymbolResolver::storeSymbolValue(const string&, llvm::Value*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d624df8016f90e7cbdd7a/download)
    [Logs](https://api.biosimulations.org/logs/677d624df8016f90e7cbdd7a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d624df8016f90e7cbdd7a)

    HTTP response: 201| +|[01449-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01449-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d62553e750b90a4267a9f/download)
    [Logs](https://api.biosimulations.org/logs/677d62553e750b90a4267a9f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62553e750b90a4267a9f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d62523e750b90a4267a9a/download)
    [Logs](https://api.biosimulations.org/logs/677d62523e750b90a4267a9a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62523e750b90a4267a9a)

    HTTP response: 201| +|[01450-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01450-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d625a67468f9f3fc5f7ea/download)
    [Logs](https://api.biosimulations.org/logs/677d625a67468f9f3fc5f7ea?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d625a67468f9f3fc5f7ea)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d625767468f9f3fc5f7d7/download)
    [Logs](https://api.biosimulations.org/logs/677d625767468f9f3fc5f7d7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d625767468f9f3fc5f7d7)

    HTTP response: 201| +|[01451-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01451-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d625ff8016f90e7cbddba/download)
    [Logs](https://api.biosimulations.org/logs/677d625ff8016f90e7cbddba?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d625ff8016f90e7cbddba)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d625d3e750b90a4267ac0/download)
    [Logs](https://api.biosimulations.org/logs/677d625d3e750b90a4267ac0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d625d3e750b90a4267ac0)

    HTTP response: 201| +|[01452-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01452-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6265f8016f90e7cbddcd/download)
    [Logs](https://api.biosimulations.org/logs/677d6265f8016f90e7cbddcd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6265f8016f90e7cbddcd)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d62623e750b90a4267ad1/download)
    [Logs](https://api.biosimulations.org/logs/677d62623e750b90a4267ad1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62623e750b90a4267ad1)

    HTTP response: 201| +|[01453-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01453-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d626a67468f9f3fc5f834/download)
    [Logs](https://api.biosimulations.org/logs/677d626a67468f9f3fc5f834?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d626a67468f9f3fc5f834)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d626867468f9f3fc5f82b/download)
    [Logs](https://api.biosimulations.org/logs/677d626867468f9f3fc5f82b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d626867468f9f3fc5f82b)

    HTTP response: 201| +|[01454-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01454-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(S1, 0.1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d627167468f9f3fc5f84e/download)
    [Logs](https://api.biosimulations.org/logs/677d627167468f9f3fc5f84e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d627167468f9f3fc5f84e)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(S1, 0.1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d626ef8016f90e7cbdde9/download)
    [Logs](https://api.biosimulations.org/logs/677d626ef8016f90e7cbdde9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d626ef8016f90e7cbdde9)

    HTTP response: 201| +|[01455-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01455-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d62783e750b90a4267b26/download)
    [Logs](https://api.biosimulations.org/logs/677d62783e750b90a4267b26?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62783e750b90a4267b26)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d62753e750b90a4267b1a/download)
    [Logs](https://api.biosimulations.org/logs/677d62753e750b90a4267b1a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62753e750b90a4267b1a)

    HTTP response: 201| +|[01456-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01456-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d627df8016f90e7cbde24/download)
    [Logs](https://api.biosimulations.org/logs/677d627df8016f90e7cbde24?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d627df8016f90e7cbde24)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d627a3e750b90a4267b2a/download)
    [Logs](https://api.biosimulations.org/logs/677d627a3e750b90a4267b2a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d627a3e750b90a4267b2a)

    HTTP response: 201| +|[01457-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01457-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d6285f8016f90e7cbde41/download)
    [Logs](https://api.biosimulations.org/logs/677d6285f8016f90e7cbde41?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6285f8016f90e7cbde41)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d628167468f9f3fc5f88d/download)
    [Logs](https://api.biosimulations.org/logs/677d628167468f9f3fc5f88d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d628167468f9f3fc5f88d)

    HTTP response: 201| +|[01458-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01458-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d628b3e750b90a4267b59/download)
    [Logs](https://api.biosimulations.org/logs/677d628b3e750b90a4267b59?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d628b3e750b90a4267b59)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d62893e750b90a4267b4c/download)
    [Logs](https://api.biosimulations.org/logs/677d62893e750b90a4267b4c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62893e750b90a4267b4c)

    HTTP response: 201| +|[01459-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01459-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d62913e750b90a4267b66/download)
    [Logs](https://api.biosimulations.org/logs/677d62913e750b90a4267b66?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62913e750b90a4267b66)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf k1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d628e67468f9f3fc5f8be/download)
    [Logs](https://api.biosimulations.org/logs/677d628e67468f9f3fc5f8be?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d628e67468f9f3fc5f8be)

    HTTP response: 201| +|[01460-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01460-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d6296f8016f90e7cbde7a/download)
    [Logs](https://api.biosimulations.org/logs/677d6296f8016f90e7cbde7a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6296f8016f90e7cbde7a)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf k1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d629467468f9f3fc5f8c7/download)
    [Logs](https://api.biosimulations.org/logs/677d629467468f9f3fc5f8c7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d629467468f9f3fc5f8c7)

    HTTP response: 201| +|[01461-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01461-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d629b67468f9f3fc5f8f3/download)
    [Logs](https://api.biosimulations.org/logs/677d629b67468f9f3fc5f8f3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d629b67468f9f3fc5f8f3)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf p , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d629967468f9f3fc5f8e8/download)
    [Logs](https://api.biosimulations.org/logs/677d629967468f9f3fc5f8e8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d629967468f9f3fc5f8e8)

    HTTP response: 201| +|[01462-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01462-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d62a03e750b90a4267b9d/download)
    [Logs](https://api.biosimulations.org/logs/677d62a03e750b90a4267b9d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62a03e750b90a4267b9d)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d629e67468f9f3fc5f8fd/download)
    [Logs](https://api.biosimulations.org/logs/677d629e67468f9f3fc5f8fd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d629e67468f9f3fc5f8fd)

    HTTP response: 201| +|[01463-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01463-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d62a83e750b90a4267bcf/download)
    [Logs](https://api.biosimulations.org/logs/677d62a83e750b90a4267bcf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62a83e750b90a4267bcf)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d62a367468f9f3fc5f905/download)
    [Logs](https://api.biosimulations.org/logs/677d62a367468f9f3fc5f905?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62a367468f9f3fc5f905)

    HTTP response: 201| +|[01464-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01464-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d62ad3e750b90a4267bdb/download)
    [Logs](https://api.biosimulations.org/logs/677d62ad3e750b90a4267bdb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62ad3e750b90a4267bdb)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d62aa3e750b90a4267bd3/download)
    [Logs](https://api.biosimulations.org/logs/677d62aa3e750b90a4267bd3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62aa3e750b90a4267bd3)

    HTTP response: 201| +|[01465-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01465-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d62b2f8016f90e7cbdeee/download)
    [Logs](https://api.biosimulations.org/logs/677d62b2f8016f90e7cbdeee?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62b2f8016f90e7cbdeee)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d62b03e750b90a4267be2/download)
    [Logs](https://api.biosimulations.org/logs/677d62b03e750b90a4267be2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62b03e750b90a4267be2)

    HTTP response: 201| +|[01466-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01466-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d62b867468f9f3fc5f957/download)
    [Logs](https://api.biosimulations.org/logs/677d62b867468f9f3fc5f957?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62b867468f9f3fc5f957)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d62b567468f9f3fc5f94b/download)
    [Logs](https://api.biosimulations.org/logs/677d62b567468f9f3fc5f94b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62b567468f9f3fc5f94b)

    HTTP response: 201| +|[01467-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01467-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d62bd3e750b90a4267c14/download)
    [Logs](https://api.biosimulations.org/logs/677d62bd3e750b90a4267c14?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62bd3e750b90a4267c14)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d62bb67468f9f3fc5f969/download)
    [Logs](https://api.biosimulations.org/logs/677d62bb67468f9f3fc5f969?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62bb67468f9f3fc5f969)

    HTTP response: 201| +|[01468-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01468-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d62c3f8016f90e7cbdf28/download)
    [Logs](https://api.biosimulations.org/logs/677d62c3f8016f90e7cbdf28?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62c3f8016f90e7cbdf28)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp635025 is invalid. - Data generator sub2__sub1__s1_1 is invalid. - Variable sub2__sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__sub1__s1'] does not match any elements of model model_1 . - Data generator sub2__sub1__C_1 is invalid. - Variable sub2__sub1__C is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='sub2__sub1__C'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d62c03e750b90a4267c1e/download)
    [Logs](https://api.biosimulations.org/logs/677d62c03e750b90a4267c1e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62c03e750b90a4267c1e)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp160237 is invalid. - Data generator sub2__sub1__s1_1 is invalid. - Variable sub2__sub1__s1 is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='sub2__sub1__s1'] does not match any elements of model model_1 . - Data generator sub2__sub1__C_1 is invalid. - Variable sub2__sub1__C is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment[@id='sub2__sub1__C'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01469-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01469-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d62c8f8016f90e7cbdf3c/download)
    [Logs](https://api.biosimulations.org/logs/677d62c8f8016f90e7cbdf3c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62c8f8016f90e7cbdf3c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d62c567468f9f3fc5f97d/download)
    [Logs](https://api.biosimulations.org/logs/677d62c567468f9f3fc5f97d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62c567468f9f3fc5f97d)

    HTTP response: 201| +|[01470-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01470-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d62cd67468f9f3fc5f99e/download)
    [Logs](https://api.biosimulations.org/logs/677d62cd67468f9f3fc5f99e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62cd67468f9f3fc5f99e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d62ca67468f9f3fc5f99a/download)
    [Logs](https://api.biosimulations.org/logs/677d62ca67468f9f3fc5f99a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62ca67468f9f3fc5f99a)

    HTTP response: 201| +|[01471-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01471-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d62d3f8016f90e7cbdf70/download)
    [Logs](https://api.biosimulations.org/logs/677d62d3f8016f90e7cbdf70?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62d3f8016f90e7cbdf70)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp343007 is invalid. - Model model_1 is invalid. - The model file 01471-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. The with the id 'ExtMod1' refers to a source 'enzyme_model-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. - Data generator A__E_1 is invalid. - Variable A__E_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__E'] does not match any elements of model model_1 . - Data generator A__ES_1 is invalid. - Variable A__ES_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__ES'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d62d067468f9f3fc5f9a7/download)
    [Logs](https://api.biosimulations.org/logs/677d62d067468f9f3fc5f9a7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62d067468f9f3fc5f9a7)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp108948 is invalid. - Model model_1 is invalid. - The model file 01471-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 27, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 63, column 4: The external model referenced in this model could not be resolved. The with the id 'ExtMod1' refers to a source 'enzyme_model-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. - Data generator A__E_1 is invalid. - Variable A__E_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__E'] does not match any elements of model model_1 . - Data generator A__ES_1 is invalid. - Variable A__ES_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__ES'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01472-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01472-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d62d8f8016f90e7cbdf96/download)
    [Logs](https://api.biosimulations.org/logs/677d62d8f8016f90e7cbdf96?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62d8f8016f90e7cbdf96)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp871078 is invalid. - Model model_1 is invalid. - The model file 01472-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 28, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 24, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 28, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 24, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 28, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 24, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 28, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 24, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 28, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 24, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 28, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 24, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 28, column 4: The external model referenced in this model could not be resolved. The with the id 'ExtMod1' refers to a source 'enzyme_model-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. - Data generator A__submod1__E_1 is invalid. - Variable A__submod1__E_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__submod1__E'] does not match any elements of model model_1 . - Data generator A__submod1__ES_1 is invalid. - Variable A__submod1__ES_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__submod1__ES'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d62d567468f9f3fc5f9be/download)
    [Logs](https://api.biosimulations.org/logs/677d62d567468f9f3fc5f9be?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62d567468f9f3fc5f9be)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp319829 is invalid. - Model model_1 is invalid. - The model file 01472-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 28, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 24, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 28, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 24, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 28, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 24, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 28, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 24, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 28, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 24, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 28, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 24, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 28, column 4: The external model referenced in this model could not be resolved. The with the id 'ExtMod1' refers to a source 'enzyme_model-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. - Data generator A__submod1__E_1 is invalid. - Variable A__submod1__E_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__submod1__E'] does not match any elements of model model_1 . - Data generator A__submod1__ES_1 is invalid. - Variable A__submod1__ES_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__submod1__ES'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01473-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01473-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d62ddf8016f90e7cbdfa8/download)
    [Logs](https://api.biosimulations.org/logs/677d62ddf8016f90e7cbdfa8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62ddf8016f90e7cbdfa8)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp440555 is invalid. - Model model_1 is invalid. - The model file 01473-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 34, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 30, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 34, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 30, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 34, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 30, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 34, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 30, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 34, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 30, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 34, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 30, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 34, column 4: The external model referenced in this model could not be resolved. The with the id 'ExtMod1' refers to a source 'enzyme_model-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. - Data generator A__submod1__E_1 is invalid. - Variable A__submod1__E_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__submod1__E'] does not match any elements of model model_1 . - Data generator A__submod1__ES_1 is invalid. - Variable A__submod1__ES_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__submod1__ES'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d62db3e750b90a4267ca3/download)
    [Logs](https://api.biosimulations.org/logs/677d62db3e750b90a4267ca3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62db3e750b90a4267ca3)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp940942 is invalid. - Model model_1 is invalid. - The model file 01473-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 34, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 30, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 34, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 30, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 34, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 30, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 34, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 30, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 34, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 30, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 34, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'ExtMod1': could not the resolve 'source' attribute 'enzyme_model-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 30, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'A' because the external model definition it referenced (model 'ExtMod1') could not be resolved. - SBML component consistency (1090101) at line 34, column 4: The external model referenced in this model could not be resolved. The with the id 'ExtMod1' refers to a source 'enzyme_model-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. - Data generator A__submod1__E_1 is invalid. - Variable A__submod1__E_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__submod1__E'] does not match any elements of model model_1 . - Data generator A__submod1__ES_1 is invalid. - Variable A__submod1__ES_1_s is invalid. - XPath /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='A__submod1__ES'] does not match any elements of model model_1 .```

    Exception type: ```ValueError```| +|[01474-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01474-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d62e2f8016f90e7cbdfbc/download)
    [Logs](https://api.biosimulations.org/logs/677d62e2f8016f90e7cbdfbc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62e2f8016f90e7cbdfbc)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d62e03e750b90a4267cb1/download)
    [Logs](https://api.biosimulations.org/logs/677d62e03e750b90a4267cb1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62e03e750b90a4267cb1)

    HTTP response: 201| +|[01475-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01475-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d62e8f8016f90e7cbdfd1/download)
    [Logs](https://api.biosimulations.org/logs/677d62e8f8016f90e7cbdfd1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62e8f8016f90e7cbdfd1)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp536772 is invalid. - Model model_1 is invalid. - The model file 01475-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. The with the id 'moddef2' refers to a source 'external-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. ```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d62e5f8016f90e7cbdfc9/download)
    [Logs](https://api.biosimulations.org/logs/677d62e5f8016f90e7cbdfc9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62e5f8016f90e7cbdfc9)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp145754 is invalid. - Model model_1 is invalid. - The model file 01475-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. The with the id 'moddef2' refers to a source 'external-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. ```

    Exception type: ```ValueError```| +|[01476-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01476-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d62ed67468f9f3fc5fa09/download)
    [Logs](https://api.biosimulations.org/logs/677d62ed67468f9f3fc5fa09?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62ed67468f9f3fc5fa09)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp744772 is invalid. - Model model_1 is invalid. - The model file 01476-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. The with the id 'moddef2' refers to a source 'external-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. ```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d62eaf8016f90e7cbdfdc/download)
    [Logs](https://api.biosimulations.org/logs/677d62eaf8016f90e7cbdfdc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62eaf8016f90e7cbdfdc)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp445141 is invalid. - Model model_1 is invalid. - The model file 01476-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. The with the id 'moddef2' refers to a source 'external-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. ```

    Exception type: ```ValueError```| +|[01477-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01477-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d62f3f8016f90e7cbe000/download)
    [Logs](https://api.biosimulations.org/logs/677d62f3f8016f90e7cbe000?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62f3f8016f90e7cbe000)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp170507 is invalid. - Model model_1 is invalid. - The model file 01477-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. The with the id 'moddef2' refers to a source 'external-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. ```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d62f0f8016f90e7cbdff4/download)
    [Logs](https://api.biosimulations.org/logs/677d62f0f8016f90e7cbdff4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62f0f8016f90e7cbdff4)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp328591 is invalid. - Model model_1 is invalid. - The model file 01477-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. The with the id 'moddef2' refers to a source 'external-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. ```

    Exception type: ```ValueError```| +|[01478-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01478-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d62f867468f9f3fc5fa23/download)
    [Logs](https://api.biosimulations.org/logs/677d62f867468f9f3fc5fa23?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62f867468f9f3fc5fa23)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d62f63e750b90a4267d16/download)
    [Logs](https://api.biosimulations.org/logs/677d62f63e750b90a4267d16?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62f63e750b90a4267d16)

    HTTP response: 201| +|[01479-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01479-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = avogadro / 1e23 - P1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d62fd3e750b90a4267d30/download)
    [Logs](https://api.biosimulations.org/logs/677d62fd3e750b90a4267d30?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62fd3e750b90a4267d30)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'P1' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d62fbf8016f90e7cbe028/download)
    [Logs](https://api.biosimulations.org/logs/677d62fbf8016f90e7cbe028?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d62fbf8016f90e7cbe028)

    HTTP response: 201| +|[01480-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01480-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6303f8016f90e7cbe057/download)
    [Logs](https://api.biosimulations.org/logs/677d6303f8016f90e7cbe057?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6303f8016f90e7cbe057)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d6300f8016f90e7cbe052/download)
    [Logs](https://api.biosimulations.org/logs/677d6300f8016f90e7cbe052?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6300f8016f90e7cbe052)

    HTTP response: 201| +|[01481-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01481-sbml-l2v5.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d630867468f9f3fc5fa6b/download)
    [Logs](https://api.biosimulations.org/logs/677d630867468f9f3fc5fa6b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d630867468f9f3fc5fa6b)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d630567468f9f3fc5fa5f/download)
    [Logs](https://api.biosimulations.org/logs/677d630567468f9f3fc5fa5f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d630567468f9f3fc5fa5f)

    HTTP response: 201| +|[01482-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01482-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = rateOf(S1) - P1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d630df8016f90e7cbe080/download)
    [Logs](https://api.biosimulations.org/logs/677d630df8016f90e7cbe080?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d630df8016f90e7cbe080)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'P1' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d630bf8016f90e7cbe074/download)
    [Logs](https://api.biosimulations.org/logs/677d630bf8016f90e7cbe074?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d630bf8016f90e7cbe074)

    HTTP response: 201| +|[01483-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01483-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = rateOf(S1) - P1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d631267468f9f3fc5fa92/download)
    [Logs](https://api.biosimulations.org/logs/677d631267468f9f3fc5fa92?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d631267468f9f3fc5fa92)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'P1' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d630ff8016f90e7cbe08b/download)
    [Logs](https://api.biosimulations.org/logs/677d630ff8016f90e7cbe08b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d630ff8016f90e7cbe08b)

    HTTP response: 201| +|[01484-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01484-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = P1 - S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d631967468f9f3fc5fab0/download)
    [Logs](https://api.biosimulations.org/logs/677d631967468f9f3fc5fab0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d631967468f9f3fc5fab0)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'P1' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d631667468f9f3fc5fa9e/download)
    [Logs](https://api.biosimulations.org/logs/677d631667468f9f3fc5fa9e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d631667468f9f3fc5fa9e)

    HTTP response: 201| +|[01485-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01485-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d631e3e750b90a4267dc9/download)
    [Logs](https://api.biosimulations.org/logs/677d631e3e750b90a4267dc9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d631e3e750b90a4267dc9)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d631b67468f9f3fc5fabc/download)
    [Logs](https://api.biosimulations.org/logs/677d631b67468f9f3fc5fabc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d631b67468f9f3fc5fabc)

    HTTP response: 201| +|[01486-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01486-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d632367468f9f3fc5fae7/download)
    [Logs](https://api.biosimulations.org/logs/677d632367468f9f3fc5fae7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d632367468f9f3fc5fae7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6320f8016f90e7cbe0ca/download)
    [Logs](https://api.biosimulations.org/logs/677d6320f8016f90e7cbe0ca?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6320f8016f90e7cbe0ca)

    HTTP response: 201| +|[01487-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01487-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d63293e750b90a4267df4/download)
    [Logs](https://api.biosimulations.org/logs/677d63293e750b90a4267df4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63293e750b90a4267df4)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d63263e750b90a4267dea/download)
    [Logs](https://api.biosimulations.org/logs/677d63263e750b90a4267dea?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63263e750b90a4267dea)

    HTTP response: 201| +|[01488-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01488-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d632e3e750b90a4267e00/download)
    [Logs](https://api.biosimulations.org/logs/677d632e3e750b90a4267e00?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d632e3e750b90a4267e00)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d632cf8016f90e7cbe0f8/download)
    [Logs](https://api.biosimulations.org/logs/677d632cf8016f90e7cbe0f8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d632cf8016f90e7cbe0f8)

    HTTP response: 201| +|[01489-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01489-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d633367468f9f3fc5fb14/download)
    [Logs](https://api.biosimulations.org/logs/677d633367468f9f3fc5fb14?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d633367468f9f3fc5fb14)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d63313e750b90a4267e11/download)
    [Logs](https://api.biosimulations.org/logs/677d63313e750b90a4267e11?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63313e750b90a4267e11)

    HTTP response: 201| +|[01490-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01490-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6339f8016f90e7cbe136/download)
    [Logs](https://api.biosimulations.org/logs/677d6339f8016f90e7cbe136?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6339f8016f90e7cbe136)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d63363e750b90a4267e21/download)
    [Logs](https://api.biosimulations.org/logs/677d63363e750b90a4267e21?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63363e750b90a4267e21)

    HTTP response: 201| +|[01491-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01491-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d633e67468f9f3fc5fb3d/download)
    [Logs](https://api.biosimulations.org/logs/677d633e67468f9f3fc5fb3d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d633e67468f9f3fc5fb3d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d633b67468f9f3fc5fb34/download)
    [Logs](https://api.biosimulations.org/logs/677d633b67468f9f3fc5fb34?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d633b67468f9f3fc5fb34)

    HTTP response: 201| +|[01492-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01492-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6343f8016f90e7cbe159/download)
    [Logs](https://api.biosimulations.org/logs/677d6343f8016f90e7cbe159?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6343f8016f90e7cbe159)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d63413e750b90a4267e42/download)
    [Logs](https://api.biosimulations.org/logs/677d63413e750b90a4267e42?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63413e750b90a4267e42)

    HTTP response: 201| +|[01493-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01493-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d634d67468f9f3fc5fb77/download)
    [Logs](https://api.biosimulations.org/logs/677d634d67468f9f3fc5fb77?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d634d67468f9f3fc5fb77)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6349f8016f90e7cbe16a/download)
    [Logs](https://api.biosimulations.org/logs/677d6349f8016f90e7cbe16a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6349f8016f90e7cbe16a)

    HTTP response: 201| +|[01494-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01494-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6352f8016f90e7cbe192/download)
    [Logs](https://api.biosimulations.org/logs/677d6352f8016f90e7cbe192?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6352f8016f90e7cbe192)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d63503e750b90a4267e72/download)
    [Logs](https://api.biosimulations.org/logs/677d63503e750b90a4267e72?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63503e750b90a4267e72)

    HTTP response: 201| +|[01495-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01495-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d635867468f9f3fc5fba7/download)
    [Logs](https://api.biosimulations.org/logs/677d635867468f9f3fc5fba7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d635867468f9f3fc5fba7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6355f8016f90e7cbe19c/download)
    [Logs](https://api.biosimulations.org/logs/677d6355f8016f90e7cbe19c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6355f8016f90e7cbe19c)

    HTTP response: 201| +|[01496-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01496-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d635d3e750b90a4267ea9/download)
    [Logs](https://api.biosimulations.org/logs/677d635d3e750b90a4267ea9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d635d3e750b90a4267ea9)

    HTTP response: 201|
    FAIL[Download](https://api.biosimulations.org/results/677d635b67468f9f3fc5fbae/download)
    [Logs](https://api.biosimulations.org/logs/677d635b67468f9f3fc5fbae?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d635b67468f9f3fc5fbae)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :("SBML '/tmp/tmpt9xp2p_h/./01496-sbml-l3v2.xml' could not be imported into COPASI;\n\t", >)```

    Exception type: ```CombineArchiveExecutionError```| +|[01497-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01497-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d63623e750b90a4267eb4/download)
    [Logs](https://api.biosimulations.org/logs/677d63623e750b90a4267eb4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63623e750b90a4267eb4)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d636067468f9f3fc5fbb6/download)
    [Logs](https://api.biosimulations.org/logs/677d636067468f9f3fc5fbb6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d636067468f9f3fc5fbb6)

    HTTP response: 201| +|[01498-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01498-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d636767468f9f3fc5fbcd/download)
    [Logs](https://api.biosimulations.org/logs/677d636767468f9f3fc5fbcd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d636767468f9f3fc5fbcd)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d636567468f9f3fc5fbc5/download)
    [Logs](https://api.biosimulations.org/logs/677d636567468f9f3fc5fbc5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d636567468f9f3fc5fbc5)

    HTTP response: 201| +|[01499-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01499-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = P0 - S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d636df8016f90e7cbe1e3/download)
    [Logs](https://api.biosimulations.org/logs/677d636df8016f90e7cbe1e3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d636df8016f90e7cbe1e3)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'P0' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d636b3e750b90a4267edd/download)
    [Logs](https://api.biosimulations.org/logs/677d636b3e750b90a4267edd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d636b3e750b90a4267edd)

    HTTP response: 201| +|[01500-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01500-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = P0 - S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6372f8016f90e7cbe1fa/download)
    [Logs](https://api.biosimulations.org/logs/677d6372f8016f90e7cbe1fa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6372f8016f90e7cbe1fa)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'P0' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d636ff8016f90e7cbe1ee/download)
    [Logs](https://api.biosimulations.org/logs/677d636ff8016f90e7cbe1ee?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d636ff8016f90e7cbe1ee)

    HTTP response: 201| +|[01501-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01501-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = P0 - S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d637767468f9f3fc5fc13/download)
    [Logs](https://api.biosimulations.org/logs/677d637767468f9f3fc5fc13?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d637767468f9f3fc5fc13)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'P0' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d637467468f9f3fc5fc06/download)
    [Logs](https://api.biosimulations.org/logs/677d637467468f9f3fc5fc06?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d637467468f9f3fc5fc06)

    HTTP response: 201| +|[01502-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01502-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = P2 - abs(-1)' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d637d3e750b90a4267f35/download)
    [Logs](https://api.biosimulations.org/logs/677d637d3e750b90a4267f35?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d637d3e750b90a4267f35)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'P2' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d637a3e750b90a4267f1b/download)
    [Logs](https://api.biosimulations.org/logs/677d637a3e750b90a4267f1b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d637a3e750b90a4267f1b)

    HTTP response: 201| +|[01503-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01503-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = P1 - plus()' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d63823e750b90a4267f46/download)
    [Logs](https://api.biosimulations.org/logs/677d63823e750b90a4267f46?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63823e750b90a4267f46)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'P1' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d637ff8016f90e7cbe22c/download)
    [Logs](https://api.biosimulations.org/logs/677d637ff8016f90e7cbe22c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d637ff8016f90e7cbe22c)

    HTTP response: 201| +|[01504-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01504-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d63873e750b90a4267f5b/download)
    [Logs](https://api.biosimulations.org/logs/677d63873e750b90a4267f5b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63873e750b90a4267f5b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d63853e750b90a4267f51/download)
    [Logs](https://api.biosimulations.org/logs/677d63853e750b90a4267f51?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63853e750b90a4267f51)

    HTTP response: 201| +|[01505-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01505-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d638df8016f90e7cbe262/download)
    [Logs](https://api.biosimulations.org/logs/677d638df8016f90e7cbe262?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d638df8016f90e7cbe262)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d638b67468f9f3fc5fc8c/download)
    [Logs](https://api.biosimulations.org/logs/677d638b67468f9f3fc5fc8c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d638b67468f9f3fc5fc8c)

    HTTP response: 201| +|[01506-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01506-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d63923e750b90a4267f7d/download)
    [Logs](https://api.biosimulations.org/logs/677d63923e750b90a4267f7d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63923e750b90a4267f7d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d63903e750b90a4267f78/download)
    [Logs](https://api.biosimulations.org/logs/677d63903e750b90a4267f78?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63903e750b90a4267f78)

    HTTP response: 201| +|[01507-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01507-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d639767468f9f3fc5fcb8/download)
    [Logs](https://api.biosimulations.org/logs/677d639767468f9f3fc5fcb8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d639767468f9f3fc5fcb8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d639567468f9f3fc5fcac/download)
    [Logs](https://api.biosimulations.org/logs/677d639567468f9f3fc5fcac?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d639567468f9f3fc5fcac)

    HTTP response: 201| +|[01508-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01508-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d639df8016f90e7cbe29a/download)
    [Logs](https://api.biosimulations.org/logs/677d639df8016f90e7cbe29a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d639df8016f90e7cbe29a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d639a67468f9f3fc5fcc8/download)
    [Logs](https://api.biosimulations.org/logs/677d639a67468f9f3fc5fcc8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d639a67468f9f3fc5fcc8)

    HTTP response: 201| +|[01509-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01509-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d63a267468f9f3fc5fce0/download)
    [Logs](https://api.biosimulations.org/logs/677d63a267468f9f3fc5fce0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63a267468f9f3fc5fce0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d63a0f8016f90e7cbe2aa/download)
    [Logs](https://api.biosimulations.org/logs/677d63a0f8016f90e7cbe2aa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63a0f8016f90e7cbe2aa)

    HTTP response: 201| +|[01510-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01510-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d63a767468f9f3fc5fcf7/download)
    [Logs](https://api.biosimulations.org/logs/677d63a767468f9f3fc5fcf7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63a767468f9f3fc5fcf7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d63a5f8016f90e7cbe2b8/download)
    [Logs](https://api.biosimulations.org/logs/677d63a5f8016f90e7cbe2b8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63a5f8016f90e7cbe2b8)

    HTTP response: 201| +|[01511-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01511-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d63adf8016f90e7cbe2e1/download)
    [Logs](https://api.biosimulations.org/logs/677d63adf8016f90e7cbe2e1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63adf8016f90e7cbe2e1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d63aa3e750b90a4267fd4/download)
    [Logs](https://api.biosimulations.org/logs/677d63aa3e750b90a4267fd4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63aa3e750b90a4267fd4)

    HTTP response: 201| +|[01512-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01512-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d63b3f8016f90e7cbe2f8/download)
    [Logs](https://api.biosimulations.org/logs/677d63b3f8016f90e7cbe2f8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63b3f8016f90e7cbe2f8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d63b03e750b90a4267fea/download)
    [Logs](https://api.biosimulations.org/logs/677d63b03e750b90a4267fea?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63b03e750b90a4267fea)

    HTTP response: 201| +|[01513-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01513-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d63b93e750b90a4268017/download)
    [Logs](https://api.biosimulations.org/logs/677d63b93e750b90a4268017?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63b93e750b90a4268017)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d63b63e750b90a4268012/download)
    [Logs](https://api.biosimulations.org/logs/677d63b63e750b90a4268012?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63b63e750b90a4268012)

    HTTP response: 201| +|[01514-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01514-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d63bef8016f90e7cbe31d/download)
    [Logs](https://api.biosimulations.org/logs/677d63bef8016f90e7cbe31d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63bef8016f90e7cbe31d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d63bbf8016f90e7cbe307/download)
    [Logs](https://api.biosimulations.org/logs/677d63bbf8016f90e7cbe307?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63bbf8016f90e7cbe307)

    HTTP response: 201| +|[01515-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01515-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d63c43e750b90a426804a/download)
    [Logs](https://api.biosimulations.org/logs/677d63c43e750b90a426804a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63c43e750b90a426804a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d63c167468f9f3fc5fd68/download)
    [Logs](https://api.biosimulations.org/logs/677d63c167468f9f3fc5fd68?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63c167468f9f3fc5fd68)

    HTTP response: 201| +|[01516-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01516-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d63cb3e750b90a426805f/download)
    [Logs](https://api.biosimulations.org/logs/677d63cb3e750b90a426805f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63cb3e750b90a426805f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d63c867468f9f3fc5fd7e/download)
    [Logs](https://api.biosimulations.org/logs/677d63c867468f9f3fc5fd7e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63c867468f9f3fc5fd7e)

    HTTP response: 201| +|[01517-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01517-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d63d03e750b90a4268071/download)
    [Logs](https://api.biosimulations.org/logs/677d63d03e750b90a4268071?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63d03e750b90a4268071)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d63ce67468f9f3fc5fd8f/download)
    [Logs](https://api.biosimulations.org/logs/677d63ce67468f9f3fc5fd8f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63ce67468f9f3fc5fd8f)

    HTTP response: 201| +|[01518-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01518-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d63d83e750b90a426808b/download)
    [Logs](https://api.biosimulations.org/logs/677d63d83e750b90a426808b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63d83e750b90a426808b)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d63d5f8016f90e7cbe384/download)
    [Logs](https://api.biosimulations.org/logs/677d63d5f8016f90e7cbe384?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63d5f8016f90e7cbe384)

    HTTP response: 201| +|[01519-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01519-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d63dd3e750b90a4268098/download)
    [Logs](https://api.biosimulations.org/logs/677d63dd3e750b90a4268098?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63dd3e750b90a4268098)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d63db3e750b90a426808e/download)
    [Logs](https://api.biosimulations.org/logs/677d63db3e750b90a426808e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63db3e750b90a426808e)

    HTTP response: 201| +|[01520-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01520-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d63e2f8016f90e7cbe3aa/download)
    [Logs](https://api.biosimulations.org/logs/677d63e2f8016f90e7cbe3aa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63e2f8016f90e7cbe3aa)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d63e067468f9f3fc5fdd3/download)
    [Logs](https://api.biosimulations.org/logs/677d63e067468f9f3fc5fdd3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63e067468f9f3fc5fdd3)

    HTTP response: 201| +|[01521-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01521-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d63e83e750b90a42680b9/download)
    [Logs](https://api.biosimulations.org/logs/677d63e83e750b90a42680b9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63e83e750b90a42680b9)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d63e567468f9f3fc5fdd9/download)
    [Logs](https://api.biosimulations.org/logs/677d63e567468f9f3fc5fdd9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63e567468f9f3fc5fdd9)

    HTTP response: 201| +|[01522-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01522-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d63ed3e750b90a42680d6/download)
    [Logs](https://api.biosimulations.org/logs/677d63ed3e750b90a42680d6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63ed3e750b90a42680d6)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d63eb3e750b90a42680c4/download)
    [Logs](https://api.biosimulations.org/logs/677d63eb3e750b90a42680c4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63eb3e750b90a42680c4)

    HTTP response: 201| +|[01523-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01523-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d63f33e750b90a42680df/download)
    [Logs](https://api.biosimulations.org/logs/677d63f33e750b90a42680df?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63f33e750b90a42680df)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d63f0f8016f90e7cbe3db/download)
    [Logs](https://api.biosimulations.org/logs/677d63f0f8016f90e7cbe3db?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63f0f8016f90e7cbe3db)

    HTTP response: 201| +|[01524-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01524-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d63f83e750b90a42680fa/download)
    [Logs](https://api.biosimulations.org/logs/677d63f83e750b90a42680fa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63f83e750b90a42680fa)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d63f667468f9f3fc5fe38/download)
    [Logs](https://api.biosimulations.org/logs/677d63f667468f9f3fc5fe38?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63f667468f9f3fc5fe38)

    HTTP response: 201| +|[01525-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01525-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d63fe3e750b90a4268116/download)
    [Logs](https://api.biosimulations.org/logs/677d63fe3e750b90a4268116?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63fe3e750b90a4268116)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d63fbf8016f90e7cbe400/download)
    [Logs](https://api.biosimulations.org/logs/677d63fbf8016f90e7cbe400?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d63fbf8016f90e7cbe400)

    HTTP response: 201| +|[01526-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01526-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d64033e750b90a426812c/download)
    [Logs](https://api.biosimulations.org/logs/677d64033e750b90a426812c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64033e750b90a426812c)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d64003e750b90a4268125/download)
    [Logs](https://api.biosimulations.org/logs/677d64003e750b90a4268125?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64003e750b90a4268125)

    HTTP response: 201| +|[01527-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01527-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d640867468f9f3fc5fe81/download)
    [Logs](https://api.biosimulations.org/logs/677d640867468f9f3fc5fe81?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d640867468f9f3fc5fe81)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d640667468f9f3fc5fe7c/download)
    [Logs](https://api.biosimulations.org/logs/677d640667468f9f3fc5fe7c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d640667468f9f3fc5fe7c)

    HTTP response: 201| +|[01528-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01528-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d640df8016f90e7cbe439/download)
    [Logs](https://api.biosimulations.org/logs/677d640df8016f90e7cbe439?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d640df8016f90e7cbe439)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf P1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d640bf8016f90e7cbe429/download)
    [Logs](https://api.biosimulations.org/logs/677d640bf8016f90e7cbe429?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d640bf8016f90e7cbe429)

    HTTP response: 201| +|[01529-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01529-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d6413f8016f90e7cbe449/download)
    [Logs](https://api.biosimulations.org/logs/677d6413f8016f90e7cbe449?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6413f8016f90e7cbe449)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf P1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d64103e750b90a426815d/download)
    [Logs](https://api.biosimulations.org/logs/677d64103e750b90a426815d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64103e750b90a426815d)

    HTTP response: 201| +|[01530-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01530-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d641967468f9f3fc5fed2/download)
    [Logs](https://api.biosimulations.org/logs/677d641967468f9f3fc5fed2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d641967468f9f3fc5fed2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6416f8016f90e7cbe45c/download)
    [Logs](https://api.biosimulations.org/logs/677d6416f8016f90e7cbe45c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6416f8016f90e7cbe45c)

    HTTP response: 201| +|[01531-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01531-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6420f8016f90e7cbe47d/download)
    [Logs](https://api.biosimulations.org/logs/677d6420f8016f90e7cbe47d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6420f8016f90e7cbe47d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d641d67468f9f3fc5fedb/download)
    [Logs](https://api.biosimulations.org/logs/677d641d67468f9f3fc5fedb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d641d67468f9f3fc5fedb)

    HTTP response: 201| +|[01532-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01532-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64263e750b90a42681ae/download)
    [Logs](https://api.biosimulations.org/logs/677d64263e750b90a42681ae?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64263e750b90a42681ae)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d64233e750b90a426819b/download)
    [Logs](https://api.biosimulations.org/logs/677d64233e750b90a426819b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64233e750b90a426819b)

    HTTP response: 201| +|[01533-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01533-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d642c67468f9f3fc5ff12/download)
    [Logs](https://api.biosimulations.org/logs/677d642c67468f9f3fc5ff12?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d642c67468f9f3fc5ff12)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6429f8016f90e7cbe4a3/download)
    [Logs](https://api.biosimulations.org/logs/677d6429f8016f90e7cbe4a3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6429f8016f90e7cbe4a3)

    HTTP response: 201| +|[01534-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01534-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d64313e750b90a42681c7/download)
    [Logs](https://api.biosimulations.org/logs/677d64313e750b90a42681c7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64313e750b90a42681c7)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d642e3e750b90a42681b5/download)
    [Logs](https://api.biosimulations.org/logs/677d642e3e750b90a42681b5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d642e3e750b90a42681b5)

    HTTP response: 201| +|[01535-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01535-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d643767468f9f3fc5ff3b/download)
    [Logs](https://api.biosimulations.org/logs/677d643767468f9f3fc5ff3b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d643767468f9f3fc5ff3b)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d6433f8016f90e7cbe4cc/download)
    [Logs](https://api.biosimulations.org/logs/677d6433f8016f90e7cbe4cc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6433f8016f90e7cbe4cc)

    HTTP response: 201| +|[01536-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01536-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d643c67468f9f3fc5ff47/download)
    [Logs](https://api.biosimulations.org/logs/677d643c67468f9f3fc5ff47?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d643c67468f9f3fc5ff47)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(P1, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d643af8016f90e7cbe4da/download)
    [Logs](https://api.biosimulations.org/logs/677d643af8016f90e7cbe4da?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d643af8016f90e7cbe4da)

    HTTP response: 201| +|[01537-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01537-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6441f8016f90e7cbe4f2/download)
    [Logs](https://api.biosimulations.org/logs/677d6441f8016f90e7cbe4f2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6441f8016f90e7cbe4f2)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d643f67468f9f3fc5ff50/download)
    [Logs](https://api.biosimulations.org/logs/677d643f67468f9f3fc5ff50?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d643f67468f9f3fc5ff50)

    HTTP response: 201| +|[01538-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01538-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d644667468f9f3fc5ff62/download)
    [Logs](https://api.biosimulations.org/logs/677d644667468f9f3fc5ff62?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d644667468f9f3fc5ff62)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(S1, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d64443e750b90a4268215/download)
    [Logs](https://api.biosimulations.org/logs/677d64443e750b90a4268215?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64443e750b90a4268215)

    HTTP response: 201| +|[01539-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01539-sbml-l3v1.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(S1, 1.5)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d644bf8016f90e7cbe51a/download)
    [Logs](https://api.biosimulations.org/logs/677d644bf8016f90e7cbe51a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d644bf8016f90e7cbe51a)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(S1, 1.5)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d6449f8016f90e7cbe511/download)
    [Logs](https://api.biosimulations.org/logs/677d6449f8016f90e7cbe511?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6449f8016f90e7cbe511)

    HTTP response: 201| +|[01540-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01540-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d64513e750b90a4268240/download)
    [Logs](https://api.biosimulations.org/logs/677d64513e750b90a4268240?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64513e750b90a4268240)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d644ef8016f90e7cbe525/download)
    [Logs](https://api.biosimulations.org/logs/677d644ef8016f90e7cbe525?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d644ef8016f90e7cbe525)

    HTTP response: 201| +|[01541-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01541-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d6456f8016f90e7cbe54b/download)
    [Logs](https://api.biosimulations.org/logs/677d6456f8016f90e7cbe54b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6456f8016f90e7cbe54b)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d64533e750b90a426824d/download)
    [Logs](https://api.biosimulations.org/logs/677d64533e750b90a426824d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64533e750b90a426824d)

    HTTP response: 201| +|[01542-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01542-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d645c3e750b90a4268261/download)
    [Logs](https://api.biosimulations.org/logs/677d645c3e750b90a4268261?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d645c3e750b90a4268261)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d645967468f9f3fc5ffc0/download)
    [Logs](https://api.biosimulations.org/logs/677d645967468f9f3fc5ffc0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d645967468f9f3fc5ffc0)

    HTTP response: 201| +|[01543-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01543-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d6462f8016f90e7cbe573/download)
    [Logs](https://api.biosimulations.org/logs/677d6462f8016f90e7cbe573?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6462f8016f90e7cbe573)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unknown ASTNode type of 323, from rateOf S1 , at llvm::Value* rrllvm::ASTNodeCodeGen::codeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d645f67468f9f3fc5ffd4/download)
    [Logs](https://api.biosimulations.org/logs/677d645f67468f9f3fc5ffd4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d645f67468f9f3fc5ffd4)

    HTTP response: 201| +|[01544-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01544-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64683e750b90a42682b9/download)
    [Logs](https://api.biosimulations.org/logs/677d64683e750b90a42682b9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64683e750b90a42682b9)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d64653e750b90a4268295/download)
    [Logs](https://api.biosimulations.org/logs/677d64653e750b90a4268295?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64653e750b90a4268295)

    HTTP response: 201| +|[01545-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01545-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d646e3e750b90a42682bc/download)
    [Logs](https://api.biosimulations.org/logs/677d646e3e750b90a42682bc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d646e3e750b90a42682bc)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d646b67468f9f3fc6000a/download)
    [Logs](https://api.biosimulations.org/logs/677d646b67468f9f3fc6000a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d646b67468f9f3fc6000a)

    HTTP response: 201| +|[01546-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01546-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64753e750b90a42682d5/download)
    [Logs](https://api.biosimulations.org/logs/677d64753e750b90a42682d5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64753e750b90a42682d5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d647167468f9f3fc60029/download)
    [Logs](https://api.biosimulations.org/logs/677d647167468f9f3fc60029?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d647167468f9f3fc60029)

    HTTP response: 201| +|[01547-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01547-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d647af8016f90e7cbe5c6/download)
    [Logs](https://api.biosimulations.org/logs/677d647af8016f90e7cbe5c6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d647af8016f90e7cbe5c6)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6478f8016f90e7cbe5c1/download)
    [Logs](https://api.biosimulations.org/logs/677d6478f8016f90e7cbe5c1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6478f8016f90e7cbe5c1)

    HTTP response: 201| +|[01548-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01548-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6480f8016f90e7cbe5e3/download)
    [Logs](https://api.biosimulations.org/logs/677d6480f8016f90e7cbe5e3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6480f8016f90e7cbe5e3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d647d3e750b90a42682ee/download)
    [Logs](https://api.biosimulations.org/logs/677d647d3e750b90a42682ee?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d647d3e750b90a42682ee)

    HTTP response: 201| +|[01549-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01549-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6485f8016f90e7cbe600/download)
    [Logs](https://api.biosimulations.org/logs/677d6485f8016f90e7cbe600?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6485f8016f90e7cbe600)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6482f8016f90e7cbe5f2/download)
    [Logs](https://api.biosimulations.org/logs/677d6482f8016f90e7cbe5f2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6482f8016f90e7cbe5f2)

    HTTP response: 201| +|[01550-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01550-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d648cf8016f90e7cbe614/download)
    [Logs](https://api.biosimulations.org/logs/677d648cf8016f90e7cbe614?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d648cf8016f90e7cbe614)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6489f8016f90e7cbe60c/download)
    [Logs](https://api.biosimulations.org/logs/677d6489f8016f90e7cbe60c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6489f8016f90e7cbe60c)

    HTTP response: 201| +|[01551-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01551-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d649167468f9f3fc60094/download)
    [Logs](https://api.biosimulations.org/logs/677d649167468f9f3fc60094?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d649167468f9f3fc60094)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d648e67468f9f3fc6008f/download)
    [Logs](https://api.biosimulations.org/logs/677d648e67468f9f3fc6008f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d648e67468f9f3fc6008f)

    HTTP response: 201| +|[01552-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01552-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64963e750b90a426834c/download)
    [Logs](https://api.biosimulations.org/logs/677d64963e750b90a426834c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64963e750b90a426834c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6493f8016f90e7cbe640/download)
    [Logs](https://api.biosimulations.org/logs/677d6493f8016f90e7cbe640?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6493f8016f90e7cbe640)

    HTTP response: 201| +|[01553-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01553-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d649b3e750b90a4268366/download)
    [Logs](https://api.biosimulations.org/logs/677d649b3e750b90a4268366?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d649b3e750b90a4268366)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6498f8016f90e7cbe65c/download)
    [Logs](https://api.biosimulations.org/logs/677d6498f8016f90e7cbe65c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6498f8016f90e7cbe65c)

    HTTP response: 201| +|[01554-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01554-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64a13e750b90a426837d/download)
    [Logs](https://api.biosimulations.org/logs/677d64a13e750b90a426837d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64a13e750b90a426837d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d649e67468f9f3fc600c4/download)
    [Logs](https://api.biosimulations.org/logs/677d649e67468f9f3fc600c4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d649e67468f9f3fc600c4)

    HTTP response: 201| +|[01555-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01555-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64a63e750b90a4268396/download)
    [Logs](https://api.biosimulations.org/logs/677d64a63e750b90a4268396?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64a63e750b90a4268396)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d64a467468f9f3fc600d7/download)
    [Logs](https://api.biosimulations.org/logs/677d64a467468f9f3fc600d7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64a467468f9f3fc600d7)

    HTTP response: 201| +|[01556-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01556-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64ab67468f9f3fc600f8/download)
    [Logs](https://api.biosimulations.org/logs/677d64ab67468f9f3fc600f8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64ab67468f9f3fc600f8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d64a9f8016f90e7cbe68d/download)
    [Logs](https://api.biosimulations.org/logs/677d64a9f8016f90e7cbe68d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64a9f8016f90e7cbe68d)

    HTTP response: 201| +|[01557-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01557-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64b167468f9f3fc60111/download)
    [Logs](https://api.biosimulations.org/logs/677d64b167468f9f3fc60111?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64b167468f9f3fc60111)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d64af67468f9f3fc6010c/download)
    [Logs](https://api.biosimulations.org/logs/677d64af67468f9f3fc6010c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64af67468f9f3fc6010c)

    HTTP response: 201| +|[01558-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01558-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64b63e750b90a42683d4/download)
    [Logs](https://api.biosimulations.org/logs/677d64b63e750b90a42683d4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64b63e750b90a42683d4)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d64b4f8016f90e7cbe6c4/download)
    [Logs](https://api.biosimulations.org/logs/677d64b4f8016f90e7cbe6c4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64b4f8016f90e7cbe6c4)

    HTTP response: 201| +|[01559-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01559-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64bd67468f9f3fc60150/download)
    [Logs](https://api.biosimulations.org/logs/677d64bd67468f9f3fc60150?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64bd67468f9f3fc60150)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d64ba67468f9f3fc60139/download)
    [Logs](https://api.biosimulations.org/logs/677d64ba67468f9f3fc60139?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64ba67468f9f3fc60139)

    HTTP response: 201| +|[01560-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01560-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64c33e750b90a4268407/download)
    [Logs](https://api.biosimulations.org/logs/677d64c33e750b90a4268407?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64c33e750b90a4268407)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d64c067468f9f3fc60157/download)
    [Logs](https://api.biosimulations.org/logs/677d64c067468f9f3fc60157?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64c067468f9f3fc60157)

    HTTP response: 201| +|[01561-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01561-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64c967468f9f3fc60185/download)
    [Logs](https://api.biosimulations.org/logs/677d64c967468f9f3fc60185?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64c967468f9f3fc60185)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d64c667468f9f3fc60176/download)
    [Logs](https://api.biosimulations.org/logs/677d64c667468f9f3fc60176?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64c667468f9f3fc60176)

    HTTP response: 201| +|[01562-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01562-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64cef8016f90e7cbe74c/download)
    [Logs](https://api.biosimulations.org/logs/677d64cef8016f90e7cbe74c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64cef8016f90e7cbe74c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d64ccf8016f90e7cbe747/download)
    [Logs](https://api.biosimulations.org/logs/677d64ccf8016f90e7cbe747?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64ccf8016f90e7cbe747)

    HTTP response: 201| +|[01563-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01563-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64d567468f9f3fc601a6/download)
    [Logs](https://api.biosimulations.org/logs/677d64d567468f9f3fc601a6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64d567468f9f3fc601a6)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d64d23e750b90a4268437/download)
    [Logs](https://api.biosimulations.org/logs/677d64d23e750b90a4268437?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64d23e750b90a4268437)

    HTTP response: 201| +|[01564-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01564-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64db3e750b90a426845d/download)
    [Logs](https://api.biosimulations.org/logs/677d64db3e750b90a426845d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64db3e750b90a426845d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d64d8f8016f90e7cbe76b/download)
    [Logs](https://api.biosimulations.org/logs/677d64d8f8016f90e7cbe76b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64d8f8016f90e7cbe76b)

    HTTP response: 201| +|[01565-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01565-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64e067468f9f3fc601c4/download)
    [Logs](https://api.biosimulations.org/logs/677d64e067468f9f3fc601c4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64e067468f9f3fc601c4)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d64dd3e750b90a4268463/download)
    [Logs](https://api.biosimulations.org/logs/677d64dd3e750b90a4268463?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64dd3e750b90a4268463)

    HTTP response: 201| +|[01566-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01566-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64e63e750b90a426847b/download)
    [Logs](https://api.biosimulations.org/logs/677d64e63e750b90a426847b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64e63e750b90a426847b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d64e367468f9f3fc601d1/download)
    [Logs](https://api.biosimulations.org/logs/677d64e367468f9f3fc601d1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64e367468f9f3fc601d1)

    HTTP response: 201| +|[01567-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01567-sbml-l3v1.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = k + 3' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d64eb3e750b90a4268483/download)
    [Logs](https://api.biosimulations.org/logs/677d64eb3e750b90a4268483?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64eb3e750b90a4268483)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'k' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d64e93e750b90a426847e/download)
    [Logs](https://api.biosimulations.org/logs/677d64e93e750b90a426847e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64e93e750b90a426847e)

    HTTP response: 201| +|[01568-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01568-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64f1f8016f90e7cbe7b0/download)
    [Logs](https://api.biosimulations.org/logs/677d64f1f8016f90e7cbe7b0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64f1f8016f90e7cbe7b0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d64ef67468f9f3fc601e3/download)
    [Logs](https://api.biosimulations.org/logs/677d64ef67468f9f3fc601e3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64ef67468f9f3fc601e3)

    HTTP response: 201| +|[01569-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01569-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64f6f8016f90e7cbe7d5/download)
    [Logs](https://api.biosimulations.org/logs/677d64f6f8016f90e7cbe7d5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64f6f8016f90e7cbe7d5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d64f43e750b90a42684a1/download)
    [Logs](https://api.biosimulations.org/logs/677d64f43e750b90a42684a1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64f43e750b90a42684a1)

    HTTP response: 201| +|[01570-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01570-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d64fb67468f9f3fc6023a/download)
    [Logs](https://api.biosimulations.org/logs/677d64fb67468f9f3fc6023a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64fb67468f9f3fc6023a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d64f9f8016f90e7cbe7df/download)
    [Logs](https://api.biosimulations.org/logs/677d64f9f8016f90e7cbe7df?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64f9f8016f90e7cbe7df)

    HTTP response: 201| +|[01571-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01571-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d650167468f9f3fc60251/download)
    [Logs](https://api.biosimulations.org/logs/677d650167468f9f3fc60251?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d650167468f9f3fc60251)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d64fe67468f9f3fc60246/download)
    [Logs](https://api.biosimulations.org/logs/677d64fe67468f9f3fc60246?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d64fe67468f9f3fc60246)

    HTTP response: 201| +|[01572-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01572-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d650767468f9f3fc60264/download)
    [Logs](https://api.biosimulations.org/logs/677d650767468f9f3fc60264?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d650767468f9f3fc60264)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d65043e750b90a42684ee/download)
    [Logs](https://api.biosimulations.org/logs/677d65043e750b90a42684ee?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65043e750b90a42684ee)

    HTTP response: 201| +|[01573-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01573-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d650c67468f9f3fc60276/download)
    [Logs](https://api.biosimulations.org/logs/677d650c67468f9f3fc60276?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d650c67468f9f3fc60276)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d650a3e750b90a4268509/download)
    [Logs](https://api.biosimulations.org/logs/677d650a3e750b90a4268509?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d650a3e750b90a4268509)

    HTTP response: 201| +|[01574-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01574-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d651167468f9f3fc60292/download)
    [Logs](https://api.biosimulations.org/logs/677d651167468f9f3fc60292?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d651167468f9f3fc60292)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d650ff8016f90e7cbe839/download)
    [Logs](https://api.biosimulations.org/logs/677d650ff8016f90e7cbe839?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d650ff8016f90e7cbe839)

    HTTP response: 201| +|[01575-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01575-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = k1 - k2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6517f8016f90e7cbe870/download)
    [Logs](https://api.biosimulations.org/logs/677d6517f8016f90e7cbe870?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6517f8016f90e7cbe870)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'k2' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d651467468f9f3fc602ab/download)
    [Logs](https://api.biosimulations.org/logs/677d651467468f9f3fc602ab?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d651467468f9f3fc602ab)

    HTTP response: 201| +|[01576-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01576-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = k1 - k2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d65203e750b90a4268566/download)
    [Logs](https://api.biosimulations.org/logs/677d65203e750b90a4268566?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65203e750b90a4268566)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'k2' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d651c3e750b90a4268558/download)
    [Logs](https://api.biosimulations.org/logs/677d651c3e750b90a4268558?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d651c3e750b90a4268558)

    HTTP response: 201| +|[01577-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01577-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = 10 - k1 - k2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d652967468f9f3fc602f9/download)
    [Logs](https://api.biosimulations.org/logs/677d652967468f9f3fc602f9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d652967468f9f3fc602f9)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'k2' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d65253e750b90a4268577/download)
    [Logs](https://api.biosimulations.org/logs/677d65253e750b90a4268577?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65253e750b90a4268577)

    HTTP response: 201| +|[01578-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01578-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = 10 - k1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d652e67468f9f3fc60305/download)
    [Logs](https://api.biosimulations.org/logs/677d652e67468f9f3fc60305?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d652e67468f9f3fc60305)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d652c67468f9f3fc602ff/download)
    [Logs](https://api.biosimulations.org/logs/677d652c67468f9f3fc602ff?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d652c67468f9f3fc602ff)

    HTTP response: 201| +|[01579-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01579-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = k1 - k2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6535f8016f90e7cbe8da/download)
    [Logs](https://api.biosimulations.org/logs/677d6535f8016f90e7cbe8da?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6535f8016f90e7cbe8da)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'k2' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d6532f8016f90e7cbe8d4/download)
    [Logs](https://api.biosimulations.org/logs/677d6532f8016f90e7cbe8d4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6532f8016f90e7cbe8d4)

    HTTP response: 201| +|[01580-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01580-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d653cf8016f90e7cbe8f3/download)
    [Logs](https://api.biosimulations.org/logs/677d653cf8016f90e7cbe8f3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d653cf8016f90e7cbe8f3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d653967468f9f3fc6031b/download)
    [Logs](https://api.biosimulations.org/logs/677d653967468f9f3fc6031b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d653967468f9f3fc6031b)

    HTTP response: 201| +|[01581-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01581-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d65413e750b90a42685d3/download)
    [Logs](https://api.biosimulations.org/logs/677d65413e750b90a42685d3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65413e750b90a42685d3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d653f67468f9f3fc6032b/download)
    [Logs](https://api.biosimulations.org/logs/677d653f67468f9f3fc6032b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d653f67468f9f3fc6032b)

    HTTP response: 201| +|[01582-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01582-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d654667468f9f3fc60348/download)
    [Logs](https://api.biosimulations.org/logs/677d654667468f9f3fc60348?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d654667468f9f3fc60348)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6544f8016f90e7cbe90e/download)
    [Logs](https://api.biosimulations.org/logs/677d6544f8016f90e7cbe90e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6544f8016f90e7cbe90e)

    HTTP response: 201| +|[01583-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01583-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d654ef8016f90e7cbe934/download)
    [Logs](https://api.biosimulations.org/logs/677d654ef8016f90e7cbe934?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d654ef8016f90e7cbe934)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d654b3e750b90a42685e2/download)
    [Logs](https://api.biosimulations.org/logs/677d654b3e750b90a42685e2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d654b3e750b90a42685e2)

    HTTP response: 201| +|[01584-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01584-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6554f8016f90e7cbe94e/download)
    [Logs](https://api.biosimulations.org/logs/677d6554f8016f90e7cbe94e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6554f8016f90e7cbe94e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d655167468f9f3fc6035e/download)
    [Logs](https://api.biosimulations.org/logs/677d655167468f9f3fc6035e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d655167468f9f3fc6035e)

    HTTP response: 201| +|[01585-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01585-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d655af8016f90e7cbe964/download)
    [Logs](https://api.biosimulations.org/logs/677d655af8016f90e7cbe964?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d655af8016f90e7cbe964)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d65573e750b90a426860c/download)
    [Logs](https://api.biosimulations.org/logs/677d65573e750b90a426860c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65573e750b90a426860c)

    HTTP response: 201| +|[01586-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01586-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6560f8016f90e7cbe987/download)
    [Logs](https://api.biosimulations.org/logs/677d6560f8016f90e7cbe987?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6560f8016f90e7cbe987)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d655d3e750b90a4268616/download)
    [Logs](https://api.biosimulations.org/logs/677d655d3e750b90a4268616?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d655d3e750b90a4268616)

    HTTP response: 201| +|[01587-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01587-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d656667468f9f3fc603ae/download)
    [Logs](https://api.biosimulations.org/logs/677d656667468f9f3fc603ae?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d656667468f9f3fc603ae)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d65633e750b90a4268631/download)
    [Logs](https://api.biosimulations.org/logs/677d65633e750b90a4268631?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65633e750b90a4268631)

    HTTP response: 201| +|[01588-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01588-sbml-l3v2.xml)|pass|pass|pass|
    skippedCase is skipped because it leads to a float error when trying to run it in tellurium natively, which leads to reset errors in subsequent cases that would otherwise pass.
    |True|
    pass[Download](https://api.biosimulations.org/results/677d656d67468f9f3fc603b4/download)
    [Logs](https://api.biosimulations.org/logs/677d656d67468f9f3fc603b4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d656d67468f9f3fc603b4)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6569f8016f90e7cbe99f/download)
    [Logs](https://api.biosimulations.org/logs/677d6569f8016f90e7cbe99f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6569f8016f90e7cbe99f)

    HTTP response: 201| +|[01589-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01589-sbml-l3v2.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = Q + R - S' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6573f8016f90e7cbe9c6/download)
    [Logs](https://api.biosimulations.org/logs/677d6573f8016f90e7cbe9c6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6573f8016f90e7cbe9c6)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Global parameter 'S' is missing a value. While roadrunner gives species a default value of zero, and compartments a default value of one, it requires parameters to be initialized. Set one by giving it a value, initial assignment, or an assignment rule.```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d6570f8016f90e7cbe9ae/download)
    [Logs](https://api.biosimulations.org/logs/677d6570f8016f90e7cbe9ae?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6570f8016f90e7cbe9ae)

    HTTP response: 201| +|[01590-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01590-sbml-l3v2.xml)|pass|pass|pass|
    skippedCase is skipped because it leads to a float error when trying to run it in tellurium natively, which leads to reset errors in subsequent cases that would otherwise pass.
    |True|
    pass[Download](https://api.biosimulations.org/results/677d657a67468f9f3fc603fb/download)
    [Logs](https://api.biosimulations.org/logs/677d657a67468f9f3fc603fb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d657a67468f9f3fc603fb)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d657867468f9f3fc603e7/download)
    [Logs](https://api.biosimulations.org/logs/677d657867468f9f3fc603e7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d657867468f9f3fc603e7)

    HTTP response: 201| +|[01591-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01591-sbml-l3v2.xml)|pass|pass|pass|
    skippedCase is skipped because it leads to a float error when trying to run it in tellurium natively, which leads to reset errors in subsequent cases that would otherwise pass.
    |True|
    pass[Download](https://api.biosimulations.org/results/677d65803e750b90a4268683/download)
    [Logs](https://api.biosimulations.org/logs/677d65803e750b90a4268683?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65803e750b90a4268683)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d657e67468f9f3fc6040e/download)
    [Logs](https://api.biosimulations.org/logs/677d657e67468f9f3fc6040e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d657e67468f9f3fc6040e)

    HTTP response: 201| +|[01592-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01592-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(reset, 0.005)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6586f8016f90e7cbea02/download)
    [Logs](https://api.biosimulations.org/logs/677d6586f8016f90e7cbea02?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6586f8016f90e7cbea02)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(reset, 0.005)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d6584f8016f90e7cbe9ff/download)
    [Logs](https://api.biosimulations.org/logs/677d6584f8016f90e7cbe9ff?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6584f8016f90e7cbe9ff)

    HTTP response: 201| +|[01593-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01593-sbml-l3v2.xml)|pass|pass|pass|
    delay Unable to support delay differential equations. The function 'delay(Q, 1)' is not supported., at ?delayExprCodeGen@ASTNodeCodeGen@rrllvm@@AEAAPEAVValue@llvm@@PEBVASTNode@libsbml@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d658b67468f9f3fc60440/download)
    [Logs](https://api.biosimulations.org/logs/677d658b67468f9f3fc60440?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d658b67468f9f3fc60440)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Unable to support delay differential equations. The function 'delay(Q, 1)' is not supported., at llvm::Value* rrllvm::ASTNodeCodeGen::delayExprCodeGen(const libsbml::ASTNode*)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d6589f8016f90e7cbea14/download)
    [Logs](https://api.biosimulations.org/logs/677d6589f8016f90e7cbea14?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6589f8016f90e7cbea14)

    HTTP response: 201| +|[01594-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01594-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6591f8016f90e7cbea29/download)
    [Logs](https://api.biosimulations.org/logs/677d6591f8016f90e7cbea29?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6591f8016f90e7cbea29)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d658f3e750b90a42686c5/download)
    [Logs](https://api.biosimulations.org/logs/677d658f3e750b90a42686c5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d658f3e750b90a42686c5)

    HTTP response: 201| +|[01595-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01595-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d65983e750b90a42686e2/download)
    [Logs](https://api.biosimulations.org/logs/677d65983e750b90a42686e2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65983e750b90a42686e2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d659567468f9f3fc60453/download)
    [Logs](https://api.biosimulations.org/logs/677d659567468f9f3fc60453?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d659567468f9f3fc60453)

    HTTP response: 201| +|[01596-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01596-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d659f67468f9f3fc6047e/download)
    [Logs](https://api.biosimulations.org/logs/677d659f67468f9f3fc6047e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d659f67468f9f3fc6047e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d659c67468f9f3fc60478/download)
    [Logs](https://api.biosimulations.org/logs/677d659c67468f9f3fc60478?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d659c67468f9f3fc60478)

    HTTP response: 201| +|[01597-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01597-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d65a7f8016f90e7cbea82/download)
    [Logs](https://api.biosimulations.org/logs/677d65a7f8016f90e7cbea82?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65a7f8016f90e7cbea82)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d65a467468f9f3fc6048f/download)
    [Logs](https://api.biosimulations.org/logs/677d65a467468f9f3fc6048f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65a467468f9f3fc6048f)

    HTTP response: 201| +|[01598-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01598-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d65ae3e750b90a4268726/download)
    [Logs](https://api.biosimulations.org/logs/677d65ae3e750b90a4268726?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65ae3e750b90a4268726)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d65ab67468f9f3fc604b3/download)
    [Logs](https://api.biosimulations.org/logs/677d65ab67468f9f3fc604b3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65ab67468f9f3fc604b3)

    HTTP response: 201| +|[01599-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01599-sbml-l3v2.xml)|pass|pass|pass|
    skippedCase is skipped because it leads to a float error when trying to run it in tellurium natively, which leads to reset errors in subsequent cases that would otherwise pass.
    |True|
    pass[Download](https://api.biosimulations.org/results/677d65b867468f9f3fc604d4/download)
    [Logs](https://api.biosimulations.org/logs/677d65b867468f9f3fc604d4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65b867468f9f3fc604d4)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d65b2f8016f90e7cbeaa2/download)
    [Logs](https://api.biosimulations.org/logs/677d65b2f8016f90e7cbeaa2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65b2f8016f90e7cbeaa2)

    HTTP response: 201| +|[01600-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01600-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d65bef8016f90e7cbeab6/download)
    [Logs](https://api.biosimulations.org/logs/677d65bef8016f90e7cbeab6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65bef8016f90e7cbeab6)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d65bb67468f9f3fc604e0/download)
    [Logs](https://api.biosimulations.org/logs/677d65bb67468f9f3fc604e0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65bb67468f9f3fc604e0)

    HTTP response: 201| +|[01601-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01601-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d65c467468f9f3fc604ed/download)
    [Logs](https://api.biosimulations.org/logs/677d65c467468f9f3fc604ed?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65c467468f9f3fc604ed)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d65c167468f9f3fc604e8/download)
    [Logs](https://api.biosimulations.org/logs/677d65c167468f9f3fc604e8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65c167468f9f3fc604e8)

    HTTP response: 201| +|[01602-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01602-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d65ca67468f9f3fc604fe/download)
    [Logs](https://api.biosimulations.org/logs/677d65ca67468f9f3fc604fe?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65ca67468f9f3fc604fe)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d65c73e750b90a4268765/download)
    [Logs](https://api.biosimulations.org/logs/677d65c73e750b90a4268765?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65c73e750b90a4268765)

    HTTP response: 201| +|[01603-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01603-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d65cf67468f9f3fc60513/download)
    [Logs](https://api.biosimulations.org/logs/677d65cf67468f9f3fc60513?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65cf67468f9f3fc60513)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d65cd3e750b90a4268774/download)
    [Logs](https://api.biosimulations.org/logs/677d65cd3e750b90a4268774?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65cd3e750b90a4268774)

    HTTP response: 201| +|[01604-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01604-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d65d43e750b90a426878d/download)
    [Logs](https://api.biosimulations.org/logs/677d65d43e750b90a426878d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65d43e750b90a426878d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d65d23e750b90a4268784/download)
    [Logs](https://api.biosimulations.org/logs/677d65d23e750b90a4268784?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65d23e750b90a4268784)

    HTTP response: 201| +|[01605-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01605-sbml-l3v2.xml)|pass|pass|pass|
    skippedCase is skipped because it leads to a float error when trying to run it in tellurium natively, which leads to reset errors in subsequent cases that would otherwise pass.
    |True|
    pass[Download](https://api.biosimulations.org/results/677d65daf8016f90e7cbeb2d/download)
    [Logs](https://api.biosimulations.org/logs/677d65daf8016f90e7cbeb2d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65daf8016f90e7cbeb2d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d65d7f8016f90e7cbeb25/download)
    [Logs](https://api.biosimulations.org/logs/677d65d7f8016f90e7cbeb25?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65d7f8016f90e7cbeb25)

    HTTP response: 201| +|[01606-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01606-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d65e167468f9f3fc6054a/download)
    [Logs](https://api.biosimulations.org/logs/677d65e167468f9f3fc6054a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65e167468f9f3fc6054a)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d65de67468f9f3fc60544/download)
    [Logs](https://api.biosimulations.org/logs/677d65de67468f9f3fc60544?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65de67468f9f3fc60544)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01607-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01607-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d65e8f8016f90e7cbeb5a/download)
    [Logs](https://api.biosimulations.org/logs/677d65e8f8016f90e7cbeb5a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65e8f8016f90e7cbeb5a)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d65e43e750b90a42687d6/download)
    [Logs](https://api.biosimulations.org/logs/677d65e43e750b90a42687d6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65e43e750b90a42687d6)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01608-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01608-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d65ee67468f9f3fc6058f/download)
    [Logs](https://api.biosimulations.org/logs/677d65ee67468f9f3fc6058f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65ee67468f9f3fc6058f)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d65eb3e750b90a42687f4/download)
    [Logs](https://api.biosimulations.org/logs/677d65eb3e750b90a42687f4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65eb3e750b90a42687f4)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01609-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01609-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d65f4f8016f90e7cbeb82/download)
    [Logs](https://api.biosimulations.org/logs/677d65f4f8016f90e7cbeb82?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65f4f8016f90e7cbeb82)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d65f13e750b90a4268805/download)
    [Logs](https://api.biosimulations.org/logs/677d65f13e750b90a4268805?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65f13e750b90a4268805)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01610-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01610-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d65f9f8016f90e7cbeb96/download)
    [Logs](https://api.biosimulations.org/logs/677d65f9f8016f90e7cbeb96?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65f9f8016f90e7cbeb96)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d65f63e750b90a426881c/download)
    [Logs](https://api.biosimulations.org/logs/677d65f63e750b90a426881c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65f63e750b90a426881c)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01611-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01611-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d65fff8016f90e7cbebab/download)
    [Logs](https://api.biosimulations.org/logs/677d65fff8016f90e7cbebab?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65fff8016f90e7cbebab)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d65fcf8016f90e7cbeba3/download)
    [Logs](https://api.biosimulations.org/logs/677d65fcf8016f90e7cbeba3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d65fcf8016f90e7cbeba3)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01612-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01612-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6604f8016f90e7cbebbb/download)
    [Logs](https://api.biosimulations.org/logs/677d6604f8016f90e7cbebbb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6604f8016f90e7cbebbb)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d660167468f9f3fc605dc/download)
    [Logs](https://api.biosimulations.org/logs/677d660167468f9f3fc605dc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d660167468f9f3fc605dc)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01613-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01613-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d660a67468f9f3fc6060d/download)
    [Logs](https://api.biosimulations.org/logs/677d660a67468f9f3fc6060d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d660a67468f9f3fc6060d)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6608f8016f90e7cbebc3/download)
    [Logs](https://api.biosimulations.org/logs/677d6608f8016f90e7cbebc3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6608f8016f90e7cbebc3)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01614-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01614-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6610f8016f90e7cbebdc/download)
    [Logs](https://api.biosimulations.org/logs/677d6610f8016f90e7cbebdc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6610f8016f90e7cbebdc)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d660e67468f9f3fc60612/download)
    [Logs](https://api.biosimulations.org/logs/677d660e67468f9f3fc60612?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d660e67468f9f3fc60612)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01615-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01615-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d66183e750b90a426888c/download)
    [Logs](https://api.biosimulations.org/logs/677d66183e750b90a426888c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66183e750b90a426888c)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6614f8016f90e7cbebed/download)
    [Logs](https://api.biosimulations.org/logs/677d6614f8016f90e7cbebed?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6614f8016f90e7cbebed)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01616-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01616-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d661e3e750b90a426889e/download)
    [Logs](https://api.biosimulations.org/logs/677d661e3e750b90a426889e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d661e3e750b90a426889e)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d661b3e750b90a4268890/download)
    [Logs](https://api.biosimulations.org/logs/677d661b3e750b90a4268890?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d661b3e750b90a4268890)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01617-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01617-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6625f8016f90e7cbec20/download)
    [Logs](https://api.biosimulations.org/logs/677d6625f8016f90e7cbec20?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6625f8016f90e7cbec20)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d662167468f9f3fc6064e/download)
    [Logs](https://api.biosimulations.org/logs/677d662167468f9f3fc6064e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d662167468f9f3fc6064e)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01618-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01618-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d662a3e750b90a42688c6/download)
    [Logs](https://api.biosimulations.org/logs/677d662a3e750b90a42688c6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d662a3e750b90a42688c6)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d66273e750b90a42688be/download)
    [Logs](https://api.biosimulations.org/logs/677d66273e750b90a42688be?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66273e750b90a42688be)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01619-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01619-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d663067468f9f3fc60674/download)
    [Logs](https://api.biosimulations.org/logs/677d663067468f9f3fc60674?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d663067468f9f3fc60674)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d662df8016f90e7cbec49/download)
    [Logs](https://api.biosimulations.org/logs/677d662df8016f90e7cbec49?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d662df8016f90e7cbec49)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01620-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01620-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d663667468f9f3fc60687/download)
    [Logs](https://api.biosimulations.org/logs/677d663667468f9f3fc60687?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d663667468f9f3fc60687)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6633f8016f90e7cbec57/download)
    [Logs](https://api.biosimulations.org/logs/677d6633f8016f90e7cbec57?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6633f8016f90e7cbec57)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01621-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01621-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d663e67468f9f3fc606ab/download)
    [Logs](https://api.biosimulations.org/logs/677d663e67468f9f3fc606ab?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d663e67468f9f3fc606ab)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d663967468f9f3fc60693/download)
    [Logs](https://api.biosimulations.org/logs/677d663967468f9f3fc60693?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d663967468f9f3fc60693)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01622-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01622-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d664467468f9f3fc606cb/download)
    [Logs](https://api.biosimulations.org/logs/677d664467468f9f3fc606cb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d664467468f9f3fc606cb)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d664167468f9f3fc606b9/download)
    [Logs](https://api.biosimulations.org/logs/677d664167468f9f3fc606b9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d664167468f9f3fc606b9)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01623-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01623-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d66493e750b90a4268929/download)
    [Logs](https://api.biosimulations.org/logs/677d66493e750b90a4268929?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66493e750b90a4268929)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d66463e750b90a426891e/download)
    [Logs](https://api.biosimulations.org/logs/677d66463e750b90a426891e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66463e750b90a426891e)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01624-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01624-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d664f3e750b90a4268936/download)
    [Logs](https://api.biosimulations.org/logs/677d664f3e750b90a4268936?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d664f3e750b90a4268936)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d664cf8016f90e7cbecab/download)
    [Logs](https://api.biosimulations.org/logs/677d664cf8016f90e7cbecab?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d664cf8016f90e7cbecab)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01625-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01625-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d66543e750b90a4268941/download)
    [Logs](https://api.biosimulations.org/logs/677d66543e750b90a4268941?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66543e750b90a4268941)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d665267468f9f3fc606f9/download)
    [Logs](https://api.biosimulations.org/logs/677d665267468f9f3fc606f9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d665267468f9f3fc606f9)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01626-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01626-sbml-l3v2.xml)|pass|pass|pass|
    stochiometry Mutable stochiometry for species which appear multiple times in a single reaction is not currently supported, species reference id: Q, at ?loadSymbolValue@ModelDataLoadSymbolResolver@rrllvm@@UEAAPEAVValue@llvm@@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@AEBV?$ArrayRef@PEAVValue@llvm@@@4@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d665b3e750b90a4268959/download)
    [Logs](https://api.biosimulations.org/logs/677d665b3e750b90a4268959?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d665b3e750b90a4268959)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Mutable stochiometry for species which appear multiple times in a single reaction is not currently supported, species reference id: Q, at virtual llvm::Value* rrllvm::ModelDataLoadSymbolResolver::loadSymbolValue(const string&, const llvm::ArrayRef&)```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d665867468f9f3fc60701/download)
    [Logs](https://api.biosimulations.org/logs/677d665867468f9f3fc60701?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d665867468f9f3fc60701)

    HTTP response: 201| +|[01627-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01627-sbml-l3v2.xml)|pass|pass|pass|
    skippedCase is skipped because it leads to a float error when trying to run it in tellurium natively, which leads to reset errors in subsequent cases that would otherwise pass.
    |True|
    pass[Download](https://api.biosimulations.org/results/677d666167468f9f3fc6071f/download)
    [Logs](https://api.biosimulations.org/logs/677d666167468f9f3fc6071f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d666167468f9f3fc6071f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d665ef8016f90e7cbece6/download)
    [Logs](https://api.biosimulations.org/logs/677d665ef8016f90e7cbece6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d665ef8016f90e7cbece6)

    HTTP response: 201| +|[01628-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01628-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d66673e750b90a42689a8/download)
    [Logs](https://api.biosimulations.org/logs/677d66673e750b90a42689a8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66673e750b90a42689a8)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d666567468f9f3fc6072c/download)
    [Logs](https://api.biosimulations.org/logs/677d666567468f9f3fc6072c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d666567468f9f3fc6072c)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01629-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01629-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d666ef8016f90e7cbed17/download)
    [Logs](https://api.biosimulations.org/logs/677d666ef8016f90e7cbed17?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d666ef8016f90e7cbed17)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d666af8016f90e7cbed0c/download)
    [Logs](https://api.biosimulations.org/logs/677d666af8016f90e7cbed0c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d666af8016f90e7cbed0c)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01630-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01630-sbml-l3v2.xml)|pass|pass|pass|
    other 'NoneType' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d66733e750b90a42689c4/download)
    [Logs](https://api.biosimulations.org/logs/677d66733e750b90a42689c4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66733e750b90a42689c4)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: Algorithm substitution for "flux balance analysis" (http://www.biomodels.net/kisao/KISAO#KISAO_0000437) for policy SIMILAR_VARIABLES is not supported.```

    Exception type: ```CombineArchiveExecutionError```|
    FAIL[Download](https://api.biosimulations.org/results/677d667167468f9f3fc6076f/download)
    [Logs](https://api.biosimulations.org/logs/677d667167468f9f3fc6076f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d667167468f9f3fc6076f)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: :No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy```

    Exception type: ```CombineArchiveExecutionError```| +|[01631-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01631-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d667967468f9f3fc60780/download)
    [Logs](https://api.biosimulations.org/logs/677d667967468f9f3fc60780?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d667967468f9f3fc60780)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d66773e750b90a42689cb/download)
    [Logs](https://api.biosimulations.org/logs/677d66773e750b90a42689cb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66773e750b90a42689cb)

    HTTP response: 201| +|[01632-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01632-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d667ff8016f90e7cbed56/download)
    [Logs](https://api.biosimulations.org/logs/677d667ff8016f90e7cbed56?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d667ff8016f90e7cbed56)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d667d3e750b90a42689e1/download)
    [Logs](https://api.biosimulations.org/logs/677d667d3e750b90a42689e1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d667d3e750b90a42689e1)

    HTTP response: 201| +|[01633-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01633-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6685f8016f90e7cbed6c/download)
    [Logs](https://api.biosimulations.org/logs/677d6685f8016f90e7cbed6c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6685f8016f90e7cbed6c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d668267468f9f3fc607b6/download)
    [Logs](https://api.biosimulations.org/logs/677d668267468f9f3fc607b6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d668267468f9f3fc607b6)

    HTTP response: 201| +|[01634-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01634-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d668b67468f9f3fc607c2/download)
    [Logs](https://api.biosimulations.org/logs/677d668b67468f9f3fc607c2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d668b67468f9f3fc607c2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d66883e750b90a42689ff/download)
    [Logs](https://api.biosimulations.org/logs/677d66883e750b90a42689ff?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66883e750b90a42689ff)

    HTTP response: 201| +|[01635-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01635-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d66913e750b90a4268a27/download)
    [Logs](https://api.biosimulations.org/logs/677d66913e750b90a4268a27?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66913e750b90a4268a27)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d668ef8016f90e7cbed91/download)
    [Logs](https://api.biosimulations.org/logs/677d668ef8016f90e7cbed91?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d668ef8016f90e7cbed91)

    HTTP response: 201| +|[01636-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01636-sbml-l2v5.xml)|pass|pass|pass|
    SpeciesRef S1_stoich is not a named SpeciesReference, at ?getNamedSpeciesReferenceInfo@LLVMModelDataSymbols@rrllvm@@QEAAAEBUSpeciesReferenceInfo@12@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d66963e750b90a4268a36/download)
    [Logs](https://api.biosimulations.org/logs/677d66963e750b90a4268a36?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66963e750b90a4268a36)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: S1_stoich is not a named SpeciesReference, at const rrllvm::LLVMModelDataSymbols::SpeciesReferenceInfo& rrllvm::LLVMModelDataSymbols::getNamedSpeciesReferenceInfo(const string&) const```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d66943e750b90a4268a2c/download)
    [Logs](https://api.biosimulations.org/logs/677d66943e750b90a4268a2c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66943e750b90a4268a2c)

    HTTP response: 201| +|[01637-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01637-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d669cf8016f90e7cbedc7/download)
    [Logs](https://api.biosimulations.org/logs/677d669cf8016f90e7cbedc7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d669cf8016f90e7cbedc7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d66993e750b90a4268a3d/download)
    [Logs](https://api.biosimulations.org/logs/677d66993e750b90a4268a3d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66993e750b90a4268a3d)

    HTTP response: 201| +|[01638-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01638-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d66a2f8016f90e7cbede9/download)
    [Logs](https://api.biosimulations.org/logs/677d66a2f8016f90e7cbede9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66a2f8016f90e7cbede9)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d669f67468f9f3fc60811/download)
    [Logs](https://api.biosimulations.org/logs/677d669f67468f9f3fc60811?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d669f67468f9f3fc60811)

    HTTP response: 201| +|[01639-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01639-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d66a767468f9f3fc60825/download)
    [Logs](https://api.biosimulations.org/logs/677d66a767468f9f3fc60825?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66a767468f9f3fc60825)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d66a467468f9f3fc6081d/download)
    [Logs](https://api.biosimulations.org/logs/677d66a467468f9f3fc6081d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66a467468f9f3fc6081d)

    HTTP response: 201| +|[01640-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01640-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d66ad3e750b90a4268aa2/download)
    [Logs](https://api.biosimulations.org/logs/677d66ad3e750b90a4268aa2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66ad3e750b90a4268aa2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d66aa3e750b90a4268a90/download)
    [Logs](https://api.biosimulations.org/logs/677d66aa3e750b90a4268a90?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66aa3e750b90a4268a90)

    HTTP response: 201| +|[01641-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01641-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d66b33e750b90a4268ab8/download)
    [Logs](https://api.biosimulations.org/logs/677d66b33e750b90a4268ab8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66b33e750b90a4268ab8)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d66b067468f9f3fc60841/download)
    [Logs](https://api.biosimulations.org/logs/677d66b067468f9f3fc60841?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66b067468f9f3fc60841)

    HTTP response: 201| +|[01642-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01642-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d66b8f8016f90e7cbee2e/download)
    [Logs](https://api.biosimulations.org/logs/677d66b8f8016f90e7cbee2e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66b8f8016f90e7cbee2e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d66b63e750b90a4268ac3/download)
    [Logs](https://api.biosimulations.org/logs/677d66b63e750b90a4268ac3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66b63e750b90a4268ac3)

    HTTP response: 201| +|[01643-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01643-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d66be67468f9f3fc60878/download)
    [Logs](https://api.biosimulations.org/logs/677d66be67468f9f3fc60878?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66be67468f9f3fc60878)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d66bb3e750b90a4268add/download)
    [Logs](https://api.biosimulations.org/logs/677d66bb3e750b90a4268add?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66bb3e750b90a4268add)

    HTTP response: 201| +|[01644-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01644-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d66c3f8016f90e7cbee59/download)
    [Logs](https://api.biosimulations.org/logs/677d66c3f8016f90e7cbee59?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66c3f8016f90e7cbee59)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d66c167468f9f3fc60886/download)
    [Logs](https://api.biosimulations.org/logs/677d66c167468f9f3fc60886?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66c167468f9f3fc60886)

    HTTP response: 201| +|[01645-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01645-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d66c967468f9f3fc6089f/download)
    [Logs](https://api.biosimulations.org/logs/677d66c967468f9f3fc6089f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66c967468f9f3fc6089f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d66c767468f9f3fc60891/download)
    [Logs](https://api.biosimulations.org/logs/677d66c767468f9f3fc60891?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66c767468f9f3fc60891)

    HTTP response: 201| +|[01646-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01646-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d66ce3e750b90a4268b30/download)
    [Logs](https://api.biosimulations.org/logs/677d66ce3e750b90a4268b30?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66ce3e750b90a4268b30)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d66cc3e750b90a4268b2b/download)
    [Logs](https://api.biosimulations.org/logs/677d66cc3e750b90a4268b2b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66cc3e750b90a4268b2b)

    HTTP response: 201| +|[01647-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01647-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d66d467468f9f3fc608e0/download)
    [Logs](https://api.biosimulations.org/logs/677d66d467468f9f3fc608e0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66d467468f9f3fc608e0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d66d2f8016f90e7cbee98/download)
    [Logs](https://api.biosimulations.org/logs/677d66d2f8016f90e7cbee98?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66d2f8016f90e7cbee98)

    HTTP response: 201| +|[01648-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01648-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d66d93e750b90a4268b6e/download)
    [Logs](https://api.biosimulations.org/logs/677d66d93e750b90a4268b6e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66d93e750b90a4268b6e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d66d7f8016f90e7cbeea9/download)
    [Logs](https://api.biosimulations.org/logs/677d66d7f8016f90e7cbeea9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66d7f8016f90e7cbeea9)

    HTTP response: 201| +|[01649-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01649-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d66de67468f9f3fc608f4/download)
    [Logs](https://api.biosimulations.org/logs/677d66de67468f9f3fc608f4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66de67468f9f3fc608f4)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d66dc67468f9f3fc608f1/download)
    [Logs](https://api.biosimulations.org/logs/677d66dc67468f9f3fc608f1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66dc67468f9f3fc608f1)

    HTTP response: 201| +|[01650-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01650-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d66e367468f9f3fc60920/download)
    [Logs](https://api.biosimulations.org/logs/677d66e367468f9f3fc60920?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66e367468f9f3fc60920)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d66e13e750b90a4268b8f/download)
    [Logs](https://api.biosimulations.org/logs/677d66e13e750b90a4268b8f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66e13e750b90a4268b8f)

    HTTP response: 201| +|[01651-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01651-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d66e93e750b90a4268ba4/download)
    [Logs](https://api.biosimulations.org/logs/677d66e93e750b90a4268ba4?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66e93e750b90a4268ba4)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d66e7f8016f90e7cbeeea/download)
    [Logs](https://api.biosimulations.org/logs/677d66e7f8016f90e7cbeeea?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66e7f8016f90e7cbeeea)

    HTTP response: 201| +|[01652-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01652-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d66eef8016f90e7cbef07/download)
    [Logs](https://api.biosimulations.org/logs/677d66eef8016f90e7cbef07?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66eef8016f90e7cbef07)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d66ecf8016f90e7cbeef3/download)
    [Logs](https://api.biosimulations.org/logs/677d66ecf8016f90e7cbeef3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66ecf8016f90e7cbeef3)

    HTTP response: 201| +|[01653-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01653-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d66f33e750b90a4268bc9/download)
    [Logs](https://api.biosimulations.org/logs/677d66f33e750b90a4268bc9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66f33e750b90a4268bc9)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d66f167468f9f3fc6095b/download)
    [Logs](https://api.biosimulations.org/logs/677d66f167468f9f3fc6095b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66f167468f9f3fc6095b)

    HTTP response: 201| +|[01654-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01654-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d66f9f8016f90e7cbef31/download)
    [Logs](https://api.biosimulations.org/logs/677d66f9f8016f90e7cbef31?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66f9f8016f90e7cbef31)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d66f667468f9f3fc6096f/download)
    [Logs](https://api.biosimulations.org/logs/677d66f667468f9f3fc6096f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d66f667468f9f3fc6096f)

    HTTP response: 201| +|[01655-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01655-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d66fff8016f90e7cbef4b/download)
    [Logs](https://api.biosimulations.org/logs/677d66fff8016f90e7cbef4b?includeOutput=true)
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    HTTP response: 201| +|[01656-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01656-sbml-l3v1.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[01657-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01657-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[01658-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01658-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[01659-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01659-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[01660-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01660-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[01661-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01661-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[01662-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01662-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[01663-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01663-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[01664-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01664-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[01665-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01665-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[01666-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01666-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d673667468f9f3fc60a71/download)
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    HTTP response: 201| +|[01667-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01667-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d673e3e750b90a4268cf9/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d673b3e750b90a4268cf3/download)
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    HTTP response: 201| +|[01668-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01668-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d674367468f9f3fc60aa8/download)
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    pass[Download](https://api.biosimulations.org/results/677d6741f8016f90e7cbf06a/download)
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    HTTP response: 201| +|[01669-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01669-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d67483e750b90a4268d2e/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6746f8016f90e7cbf07a/download)
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    HTTP response: 201| +|[01670-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01670-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d674ef8016f90e7cbf091/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d674b3e750b90a4268d3d/download)
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    HTTP response: 201| +|[01671-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01671-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d67543e750b90a4268d77/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67513e750b90a4268d64/download)
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    HTTP response: 201| +|[01672-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01672-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d675af8016f90e7cbf0cc/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6757f8016f90e7cbf0be/download)
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    HTTP response: 201| +|[01673-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01673-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d67603e750b90a4268db3/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d675d3e750b90a4268dab/download)
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    HTTP response: 201| +|[01674-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01674-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6765f8016f90e7cbf0f9/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67623e750b90a4268db7/download)
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    HTTP response: 201| +|[01675-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01675-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d676af8016f90e7cbf11c/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67673e750b90a4268dcc/download)
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    HTTP response: 201| +|[01676-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01676-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d676f3e750b90a4268dde/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d676df8016f90e7cbf125/download)
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    HTTP response: 201| +|[01677-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01677-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d677467468f9f3fc60b3a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67723e750b90a4268de1/download)
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    HTTP response: 201| +|[01678-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01678-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d677a67468f9f3fc60b5c/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6777f8016f90e7cbf14a/download)
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    HTTP response: 201| +|[01679-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01679-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d678067468f9f3fc60b79/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d677d3e750b90a4268e1a/download)
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    HTTP response: 201| +|[01680-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01680-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d67853e750b90a4268e2d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67823e750b90a4268e29/download)
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    HTTP response: 201| +|[01681-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01681-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d678b67468f9f3fc60bb2/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67893e750b90a4268e49/download)
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    HTTP response: 201| +|[01682-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01682-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6791f8016f90e7cbf1a4/download)
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    HTTP response: 201| +|[01683-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01683-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67943e750b90a4268e72/download)
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    HTTP response: 201| +|[01684-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01684-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d679e3e750b90a4268e95/download)
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    HTTP response: 201|
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    HTTP response: 201| +|[01685-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01685-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201| +|[01686-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01686-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d67aaf8016f90e7cbf209/download)
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    pass[Download](https://api.biosimulations.org/results/677d67a73e750b90a4268ea9/download)
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    HTTP response: 201| +|[01687-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01687-sbml-l3v2.xml)|pass|pass|pass|pass|True|
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67ad67468f9f3fc60c31/download)
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    HTTP response: 201| +|[01688-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01688-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d67b667468f9f3fc60c55/download)
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    pass[Download](https://api.biosimulations.org/results/677d67b3f8016f90e7cbf224/download)
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    HTTP response: 201| +|[01689-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01689-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d67bd3e750b90a4268ee8/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67ba67468f9f3fc60c5a/download)
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    HTTP response: 201| +|[01690-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01690-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d67c33e750b90a4268eff/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67c067468f9f3fc60c7a/download)
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    HTTP response: 201| +|[01691-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01691-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d67ca3e750b90a4268f0f/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67c7f8016f90e7cbf261/download)
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    HTTP response: 201| +|[01692-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01692-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d67d067468f9f3fc60cb1/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67cd67468f9f3fc60ca7/download)
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    HTTP response: 201| +|[01693-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01693-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d67d53e750b90a4268f3e/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67d2f8016f90e7cbf289/download)
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    HTTP response: 201| +|[01694-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01694-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d67daf8016f90e7cbf2aa/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67d7f8016f90e7cbf29c/download)
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    HTTP response: 201| +|[01695-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01695-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d67df3e750b90a4268f64/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67dcf8016f90e7cbf2b5/download)
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    HTTP response: 201| +|[01696-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01696-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d67e467468f9f3fc60cec/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67e23e750b90a4268f6e/download)
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    HTTP response: 201| +|[01697-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01697-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d67eaf8016f90e7cbf2e7/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67e7f8016f90e7cbf2cb/download)
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    HTTP response: 201| +|[01698-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01698-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d67f03e750b90a4268f9e/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67edf8016f90e7cbf2ff/download)
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    HTTP response: 201| +|[01699-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01699-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d67f5f8016f90e7cbf31b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67f33e750b90a4268fa6/download)
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    HTTP response: 201| +|[01700-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01700-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d67fb3e750b90a4268fbd/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67f83e750b90a4268fb9/download)
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    HTTP response: 201| +|[01701-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01701-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6800f8016f90e7cbf337/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d67fef8016f90e7cbf32d/download)
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    HTTP response: 201| +|[01702-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01702-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6806f8016f90e7cbf34c/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6803f8016f90e7cbf341/download)
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    HTTP response: 201| +|[01703-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01703-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d680bf8016f90e7cbf36a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6808f8016f90e7cbf35e/download)
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    HTTP response: 201| +|[01704-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01704-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d681067468f9f3fc60db1/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d680ef8016f90e7cbf37c/download)
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    HTTP response: 201| +|[01705-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01705-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d681667468f9f3fc60dc9/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d681367468f9f3fc60dbc/download)
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    HTTP response: 201| +|[01706-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01706-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d681bf8016f90e7cbf3c0/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6818f8016f90e7cbf3a2/download)
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    HTTP response: 201| +|[01707-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01707-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6820f8016f90e7cbf3c6/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d681e67468f9f3fc60ddd/download)
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    HTTP response: 201| +|[01708-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01708-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6827f8016f90e7cbf3e7/download)
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    pass[Download](https://api.biosimulations.org/results/677d6823f8016f90e7cbf3d4/download)
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    HTTP response: 201| +|[01709-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01709-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d682d67468f9f3fc60e0a/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d682af8016f90e7cbf3ee/download)
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    HTTP response: 201| +|[01710-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01710-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d683267468f9f3fc60e29/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d683067468f9f3fc60e24/download)
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    HTTP response: 201| +|[01711-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01711-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d683867468f9f3fc60e3f/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6836f8016f90e7cbf430/download)
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    HTTP response: 201| +|[01712-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01712-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d683ef8016f90e7cbf45b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d683c3e750b90a42690b0/download)
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    HTTP response: 201| +|[01713-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01713-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d684567468f9f3fc60e75/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d68423e750b90a42690d4/download)
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    HTTP response: 201| +|[01714-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01714-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d684a3e750b90a42690ec/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d684867468f9f3fc60e78/download)
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    HTTP response: 201| +|[01715-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01715-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d68503e750b90a42690fa/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d684df8016f90e7cbf490/download)
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    HTTP response: 201| +|[01716-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01716-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6856f8016f90e7cbf4b5/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d685367468f9f3fc60e9d/download)
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    HTTP response: 201| +|[01717-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01717-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d685bf8016f90e7cbf4c6/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d685967468f9f3fc60eb3/download)
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    HTTP response: 201| +|[01718-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01718-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d686167468f9f3fc60ece/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d685ff8016f90e7cbf4df/download)
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    HTTP response: 201| +|[01719-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01719-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d686867468f9f3fc60ee2/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d686567468f9f3fc60ed9/download)
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    HTTP response: 201| +|[01720-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01720-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d686d3e750b90a4269174/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d686af8016f90e7cbf506/download)
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    HTTP response: 201| +|[01721-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01721-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d68733e750b90a426918b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d687067468f9f3fc60ef4/download)
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    HTTP response: 201| +|[01722-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01722-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d68783e750b90a42691a9/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6876f8016f90e7cbf531/download)
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    HTTP response: 201| +|[01723-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01723-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d687ef8016f90e7cbf564/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d687b67468f9f3fc60f30/download)
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    HTTP response: 201| +|[01724-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01724-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d688367468f9f3fc60f40/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6881f8016f90e7cbf569/download)
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    HTTP response: 201| +|[01725-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01725-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6889f8016f90e7cbf598/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d68863e750b90a42691ce/download)
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    HTTP response: 201| +|[01726-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01726-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d688f67468f9f3fc60f6d/download)
    [Logs](https://api.biosimulations.org/logs/677d688f67468f9f3fc60f6d?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d688c3e750b90a42691e1/download)
    [Logs](https://api.biosimulations.org/logs/677d688c3e750b90a42691e1?includeOutput=true)
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    HTTP response: 201| +|[01727-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01727-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6896f8016f90e7cbf5bd/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d68923e750b90a42691f5/download)
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    HTTP response: 201| +|[01728-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01728-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d689d3e750b90a426922d/download)
    [Logs](https://api.biosimulations.org/logs/677d689d3e750b90a426922d?includeOutput=true)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d689af8016f90e7cbf5d6/download)
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    HTTP response: 201| +|[01729-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01729-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d68a367468f9f3fc60fc8/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d68a13e750b90a4269237/download)
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    HTTP response: 201| +|[01730-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01730-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d68a9f8016f90e7cbf60b/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d68a6f8016f90e7cbf601/download)
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    HTTP response: 201| +|[01731-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01731-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d68b03e750b90a426927e/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d68ad3e750b90a4269251/download)
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    HTTP response: 201| +|[01732-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01732-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d68b567468f9f3fc6100f/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d68b23e750b90a4269283/download)
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    HTTP response: 201| +|[01733-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01733-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d68bb67468f9f3fc6102d/download)
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    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d68b83e750b90a4269295/download)
    [Logs](https://api.biosimulations.org/logs/677d68b83e750b90a4269295?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68b83e750b90a4269295)

    HTTP response: 201| +|[01734-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01734-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d68c1f8016f90e7cbf659/download)
    [Logs](https://api.biosimulations.org/logs/677d68c1f8016f90e7cbf659?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68c1f8016f90e7cbf659)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d68be3e750b90a42692ab/download)
    [Logs](https://api.biosimulations.org/logs/677d68be3e750b90a42692ab?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68be3e750b90a42692ab)

    HTTP response: 201| +|[01735-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01735-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d68c667468f9f3fc61057/download)
    [Logs](https://api.biosimulations.org/logs/677d68c667468f9f3fc61057?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68c667468f9f3fc61057)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d68c3f8016f90e7cbf662/download)
    [Logs](https://api.biosimulations.org/logs/677d68c3f8016f90e7cbf662?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68c3f8016f90e7cbf662)

    HTTP response: 201| +|[01736-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01736-sbml-l3v2.xml)|pass|pass|pass|
    SpeciesRef S4_stoich is not a named SpeciesReference, at ?getNamedSpeciesReferenceInfo@LLVMModelDataSymbols@rrllvm@@QEAAAEBUSpeciesReferenceInfo@12@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d68cbf8016f90e7cbf682/download)
    [Logs](https://api.biosimulations.org/logs/677d68cbf8016f90e7cbf682?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68cbf8016f90e7cbf682)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: S4_stoich is not a named SpeciesReference, at const rrllvm::LLVMModelDataSymbols::SpeciesReferenceInfo& rrllvm::LLVMModelDataSymbols::getNamedSpeciesReferenceInfo(const string&) const```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d68c8f8016f90e7cbf676/download)
    [Logs](https://api.biosimulations.org/logs/677d68c8f8016f90e7cbf676?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68c8f8016f90e7cbf676)

    HTTP response: 201| +|[01737-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01737-sbml-l3v2.xml)|pass|pass|pass|
    SpeciesRef S4_stoich is not a named SpeciesReference, at ?getNamedSpeciesReferenceInfo@LLVMModelDataSymbols@rrllvm@@QEAAAEBUSpeciesReferenceInfo@12@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d68d067468f9f3fc61073/download)
    [Logs](https://api.biosimulations.org/logs/677d68d067468f9f3fc61073?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68d067468f9f3fc61073)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: S4_stoich is not a named SpeciesReference, at const rrllvm::LLVMModelDataSymbols::SpeciesReferenceInfo& rrllvm::LLVMModelDataSymbols::getNamedSpeciesReferenceInfo(const string&) const```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d68ce67468f9f3fc61069/download)
    [Logs](https://api.biosimulations.org/logs/677d68ce67468f9f3fc61069?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68ce67468f9f3fc61069)

    HTTP response: 201| +|[01738-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01738-sbml-l3v2.xml)|pass|pass|pass|
    SpeciesRef S4_stoich is not a named SpeciesReference, at ?getNamedSpeciesReferenceInfo@LLVMModelDataSymbols@rrllvm@@QEAAAEBUSpeciesReferenceInfo@12@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@@Z
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d68d6f8016f90e7cbf69d/download)
    [Logs](https://api.biosimulations.org/logs/677d68d6f8016f90e7cbf69d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68d6f8016f90e7cbf69d)

    HTTP response: 201

    Error message: ```The COMBINE/OMEX did not execute successfully: The SED document did not execute successfully: S4_stoich is not a named SpeciesReference, at const rrllvm::LLVMModelDataSymbols::SpeciesReferenceInfo& rrllvm::LLVMModelDataSymbols::getNamedSpeciesReferenceInfo(const string&) const```

    Exception type: ```CombineArchiveExecutionError```|
    pass[Download](https://api.biosimulations.org/results/677d68d33e750b90a42692f9/download)
    [Logs](https://api.biosimulations.org/logs/677d68d33e750b90a42692f9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68d33e750b90a42692f9)

    HTTP response: 201| +|[01739-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01739-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d68db67468f9f3fc610a7/download)
    [Logs](https://api.biosimulations.org/logs/677d68db67468f9f3fc610a7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68db67468f9f3fc610a7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d68d867468f9f3fc61087/download)
    [Logs](https://api.biosimulations.org/logs/677d68d867468f9f3fc61087?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68d867468f9f3fc61087)

    HTTP response: 201| +|[01740-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01740-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d68e167468f9f3fc610b7/download)
    [Logs](https://api.biosimulations.org/logs/677d68e167468f9f3fc610b7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68e167468f9f3fc610b7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d68de3e750b90a426932c/download)
    [Logs](https://api.biosimulations.org/logs/677d68de3e750b90a426932c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68de3e750b90a426932c)

    HTTP response: 201| +|[01741-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01741-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d68e767468f9f3fc610c3/download)
    [Logs](https://api.biosimulations.org/logs/677d68e767468f9f3fc610c3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68e767468f9f3fc610c3)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d68e4f8016f90e7cbf6d3/download)
    [Logs](https://api.biosimulations.org/logs/677d68e4f8016f90e7cbf6d3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68e4f8016f90e7cbf6d3)

    HTTP response: 201| +|[01742-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01742-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d68ec67468f9f3fc610dd/download)
    [Logs](https://api.biosimulations.org/logs/677d68ec67468f9f3fc610dd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68ec67468f9f3fc610dd)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d68eaf8016f90e7cbf6eb/download)
    [Logs](https://api.biosimulations.org/logs/677d68eaf8016f90e7cbf6eb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68eaf8016f90e7cbf6eb)

    HTTP response: 201| +|[01743-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01743-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d68f267468f9f3fc610f6/download)
    [Logs](https://api.biosimulations.org/logs/677d68f267468f9f3fc610f6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68f267468f9f3fc610f6)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d68eff8016f90e7cbf702/download)
    [Logs](https://api.biosimulations.org/logs/677d68eff8016f90e7cbf702?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68eff8016f90e7cbf702)

    HTTP response: 201| +|[01744-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01744-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d68f767468f9f3fc61107/download)
    [Logs](https://api.biosimulations.org/logs/677d68f767468f9f3fc61107?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68f767468f9f3fc61107)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d68f467468f9f3fc61101/download)
    [Logs](https://api.biosimulations.org/logs/677d68f467468f9f3fc61101?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68f467468f9f3fc61101)

    HTTP response: 201| +|[01745-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01745-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d68fc67468f9f3fc61122/download)
    [Logs](https://api.biosimulations.org/logs/677d68fc67468f9f3fc61122?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68fc67468f9f3fc61122)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d68faf8016f90e7cbf726/download)
    [Logs](https://api.biosimulations.org/logs/677d68faf8016f90e7cbf726?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d68faf8016f90e7cbf726)

    HTTP response: 201| +|[01746-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01746-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d69023e750b90a42693a2/download)
    [Logs](https://api.biosimulations.org/logs/677d69023e750b90a42693a2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69023e750b90a42693a2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d690067468f9f3fc6112f/download)
    [Logs](https://api.biosimulations.org/logs/677d690067468f9f3fc6112f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d690067468f9f3fc6112f)

    HTTP response: 201| +|[01747-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01747-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6908f8016f90e7cbf758/download)
    [Logs](https://api.biosimulations.org/logs/677d6908f8016f90e7cbf758?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6908f8016f90e7cbf758)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6905f8016f90e7cbf749/download)
    [Logs](https://api.biosimulations.org/logs/677d6905f8016f90e7cbf749?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6905f8016f90e7cbf749)

    HTTP response: 201| +|[01748-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01748-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d690e67468f9f3fc61160/download)
    [Logs](https://api.biosimulations.org/logs/677d690e67468f9f3fc61160?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d690e67468f9f3fc61160)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d690bf8016f90e7cbf764/download)
    [Logs](https://api.biosimulations.org/logs/677d690bf8016f90e7cbf764?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d690bf8016f90e7cbf764)

    HTTP response: 201| +|[01749-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01749-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6914f8016f90e7cbf77a/download)
    [Logs](https://api.biosimulations.org/logs/677d6914f8016f90e7cbf77a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6914f8016f90e7cbf77a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69123e750b90a42693e8/download)
    [Logs](https://api.biosimulations.org/logs/677d69123e750b90a42693e8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69123e750b90a42693e8)

    HTTP response: 201| +|[01750-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01750-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d691bf8016f90e7cbf799/download)
    [Logs](https://api.biosimulations.org/logs/677d691bf8016f90e7cbf799?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d691bf8016f90e7cbf799)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69183e750b90a4269400/download)
    [Logs](https://api.biosimulations.org/logs/677d69183e750b90a4269400?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69183e750b90a4269400)

    HTTP response: 201| +|[01751-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01751-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d692167468f9f3fc611a1/download)
    [Logs](https://api.biosimulations.org/logs/677d692167468f9f3fc611a1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d692167468f9f3fc611a1)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d691ef8016f90e7cbf79f/download)
    [Logs](https://api.biosimulations.org/logs/677d691ef8016f90e7cbf79f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d691ef8016f90e7cbf79f)

    HTTP response: 201| +|[01752-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01752-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d69273e750b90a426942f/download)
    [Logs](https://api.biosimulations.org/logs/677d69273e750b90a426942f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69273e750b90a426942f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6923f8016f90e7cbf7b7/download)
    [Logs](https://api.biosimulations.org/logs/677d6923f8016f90e7cbf7b7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6923f8016f90e7cbf7b7)

    HTTP response: 201| +|[01753-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01753-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d692df8016f90e7cbf7db/download)
    [Logs](https://api.biosimulations.org/logs/677d692df8016f90e7cbf7db?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d692df8016f90e7cbf7db)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d692a3e750b90a426943a/download)
    [Logs](https://api.biosimulations.org/logs/677d692a3e750b90a426943a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d692a3e750b90a426943a)

    HTTP response: 201| +|[01754-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01754-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6932f8016f90e7cbf7eb/download)
    [Logs](https://api.biosimulations.org/logs/677d6932f8016f90e7cbf7eb?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6932f8016f90e7cbf7eb)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d693067468f9f3fc611d7/download)
    [Logs](https://api.biosimulations.org/logs/677d693067468f9f3fc611d7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d693067468f9f3fc611d7)

    HTTP response: 201| +|[01755-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01755-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d69383e750b90a4269463/download)
    [Logs](https://api.biosimulations.org/logs/677d69383e750b90a4269463?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69383e750b90a4269463)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69363e750b90a426945c/download)
    [Logs](https://api.biosimulations.org/logs/677d69363e750b90a426945c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69363e750b90a426945c)

    HTTP response: 201| +|[01756-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01756-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d693d3e750b90a4269478/download)
    [Logs](https://api.biosimulations.org/logs/677d693d3e750b90a4269478?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d693d3e750b90a4269478)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d693b67468f9f3fc61229/download)
    [Logs](https://api.biosimulations.org/logs/677d693b67468f9f3fc61229?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d693b67468f9f3fc61229)

    HTTP response: 201| +|[01757-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01757-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6943f8016f90e7cbf820/download)
    [Logs](https://api.biosimulations.org/logs/677d6943f8016f90e7cbf820?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6943f8016f90e7cbf820)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6940f8016f90e7cbf81d/download)
    [Logs](https://api.biosimulations.org/logs/677d6940f8016f90e7cbf81d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6940f8016f90e7cbf81d)

    HTTP response: 201| +|[01758-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01758-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d694967468f9f3fc61252/download)
    [Logs](https://api.biosimulations.org/logs/677d694967468f9f3fc61252?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d694967468f9f3fc61252)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6946f8016f90e7cbf82d/download)
    [Logs](https://api.biosimulations.org/logs/677d6946f8016f90e7cbf82d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6946f8016f90e7cbf82d)

    HTTP response: 201| +|[01759-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01759-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d694d67468f9f3fc61265/download)
    [Logs](https://api.biosimulations.org/logs/677d694d67468f9f3fc61265?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d694d67468f9f3fc61265)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d694b67468f9f3fc6125f/download)
    [Logs](https://api.biosimulations.org/logs/677d694b67468f9f3fc6125f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d694b67468f9f3fc6125f)

    HTTP response: 201| +|[01760-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01760-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6953f8016f90e7cbf85b/download)
    [Logs](https://api.biosimulations.org/logs/677d6953f8016f90e7cbf85b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6953f8016f90e7cbf85b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6950f8016f90e7cbf84d/download)
    [Logs](https://api.biosimulations.org/logs/677d6950f8016f90e7cbf84d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6950f8016f90e7cbf84d)

    HTTP response: 201| +|[01761-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01761-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d695867468f9f3fc61296/download)
    [Logs](https://api.biosimulations.org/logs/677d695867468f9f3fc61296?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d695867468f9f3fc61296)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6955f8016f90e7cbf868/download)
    [Logs](https://api.biosimulations.org/logs/677d6955f8016f90e7cbf868?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6955f8016f90e7cbf868)

    HTTP response: 201| +|[01762-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01762-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d695ef8016f90e7cbf88a/download)
    [Logs](https://api.biosimulations.org/logs/677d695ef8016f90e7cbf88a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d695ef8016f90e7cbf88a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d695b67468f9f3fc612a0/download)
    [Logs](https://api.biosimulations.org/logs/677d695b67468f9f3fc612a0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d695b67468f9f3fc612a0)

    HTTP response: 201| +|[01763-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01763-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6963f8016f90e7cbf898/download)
    [Logs](https://api.biosimulations.org/logs/677d6963f8016f90e7cbf898?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6963f8016f90e7cbf898)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6960f8016f90e7cbf890/download)
    [Logs](https://api.biosimulations.org/logs/677d6960f8016f90e7cbf890?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6960f8016f90e7cbf890)

    HTTP response: 201| +|[01764-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01764-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d696867468f9f3fc612c5/download)
    [Logs](https://api.biosimulations.org/logs/677d696867468f9f3fc612c5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d696867468f9f3fc612c5)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69663e750b90a426951f/download)
    [Logs](https://api.biosimulations.org/logs/677d69663e750b90a426951f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69663e750b90a426951f)

    HTTP response: 201| +|[01765-sbml-l3v1.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01765-sbml-l3v1.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d696df8016f90e7cbf8bc/download)
    [Logs](https://api.biosimulations.org/logs/677d696df8016f90e7cbf8bc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d696df8016f90e7cbf8bc)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d696b3e750b90a4269536/download)
    [Logs](https://api.biosimulations.org/logs/677d696b3e750b90a4269536?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d696b3e750b90a4269536)

    HTTP response: 201| +|[01766-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01766-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d697367468f9f3fc612fe/download)
    [Logs](https://api.biosimulations.org/logs/677d697367468f9f3fc612fe?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d697367468f9f3fc612fe)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69703e750b90a4269557/download)
    [Logs](https://api.biosimulations.org/logs/677d69703e750b90a4269557?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69703e750b90a4269557)

    HTTP response: 201| +|[01767-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01767-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d697967468f9f3fc61313/download)
    [Logs](https://api.biosimulations.org/logs/677d697967468f9f3fc61313?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d697967468f9f3fc61313)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6976f8016f90e7cbf8df/download)
    [Logs](https://api.biosimulations.org/logs/677d6976f8016f90e7cbf8df?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6976f8016f90e7cbf8df)

    HTTP response: 201| +|[01768-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01768-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d69863e750b90a426959b/download)
    [Logs](https://api.biosimulations.org/logs/677d69863e750b90a426959b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69863e750b90a426959b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d697d67468f9f3fc61322/download)
    [Logs](https://api.biosimulations.org/logs/677d697d67468f9f3fc61322?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d697d67468f9f3fc61322)

    HTTP response: 201| +|[01769-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01769-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d698cf8016f90e7cbf930/download)
    [Logs](https://api.biosimulations.org/logs/677d698cf8016f90e7cbf930?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d698cf8016f90e7cbf930)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6989f8016f90e7cbf910/download)
    [Logs](https://api.biosimulations.org/logs/677d6989f8016f90e7cbf910?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6989f8016f90e7cbf910)

    HTTP response: 201| +|[01770-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01770-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d69923e750b90a42695c0/download)
    [Logs](https://api.biosimulations.org/logs/677d69923e750b90a42695c0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69923e750b90a42695c0)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d698f3e750b90a42695bc/download)
    [Logs](https://api.biosimulations.org/logs/677d698f3e750b90a42695bc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d698f3e750b90a42695bc)

    HTTP response: 201| +|[01771-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01771-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d699967468f9f3fc6136f/download)
    [Logs](https://api.biosimulations.org/logs/677d699967468f9f3fc6136f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d699967468f9f3fc6136f)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6995f8016f90e7cbf942/download)
    [Logs](https://api.biosimulations.org/logs/677d6995f8016f90e7cbf942?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6995f8016f90e7cbf942)

    HTTP response: 201| +|[01772-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01772-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d699e67468f9f3fc6138d/download)
    [Logs](https://api.biosimulations.org/logs/677d699e67468f9f3fc6138d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d699e67468f9f3fc6138d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d699c67468f9f3fc6137b/download)
    [Logs](https://api.biosimulations.org/logs/677d699c67468f9f3fc6137b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d699c67468f9f3fc6137b)

    HTTP response: 201| +|[01773-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01773-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d69a367468f9f3fc613a6/download)
    [Logs](https://api.biosimulations.org/logs/677d69a367468f9f3fc613a6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69a367468f9f3fc613a6)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69a167468f9f3fc61397/download)
    [Logs](https://api.biosimulations.org/logs/677d69a167468f9f3fc61397?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69a167468f9f3fc61397)

    HTTP response: 201| +|[01774-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01774-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d69a9f8016f90e7cbf98d/download)
    [Logs](https://api.biosimulations.org/logs/677d69a9f8016f90e7cbf98d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69a9f8016f90e7cbf98d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69a7f8016f90e7cbf976/download)
    [Logs](https://api.biosimulations.org/logs/677d69a7f8016f90e7cbf976?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69a7f8016f90e7cbf976)

    HTTP response: 201| +|[01775-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01775-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d69af3e750b90a4269606/download)
    [Logs](https://api.biosimulations.org/logs/677d69af3e750b90a4269606?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69af3e750b90a4269606)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69ac3e750b90a4269601/download)
    [Logs](https://api.biosimulations.org/logs/677d69ac3e750b90a4269601?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69ac3e750b90a4269601)

    HTTP response: 201| +|[01776-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01776-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d69b43e750b90a426961c/download)
    [Logs](https://api.biosimulations.org/logs/677d69b43e750b90a426961c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69b43e750b90a426961c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69b2f8016f90e7cbf994/download)
    [Logs](https://api.biosimulations.org/logs/677d69b2f8016f90e7cbf994?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69b2f8016f90e7cbf994)

    HTTP response: 201| +|[01777-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01777-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d69b9f8016f90e7cbf9ab/download)
    [Logs](https://api.biosimulations.org/logs/677d69b9f8016f90e7cbf9ab?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69b9f8016f90e7cbf9ab)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69b73e750b90a4269621/download)
    [Logs](https://api.biosimulations.org/logs/677d69b73e750b90a4269621?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69b73e750b90a4269621)

    HTTP response: 201| +|[01778-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01778-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    FAIL[Download](https://api.biosimulations.org/results/677d69bff8016f90e7cbf9b6/download)
    [Logs](https://api.biosimulations.org/logs/677d69bff8016f90e7cbf9b6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69bff8016f90e7cbf9b6)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp826000 is invalid. - Model model_1 is invalid. - The model file 01778-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. The with the id 'moddef2' refers to a source 'external-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. ```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d69bcf8016f90e7cbf9b1/download)
    [Logs](https://api.biosimulations.org/logs/677d69bcf8016f90e7cbf9b1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69bcf8016f90e7cbf9b1)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp85927 is invalid. - Model model_1 is invalid. - The model file 01778-sbml-l3v2.xml is invalid. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. In ExternalModelDefinition::getReferencedModel, unable to resolve the external model definition 'moddef2': could not the resolve 'source' attribute 'external-l3v2.xml' as a valid SBML Document. - SBML component consistency (1020615) at line 26, column 6: The value of a 'comp:modelRef' attribute on a must be the identifier of a , , or object in the same SBML object as the . Reference: L3V1 Comp V1 Section 3.5.1 In Submodel::instantiate, unable to instantiate submodel 'sub2' because the external model definition it referenced (model 'moddef2') could not be resolved. - SBML component consistency (1090101) at line 30, column 4: The external model referenced in this model could not be resolved. The with the id 'moddef2' refers to a source 'external-l3v2.xml' that cannot be accessed from here. Further checks relating to this document cannot be performed. ```

    Exception type: ```ValueError```| +|[01779-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01779-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d69c5f8016f90e7cbf9cf/download)
    [Logs](https://api.biosimulations.org/logs/677d69c5f8016f90e7cbf9cf?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69c5f8016f90e7cbf9cf)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69c2f8016f90e7cbf9c3/download)
    [Logs](https://api.biosimulations.org/logs/677d69c2f8016f90e7cbf9c3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69c2f8016f90e7cbf9c3)

    HTTP response: 201| +|[01780-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01780-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d69ca3e750b90a426965a/download)
    [Logs](https://api.biosimulations.org/logs/677d69ca3e750b90a426965a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69ca3e750b90a426965a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69c73e750b90a4269653/download)
    [Logs](https://api.biosimulations.org/logs/677d69c73e750b90a4269653?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69c73e750b90a4269653)

    HTTP response: 201| +|[01781-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01781-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d69d0f8016f90e7cbf9f7/download)
    [Logs](https://api.biosimulations.org/logs/677d69d0f8016f90e7cbf9f7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69d0f8016f90e7cbf9f7)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69cdf8016f90e7cbf9ee/download)
    [Logs](https://api.biosimulations.org/logs/677d69cdf8016f90e7cbf9ee?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69cdf8016f90e7cbf9ee)

    HTTP response: 201| +|[01782-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01782-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d69d567468f9f3fc6145a/download)
    [Logs](https://api.biosimulations.org/logs/677d69d567468f9f3fc6145a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69d567468f9f3fc6145a)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69d33e750b90a4269696/download)
    [Logs](https://api.biosimulations.org/logs/677d69d33e750b90a4269696?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69d33e750b90a4269696)

    HTTP response: 201| +|[01783-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01783-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d69da3e750b90a42696ca/download)
    [Logs](https://api.biosimulations.org/logs/677d69da3e750b90a42696ca?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69da3e750b90a42696ca)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69d83e750b90a42696bd/download)
    [Logs](https://api.biosimulations.org/logs/677d69d83e750b90a42696bd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69d83e750b90a42696bd)

    HTTP response: 201| +|[01784-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01784-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d69e067468f9f3fc6149b/download)
    [Logs](https://api.biosimulations.org/logs/677d69e067468f9f3fc6149b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69e067468f9f3fc6149b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69dd3e750b90a42696d0/download)
    [Logs](https://api.biosimulations.org/logs/677d69dd3e750b90a42696d0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69dd3e750b90a42696d0)

    HTTP response: 201| +|[01785-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01785-sbml-l2v5.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = C2 - C1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d69e53e750b90a42696ed/download)
    [Logs](https://api.biosimulations.org/logs/677d69e53e750b90a42696ed?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69e53e750b90a42696ed)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69e3f8016f90e7cbfa70/download)
    [Logs](https://api.biosimulations.org/logs/677d69e3f8016f90e7cbfa70?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69e3f8016f90e7cbfa70)

    HTTP response: 201| +|[01786-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01786-sbml-l2v5.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = C2 - C1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d69ea67468f9f3fc614c2/download)
    [Logs](https://api.biosimulations.org/logs/677d69ea67468f9f3fc614c2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69ea67468f9f3fc614c2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69e83e750b90a42696f8/download)
    [Logs](https://api.biosimulations.org/logs/677d69e83e750b90a42696f8?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69e83e750b90a42696f8)

    HTTP response: 201| +|[01787-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01787-sbml-l2v5.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = S2 - S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d69ef67468f9f3fc614d6/download)
    [Logs](https://api.biosimulations.org/logs/677d69ef67468f9f3fc614d6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69ef67468f9f3fc614d6)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69ed3e750b90a4269705/download)
    [Logs](https://api.biosimulations.org/logs/677d69ed3e750b90a4269705?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69ed3e750b90a4269705)

    HTTP response: 201| +|[01788-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01788-sbml-l2v5.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = S2 - S1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d69f567468f9f3fc614ed/download)
    [Logs](https://api.biosimulations.org/logs/677d69f567468f9f3fc614ed?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69f567468f9f3fc614ed)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69f2f8016f90e7cbfab7/download)
    [Logs](https://api.biosimulations.org/logs/677d69f2f8016f90e7cbfab7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69f2f8016f90e7cbfab7)

    HTTP response: 201| +|[01789-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01789-sbml-l2v5.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = P2 - P1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d69fa3e750b90a4269737/download)
    [Logs](https://api.biosimulations.org/logs/677d69fa3e750b90a4269737?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69fa3e750b90a4269737)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69f8f8016f90e7cbfad1/download)
    [Logs](https://api.biosimulations.org/logs/677d69f8f8016f90e7cbfad1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69f8f8016f90e7cbfad1)

    HTTP response: 201| +|[01790-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01790-sbml-l2v5.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = P2 - P1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d69fff8016f90e7cbfaf2/download)
    [Logs](https://api.biosimulations.org/logs/677d69fff8016f90e7cbfaf2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69fff8016f90e7cbfaf2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d69fdf8016f90e7cbfaea/download)
    [Logs](https://api.biosimulations.org/logs/677d69fdf8016f90e7cbfaea?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d69fdf8016f90e7cbfaea)

    HTTP response: 201| +|[01791-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01791-sbml-l2v5.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = P2 - C1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d6a07f8016f90e7cbfb0e/download)
    [Logs](https://api.biosimulations.org/logs/677d6a07f8016f90e7cbfb0e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a07f8016f90e7cbfb0e)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6a043e750b90a426976e/download)
    [Logs](https://api.biosimulations.org/logs/677d6a043e750b90a426976e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a043e750b90a426976e)

    HTTP response: 201| +|[01792-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01792-sbml-l2v5.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = P2 - C1' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d6a0d3e750b90a4269797/download)
    [Logs](https://api.biosimulations.org/logs/677d6a0d3e750b90a4269797?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a0d3e750b90a4269797)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6a0a67468f9f3fc61543/download)
    [Logs](https://api.biosimulations.org/logs/677d6a0a67468f9f3fc61543?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a0a67468f9f3fc61543)

    HTTP response: 201| +|[01793-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01793-sbml-l2v5.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = 1 * C1 - S2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d6a12f8016f90e7cbfb2d/download)
    [Logs](https://api.biosimulations.org/logs/677d6a12f8016f90e7cbfb2d?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a12f8016f90e7cbfb2d)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6a103e750b90a426979e/download)
    [Logs](https://api.biosimulations.org/logs/677d6a103e750b90a426979e?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a103e750b90a426979e)

    HTTP response: 201| +|[01794-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01794-sbml-l2v5.xml)|pass|pass|pass|
    algebraic Unable to support algebraic rules. The formula '0 = P1 - S2' is not supported., at ??0LLVMModelDataSymbols@rrllvm@@QEAA@PEBVModel@libsbml@@I@Z
    |True|
    pass[Download](https://api.biosimulations.org/results/677d6a18f8016f90e7cbfb3c/download)
    [Logs](https://api.biosimulations.org/logs/677d6a18f8016f90e7cbfb3c?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a18f8016f90e7cbfb3c)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6a15f8016f90e7cbfb37/download)
    [Logs](https://api.biosimulations.org/logs/677d6a15f8016f90e7cbfb37?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a15f8016f90e7cbfb37)

    HTTP response: 201| +|[01795-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01795-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6a1df8016f90e7cbfb4b/download)
    [Logs](https://api.biosimulations.org/logs/677d6a1df8016f90e7cbfb4b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a1df8016f90e7cbfb4b)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6a1a3e750b90a42697c6/download)
    [Logs](https://api.biosimulations.org/logs/677d6a1a3e750b90a42697c6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a1a3e750b90a42697c6)

    HTTP response: 201| +|[01796-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01796-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6a23f8016f90e7cbfb67/download)
    [Logs](https://api.biosimulations.org/logs/677d6a23f8016f90e7cbfb67?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a23f8016f90e7cbfb67)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6a203e750b90a42697d7/download)
    [Logs](https://api.biosimulations.org/logs/677d6a203e750b90a42697d7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a203e750b90a42697d7)

    HTTP response: 201| +|[01797-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01797-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6a2a3e750b90a4269802/download)
    [Logs](https://api.biosimulations.org/logs/677d6a2a3e750b90a4269802?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a2a3e750b90a4269802)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6a27f8016f90e7cbfb71/download)
    [Logs](https://api.biosimulations.org/logs/677d6a27f8016f90e7cbfb71?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a27f8016f90e7cbfb71)

    HTTP response: 201| +|[01798-sbml-l2v5.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01798-sbml-l2v5.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6a30f8016f90e7cbfb97/download)
    [Logs](https://api.biosimulations.org/logs/677d6a30f8016f90e7cbfb97?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a30f8016f90e7cbfb97)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6a2df8016f90e7cbfb86/download)
    [Logs](https://api.biosimulations.org/logs/677d6a2df8016f90e7cbfb86?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a2df8016f90e7cbfb86)

    HTTP response: 201| +|[01799-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01799-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6a36f8016f90e7cbfba9/download)
    [Logs](https://api.biosimulations.org/logs/677d6a36f8016f90e7cbfba9?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a36f8016f90e7cbfba9)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6a3367468f9f3fc615e1/download)
    [Logs](https://api.biosimulations.org/logs/677d6a3367468f9f3fc615e1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a3367468f9f3fc615e1)

    HTTP response: 201| +|[01800-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01800-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6a3c67468f9f3fc615fa/download)
    [Logs](https://api.biosimulations.org/logs/677d6a3c67468f9f3fc615fa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a3c67468f9f3fc615fa)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6a393e750b90a4269832/download)
    [Logs](https://api.biosimulations.org/logs/677d6a393e750b90a4269832?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a393e750b90a4269832)

    HTTP response: 201| +|[01801-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01801-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6a4267468f9f3fc61615/download)
    [Logs](https://api.biosimulations.org/logs/677d6a4267468f9f3fc61615?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a4267468f9f3fc61615)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6a3f67468f9f3fc61603/download)
    [Logs](https://api.biosimulations.org/logs/677d6a3f67468f9f3fc61603?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a3f67468f9f3fc61603)

    HTTP response: 201| +|[01802-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01802-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6a47f8016f90e7cbfbe6/download)
    [Logs](https://api.biosimulations.org/logs/677d6a47f8016f90e7cbfbe6?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a47f8016f90e7cbfbe6)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6a443e750b90a4269858/download)
    [Logs](https://api.biosimulations.org/logs/677d6a443e750b90a4269858?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a443e750b90a4269858)

    HTTP response: 201| +|[01803-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01803-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6a4c3e750b90a4269866/download)
    [Logs](https://api.biosimulations.org/logs/677d6a4c3e750b90a4269866?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a4c3e750b90a4269866)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6a4af8016f90e7cbfbf5/download)
    [Logs](https://api.biosimulations.org/logs/677d6a4af8016f90e7cbfbf5?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a4af8016f90e7cbfbf5)

    HTTP response: 201| +|[01804-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01804-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6a523e750b90a4269880/download)
    [Logs](https://api.biosimulations.org/logs/677d6a523e750b90a4269880?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a523e750b90a4269880)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6a4f67468f9f3fc6163f/download)
    [Logs](https://api.biosimulations.org/logs/677d6a4f67468f9f3fc6163f?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a4f67468f9f3fc6163f)

    HTTP response: 201| +|[01805-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01805-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6a573e750b90a4269899/download)
    [Logs](https://api.biosimulations.org/logs/677d6a573e750b90a4269899?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a573e750b90a4269899)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6a5467468f9f3fc61659/download)
    [Logs](https://api.biosimulations.org/logs/677d6a5467468f9f3fc61659?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a5467468f9f3fc61659)

    HTTP response: 201| +|[01806-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01806-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6a5d67468f9f3fc61672/download)
    [Logs](https://api.biosimulations.org/logs/677d6a5d67468f9f3fc61672?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a5d67468f9f3fc61672)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6a5a67468f9f3fc61663/download)
    [Logs](https://api.biosimulations.org/logs/677d6a5a67468f9f3fc61663?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a5a67468f9f3fc61663)

    HTTP response: 201| +|[01807-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01807-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6a633e750b90a42698d2/download)
    [Logs](https://api.biosimulations.org/logs/677d6a633e750b90a42698d2?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a633e750b90a42698d2)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6a6067468f9f3fc61682/download)
    [Logs](https://api.biosimulations.org/logs/677d6a6067468f9f3fc61682?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a6067468f9f3fc61682)

    HTTP response: 201| +|[01808-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01808-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6a68f8016f90e7cbfc63/download)
    [Logs](https://api.biosimulations.org/logs/677d6a68f8016f90e7cbfc63?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a68f8016f90e7cbfc63)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6a6567468f9f3fc616a1/download)
    [Logs](https://api.biosimulations.org/logs/677d6a6567468f9f3fc616a1?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a6567468f9f3fc616a1)

    HTTP response: 201| +|[01809-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01809-sbml-l3v2.xml)|pass|pass|pass|pass|True|
    pass[Download](https://api.biosimulations.org/results/677d6a6d3e750b90a42698fa/download)
    [Logs](https://api.biosimulations.org/logs/677d6a6d3e750b90a42698fa?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a6d3e750b90a42698fa)

    HTTP response: 201|
    pass[Download](https://api.biosimulations.org/results/677d6a6bf8016f90e7cbfc73/download)
    [Logs](https://api.biosimulations.org/logs/677d6a6bf8016f90e7cbfc73?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a6bf8016f90e7cbfc73)

    HTTP response: 201| +|[01810-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01810-sbml-l3v2.xml)|pass|pass|pass|
    other name 'INF' is not defined
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6a7367468f9f3fc616c3/download)
    [Logs](https://api.biosimulations.org/logs/677d6a7367468f9f3fc616c3?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a7367468f9f3fc616c3)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp565330 is invalid. - Data generator Inf_1 is invalid. - The mathematical expression INF cannot be evaluated. - Expression INF could not be evaluated: name 'INF' is not defined workspace: Inf: 1 - Data generator inf_1 is invalid. - The mathematical expression INF cannot be evaluated. - Expression INF could not be evaluated: name 'INF' is not defined workspace: inf: 1```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6a70f8016f90e7cbfc82/download)
    [Logs](https://api.biosimulations.org/logs/677d6a70f8016f90e7cbfc82?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a70f8016f90e7cbfc82)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp815714 is invalid. - Data generator Inf_1 is invalid. - The mathematical expression INF cannot be evaluated. - Expression INF could not be evaluated: name 'INF' is not defined workspace: Inf: 1 - Data generator inf_1 is invalid. - The mathematical expression INF cannot be evaluated. - Expression INF could not be evaluated: name 'INF' is not defined workspace: inf: 1```

    Exception type: ```ValueError```| +|[01811-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01811-sbml-l3v2.xml)|pass|pass|pass|
    other name 'INF' is not defined
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6a793e750b90a4269930/download)
    [Logs](https://api.biosimulations.org/logs/677d6a793e750b90a4269930?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a793e750b90a4269930)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp878272 is invalid. - Data generator Inf_1 is invalid. - The mathematical expression INF cannot be evaluated. - Expression INF could not be evaluated: name 'INF' is not defined workspace: Inf: 1 - Data generator inf_1 is invalid. - The mathematical expression INF cannot be evaluated. - Expression INF could not be evaluated: name 'INF' is not defined workspace: inf: 1```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6a763e750b90a4269927/download)
    [Logs](https://api.biosimulations.org/logs/677d6a763e750b90a4269927?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a763e750b90a4269927)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp608608 is invalid. - Data generator Inf_1 is invalid. - The mathematical expression INF cannot be evaluated. - Expression INF could not be evaluated: name 'INF' is not defined workspace: Inf: 1 - Data generator inf_1 is invalid. - The mathematical expression INF cannot be evaluated. - Expression INF could not be evaluated: name 'INF' is not defined workspace: inf: 1```

    Exception type: ```ValueError```| +|[01812-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01812-sbml-l3v2.xml)|pass|pass|pass|
    other name 'NaN' is not defined
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6a7d67468f9f3fc616e0/download)
    [Logs](https://api.biosimulations.org/logs/677d6a7d67468f9f3fc616e0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a7d67468f9f3fc616e0)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp71338 is invalid. - Data generator NAN_1 is invalid. - The mathematical expression NaN cannot be evaluated. - Expression NaN could not be evaluated: name 'NaN' is not defined workspace: NAN: 1 - Data generator nan_1 is invalid. - The mathematical expression NaN cannot be evaluated. - Expression NaN could not be evaluated: name 'NaN' is not defined workspace: nan: 1```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6a7b67468f9f3fc616db/download)
    [Logs](https://api.biosimulations.org/logs/677d6a7b67468f9f3fc616db?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a7b67468f9f3fc616db)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp425328 is invalid. - Data generator NAN_1 is invalid. - The mathematical expression NaN cannot be evaluated. - Expression NaN could not be evaluated: name 'NaN' is not defined workspace: NAN: 1 - Data generator nan_1 is invalid. - The mathematical expression NaN cannot be evaluated. - Expression NaN could not be evaluated: name 'NaN' is not defined workspace: nan: 1```

    Exception type: ```ValueError```| +|[01813-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01813-sbml-l3v2.xml)|pass|pass|pass|
    other name 'NaN' is not defined
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6a8367468f9f3fc616f7/download)
    [Logs](https://api.biosimulations.org/logs/677d6a8367468f9f3fc616f7?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a8367468f9f3fc616f7)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp451024 is invalid. - Data generator NAN_1 is invalid. - The mathematical expression NaN cannot be evaluated. - Expression NaN could not be evaluated: name 'NaN' is not defined workspace: NAN: 1 - Data generator nan_1 is invalid. - The mathematical expression NaN cannot be evaluated. - Expression NaN could not be evaluated: name 'NaN' is not defined workspace: nan: 1```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6a803e750b90a4269942/download)
    [Logs](https://api.biosimulations.org/logs/677d6a803e750b90a4269942?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a803e750b90a4269942)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp793486 is invalid. - Data generator NAN_1 is invalid. - The mathematical expression NaN cannot be evaluated. - Expression NaN could not be evaluated: name 'NaN' is not defined workspace: NAN: 1 - Data generator nan_1 is invalid. - The mathematical expression NaN cannot be evaluated. - Expression NaN could not be evaluated: name 'NaN' is not defined workspace: nan: 1```

    Exception type: ```ValueError```| +|[01814-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01814-sbml-l3v2.xml)|pass|pass|pass|
    other name 'true' is not defined
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6a8867468f9f3fc616fe/download)
    [Logs](https://api.biosimulations.org/logs/677d6a8867468f9f3fc616fe?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a8867468f9f3fc616fe)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp311021 is invalid. - Data generator true_1 is invalid. - The mathematical expression true cannot be evaluated. - Variables for mathematical expressions cannot have ids equal to the following reserved symbols: - true ```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6a86f8016f90e7cbfcdc/download)
    [Logs](https://api.biosimulations.org/logs/677d6a86f8016f90e7cbfcdc?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a86f8016f90e7cbfcdc)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp298765 is invalid. - Data generator true_1 is invalid. - The mathematical expression true cannot be evaluated. - Variables for mathematical expressions cannot have ids equal to the following reserved symbols: - true ```

    Exception type: ```ValueError```| +|[01815-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01815-sbml-l3v2.xml)|pass|pass|pass|
    other name 'true' is not defined
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6a8e67468f9f3fc61719/download)
    [Logs](https://api.biosimulations.org/logs/677d6a8e67468f9f3fc61719?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a8e67468f9f3fc61719)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp612983 is invalid. - Data generator true_1 is invalid. - The mathematical expression true cannot be evaluated. - Variables for mathematical expressions cannot have ids equal to the following reserved symbols: - true ```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6a8b3e750b90a4269964/download)
    [Logs](https://api.biosimulations.org/logs/677d6a8b3e750b90a4269964?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a8b3e750b90a4269964)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp764237 is invalid. - Data generator true_1 is invalid. - The mathematical expression true cannot be evaluated. - Variables for mathematical expressions cannot have ids equal to the following reserved symbols: - true ```

    Exception type: ```ValueError```| +|[01816-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01816-sbml-l3v2.xml)|pass|pass|pass|
    other name 'false' is not defined
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6a94f8016f90e7cbfd23/download)
    [Logs](https://api.biosimulations.org/logs/677d6a94f8016f90e7cbfd23?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a94f8016f90e7cbfd23)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp778218 is invalid. - Data generator false_1 is invalid. - The mathematical expression false cannot be evaluated. - Variables for mathematical expressions cannot have ids equal to the following reserved symbols: - false ```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6a9167468f9f3fc6172a/download)
    [Logs](https://api.biosimulations.org/logs/677d6a9167468f9f3fc6172a?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a9167468f9f3fc6172a)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp837114 is invalid. - Data generator false_1 is invalid. - The mathematical expression false cannot be evaluated. - Variables for mathematical expressions cannot have ids equal to the following reserved symbols: - false ```

    Exception type: ```ValueError```| +|[01817-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01817-sbml-l3v2.xml)|pass|pass|pass|
    other name 'false' is not defined
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6a99f8016f90e7cbfd41/download)
    [Logs](https://api.biosimulations.org/logs/677d6a99f8016f90e7cbfd41?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a99f8016f90e7cbfd41)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp444394 is invalid. - Data generator false_1 is invalid. - The mathematical expression false cannot be evaluated. - Variables for mathematical expressions cannot have ids equal to the following reserved symbols: - false ```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6a9767468f9f3fc61753/download)
    [Logs](https://api.biosimulations.org/logs/677d6a9767468f9f3fc61753?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a9767468f9f3fc61753)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp259010 is invalid. - Data generator false_1 is invalid. - The mathematical expression false cannot be evaluated. - Variables for mathematical expressions cannot have ids equal to the following reserved symbols: - false ```

    Exception type: ```ValueError```| +|[01818-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01818-sbml-l3v2.xml)|pass|pass|pass|
    other 'float' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6a9e3e750b90a42699e0/download)
    [Logs](https://api.biosimulations.org/logs/677d6a9e3e750b90a42699e0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a9e3e750b90a42699e0)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp164154 is invalid. - Data generator pi_1 is invalid. - The mathematical expression pi cannot be evaluated. - Variables for mathematical expressions cannot have ids equal to the following reserved symbols: - pi ```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6a9c67468f9f3fc6177b/download)
    [Logs](https://api.biosimulations.org/logs/677d6a9c67468f9f3fc6177b?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6a9c67468f9f3fc6177b)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp771429 is invalid. - Data generator pi_1 is invalid. - The mathematical expression pi cannot be evaluated. - Variables for mathematical expressions cannot have ids equal to the following reserved symbols: - pi ```

    Exception type: ```ValueError```| +|[01819-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01819-sbml-l3v2.xml)|pass|pass|pass|
    other 'float' object is not subscriptable
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6aa4f8016f90e7cbfd70/download)
    [Logs](https://api.biosimulations.org/logs/677d6aa4f8016f90e7cbfd70?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6aa4f8016f90e7cbfd70)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp80392 is invalid. - Data generator pi_1 is invalid. - The mathematical expression pi cannot be evaluated. - Variables for mathematical expressions cannot have ids equal to the following reserved symbols: - pi ```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6aa167468f9f3fc61787/download)
    [Logs](https://api.biosimulations.org/logs/677d6aa167468f9f3fc61787?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6aa167468f9f3fc61787)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp917496 is invalid. - Data generator pi_1 is invalid. - The mathematical expression pi cannot be evaluated. - Variables for mathematical expressions cannot have ids equal to the following reserved symbols: - pi ```

    Exception type: ```ValueError```| +|[01820-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01820-sbml-l3v2.xml)|pass|pass|pass|
    other only integers, slices ( : ), ellipsis ( ... ), numpy.newaxis ( None ) and integer or boolean arrays are valid indices
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677e71e83e750b90a426a2c0/download)
    [Logs](https://api.biosimulations.org/logs/677e71e83e750b90a426a2c0?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677e71e83e750b90a426a2c0)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp719891 is invalid. - Each identified SED object must have a unique id. Multiple objects have the following ids: - time```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677e71e667468f9f3fc62037/download)
    [Logs](https://api.biosimulations.org/logs/677e71e667468f9f3fc62037?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677e71e667468f9f3fc62037)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp139699 is invalid. - Each identified SED object must have a unique id. Multiple objects have the following ids: - time```

    Exception type: ```ValueError```| +|[01821-sbml-l3v2.xml](https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic\01821-sbml-l3v2.xml)|pass|pass|pass|
    other only integers, slices ( : ), ellipsis ( ... ), numpy.newaxis ( None ) and integer or boolean arrays are valid indices
    |True|
    FAIL[Download](https://api.biosimulations.org/results/677d6aaf67468f9f3fc617bd/download)
    [Logs](https://api.biosimulations.org/logs/677d6aaf67468f9f3fc617bd?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6aaf67468f9f3fc617bd)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp454022 is invalid. - Each identified SED object must have a unique id. Multiple objects have the following ids: - time```

    Exception type: ```ValueError```|
    FAIL[Download](https://api.biosimulations.org/results/677d6aad3e750b90a4269a17/download)
    [Logs](https://api.biosimulations.org/logs/677d6aad3e750b90a4269a17?includeOutput=true)
    [View](https://api.biosimulations.org/runs/677d6aad3e750b90a4269a17)

    HTTP response: 201

    Error message: ``` /root/archive.omex is not a valid COMBINE/OMEX archive. - The SED-ML file at location ./tmp684479 is invalid. - Each identified SED object must have a unique id. Multiple objects have the following ids: - time```

    Exception type: ```ValueError```| diff --git a/utils/__init__.py b/utils/__init__.py index caec12dc..6f11dd51 100644 --- a/utils/__init__.py +++ b/utils/__init__.py @@ -696,7 +696,7 @@ def run_biosimulators_remote(engine, sedml_filepath, sbml_filepath): engine_version = biosimulations.get_simulator_versions(engine) sim_dict = { - "name": "test", + "name": omex_file_name, "simulator": engine, "simulatorVersion": engine_version[engine][-1], # get the latest version "cpus": 1, @@ -723,6 +723,7 @@ def run_biosimulators_remote(engine, sedml_filepath, sbml_filepath): "logs": "", "exception": exception_message, } + return results_urls return results_urls @@ -732,7 +733,6 @@ def get_remote_results(engine, download_link, output_dir="remote_results"): extract_dir = os.path.join(os.getcwd(), output_dir, engine) shutil.unpack_archive(filepath_results, extract_dir=extract_dir) os.remove(filepath_results) - return extract_dir @@ -786,6 +786,14 @@ def run_biosimulators_docker( if "RuntimeException" in detailed_error_log: detailed_error_log_dict["status"] = "FAIL" detailed_error_log_dict["error_message"] = "Runtime Exception" + return { + "exception_message": exception_message, + "log_yml": log_yml_dict, + "detailed_error_log": detailed_error_log_dict, + } + if "RuntimeException" in detailed_error_log: + detailed_error_log_dict["status"] = "FAIL" + detailed_error_log_dict["error_message"] = "Runtime Exception" return { "exception_message": exception_message, @@ -829,6 +837,15 @@ def biosimulators_core(engine, omex_filepath, output_dir=None): command=f"-i '/root/in/{omex_file}' -o /root/out", auto_remove=True, ) + client.containers.run( + f"ghcr.io/biosimulators/{engine}", + mounts=[mount_in, mount_out], + command=f"-i '/root/in/{omex_file}' -o /root/out", + auto_remove=True, + ) + + if os.path.exists(omex_filepath_no_spaces): + os.remove(omex_filepath_no_spaces) def test_engine(engine, filename, error_categories=error_categories): @@ -840,6 +857,7 @@ def test_engine(engine, filename, error_categories=error_categories): unknown_engine = False try: if engine == "tellurium": + print(f"Running tellurium natively for {filename}", file=sys.__stdout__) tellurium.run_from_sedml_file([filename], ["-outputdir", "none"]) return "pass" # no errors # elif engine == "some_other_engine": @@ -850,6 +868,7 @@ def test_engine(engine, filename, error_categories=error_categories): except Exception as e: # return error object error_str = safe_md_string(e) + print(error_str, file=sys.__stdout__) if unknown_engine: raise RuntimeError(f"unknown engine {engine}") @@ -1197,7 +1216,7 @@ def process_engine_outcomes(self, engine, key): error_tag = error_categories[engine][pattern] errors[error_tag] += 1 cell_text = self.make_fold( - f"FAIL ({error_tag})", error_str, quote=True + "FAIL ({error_tag})", error_str, quote=True ) break @@ -1228,6 +1247,8 @@ def safe_md_string(value): .replace("\t", " ") .replace(" ", " ") .replace(" ", " ") + .replace("|", "
    ") + .replace("`", " ") ) @@ -1375,7 +1396,7 @@ def create_results_table(results, sbml_filepath, sedml_filepath, output_dir): if ( results_table.loc[results_table[ENGINE] == e, PASS_FAIL].values[0] - == f"{xfail_html}" + == "{xfail_html}" ): expected_fail = "EXPECTED FAIL

    " if len(results_table.loc[results_table[ENGINE] == e, ERROR].values[0]) > 1: From 2dc031295f9da93bcd99c2bb65ef645dcf997c4f Mon Sep 17 00:00:00 2001 From: Stella <30465823+stellaprins@users.noreply.github.com> Date: Mon, 20 Jan 2025 11:11:40 +0000 Subject: [PATCH 8/9] Feat biomodels (#115) * add omex_file_name to remote simulation dictionary instead of generic 'test' * set use_original_files to False to use ammended sedml files and remove unnecessary comment * adjust sedml files to replicate curated BioModels figures * add created omex files * update detailed biomodels tables and d1 plots * make results table names more descriptive --- .../BIOMD0000000001/BIOMD0000000001_url.omex | Bin 0 -> 8269 bytes .../BIOMD0000000001/BIOMD0000000001_url.sedml | 28 +- .../amici_autogen_plot_for_task1.pdf | Bin 11104 -> 11738 bytes .../copasi_autogen_plot_for_task1.pdf | Bin 11133 -> 12278 bytes .../pysces_autogen_plot_for_task1.pdf | Bin 11174 -> 12368 bytes .../tellurium_autogen_plot_for_task1.pdf | Bin 11134 -> 12352 bytes .../vcell_autogen_plot_for_task1.pdf | Bin 15029 -> 15102 bytes .../amici_autogen_plot_for_task1.pdf | Bin 11110 -> 11744 bytes .../copasi_autogen_plot_for_task1.pdf | Bin 11139 -> 12284 bytes .../masspy_autogen_plot_for_task1.pdf | Bin 5954 -> 5954 bytes .../pysces_autogen_plot_for_task1.pdf | Bin 11180 -> 12374 bytes .../tellurium_autogen_plot_for_task1.pdf | Bin 11113 -> 12331 bytes .../vcell_autogen_plot_for_task1.pdf | Bin 11381 -> 11422 bytes ...tors.md => results_BIOMD0000000001_url.md} | 42 +-- .../BIOMD0000000001/tests/results_local.json | 118 ++++---- .../BIOMD0000000001/tests/results_remote.json | 216 +++++++-------- .../BIOMD0000000138/BIOMD0000000138_url.omex | Bin 0 -> 5637 bytes .../BIOMD0000000138/BIOMD0000000138_url.sedml | 4 +- .../amici_autogen_plot_for_task1.pdf | Bin 5948 -> 5948 bytes .../copasi_autogen_plot_for_task1.pdf | Bin 8709 -> 11663 bytes .../pysces_autogen_plot_for_task1.pdf | Bin 5948 -> 5948 bytes .../tellurium_autogen_plot_for_task1.pdf | Bin 8708 -> 11672 bytes .../vcell_autogen_plot_for_task1.pdf | Bin 12268 -> 16477 bytes .../amici_autogen_plot_for_task1.pdf | Bin 5954 -> 5954 bytes .../copasi_autogen_plot_for_task1.pdf | Bin 8715 -> 11669 bytes .../masspy_autogen_plot_for_task1.pdf | Bin 5954 -> 5954 bytes .../pysces_autogen_plot_for_task1.pdf | Bin 5954 -> 5954 bytes .../tellurium_autogen_plot_for_task1.pdf | Bin 8714 -> 11678 bytes .../vcell_autogen_plot_for_task1.pdf | Bin 8937 -> 13133 bytes ...tors.md => results_BIOMD0000000138_url.md} | 42 +-- .../BIOMD0000000138/tests/results_local.json | 116 ++++---- .../BIOMD0000000138/tests/results_remote.json | 212 +++++++------- .../BIOMD0000000724/Theinmozhi_2018.omex | Bin 0 -> 13790 bytes .../d1_plots_local/amici_plot_10_task2.pdf | Bin 5948 -> 5948 bytes .../d1_plots_local/amici_plot_6_task2.pdf | Bin 5948 -> 5948 bytes .../d1_plots_local/amici_plot_7_task2.pdf | Bin 5948 -> 5948 bytes .../d1_plots_local/amici_plot_8_task2.pdf | Bin 5948 -> 5948 bytes .../d1_plots_local/amici_plot_9_task2.pdf | Bin 5948 -> 5948 bytes .../d1_plots_local/copasi_plot_10_task2.pdf | Bin 10320 -> 10314 bytes .../d1_plots_local/copasi_plot_6_task2.pdf | Bin 13690 -> 13687 bytes .../d1_plots_local/copasi_plot_7_task2.pdf | Bin 13661 -> 13662 bytes .../d1_plots_local/copasi_plot_8_task2.pdf | Bin 15540 -> 15532 bytes .../d1_plots_local/copasi_plot_9_task2.pdf | Bin 10204 -> 10213 bytes .../d1_plots_local/pysces_plot_10_task2.pdf | Bin 10312 -> 10312 bytes .../d1_plots_local/pysces_plot_6_task2.pdf | Bin 13684 -> 13684 bytes .../d1_plots_local/pysces_plot_7_task2.pdf | Bin 13677 -> 13677 bytes .../d1_plots_local/pysces_plot_8_task2.pdf | Bin 15525 -> 15525 bytes .../d1_plots_local/pysces_plot_9_task2.pdf | Bin 10210 -> 10210 bytes .../tellurium_plot_10_task2.pdf | Bin 9563 -> 9563 bytes .../d1_plots_local/tellurium_plot_6_task2.pdf | Bin 12915 -> 12915 bytes .../d1_plots_local/tellurium_plot_7_task2.pdf | Bin 12982 -> 12982 bytes .../d1_plots_local/tellurium_plot_8_task2.pdf | Bin 14935 -> 14935 bytes .../d1_plots_local/tellurium_plot_9_task2.pdf | Bin 9519 -> 9519 bytes .../d1_plots_remote/amici_plot_10_task2.pdf | Bin 5954 -> 5954 bytes .../d1_plots_remote/amici_plot_6_task2.pdf | Bin 5954 -> 5954 bytes .../d1_plots_remote/amici_plot_7_task2.pdf | Bin 5954 -> 5954 bytes .../d1_plots_remote/amici_plot_8_task2.pdf | Bin 5954 -> 5954 bytes .../d1_plots_remote/amici_plot_9_task2.pdf | Bin 5954 -> 5954 bytes .../d1_plots_remote/copasi_plot_10_task2.pdf | Bin 10316 -> 10322 bytes .../d1_plots_remote/copasi_plot_6_task2.pdf | Bin 13691 -> 13699 bytes .../d1_plots_remote/copasi_plot_7_task2.pdf | Bin 13669 -> 13663 bytes .../d1_plots_remote/copasi_plot_8_task2.pdf | Bin 15532 -> 15527 bytes .../d1_plots_remote/copasi_plot_9_task2.pdf | Bin 10212 -> 10218 bytes .../d1_plots_remote/masspy_plot_10_task2.pdf | Bin 5954 -> 5954 bytes .../d1_plots_remote/masspy_plot_6_task2.pdf | Bin 5954 -> 5954 bytes .../d1_plots_remote/masspy_plot_7_task2.pdf | Bin 5954 -> 5954 bytes .../d1_plots_remote/masspy_plot_8_task2.pdf | Bin 5954 -> 5954 bytes .../d1_plots_remote/masspy_plot_9_task2.pdf | Bin 5954 -> 5954 bytes .../d1_plots_remote/pysces_plot_10_task2.pdf | Bin 10318 -> 10318 bytes .../d1_plots_remote/pysces_plot_6_task2.pdf | Bin 13690 -> 13690 bytes .../d1_plots_remote/pysces_plot_7_task2.pdf | Bin 13683 -> 13683 bytes .../d1_plots_remote/pysces_plot_8_task2.pdf | Bin 15531 -> 15531 bytes .../d1_plots_remote/pysces_plot_9_task2.pdf | Bin 10216 -> 10216 bytes .../tellurium_plot_10_task2.pdf | Bin 9569 -> 9569 bytes .../tellurium_plot_6_task2.pdf | Bin 12921 -> 12921 bytes .../tellurium_plot_7_task2.pdf | Bin 12988 -> 12988 bytes .../tellurium_plot_8_task2.pdf | Bin 14970 -> 14970 bytes .../tellurium_plot_9_task2.pdf | Bin 9524 -> 9524 bytes .../d1_plots_remote/vcell_plot_10_task2.pdf | Bin 9677 -> 9677 bytes .../d1_plots_remote/vcell_plot_6_task2.pdf | Bin 13056 -> 13056 bytes .../d1_plots_remote/vcell_plot_7_task2.pdf | Bin 13135 -> 13135 bytes .../d1_plots_remote/vcell_plot_8_task2.pdf | Bin 14647 -> 14647 bytes .../d1_plots_remote/vcell_plot_9_task2.pdf | Bin 9658 -> 9658 bytes ...mulators.md => results_Theinmozhi_2018.md} | 42 +-- .../BIOMD0000000724/tests/results_local.json | 148 +++++----- .../BIOMD0000000724/tests/results_remote.json | 260 +++++++++--------- .../Adlung2021 _model_jakstat_pa.omex | Bin 0 -> 9542 bytes .../Adlung2021__model_jakstat_pa.omex | Bin 9542 -> 9542 bytes .../d1_plots_local/amici_plot_2_task2.pdf | Bin 5948 -> 5948 bytes .../d1_plots_local/copasi_plot_2_task2.pdf | Bin 12792 -> 12792 bytes .../d1_plots_local/pysces_plot_2_task2.pdf | Bin 12797 -> 12797 bytes .../d1_plots_local/tellurium_plot_2_task2.pdf | Bin 12796 -> 12796 bytes .../d1_plots_remote/amici_plot_2_task2.pdf | Bin 5954 -> 5954 bytes .../d1_plots_remote/copasi_plot_2_task2.pdf | Bin 12798 -> 12798 bytes .../d1_plots_remote/masspy_plot_2_task2.pdf | Bin 5954 -> 5954 bytes .../d1_plots_remote/pysces_plot_2_task2.pdf | Bin 12803 -> 12803 bytes .../tellurium_plot_2_task2.pdf | Bin 12822 -> 12822 bytes .../d1_plots_remote/vcell_plot_2_task2.pdf | Bin 12762 -> 12762 bytes ...=> results_Adlung2021_model_jakstat_pa.md} | 42 +-- .../BIOMD0000001077/tests/results_local.json | 116 ++++---- .../BIOMD0000001077/tests/results_remote.json | 216 +++++++-------- ...t_biomodels_compatibility_biosimulators.py | 3 +- utils/__init__.py | 2 +- 103 files changed, 803 insertions(+), 804 deletions(-) create mode 100644 BioModels/BIOMD0000000001/BIOMD0000000001_url.omex rename BioModels/BIOMD0000000001/tests/{results_compatibility_biosimulators.md => results_BIOMD0000000001_url.md} (84%) create mode 100644 BioModels/BIOMD0000000138/BIOMD0000000138_url.omex rename BioModels/BIOMD0000000138/tests/{results_compatibility_biosimulators.md => results_BIOMD0000000138_url.md} (85%) create mode 100644 BioModels/BIOMD0000000724/Theinmozhi_2018.omex rename BioModels/BIOMD0000000724/tests/{results_compatibility_biosimulators.md => results_Theinmozhi_2018.md} (87%) create mode 100644 BioModels/BIOMD0000001077/Adlung2021 _model_jakstat_pa.omex rename BioModels/BIOMD0000001077/tests/{results_compatibility_biosimulators.md => results_Adlung2021_model_jakstat_pa.md} (86%) diff --git a/BioModels/BIOMD0000000001/BIOMD0000000001_url.omex b/BioModels/BIOMD0000000001/BIOMD0000000001_url.omex new file mode 100644 index 0000000000000000000000000000000000000000..01e982da437630d5083fd80c21fd8aa92007c195 GIT binary patch literal 8269 zcmaKxWl)^al7il}ETU{9ekpKVypa5J9*mU23b|=biQEL`2# zJnij@lgE^#IdSA}f=@YMVv04bIBnLFGEN%5_jRX#x7kyP({r=>`O-EwqZ>4iacv8` zLKvRx(rN6zxiBu8mI6^y{Yaz?bss$gG_VD-S646TryNdPh@;-BsH#UR6>@>GFiQL)yEE~s>mX)I)EUyqBR^C4) z%YgXTk;Ii_sw&gghC)xM@b=f?@}rlFz{*~U+!&9(!*tJk*>~2;8c^>pb!b3p@^`_t zgXqPx&H23(_Ae>aSG$)UDqR5e|9yy4eKy^eteSBMDgcli2LO<~K7^E_nu-j^|13@; 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    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with AMICI.

    SBML and SED-ML are compatible with AMICI.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | -|
    BioNetGenhttps://docs.biosimulators.org/Biosimulators_BioNetGen/
    |
    ⚠ XFAILEXPECTED FAIL

    Only BNGL, SED-ML are compatible with BioNetGen.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    BoolNethttps://docs.biosimulators.org/Biosimulators_BoolNet/
    |
    ⚠ XFAILEXPECTED FAIL

    Only SBML-qual, SED-ML are compatible with BoolNet.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    Brian 2https://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with Brian 2.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    CBMPyhttps://docs.biosimulators.org/Biosimulators_CBMPy/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with CBMPy.

    SBML and SED-ML are compatible with CBMPy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    COBRApyhttps://docs.biosimulators.org/Biosimulators_COBRApy/
    Only allows steady state simulations
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COBRApy.

    SBML and SED-ML are compatible with COBRApy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    COPASIhttps://docs.biosimulators.org/Biosimulators_COPASI/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COPASI.

    SBML and SED-ML are compatible with COPASI.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | -|
    GillesPy2https://docs.biosimulators.org/Biosimulators_GillesPy2/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with GillesPy2.

    SBML and SED-ML are compatible with GillesPy2.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    GINsimhttps://docs.biosimulators.org/Biosimulators_GINsim/
    |
    ⚠ XFAILEXPECTED FAIL

    Only SBML-qual, SED-ML are compatible with GINsim.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    LibSBMLSimhttps://docs.biosimulators.org/Biosimulators_LibSBMLSim/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with LibSBMLSim.

    SBML and SED-ML are compatible with LibSBMLSim.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    MASSpyhttps://docs.biosimulators.org/Biosimulators_MASSpy/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with MASSpy.

    SBML and SED-ML are compatible with MASSpy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    Could not load MassModel 'BIOMD0000000001'

    ERROR TYPE:
    CombineArchiveExecutionError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | plot | | -|
    NetPyNEhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with NetPyNE.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    NEURONhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with NEURON.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    OpenCORhttps://docs.biosimulators.org/Biosimulators_OpenCOR/
    |
    ⚠ XFAILEXPECTED FAIL

    Only CellML, SED-ML are compatible with OpenCOR.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    pyNeuroMLhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with pyNeuroML.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    PySCeShttps://docs.biosimulators.org/Biosimulators_PySCeS/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with PySCeS.

    SBML and SED-ML are compatible with PySCeS.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | -|
    RBApyhttps://docs.biosimulators.org/Biosimulators_RBApy/
    |
    ⚠ XFAILEXPECTED FAIL

    Only RBApy, SED-ML are compatible with RBApy.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    Smoldynhttps://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api
    |
    ⚠ XFAILEXPECTED FAIL

    Only Smoldyn, SED-ML are compatible with Smoldyn.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    Error unknown. The log.yml containing error information was not found.

    | | | -|
    Telluriumhttps://docs.biosimulators.org/Biosimulators_tellurium/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with Tellurium.

    SBML and SED-ML are compatible with Tellurium.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | -|
    VCellhttps://github.com/virtualcell/vcell
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with VCell.

    SBML, SED-ML and BNGL are compatible with VCell.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | -|
    XPPhttps://docs.biosimulators.org/Biosimulators_XPP/
    |
    ⚠ XFAILEXPECTED FAIL

    Only XPP, SED-ML are compatible with XPP.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | \ No newline at end of file +|
    AMICIhttps://docs.biosimulators.org/Biosimulators_AMICI/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with AMICI.

    SBML and SED-ML are compatible with AMICI.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    Reached maximum number of steps

    |
    ❌ FAILERROR MESSAGE:
    Reached maximum number of steps

    | plot | plot | +|
    BioNetGenhttps://docs.biosimulators.org/Biosimulators_BioNetGen/
    |
    ⚠ XFAILEXPECTED FAIL

    Only BNGL, SED-ML are compatible with BioNetGen.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    BoolNethttps://docs.biosimulators.org/Biosimulators_BoolNet/
    |
    ⚠ XFAILEXPECTED FAIL

    Only SBML-qual, SED-ML are compatible with BoolNet.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    Brian 2https://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with Brian 2.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    CBMPyhttps://docs.biosimulators.org/Biosimulators_CBMPy/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with CBMPy.

    SBML and SED-ML are compatible with CBMPy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    COBRApyhttps://docs.biosimulators.org/Biosimulators_COBRApy/
    Only allows steady state simulations
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COBRApy.

    SBML and SED-ML are compatible with COBRApy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    COPASIhttps://docs.biosimulators.org/Biosimulators_COPASI/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COPASI.

    SBML and SED-ML are compatible with COPASI.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | +|
    GillesPy2https://docs.biosimulators.org/Biosimulators_GillesPy2/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with GillesPy2.

    SBML and SED-ML are compatible with GillesPy2.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    GINsimhttps://docs.biosimulators.org/Biosimulators_GINsim/
    |
    ⚠ XFAILEXPECTED FAIL

    Only SBML-qual, SED-ML are compatible with GINsim.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    LibSBMLSimhttps://docs.biosimulators.org/Biosimulators_LibSBMLSim/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with LibSBMLSim.

    SBML and SED-ML are compatible with LibSBMLSim.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    MASSpyhttps://docs.biosimulators.org/Biosimulators_MASSpy/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with MASSpy.

    SBML and SED-ML are compatible with MASSpy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    Could not load MassModel 'BIOMD0000000001'

    ERROR TYPE:
    CombineArchiveExecutionError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | plot | | +|
    NetPyNEhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with NetPyNE.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    NEURONhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with NEURON.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    OpenCORhttps://docs.biosimulators.org/Biosimulators_OpenCOR/
    |
    ⚠ XFAILEXPECTED FAIL

    Only CellML, SED-ML are compatible with OpenCOR.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    pyNeuroMLhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with pyNeuroML.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    PySCeShttps://docs.biosimulators.org/Biosimulators_PySCeS/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with PySCeS.

    SBML and SED-ML are compatible with PySCeS.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | +|
    RBApyhttps://docs.biosimulators.org/Biosimulators_RBApy/
    |
    ⚠ XFAILEXPECTED FAIL

    Only RBApy, SED-ML are compatible with RBApy.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    Smoldynhttps://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api
    |
    ⚠ XFAILEXPECTED FAIL

    Only Smoldyn, SED-ML are compatible with Smoldyn.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    Error unknown. The log.yml containing error information was not found.

    | | | +|
    Telluriumhttps://docs.biosimulators.org/Biosimulators_tellurium/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with Tellurium.

    SBML and SED-ML are compatible with Tellurium.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | +|
    VCellhttps://github.com/virtualcell/vcell
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with VCell.

    BNGL, SBML and SED-ML are compatible with VCell.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | +|
    XPPhttps://docs.biosimulators.org/Biosimulators_XPP/
    |
    ⚠ XFAILEXPECTED FAIL

    Only XPP, SED-ML are compatible with XPP.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | \ No newline at end of file diff --git a/BioModels/BIOMD0000000001/tests/results_local.json b/BioModels/BIOMD0000000001/tests/results_local.json index 6d3fc9cb..52a5788a 100644 --- a/BioModels/BIOMD0000000001/tests/results_local.json +++ b/BioModels/BIOMD0000000001/tests/results_local.json @@ -2,12 +2,12 @@ "amici": { "exception_message": "", "log_yml": { - "duration": 18.20733, + "duration": 101.597932, "exception": null, "output": "", "sedDocuments": [ { - "duration": 17.799615, + "duration": 100.767004, "exception": null, "location": "BIOMD0000000001_url.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", @@ -279,7 +279,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.307685, + "duration": 16.255451, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -337,7 +337,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.385686, + "duration": 6.551666, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -350,10 +350,10 @@ "tasks": [ { "algorithm": "KISAO_0000496", - "duration": 16.938878, + "duration": 77.741589, "exception": null, "id": "task1", - "output": "", + "output": "2025-01-14 11:39:32.867 - amici.swig_wrappers - ERROR - [OTHER] AMICI simulation failed: Reached maximum number of steps 10000 before reaching tout at t=1769.08.\r\n2025-01-14 11:39:32.868 - amici.swig_wrappers - DEBUG - [BACKTRACE] The previous error occurred at:\r\n2 0x7f36e520fa8b /usr/local/lib/python3.11/site-packages/amici/_amici.cpython-311-x86_64-linux-gnu.so(+0xb5a8b) [0x7f36e520fa8b]\r\n3 0x7f36e5303262 amici::Solver::run(double) const + 34\r\n4 0x7f36e533b5d0 amici::ForwardProblem::workForwardProblem() + 1728\r\n5 0x7f36e52ef763 amici::runAmiciSimulation(amici::Solver&, amici::ExpData const*, amici::Model&, bool) + 435\r\n6 0x7f36e5299280 /usr/local/lib/python3.11/site-packages/amici/_amici.cpython-311-x86_64-linux-gnu.so(+0x13f\r\n", "simulatorDetails": [ { "key": "solver", @@ -382,12 +382,12 @@ "brian2": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/brian2' returned non-zero exit status 1", "log_yml": { - "duration": 0.043407, + "duration": 0.058421, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "WARNING /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp_fz72ych/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n [py.warnings]\r\npyNeuroML >>> WARNING - /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp_fz72ych/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n\r\n", + "output": "WARNING /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpxw4_t7xz/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n [py.warnings]\r\npyNeuroML >>> WARNING - /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpxw4_t7xz/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -397,12 +397,12 @@ "bionetgen": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/bionetgen' returned non-zero exit status 1", "log_yml": { - "duration": 0.134905, + "duration": 0.192712, "exception": { "message": "`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp206cqzzw/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp298rr3tg/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -412,12 +412,12 @@ "boolnet": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/boolnet' returned non-zero exit status 1", "log_yml": { - "duration": 0.182631, + "duration": 0.196481, "exception": { "message": "`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmphfkbf5he/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` may be invalid.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpn4pj7ckr/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` may be invalid.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -427,12 +427,12 @@ "cbmpy": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/cbmpy' returned non-zero exit status 1", "log_yml": { - "duration": 0.223897, + "duration": 0.265899, "exception": { "message": "`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "\r\nINFO: No xlwt module available, Excel spreadsheet creation disabled\r\n\r\n\r\n\r\nNo module named 'cplex'\r\n\r\n\r\n\r\nCPLEX not available\r\n\r\n*****\r\nUsing GLPK\r\n*****\r\n\r\n\r\nINFO: No xlrd module available, Excel spreadsheet reading disabled\r\n\r\nCBMPy environment\r\n******************\r\nRevision: r689\r\n\r\n\r\n***********************************************************************\r\n* Welcome to CBMPy (0.7.25) - PySCeS Constraint Based Modelling *\r\n* http://cbmpy.sourceforge.net *\r\n* Copyright(C) Brett G. Olivier 2014 - 2019 *\r\n* Dept. of Systems Bioinformatics *\r\n* Vrije Universiteit Amsterdam, Amsterdam, The Netherlands *\r\n* CBMPy is developed as part of the BeBasic MetaToolKit Project *\r\n* Distributed under the GNU GPL v 3.0 licence, see *\r\n* LICENCE (supplied with this release) for details *\r\n***********************************************************************\r\n\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpha66extc/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "\r\nINFO: No xlwt module available, Excel spreadsheet creation disabled\r\n\r\n\r\n\r\nNo module named 'cplex'\r\n\r\n\r\n\r\nCPLEX not available\r\n\r\n*****\r\nUsing GLPK\r\n*****\r\n\r\n\r\nINFO: No xlrd module available, Excel spreadsheet reading disabled\r\n\r\nCBMPy environment\r\n******************\r\nRevision: r689\r\n\r\n\r\n***********************************************************************\r\n* Welcome to CBMPy (0.7.25) - PySCeS Constraint Based Modelling *\r\n* http://cbmpy.sourceforge.net *\r\n* Copyright(C) Brett G. Olivier 2014 - 2019 *\r\n* Dept. of Systems Bioinformatics *\r\n* Vrije Universiteit Amsterdam, Amsterdam, The Netherlands *\r\n* CBMPy is developed as part of the BeBasic MetaToolKit Project *\r\n* Distributed under the GNU GPL v 3.0 licence, see *\r\n* LICENCE (supplied with this release) for details *\r\n***********************************************************************\r\n\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpyfbf0dnm/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -442,12 +442,12 @@ "cobrapy": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/cobrapy' returned non-zero exit status 1", "log_yml": { - "duration": 0.158545, + "duration": 0.188745, "exception": { "message": "`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpopgzkji3/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpprhrzcqy/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -457,12 +457,12 @@ "copasi": { "exception_message": "", "log_yml": { - "duration": 1.431043, + "duration": 22.368224, "exception": null, - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp9c464apg/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp9c464apg/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpekd_06jz/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpekd_06jz/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [ { - "duration": 1.099564, + "duration": 21.936623, "exception": null, "location": "BIOMD0000000001_url.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", @@ -734,7 +734,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.274029, + "duration": 13.13731, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -792,7 +792,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.501315, + "duration": 6.44331, "exception": null, "id": "autogen_plot_for_task1", "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", @@ -805,10 +805,10 @@ "tasks": [ { "algorithm": "KISAO_0000560", - "duration": 0.148264, + "duration": 2.109923, "exception": null, "id": "task1", - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task1_kf_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_B__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_t2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_D__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_comp1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ILL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ALL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_I__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_IL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_AL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_A__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React13__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `BIOMD0000000001_url` may be invalid.\r\n - The model file `/tmp/tmp9c464apg/./BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'LSODA/LSODAR hybrid method' (KISAO_0000560) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task1_kf_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_B__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_I__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_IL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_t2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_A__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ILL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_AL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_comp1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_D__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ALL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_16__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `BIOMD0000000001_url` may be invalid.\r\n - The model file `/tmp/tmpekd_06jz/./BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'LSODA/LSODAR hybrid method' (KISAO_0000560) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n", "simulatorDetails": [ { "key": "methodName", @@ -833,12 +833,12 @@ "gillespy2": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/gillespy2' returned non-zero exit status 1", "log_yml": { - "duration": 0.152, + "duration": 0.204915, "exception": { "message": "`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpkdmso8af/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpuu8mdvhm/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -848,12 +848,12 @@ "ginsim": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/ginsim' returned non-zero exit status 1", "log_yml": { - "duration": 0.128864, + "duration": 0.176716, "exception": { "message": "`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp3vbg7tr5/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` may be invalid.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpjjdopgwn/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` may be invalid.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -863,12 +863,12 @@ "libsbmlsim": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/libsbmlsim' returned non-zero exit status 1", "log_yml": { - "duration": 0.179679, + "duration": 0.205327, "exception": { "message": "`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpmn6h9csd/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` may be invalid.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp40zv7ave/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` may be invalid.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -878,12 +878,12 @@ "masspy": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/masspy' returned non-zero exit status 1", "log_yml": { - "duration": 0.17974, + "duration": 0.341986, "exception": { "message": "`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mSedmlFeatureNotSupportedWarning\u001b[0m: \u001b[33m`/tmp/tmpt46pzdhi/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mSedmlFeatureNotSupportedWarning\u001b[0m: \u001b[33m`/tmp/tmpm184wwzu/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -893,7 +893,7 @@ "netpyne": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/netpyne' returned non-zero exit status 1", "log_yml": { - "duration": 0.056066, + "duration": 0.054944, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -908,12 +908,12 @@ "neuron": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/neuron' returned non-zero exit status 1", "log_yml": { - "duration": 0.042372, + "duration": 0.055616, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpr_7h14xr/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpry23fg44/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -923,12 +923,12 @@ "opencor": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/opencor' returned non-zero exit status 1", "log_yml": { - "duration": 0.080298, + "duration": 0.095632, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpmmw6_5dk/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", + "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpuk6q30i9/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -938,12 +938,12 @@ "pyneuroml": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/pyneuroml' returned non-zero exit status 1", "log_yml": { - "duration": 0.045287, + "duration": 0.052102, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpdaqw5ior/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpbd5_909q/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -953,15 +953,15 @@ "pysces": { "exception_message": "", "log_yml": { - "duration": 1.854252, + "duration": 24.465236, "exception": null, - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpm8x6ierx/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpm8x6ierx/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpvsepco8u/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpvsepco8u/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [ { - "duration": 1.454957, + "duration": 24.038673, "exception": null, "location": "BIOMD0000000001_url.sedml", - "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V4\r\nINFO: Rescaling compartment with size 1e-16 to 1.0\r\ncsymbol time defined as \"time\" in event \r\nInfo: single compartment model: locating \"React0\" in default compartment\r\nInfo: single compartment model: locating \"React1\" in default compartment\r\nInfo: single compartment model: locating \"React2\" in default compartment\r\nInfo: single compartment model: locating \"React3\" in default compartment\r\nInfo: single compartment model: locating \"React4\" in default compartment\r\nInfo: single compartment model: locating \"React5\" in default compartment\r\nInfo: single compartment model: locating \"React6\" in default compartment\r\nInfo: single compartment model: locating \"React7\" in default compartment\r\nInfo: single compartment model: locating \"React8\" in default compartment\r\nInfo: single compartment model: locating \"React9\" in default compartment\r\nInfo: single compartment model: locating \"React10\" in default compartment\r\nInfo: single compartment model: locating \"React11\" in default compartment\r\nInfo: single compartment model: locating \"React12\" in default compartment\r\nInfo: single compartment model: locating \"React13\" in default compartment\r\nInfo: single compartment model: locating \"React14\" in default compartment\r\nInfo: single compartment model: locating \"React15\" in default compartment\r\nInfo: single compartment model: locating \"React16\" in default compartment\r\nWriting file: /tmp/tmptkw82oao.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpbq29rf7n.xml\r\nout: /tmp/tmptkw82oao.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmptkw82oao.psc loading ..... \r\nParsing file: /tmp/tmptkw82oao.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"t2\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . done.\r\nCalculating K matrix . . . . . . . done.\r\n \r\nEvent(s) detected.\r\n\r\nINFO: events detected and we have Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\nCVODE time for 1001 points: 0.03949284553527832\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V4\r\nINFO: Rescaling compartment with size 1e-16 to 1.0\r\ncsymbol time defined as \"time\" in event \r\nInfo: single compartment model: locating \"React0\" in default compartment\r\nInfo: single compartment model: locating \"React1\" in default compartment\r\nInfo: single compartment model: locating \"React2\" in default compartment\r\nInfo: single compartment model: locating \"React3\" in default compartment\r\nInfo: single compartment model: locating \"React4\" in default compartment\r\nInfo: single compartment model: locating \"React5\" in default compartment\r\nInfo: single compartment model: locating \"React6\" in default compartment\r\nInfo: single compartment model: locating \"React7\" in default compartment\r\nInfo: single compartment model: locating \"React8\" in default compartment\r\nInfo: single compartment model: locating \"React9\" in default compartment\r\nInfo: single compartment model: locating \"React10\" in default compartment\r\nInfo: single compartment model: locating \"React11\" in default compartment\r\nInfo: single compartment model: locating \"React12\" in default compartment\r\nInfo: single compartment model: locating \"React13\" in default compartment\r\nInfo: single compartment model: locating \"React14\" in default compartment\r\nInfo: single compartment model: locating \"React15\" in default compartment\r\nInfo: single compartment model: locating \"React16\" in default compartment\r\nWriting file: /tmp/tmpim6c68nw.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmp79owik7g.xml\r\nout: /tmp/tmpim6c68nw.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmpim6c68nw.psc loading ..... \r\nParsing file: /tmp/tmpim6c68nw.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"t2\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . done.\r\nCalculating K matrix . . . . . . . done.\r\n \r\nEvent(s) detected.\r\n\r\nINFO: events detected and we have Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nevent RemovalACh is evaluating at 20.0998\r\nevent RemovalACh is assigning at 20.0998 (delay=0.0)\r\nexecuting RemovalACh\r\nCVODE time for 50001 points: 2.783015489578247\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", "outputs": [ { "dataSets": [ @@ -1230,7 +1230,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.516309, + "duration": 14.239757, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -1288,7 +1288,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.396995, + "duration": 6.510308, "exception": null, "id": "autogen_plot_for_task1", "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", @@ -1301,10 +1301,10 @@ "tasks": [ { "algorithm": "KISAO_0000019", - "duration": 0.259261, + "duration": 3.07945, "exception": null, "id": "task1", - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task1_kr_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_A__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ALL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_AL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ILL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_B__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_t2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_D__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_comp1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_IL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_I__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task1_React7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_A__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_I__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_t2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_AL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_comp1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_B__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_D__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_IL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ALL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ILL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_0__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n", "simulatorDetails": [ { "key": "method", @@ -1341,12 +1341,12 @@ "rbapy": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/rbapy' returned non-zero exit status 1", "log_yml": { - "duration": 0.161602, + "duration": 0.207671, "exception": { "message": "`/root/in/BIOMD0000000001_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpu_k9a9mv/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` may be invalid.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp6xb2vqje/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` may be invalid.\r\n - Model `BIOMD0000000001_url` may be invalid.\r\n - The model file `BIOMD0000000001_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_1 * BL - kr_1 * BLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_2 * BLL - kr_2 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_3 * A - kr_3 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_4 * AL - kr_4 * ALL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_5 * B - kr_5 * A)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_6 * BL - kr_6 * AL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_7 * I - kr_7 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_8 * IL - kr_8 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_9 * A - kr_9 * I)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_10 * AL - kr_10 * IL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_11 * ALL - kr_11 * ILL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_12 * D - kr_12 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_13 * DL - kr_13 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_14 * I - kr_14 * D)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_15 * IL - kr_15 * DL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_16 * ILL - kr_16 * DLL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gt(time, t2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_0' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_3' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_4' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_6' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_7' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_8' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_9' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_10' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_11' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_12' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_13' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_14' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_15' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kr_16' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 't2' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1361,12 +1361,12 @@ "tellurium": { "exception_message": "", "log_yml": { - "duration": 1.585119, + "duration": 21.185007, "exception": null, - "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmplpusfrgh/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmplpusfrgh/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n", + "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmp720n4_ci/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` has warnings.\r\n - Model `BIOMD0000000001_url` has warnings.\r\n - The model file `BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmp720n4_ci/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n", "sedDocuments": [ { - "duration": 1.032478, + "duration": 20.680741, "exception": null, "location": "BIOMD0000000001_url.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", @@ -1638,7 +1638,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.300394, + "duration": 13.365233, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -1696,7 +1696,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.418293, + "duration": 6.350474, "exception": null, "id": "autogen_plot_for_task1", "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning:\r\n\r\n\u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n\r\n", @@ -1709,10 +1709,10 @@ "tasks": [ { "algorithm": "KISAO_0000019", - "duration": 0.150004, + "duration": 0.653562, "exception": null, "id": "task1", - "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33m- Variable `auto_dg_for_task1_React9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ILL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_B__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_A__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_comp1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_IL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ALL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_AL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_I__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_D__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_t2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_12__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mModel `BIOMD0000000001_url` may be invalid.\r\n - The model file `/tmp/tmplpusfrgh/./BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning:\r\n\r\n\u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n\r\n", + "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33m- Variable `auto_dg_for_task1_kf_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_AL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_D__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_comp1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_DLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_9__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_t2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_IL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_10__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ILL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_BLL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kr_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_I__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_A__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ALL__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_React8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_B__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kf_15__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mModel `BIOMD0000000001_url` may be invalid.\r\n - The model file `/tmp/tmp720n4_ci/./BIOMD0000000001_url.xml` has warnings.\r\n - 26 warnings of type SBML unit consistency (99505). The following is the first warning at line 467, column 8:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'comp1 * (kf_0 * B - kr_0 * BL)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 35 warnings of type Modeling practice (80701). The following is the first warning at line 406, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kf_0' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning:\r\n\r\n\u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n\r\n", "simulatorDetails": [ { "key": "method", @@ -1785,7 +1785,7 @@ "vcell": { "exception_message": "", "log_yml": { - "duration": 13, + "duration": 52, "exception": null, "output": "Processing BIOMD0000000001_url.sedml. Done", "sedDocuments": [ @@ -2133,7 +2133,7 @@ "tasks": [ { "algorithm": "KISAO_0000019", - "duration": 1, + "duration": 17, "exception": null, "id": "task1", "output": "Initializing simulation job 0 ... done. Starting simulation... done.", @@ -2152,12 +2152,12 @@ "xpp": { "exception_message": "Command '-i '/root/in/BIOMD0000000001_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/xpp' returned non-zero exit status 1", "log_yml": { - "duration": 0.043889, + "duration": 0.064717, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp4ib7glpc/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmprvgfa4ms/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" diff --git a/BioModels/BIOMD0000000001/tests/results_remote.json b/BioModels/BIOMD0000000001/tests/results_remote.json index 5243231b..467c644d 100644 --- a/BioModels/BIOMD0000000001/tests/results_remote.json +++ b/BioModels/BIOMD0000000001/tests/results_remote.json @@ -1,16 +1,16 @@ { "amici": { "response": 201, - "view": "https://api.biosimulations.org/runs/6759986e707aa641046207d2", - "download": "https://api.biosimulations.org/results/6759986e707aa641046207d2/download", - "logs": "https://api.biosimulations.org/logs/6759986e707aa641046207d2?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864b89ba5a3f02b9f2f0c9", + "download": "https://api.biosimulations.org/results/67864b89ba5a3f02b9f2f0c9/download", + "logs": "https://api.biosimulations.org/logs/67864b89ba5a3f02b9f2f0c9?includeOutput=true", "log_yml": { - "duration": 34.743231, + "duration": 85.884143, "exception": null, "output": "", "sedDocuments": [ { - "duration": 34.294082, + "duration": 85.415945, "exception": null, "location": "BIOMD0000000001_url.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", @@ -282,7 +282,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.412893, + "duration": 12.83531, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -340,7 +340,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.488225, + "duration": 5.703909, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -353,10 +353,10 @@ "tasks": [ { "algorithm": "KISAO_0000496", - "duration": 33.225571, + "duration": 66.725409, "exception": null, "id": "task1", - "output": "", + "output": "2025-01-14 06:34:44.022 - amici.swig_wrappers - ERROR - [OTHER] AMICI simulation failed: Reached maximum number of steps 10000 before reaching tout at t=1769.08.\r\n2025-01-14 06:34:44.023 - amici.swig_wrappers - DEBUG - [BACKTRACE] The previous error occurred at:\r\n2 0x7ffff3462a8b /usr/local/lib/python3.11/site-packages/amici/_amici.cpython-311-x86_64-linux-gnu.so(+0xb5a8b) [0x7ffff3462a8b]\r\n3 0x7ffff3556262 amici::Solver::run(double) const + 34\r\n4 0x7ffff358e5d0 amici::ForwardProblem::workForwardProblem() + 1728\r\n5 0x7ffff3542763 amici::runAmiciSimulation(amici::Solver&, amici::ExpData const*, amici::Model&, bool) + 435\r\n6 0x7ffff34ec280 /usr/local/lib/python3.11/site-packages/amici/_amici.cpython-311-x86_64-linux-gnu.so(+0x13f\r\n", "simulatorDetails": [ { "key": "solver", @@ -383,11 +383,11 @@ }, "brian2": { "response": 201, - "view": "https://api.biosimulations.org/runs/6759986f707aa641046207e8", - "download": "https://api.biosimulations.org/results/6759986f707aa641046207e8/download", - "logs": "https://api.biosimulations.org/logs/6759986f707aa641046207e8?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864b8bba5a3f02b9f2f0cc", + "download": "https://api.biosimulations.org/results/67864b8bba5a3f02b9f2f0cc/download", + "logs": "https://api.biosimulations.org/logs/67864b8bba5a3f02b9f2f0cc?includeOutput=true", "log_yml": { - "duration": 0.062282, + "duration": 0.054901, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -400,11 +400,11 @@ }, "bionetgen": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599874c3054f763d58534c", - "download": "https://api.biosimulations.org/results/67599874c3054f763d58534c/download", - "logs": "https://api.biosimulations.org/logs/67599874c3054f763d58534c?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864b8d1f52f47f628b5680", + "download": "https://api.biosimulations.org/results/67864b8d1f52f47f628b5680/download", + "logs": "https://api.biosimulations.org/logs/67864b8d1f52f47f628b5680?includeOutput=true", "log_yml": { - "duration": 0.228823, + "duration": 0.179585, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -417,11 +417,11 @@ }, "boolnet": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599878707aa6410462085c", - "download": "https://api.biosimulations.org/results/67599878707aa6410462085c/download", - "logs": "https://api.biosimulations.org/logs/67599878707aa6410462085c?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864b8e1f52f47f628b5683", + "download": "https://api.biosimulations.org/results/67864b8e1f52f47f628b5683/download", + "logs": "https://api.biosimulations.org/logs/67864b8e1f52f47f628b5683?includeOutput=true", "log_yml": { - "duration": 0.227526, + "duration": 0.179865, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -434,11 +434,11 @@ }, "cbmpy": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599879c3054f763d5853ae", - "download": "https://api.biosimulations.org/results/67599879c3054f763d5853ae/download", - "logs": "https://api.biosimulations.org/logs/67599879c3054f763d5853ae?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864b90167dc18b5b247610", + "download": "https://api.biosimulations.org/results/67864b90167dc18b5b247610/download", + "logs": "https://api.biosimulations.org/logs/67864b90167dc18b5b247610?includeOutput=true", "log_yml": { - "duration": 0.370103, + "duration": 0.279523, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -451,11 +451,11 @@ }, "cobrapy": { "response": 201, - "view": "https://api.biosimulations.org/runs/6759987b9fa297efdca4ce9c", - "download": "https://api.biosimulations.org/results/6759987b9fa297efdca4ce9c/download", - "logs": "https://api.biosimulations.org/logs/6759987b9fa297efdca4ce9c?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864b92ba5a3f02b9f2f0d6", + "download": "https://api.biosimulations.org/results/67864b92ba5a3f02b9f2f0d6/download", + "logs": "https://api.biosimulations.org/logs/67864b92ba5a3f02b9f2f0d6?includeOutput=true", "log_yml": { - "duration": 0.224675, + "duration": 0.181367, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -468,16 +468,16 @@ }, "copasi": { "response": 201, - "view": "https://api.biosimulations.org/runs/6759987d707aa64104620898", - "download": "https://api.biosimulations.org/results/6759987d707aa64104620898/download", - "logs": "https://api.biosimulations.org/logs/6759987d707aa64104620898?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864b951f52f47f628b5688", + "download": "https://api.biosimulations.org/results/67864b951f52f47f628b5688/download", + "logs": "https://api.biosimulations.org/logs/67864b951f52f47f628b5688?includeOutput=true", "log_yml": { - "duration": 1.910214, + "duration": 25.081208, "exception": null, "output": "", "sedDocuments": [ { - "duration": 1.538635, + "duration": 24.729735, "exception": null, "location": "BIOMD0000000001_url.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...woohoo!\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", @@ -749,7 +749,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.428548, + "duration": 15.39297, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -807,7 +807,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.668095, + "duration": 6.737561, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -820,7 +820,7 @@ "tasks": [ { "algorithm": "KISAO_0000560", - "duration": 0.280451, + "duration": 2.362862, "exception": null, "id": "task1", "output": "", @@ -846,11 +846,11 @@ }, "gillespy2": { "response": 201, - "view": "https://api.biosimulations.org/runs/6759987f707aa641046208a7", - "download": "https://api.biosimulations.org/results/6759987f707aa641046208a7/download", - "logs": "https://api.biosimulations.org/logs/6759987f707aa641046208a7?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864b971f52f47f628b568f", + "download": "https://api.biosimulations.org/results/67864b971f52f47f628b568f/download", + "logs": "https://api.biosimulations.org/logs/67864b971f52f47f628b568f?includeOutput=true", "log_yml": { - "duration": 0.230086, + "duration": 0.185696, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -863,11 +863,11 @@ }, "ginsim": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599880707aa641046208c9", - "download": "https://api.biosimulations.org/results/67599880707aa641046208c9/download", - "logs": "https://api.biosimulations.org/logs/67599880707aa641046208c9?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864b981f52f47f628b5694", + "download": "https://api.biosimulations.org/results/67864b981f52f47f628b5694/download", + "logs": "https://api.biosimulations.org/logs/67864b981f52f47f628b5694?includeOutput=true", "log_yml": { - "duration": 0.219107, + "duration": 0.203589, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -880,11 +880,11 @@ }, "libsbmlsim": { "response": 201, - "view": "https://api.biosimulations.org/runs/675998829fa297efdca4cf0b", - "download": "https://api.biosimulations.org/results/675998829fa297efdca4cf0b/download", - "logs": "https://api.biosimulations.org/logs/675998829fa297efdca4cf0b?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864b9aba5a3f02b9f2f0dc", + "download": "https://api.biosimulations.org/results/67864b9aba5a3f02b9f2f0dc/download", + "logs": "https://api.biosimulations.org/logs/67864b9aba5a3f02b9f2f0dc?includeOutput=true", "log_yml": { - "duration": 0.224774, + "duration": 0.1818, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -897,11 +897,11 @@ }, "masspy": { "response": 201, - "view": "https://api.biosimulations.org/runs/675998849fa297efdca4cf2a", - "download": "https://api.biosimulations.org/results/675998849fa297efdca4cf2a/download", - "logs": "https://api.biosimulations.org/logs/675998849fa297efdca4cf2a?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864b9cba5a3f02b9f2f0e0", + "download": "https://api.biosimulations.org/results/67864b9cba5a3f02b9f2f0e0/download", + "logs": "https://api.biosimulations.org/logs/67864b9cba5a3f02b9f2f0e0?includeOutput=true", "log_yml": { - "duration": 1.596004, + "duration": 1.270141, "exception": { "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n Could not load MassModel 'BIOMD0000000001'", "type": "CombineArchiveExecutionError" @@ -909,7 +909,7 @@ "output": "", "sedDocuments": [ { - "duration": 0.997565, + "duration": 0.806946, "exception": { "message": "The SED document did not execute successfully:\n\n Could not load MassModel 'BIOMD0000000001'", "type": "SedmlExecutionError" @@ -1184,7 +1184,7 @@ "status": "SKIPPED" } ], - "duration": 0.058288, + "duration": 0.052818, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -1242,7 +1242,7 @@ "status": "SKIPPED" } ], - "duration": 0.341506, + "duration": 0.270129, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -1255,7 +1255,7 @@ "tasks": [ { "algorithm": null, - "duration": 0.374972, + "duration": 0.291643, "exception": { "message": "Could not load MassModel 'BIOMD0000000001'", "type": "MassSimulationError" @@ -1275,11 +1275,11 @@ }, "netpyne": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599885c3054f763d585469", - "download": "https://api.biosimulations.org/results/67599885c3054f763d585469/download", - "logs": "https://api.biosimulations.org/logs/67599885c3054f763d585469?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864b9eba5a3f02b9f2f0e6", + "download": "https://api.biosimulations.org/results/67864b9eba5a3f02b9f2f0e6/download", + "logs": "https://api.biosimulations.org/logs/67864b9eba5a3f02b9f2f0e6?includeOutput=true", "log_yml": { - "duration": 0.078228, + "duration": 0.050973, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -1292,11 +1292,11 @@ }, "neuron": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599887707aa64104620929", - "download": "https://api.biosimulations.org/results/67599887707aa64104620929/download", - "logs": "https://api.biosimulations.org/logs/67599887707aa64104620929?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864b9fba5a3f02b9f2f0f4", + "download": "https://api.biosimulations.org/results/67864b9fba5a3f02b9f2f0f4/download", + "logs": "https://api.biosimulations.org/logs/67864b9fba5a3f02b9f2f0f4?includeOutput=true", "log_yml": { - "duration": 0.049125, + "duration": 0.077206, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -1309,16 +1309,16 @@ }, "opencor": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599889707aa64104620949", - "download": "https://api.biosimulations.org/results/67599889707aa64104620949/download", - "logs": "https://api.biosimulations.org/logs/67599889707aa64104620949?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864ba11f52f47f628b56a9", + "download": "https://api.biosimulations.org/results/67864ba11f52f47f628b56a9/download", + "logs": "https://api.biosimulations.org/logs/67864ba11f52f47f628b56a9?includeOutput=true", "log_yml": { - "duration": 0.042642, + "duration": 0.034826, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpzxwfq98w/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", + "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp0vcu99m4/./BIOMD0000000001_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1326,11 +1326,11 @@ }, "pyneuroml": { "response": 201, - "view": "https://api.biosimulations.org/runs/6759988a9fa297efdca4cf90", - "download": "https://api.biosimulations.org/results/6759988a9fa297efdca4cf90/download", - "logs": "https://api.biosimulations.org/logs/6759988a9fa297efdca4cf90?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864ba21f52f47f628b56ba", + "download": "https://api.biosimulations.org/results/67864ba21f52f47f628b56ba/download", + "logs": "https://api.biosimulations.org/logs/67864ba21f52f47f628b56ba?includeOutput=true", "log_yml": { - "duration": 0.056714, + "duration": 0.049941, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -1343,19 +1343,19 @@ }, "pysces": { "response": 201, - "view": "https://api.biosimulations.org/runs/6759988d707aa6410462098c", - "download": "https://api.biosimulations.org/results/6759988d707aa6410462098c/download", - "logs": "https://api.biosimulations.org/logs/6759988d707aa6410462098c?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864ba41f52f47f628b56c2", + "download": "https://api.biosimulations.org/results/67864ba41f52f47f628b56c2/download", + "logs": "https://api.biosimulations.org/logs/67864ba41f52f47f628b56c2?includeOutput=true", "log_yml": { - "duration": 1.865952, + "duration": 24.519283, "exception": null, "output": "libtk8.6.so: cannot open shared object file: No such file or directory\r\n\r\nPySCeS defaults to matplotlib's TKagg backend if not specified in the user configuration file, set \"matplotlib_backend = \" \r\nMatplotlib interface loaded (pysces.plt.m)\r\nPitcon routines available\r\nNLEQ2 routines available\r\nSBML support available\r\nYou are using NumPy (2.1.2) with SciPy (1.14.1)\r\nAssimulo CVode available\r\nRateChar is available\r\nParallel scanner is available\r\n\r\nPySCeS environment\r\n******************\r\npysces.model_dir = /home/FCAM/crbmapi/Pysces/psc\r\npysces.output_dir = /home/FCAM/crbmapi/Pysces\r\n\r\n\r\n***********************************************************************\r\n* Welcome to PySCeS (1.2.2) - Python Simulator for Cellular Systems *\r\n* http://pysces.sourceforge.net *\r\n* Copyright(C) B.G. Olivier, J.M. Rohwer, J.-H.S. Hofmeyr, 2004-2024 *\r\n* Triple-J Group for Molecular Cell Physiology *\r\n* Stellenbosch University, ZA and VU University Amsterdam, NL *\r\n* PySCeS is distributed under the PySCeS (BSD style) licence, see *\r\n* LICENCE.txt (supplied with this release) for details *\r\n* Please cite PySCeS with: doi:10.1093/bioinformatics/bti046 *\r\n***********************************************************************\r\n", "sedDocuments": [ { - "duration": 1.473278, + "duration": 24.161034, "exception": null, "location": "BIOMD0000000001_url.sedml", - "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V4\r\nINFO: Rescaling compartment with size 1e-16 to 1.0\r\ncsymbol time defined as \"time\" in event \r\nInfo: single compartment model: locating \"React0\" in default compartment\r\nInfo: single compartment model: locating \"React1\" in default compartment\r\nInfo: single compartment model: locating \"React2\" in default compartment\r\nInfo: single compartment model: locating \"React3\" in default compartment\r\nInfo: single compartment model: locating \"React4\" in default compartment\r\nInfo: single compartment model: locating \"React5\" in default compartment\r\nInfo: single compartment model: locating \"React6\" in default compartment\r\nInfo: single compartment model: locating \"React7\" in default compartment\r\nInfo: single compartment model: locating \"React8\" in default compartment\r\nInfo: single compartment model: locating \"React9\" in default compartment\r\nInfo: single compartment model: locating \"React10\" in default compartment\r\nInfo: single compartment model: locating \"React11\" in default compartment\r\nInfo: single compartment model: locating \"React12\" in default compartment\r\nInfo: single compartment model: locating \"React13\" in default compartment\r\nInfo: single compartment model: locating \"React14\" in default compartment\r\nInfo: single compartment model: locating \"React15\" in default compartment\r\nInfo: single compartment model: locating \"React16\" in default compartment\r\nWriting file: /tmp/tmpg5lywq8j.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpii1g4uod.xml\r\nout: /tmp/tmpg5lywq8j.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmpg5lywq8j.psc loading ..... \r\nParsing file: /tmp/tmpg5lywq8j.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"t2\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . done.\r\nCalculating K matrix . . . . . . . done.\r\n \r\nEvent(s) detected.\r\n\r\nINFO: events detected and we have Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\nCVODE time for 1001 points: 0.07738018035888672\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V4\r\nINFO: Rescaling compartment with size 1e-16 to 1.0\r\ncsymbol time defined as \"time\" in event \r\nInfo: single compartment model: locating \"React0\" in default compartment\r\nInfo: single compartment model: locating \"React1\" in default compartment\r\nInfo: single compartment model: locating \"React2\" in default compartment\r\nInfo: single compartment model: locating \"React3\" in default compartment\r\nInfo: single compartment model: locating \"React4\" in default compartment\r\nInfo: single compartment model: locating \"React5\" in default compartment\r\nInfo: single compartment model: locating \"React6\" in default compartment\r\nInfo: single compartment model: locating \"React7\" in default compartment\r\nInfo: single compartment model: locating \"React8\" in default compartment\r\nInfo: single compartment model: locating \"React9\" in default compartment\r\nInfo: single compartment model: locating \"React10\" in default compartment\r\nInfo: single compartment model: locating \"React11\" in default compartment\r\nInfo: single compartment model: locating \"React12\" in default compartment\r\nInfo: single compartment model: locating \"React13\" in default compartment\r\nInfo: single compartment model: locating \"React14\" in default compartment\r\nInfo: single compartment model: locating \"React15\" in default compartment\r\nInfo: single compartment model: locating \"React16\" in default compartment\r\nWriting file: /tmp/tmpw_jvijcu.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpe4n8mlnl.xml\r\nout: /tmp/tmpw_jvijcu.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmpw_jvijcu.psc loading ..... \r\nParsing file: /tmp/tmpw_jvijcu.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"t2\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . done.\r\nCalculating K matrix . . . . . . . done.\r\n \r\nEvent(s) detected.\r\n\r\nINFO: events detected and we have Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nevent RemovalACh is evaluating at 20.0998\r\nevent RemovalACh is assigning at 20.0998 (delay=0.0)\r\nexecuting RemovalACh\r\nCVODE time for 50001 points: 3.135878086090088\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", "outputs": [ { "dataSets": [ @@ -1624,7 +1624,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.408972, + "duration": 14.200617, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -1682,7 +1682,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.535191, + "duration": 6.493102, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -1695,7 +1695,7 @@ "tasks": [ { "algorithm": "KISAO_0000019", - "duration": 0.35353, + "duration": 3.286069, "exception": null, "id": "task1", "output": "", @@ -1733,11 +1733,11 @@ }, "rbapy": { "response": 201, - "view": "https://api.biosimulations.org/runs/6759988f9fa297efdca4cfc3", - "download": "https://api.biosimulations.org/results/6759988f9fa297efdca4cfc3/download", - "logs": "https://api.biosimulations.org/logs/6759988f9fa297efdca4cfc3?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864ba6ba5a3f02b9f2f11f", + "download": "https://api.biosimulations.org/results/67864ba6ba5a3f02b9f2f11f/download", + "logs": "https://api.biosimulations.org/logs/67864ba6ba5a3f02b9f2f11f?includeOutput=true", "log_yml": { - "duration": 0.210301, + "duration": 0.180942, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000001_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -1750,11 +1750,11 @@ }, "smoldyn": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599892707aa641046209f2", - "download": "https://api.biosimulations.org/results/67599892707aa641046209f2/download", - "logs": "https://api.biosimulations.org/logs/67599892707aa641046209f2?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864ba81f52f47f628b56d0", + "download": "https://api.biosimulations.org/results/67864ba81f52f47f628b56d0/download", + "logs": "https://api.biosimulations.org/logs/67864ba81f52f47f628b56d0?includeOutput=true", "log_yml": { - "duration": 0.055518, + "duration": 0.049693, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -1767,16 +1767,16 @@ }, "tellurium": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599894707aa64104620a2b", - "download": "https://api.biosimulations.org/results/67599894707aa64104620a2b/download", - "logs": "https://api.biosimulations.org/logs/67599894707aa64104620a2b?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864baaba5a3f02b9f2f12a", + "download": "https://api.biosimulations.org/results/67864baaba5a3f02b9f2f12a/download", + "logs": "https://api.biosimulations.org/logs/67864baaba5a3f02b9f2f12a?includeOutput=true", "log_yml": { - "duration": 2.042794, + "duration": 23.230706, "exception": null, "output": "", "sedDocuments": [ { - "duration": 1.51381, + "duration": 22.791319, "exception": null, "location": "BIOMD0000000001_url.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000001_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 66 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 12 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000001_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", @@ -2048,7 +2048,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.449744, + "duration": 14.83119, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -2106,7 +2106,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.589555, + "duration": 7.100055, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -2119,7 +2119,7 @@ "tasks": [ { "algorithm": "KISAO_0000019", - "duration": 0.291824, + "duration": 0.686363, "exception": null, "id": "task1", "output": "", @@ -2193,11 +2193,11 @@ }, "vcell": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599897707aa64104620aaf", - "download": "https://api.biosimulations.org/results/67599897707aa64104620aaf/download", - "logs": "https://api.biosimulations.org/logs/67599897707aa64104620aaf?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864bad167dc18b5b24766a", + "download": "https://api.biosimulations.org/results/67864bad167dc18b5b24766a/download", + "logs": "https://api.biosimulations.org/logs/67864bad167dc18b5b24766a?includeOutput=true", "log_yml": { - "duration": 13, + "duration": 26, "exception": null, "output": "Processing BIOMD0000000001_url.sedml. Done", "sedDocuments": [ @@ -2545,7 +2545,7 @@ "tasks": [ { "algorithm": "KISAO_0000019", - "duration": 1, + "duration": 3, "exception": null, "id": "task1", "output": "Initializing simulation job 0 ... done. Starting simulation... done.", @@ -2562,11 +2562,11 @@ }, "xpp": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599899c3054f763d58561d", - "download": "https://api.biosimulations.org/results/67599899c3054f763d58561d/download", - "logs": "https://api.biosimulations.org/logs/67599899c3054f763d58561d?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864baf1f52f47f628b56f5", + "download": "https://api.biosimulations.org/results/67864baf1f52f47f628b56f5/download", + "logs": "https://api.biosimulations.org/logs/67864baf1f52f47f628b56f5?includeOutput=true", "log_yml": { - "duration": 0.064341, + "duration": 0.064079, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" diff --git a/BioModels/BIOMD0000000138/BIOMD0000000138_url.omex b/BioModels/BIOMD0000000138/BIOMD0000000138_url.omex new file mode 100644 index 0000000000000000000000000000000000000000..25cf62dacdd95c9540857d77364e33d1b4bd93c5 GIT binary patch literal 5637 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d97352a5..6efa284c 100644 --- a/BioModels/BIOMD0000000138/tests/results_compatibility_biosimulators.md +++ b/BioModels/BIOMD0000000138/tests/results_BIOMD0000000138_url.md @@ -1,23 +1,23 @@ | Engine | Compatibility | pass / FAIL (R) | pass / FAIL (L) | d1 (R) | d1 (L) | |:-------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:------------------------------------------------------------------------|:-----------------------------------------------------------------------| -|
    AMICIhttps://docs.biosimulators.org/Biosimulators_AMICI/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with AMICI.

    SBML and SED-ML are compatible with AMICI.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    lambda * (phik - n) / taun

    ERROR TYPE:
    CombineArchiveExecutionError
    |
    ❌ FAILERROR MESSAGE:
    lambda * (phik - n) / taun

    ERROR TYPE:
    CombineArchiveExecutionError
    | plot | plot | -|
    BioNetGenhttps://docs.biosimulators.org/Biosimulators_BioNetGen/
    |
    ⚠ XFAILEXPECTED FAIL

    Only BNGL, SED-ML are compatible with BioNetGen.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    BoolNethttps://docs.biosimulators.org/Biosimulators_BoolNet/
    |
    ⚠ XFAILEXPECTED FAIL

    Only SBML-qual, SED-ML are compatible with BoolNet.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    Brian 2https://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with Brian 2.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    CBMPyhttps://docs.biosimulators.org/Biosimulators_CBMPy/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with CBMPy.

    SBML and SED-ML are compatible with CBMPy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    COBRApyhttps://docs.biosimulators.org/Biosimulators_COBRApy/
    Only allows steady state simulations
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COBRApy.

    SBML and SED-ML are compatible with COBRApy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    COPASIhttps://docs.biosimulators.org/Biosimulators_COPASI/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COPASI.

    SBML and SED-ML are compatible with COPASI.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | -|
    GillesPy2https://docs.biosimulators.org/Biosimulators_GillesPy2/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with GillesPy2.

    SBML and SED-ML are compatible with GillesPy2.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    GINsimhttps://docs.biosimulators.org/Biosimulators_GINsim/
    |
    ⚠ XFAILEXPECTED FAIL

    Only SBML-qual, SED-ML are compatible with GINsim.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    LibSBMLSimhttps://docs.biosimulators.org/Biosimulators_LibSBMLSim/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with LibSBMLSim.

    SBML and SED-ML are compatible with LibSBMLSim.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    MASSpyhttps://docs.biosimulators.org/Biosimulators_MASSpy/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with MASSpy.

    SBML and SED-ML are compatible with MASSpy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    Something went wrong reading the SBML model. Most likely the SBML model is not valid. Please check that your model is valid using the `mass.io.sbml.validate_sbml_model` function or via the online validator at http://sbml.org/validator .
    `(model, errors) = validate_sbml_model(filename)`
    If the model is valid and cannot be read please open an issue at https://github.com/SBRG/masspy/issues .

    ERROR TYPE:
    CombineArchiveExecutionError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | plot | | -|
    NetPyNEhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with NetPyNE.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    NEURONhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with NEURON.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    OpenCORhttps://docs.biosimulators.org/Biosimulators_OpenCOR/
    |
    ⚠ XFAILEXPECTED FAIL

    Only CellML, SED-ML are compatible with OpenCOR.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    pyNeuroMLhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with pyNeuroML.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    PySCeShttps://docs.biosimulators.org/Biosimulators_PySCeS/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with PySCeS.

    SBML and SED-ML are compatible with PySCeS.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    class 'AttributeError':'PysMod' object has no attribute 'lambda'

    ERROR TYPE:
    CombineArchiveExecutionError
    |
    ❌ FAILERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    class 'AttributeError':'PysMod' object has no attribute 'lambda'

    ERROR TYPE:
    CombineArchiveExecutionError
    | plot | plot | -|
    RBApyhttps://docs.biosimulators.org/Biosimulators_RBApy/
    |
    ⚠ XFAILEXPECTED FAIL

    Only RBApy, SED-ML are compatible with RBApy.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    Smoldynhttps://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api
    |
    ⚠ XFAILEXPECTED FAIL

    Only Smoldyn, SED-ML are compatible with Smoldyn.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    Error unknown. The log.yml containing error information was not found.

    | | | -|
    Telluriumhttps://docs.biosimulators.org/Biosimulators_tellurium/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with Tellurium.

    SBML and SED-ML are compatible with Tellurium.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | -|
    VCellhttps://github.com/virtualcell/vcell
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with VCell.

    SBML, SED-ML and BNGL are compatible with VCell.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | -|
    XPPhttps://docs.biosimulators.org/Biosimulators_XPP/
    |
    ⚠ XFAILEXPECTED FAIL

    Only XPP, SED-ML are compatible with XPP.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | \ No newline at end of file +|
    AMICIhttps://docs.biosimulators.org/Biosimulators_AMICI/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with AMICI.

    SBML and SED-ML are compatible with AMICI.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    lambda * (phik - n) / taun

    ERROR TYPE:
    CombineArchiveExecutionError
    |
    ❌ FAILERROR MESSAGE:
    lambda * (phik - n) / taun

    ERROR TYPE:
    CombineArchiveExecutionError
    | plot | plot | +|
    BioNetGenhttps://docs.biosimulators.org/Biosimulators_BioNetGen/
    |
    ⚠ XFAILEXPECTED FAIL

    Only BNGL, SED-ML are compatible with BioNetGen.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    BoolNethttps://docs.biosimulators.org/Biosimulators_BoolNet/
    |
    ⚠ XFAILEXPECTED FAIL

    Only SBML-qual, SED-ML are compatible with BoolNet.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    Brian 2https://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with Brian 2.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    CBMPyhttps://docs.biosimulators.org/Biosimulators_CBMPy/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with CBMPy.

    SBML and SED-ML are compatible with CBMPy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    COBRApyhttps://docs.biosimulators.org/Biosimulators_COBRApy/
    Only allows steady state simulations
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COBRApy.

    SBML and SED-ML are compatible with COBRApy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    COPASIhttps://docs.biosimulators.org/Biosimulators_COPASI/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COPASI.

    SBML and SED-ML are compatible with COPASI.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | +|
    GillesPy2https://docs.biosimulators.org/Biosimulators_GillesPy2/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with GillesPy2.

    SBML and SED-ML are compatible with GillesPy2.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    GINsimhttps://docs.biosimulators.org/Biosimulators_GINsim/
    |
    ⚠ XFAILEXPECTED FAIL

    Only SBML-qual, SED-ML are compatible with GINsim.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    LibSBMLSimhttps://docs.biosimulators.org/Biosimulators_LibSBMLSim/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with LibSBMLSim.

    SBML and SED-ML are compatible with LibSBMLSim.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    MASSpyhttps://docs.biosimulators.org/Biosimulators_MASSpy/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with MASSpy.

    SBML and SED-ML are compatible with MASSpy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    Something went wrong reading the SBML model. Most likely the SBML model is not valid. Please check that your model is valid using the `mass.io.sbml.validate_sbml_model` function or via the online validator at http://sbml.org/validator .
    `(model, errors) = validate_sbml_model(filename)`
    If the model is valid and cannot be read please open an issue at https://github.com/SBRG/masspy/issues .

    ERROR TYPE:
    CombineArchiveExecutionError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | plot | | +|
    NetPyNEhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with NetPyNE.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    NEURONhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with NEURON.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    OpenCORhttps://docs.biosimulators.org/Biosimulators_OpenCOR/
    |
    ⚠ XFAILEXPECTED FAIL

    Only CellML, SED-ML are compatible with OpenCOR.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    pyNeuroMLhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with pyNeuroML.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    PySCeShttps://docs.biosimulators.org/Biosimulators_PySCeS/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with PySCeS.

    SBML and SED-ML are compatible with PySCeS.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    class 'AttributeError':'PysMod' object has no attribute 'lambda'

    ERROR TYPE:
    CombineArchiveExecutionError
    |
    ❌ FAILERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    class 'AttributeError':'PysMod' object has no attribute 'lambda'

    ERROR TYPE:
    CombineArchiveExecutionError
    | plot | plot | +|
    RBApyhttps://docs.biosimulators.org/Biosimulators_RBApy/
    |
    ⚠ XFAILEXPECTED FAIL

    Only RBApy, SED-ML are compatible with RBApy.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.
    - Simulation `auto_ten_seconds` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    Smoldynhttps://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api
    |
    ⚠ XFAILEXPECTED FAIL

    Only Smoldyn, SED-ML are compatible with Smoldyn.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    Error unknown. The log.yml containing error information was not found.

    | | | +|
    Telluriumhttps://docs.biosimulators.org/Biosimulators_tellurium/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with Tellurium.

    SBML and SED-ML are compatible with Tellurium.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | +|
    VCellhttps://github.com/virtualcell/vcell
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with VCell.

    BNGL, SBML and SED-ML are compatible with VCell.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | +|
    XPPhttps://docs.biosimulators.org/Biosimulators_XPP/
    |
    ⚠ XFAILEXPECTED FAIL

    Only XPP, SED-ML are compatible with XPP.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | \ No newline at end of file diff --git a/BioModels/BIOMD0000000138/tests/results_local.json b/BioModels/BIOMD0000000138/tests/results_local.json index b139b252..512b0105 100644 --- a/BioModels/BIOMD0000000138/tests/results_local.json +++ b/BioModels/BIOMD0000000138/tests/results_local.json @@ -2,7 +2,7 @@ "amici": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/amici' returned non-zero exit status 1", "log_yml": { - "duration": 1.032238, + "duration": 1.877625, "exception": { "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n rateRule \"lambda * (phik - n) / taun\" contains an unsupported expression: Sympify of expression 'could not parse 'lambda * (phik - n) / taun'' failed, because of exception being raised:\n TokenError: Starred arguments in lambda not supported.", "type": "CombineArchiveExecutionError" @@ -10,7 +10,7 @@ "output": "", "sedDocuments": [ { - "duration": 0.617973, + "duration": 1.214399, "exception": { "message": "The SED document did not execute successfully:\n\n rateRule \"lambda * (phik - n) / taun\" contains an unsupported expression: Sympify of expression 'could not parse 'lambda * (phik - n) / taun'' failed, because of exception being raised:\n TokenError: Starred arguments in lambda not supported.", "type": "SedmlExecutionError" @@ -197,7 +197,7 @@ "status": "SKIPPED" } ], - "duration": 0.070374, + "duration": 0.069103, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -211,7 +211,7 @@ "status": "SKIPPED" } ], - "duration": 0.303367, + "duration": 0.667161, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -224,7 +224,7 @@ "tasks": [ { "algorithm": null, - "duration": 0.103595, + "duration": 0.259598, "exception": { "message": "rateRule \"lambda * (phik - n) / taun\" contains an unsupported expression: Sympify of expression 'could not parse 'lambda * (phik - n) / taun'' failed, because of exception being raised:\nTokenError: Starred arguments in lambda not supported.", "type": "SBMLException" @@ -246,12 +246,12 @@ "brian2": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/brian2' returned non-zero exit status 1", "log_yml": { - "duration": 0.057646, + "duration": 0.054593, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "WARNING /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmprl_sq5nd/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n [py.warnings]\r\npyNeuroML >>> WARNING - /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmprl_sq5nd/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n\r\n", + "output": "WARNING /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp_qqxt423/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n [py.warnings]\r\npyNeuroML >>> WARNING - /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp_qqxt423/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -261,12 +261,12 @@ "bionetgen": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/bionetgen' returned non-zero exit status 1", "log_yml": { - "duration": 0.321758, + "duration": 0.180273, "exception": { "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmppw3rmx7z/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpzovze2fr/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -276,12 +276,12 @@ "boolnet": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/boolnet' returned non-zero exit status 1", "log_yml": { - "duration": 0.13801, + "duration": 0.175026, "exception": { "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpizrdsji4/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` may be invalid.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpdtrisbpe/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` may be invalid.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -291,12 +291,12 @@ "cbmpy": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/cbmpy' returned non-zero exit status 1", "log_yml": { - "duration": 0.272314, + "duration": 0.260162, "exception": { "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "\r\nINFO: No xlwt module available, Excel spreadsheet creation disabled\r\n\r\n\r\n\r\nNo module named 'cplex'\r\n\r\n\r\n\r\nCPLEX not available\r\n\r\n*****\r\nUsing GLPK\r\n*****\r\n\r\n\r\nINFO: No xlrd module available, Excel spreadsheet reading disabled\r\n\r\nCBMPy environment\r\n******************\r\nRevision: r689\r\n\r\n\r\n***********************************************************************\r\n* Welcome to CBMPy (0.7.25) - PySCeS Constraint Based Modelling *\r\n* http://cbmpy.sourceforge.net *\r\n* Copyright(C) Brett G. Olivier 2014 - 2019 *\r\n* Dept. of Systems Bioinformatics *\r\n* Vrije Universiteit Amsterdam, Amsterdam, The Netherlands *\r\n* CBMPy is developed as part of the BeBasic MetaToolKit Project *\r\n* Distributed under the GNU GPL v 3.0 licence, see *\r\n* LICENCE (supplied with this release) for details *\r\n***********************************************************************\r\n\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp9_kx444p/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "\r\nINFO: No xlwt module available, Excel spreadsheet creation disabled\r\n\r\n\r\n\r\nNo module named 'cplex'\r\n\r\n\r\n\r\nCPLEX not available\r\n\r\n*****\r\nUsing GLPK\r\n*****\r\n\r\n\r\nINFO: No xlrd module available, Excel spreadsheet reading disabled\r\n\r\nCBMPy environment\r\n******************\r\nRevision: r689\r\n\r\n\r\n***********************************************************************\r\n* Welcome to CBMPy (0.7.25) - PySCeS Constraint Based Modelling *\r\n* http://cbmpy.sourceforge.net *\r\n* Copyright(C) Brett G. Olivier 2014 - 2019 *\r\n* Dept. of Systems Bioinformatics *\r\n* Vrije Universiteit Amsterdam, Amsterdam, The Netherlands *\r\n* CBMPy is developed as part of the BeBasic MetaToolKit Project *\r\n* Distributed under the GNU GPL v 3.0 licence, see *\r\n* LICENCE (supplied with this release) for details *\r\n***********************************************************************\r\n\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpyx38qr_w/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -306,12 +306,12 @@ "cobrapy": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/cobrapy' returned non-zero exit status 1", "log_yml": { - "duration": 0.130785, + "duration": 0.187222, "exception": { "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpsdnf6zwy/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp1m_9xnbn/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -321,12 +321,12 @@ "copasi": { "exception_message": "", "log_yml": { - "duration": 1.23765, + "duration": 8.287122, "exception": null, - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpp12xqjof/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpp12xqjof/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp3zkn7lhy/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp3zkn7lhy/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [ { - "duration": 0.988234, + "duration": 7.88391, "exception": null, "location": "BIOMD0000000138_url.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000138_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 44 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000138_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", @@ -510,7 +510,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.188624, + "duration": 5.513608, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -524,7 +524,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.404789, + "duration": 0.937858, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -537,10 +537,10 @@ "tasks": [ { "algorithm": "KISAO_0000560", - "duration": 0.105681, + "duration": 1.226304, "exception": null, "id": "task1", - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task1_gcal__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_taun__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_isk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phia__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ks__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ga__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_tauh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phif__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phih__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ik__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phical__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_Cm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_alpha__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_cinf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vca__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ff__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_va__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_c__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_n__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_h__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gsk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_reaction_0000004__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phik__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ica__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ia__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_V__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ibk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_lambda__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ikdr__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `BIOMD0000000138_url` may be invalid.\r\n - The model file `/tmp/tmpp12xqjof/./BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'LSODA/LSODAR hybrid method' (KISAO_0000560) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task1_alpha__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_reaction_0000004__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ibk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_cinf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ica__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_tauh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ff__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ks__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ikdr__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_h__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_isk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ia__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_c__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_lambda__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phif__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_V__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vca__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ga__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_va__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gsk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_n__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gcal__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phih__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ik__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phia__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_Cm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_taun__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phical__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phik__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `BIOMD0000000138_url` may be invalid.\r\n - The model file `/tmp/tmp3zkn7lhy/./BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'LSODA/LSODAR hybrid method' (KISAO_0000560) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n", "simulatorDetails": [ { "key": "methodName", @@ -565,12 +565,12 @@ "gillespy2": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/gillespy2' returned non-zero exit status 1", "log_yml": { - "duration": 0.129637, + "duration": 0.150747, "exception": { "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmphr0xa1gw/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpbzytny2r/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -580,12 +580,12 @@ "ginsim": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/ginsim' returned non-zero exit status 1", "log_yml": { - "duration": 0.125017, + "duration": 0.145654, "exception": { "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp8wbu9mpc/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` may be invalid.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmplhecdld9/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` may be invalid.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -595,12 +595,12 @@ "libsbmlsim": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/libsbmlsim' returned non-zero exit status 1", "log_yml": { - "duration": 0.144621, + "duration": 0.13722, "exception": { "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpyuc4v55q/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` may be invalid.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpmonjtjvh/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` may be invalid.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -610,12 +610,12 @@ "masspy": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/masspy' returned non-zero exit status 1", "log_yml": { - "duration": 0.132452, + "duration": 0.206677, "exception": { "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mSedmlFeatureNotSupportedWarning\u001b[0m: \u001b[33m`/tmp/tmpp4dcqrwr/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mSedmlFeatureNotSupportedWarning\u001b[0m: \u001b[33m`/tmp/tmpxq54t0_0/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -625,7 +625,7 @@ "netpyne": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/netpyne' returned non-zero exit status 1", "log_yml": { - "duration": 0.055506, + "duration": 0.061523, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -640,12 +640,12 @@ "neuron": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/neuron' returned non-zero exit status 1", "log_yml": { - "duration": 0.0361, + "duration": 0.058044, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmplsil1iqz/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp7x9dcprt/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -655,12 +655,12 @@ "opencor": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/opencor' returned non-zero exit status 1", "log_yml": { - "duration": 0.065856, + "duration": 0.088319, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmprzokvr4x/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", + "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp5aagj4fj/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -670,12 +670,12 @@ "pyneuroml": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/pyneuroml' returned non-zero exit status 1", "log_yml": { - "duration": 0.045912, + "duration": 0.065812, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmppflsl260/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp9y8nif7a/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -685,21 +685,21 @@ "pysces": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/pysces' returned non-zero exit status 1", "log_yml": { - "duration": 1.907434, + "duration": 3.14559, "exception": { "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n :'PysMod' object has no attribute 'lambda'", "type": "CombineArchiveExecutionError" }, - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpiw9r8oqq/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpiw9r8oqq/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpwfpytsc6/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpwfpytsc6/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [ { - "duration": 1.631441, + "duration": 2.845247, "exception": { "message": "The SED document did not execute successfully:\n\n :'PysMod' object has no attribute 'lambda'", "type": "SedmlExecutionError" }, "location": "BIOMD0000000138_url.sedml", - "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000138_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 44 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000138_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V1\r\nlambda is a reserved symbol, replacing with Lambda\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmpf736fa2e.xml\r\n*******************************************************************\r\n\r\nReserved symbol lambda replaced with Lambda \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"reaction_0000004\" in default compartment\r\nWriting file: /tmp/tmpsdz9cbtq.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpf736fa2e.xml\r\nout: /tmp/tmpsdz9cbtq.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmpsdz9cbtq.psc loading ..... \r\nParsing file: /tmp/tmpsdz9cbtq.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"vca\" has been initialised but does not occur in a rate equation\r\nInfo: \"vk\" has been initialised but does not occur in a rate equation\r\nInfo: \"Cm\" has been initialised but does not occur in a rate equation\r\nInfo: \"gk\" has been initialised but does not occur in a rate equation\r\nInfo: \"gcal\" has been initialised but does not occur in a rate equation\r\nInfo: \"gsk\" has been initialised but does not occur in a rate equation\r\nInfo: \"ga\" has been initialised but does not occur in a rate equation\r\nInfo: \"gf\" has been initialised but does not occur in a rate equation\r\nInfo: \"vn\" has been initialised but does not occur in a rate equation\r\nInfo: \"va\" has been initialised but does not occur in a rate equation\r\nInfo: \"vm\" has been initialised but does not occur in a rate equation\r\nInfo: \"vh\" has been initialised but does not occur in a rate equation\r\nInfo: \"vf\" has been initialised but does not occur in a rate equation\r\nInfo: \"sn\" has been initialised but does not occur in a rate equation\r\nInfo: \"sa\" has been initialised but does not occur in a rate equation\r\nInfo: \"sm\" has been initialised but does not occur in a rate equation\r\nInfo: \"sh\" has been initialised but does not occur in a rate equation\r\nInfo: \"sf\" has been initialised but does not occur in a rate equation\r\nInfo: \"taun\" has been initialised but does not occur in a rate equation\r\nInfo: \"tauh\" has been initialised but does not occur in a rate equation\r\nInfo: \"Lambda\" has been initialised but does not occur in a rate equation\r\nInfo: \"ks\" has been initialised but does not occur in a rate equation\r\nInfo: \"phik\" has been initialised but does not occur in a rate equation\r\nInfo: \"phia\" has been initialised but does not occur in a rate equation\r\nInfo: \"phih\" has been initialised but does not occur in a rate equation\r\nInfo: \"phif\" has been initialised but does not occur in a rate equation\r\nInfo: \"phical\" has been initialised but does not occur in a rate equation\r\nInfo: \"cinf\" has been initialised but does not occur in a rate equation\r\nInfo: \"isk\" has been initialised but does not occur in a rate equation\r\nInfo: \"ibk\" has been initialised but does not occur in a rate equation\r\nInfo: \"ikdr\" has been initialised but does not occur in a rate equation\r\nInfo: \"ia\" has been initialised but does not occur in a rate equation\r\nInfo: \"ik\" has been initialised but does not occur in a rate equation\r\nInfo: \"n\" has been initialised but does not occur in a rate equation\r\nInfo: \"h\" has been initialised but does not occur in a rate equation\r\nInfo: \"V\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . done.\r\nCalculating K matrix . . . . . . . no flux conservation\r\n done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nRate rule(s) detected.\r\nINFO: RateRules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 1001 points: 0.022429227828979492\r\nRateRules evaluated and added to mod.data_sim.\r\n \u001b[31mfailed - 'PysMod' object has no attribute 'lambda'\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[36mqueued\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000138_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 44 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000138_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V1\r\nlambda is a reserved symbol, replacing with Lambda\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmpsfp1l9p9.xml\r\n*******************************************************************\r\n\r\nReserved symbol lambda replaced with Lambda \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"reaction_0000004\" in default compartment\r\nWriting file: /tmp/tmp2wn2wxb2.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpsfp1l9p9.xml\r\nout: /tmp/tmp2wn2wxb2.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmp2wn2wxb2.psc loading ..... \r\nParsing file: /tmp/tmp2wn2wxb2.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"vca\" has been initialised but does not occur in a rate equation\r\nInfo: \"vk\" has been initialised but does not occur in a rate equation\r\nInfo: \"Cm\" has been initialised but does not occur in a rate equation\r\nInfo: \"gk\" has been initialised but does not occur in a rate equation\r\nInfo: \"gcal\" has been initialised but does not occur in a rate equation\r\nInfo: \"gsk\" has been initialised but does not occur in a rate equation\r\nInfo: \"ga\" has been initialised but does not occur in a rate equation\r\nInfo: \"gf\" has been initialised but does not occur in a rate equation\r\nInfo: \"vn\" has been initialised but does not occur in a rate equation\r\nInfo: \"va\" has been initialised but does not occur in a rate equation\r\nInfo: \"vm\" has been initialised but does not occur in a rate equation\r\nInfo: \"vh\" has been initialised but does not occur in a rate equation\r\nInfo: \"vf\" has been initialised but does not occur in a rate equation\r\nInfo: \"sn\" has been initialised but does not occur in a rate equation\r\nInfo: \"sa\" has been initialised but does not occur in a rate equation\r\nInfo: \"sm\" has been initialised but does not occur in a rate equation\r\nInfo: \"sh\" has been initialised but does not occur in a rate equation\r\nInfo: \"sf\" has been initialised but does not occur in a rate equation\r\nInfo: \"taun\" has been initialised but does not occur in a rate equation\r\nInfo: \"tauh\" has been initialised but does not occur in a rate equation\r\nInfo: \"Lambda\" has been initialised but does not occur in a rate equation\r\nInfo: \"ks\" has been initialised but does not occur in a rate equation\r\nInfo: \"phik\" has been initialised but does not occur in a rate equation\r\nInfo: \"phia\" has been initialised but does not occur in a rate equation\r\nInfo: \"phih\" has been initialised but does not occur in a rate equation\r\nInfo: \"phif\" has been initialised but does not occur in a rate equation\r\nInfo: \"phical\" has been initialised but does not occur in a rate equation\r\nInfo: \"cinf\" has been initialised but does not occur in a rate equation\r\nInfo: \"isk\" has been initialised but does not occur in a rate equation\r\nInfo: \"ibk\" has been initialised but does not occur in a rate equation\r\nInfo: \"ikdr\" has been initialised but does not occur in a rate equation\r\nInfo: \"ia\" has been initialised but does not occur in a rate equation\r\nInfo: \"ik\" has been initialised but does not occur in a rate equation\r\nInfo: \"n\" has been initialised but does not occur in a rate equation\r\nInfo: \"h\" has been initialised but does not occur in a rate equation\r\nInfo: \"V\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . done.\r\nCalculating K matrix . . . . . . . no flux conservation\r\n done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nRate rule(s) detected.\r\nINFO: RateRules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 30001 points: 1.0987403392791748\r\nRateRules evaluated and added to mod.data_sim.\r\n \u001b[31mfailed - 'PysMod' object has no attribute 'lambda'\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[36mqueued\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", "outputs": [ { "dataSets": [ @@ -880,7 +880,7 @@ "status": "SKIPPED" } ], - "duration": 0.058461, + "duration": 0.042524, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -894,7 +894,7 @@ "status": "SKIPPED" } ], - "duration": 0.316446, + "duration": 0.33085, "exception": null, "id": "autogen_plot_for_task1", "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the X axis because the X data generators have inconsistent names.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mCurves have inconsistent x axis scales. All curves will be plotted in linear scale.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mCurves have inconsistent y axis scales. All curves will be plotted in linear scale.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", @@ -907,13 +907,13 @@ "tasks": [ { "algorithm": null, - "duration": 1.121393, + "duration": 2.282584, "exception": { "message": "'PysMod' object has no attribute 'lambda'", "type": "AttributeError" }, "id": "task1", - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task1_ga__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_V__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_taun__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_reaction_0000004__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phia__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ibk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_tauh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phif__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_isk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ikdr__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_lambda__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ks__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gsk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ff__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vca__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_alpha__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ia__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_c__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_Cm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gcal__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phical__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_va__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phik__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_cinf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_n__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_h__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phih__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ik__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ica__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task1_phia__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_alpha__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_tauh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phif__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gcal__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ica__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gsk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ikdr__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phical__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_Cm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ga__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ia__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_c__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_lambda__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vca__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_va__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_cinf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_h__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ff__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phih__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ibk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_n__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ks__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phik__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_isk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ik__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_taun__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_reaction_0000004__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_V__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n", "simulatorDetails": null, "skipReason": null, "status": "FAILED" @@ -929,12 +929,12 @@ "rbapy": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/rbapy' returned non-zero exit status 1", "log_yml": { - "duration": 0.118782, + "duration": 0.186552, "exception": { "message": "`/root/in/BIOMD0000000138_url.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpu5yiuvh2/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` may be invalid.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpbmc8r66v/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` may be invalid.\r\n - Model `BIOMD0000000138_url` may be invalid.\r\n - The model file `BIOMD0000000138_url.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((va - V) / sa))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((V - vh) / sh))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vf - V) / sf))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vm - V) / sm))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gcal * phical * (V - vca)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pow(c, 2) / (pow(c, 2) + pow(ks, 2))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gsk * cinf * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gf * phif * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'gk * n * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ga * phia * h * (V - vk)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'isk + ibk + ikdr + ia' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-(ica + ik) / Cm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'lambda * (phik - n) / taun' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '(phih - h) / tauh' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '-ff * (alpha * ica + kc * c) * cell' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Cm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gcal' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gsk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ga' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'gf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'va' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sa' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sm' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'sf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'taun' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'tauh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'lambda' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'kc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ks' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ff' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'alpha' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phih' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phif' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'phical' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'cinf' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ica' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'isk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ibk' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ikdr' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ia' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ik' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'n' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'h' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'V' does not have a 'units' attribute.\r\n \u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -949,12 +949,12 @@ "tellurium": { "exception_message": "", "log_yml": { - "duration": 1.155725, + "duration": 7.21062, "exception": null, - "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmpx3c_bii7/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmpx3c_bii7/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n", + "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmpbbz2x1wg/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` has warnings.\r\n - Model `BIOMD0000000138_url` has warnings.\r\n - The model file `BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmpbbz2x1wg/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n", "sedDocuments": [ { - "duration": 0.774385, + "duration": 6.732142, "exception": null, "location": "BIOMD0000000138_url.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000138_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 44 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000138_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", @@ -1138,7 +1138,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.194506, + "duration": 5.227241, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -1152,7 +1152,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.299407, + "duration": 1.015425, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -1165,10 +1165,10 @@ "tasks": [ { "algorithm": "KISAO_0000019", - "duration": 0.116665, + "duration": 0.298645, "exception": null, "id": "task1", - "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33m- Variable `auto_dg_for_task1_h__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_lambda__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_va__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_isk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ga__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ks__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ia__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_taun__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_tauh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gcal__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_reaction_0000004__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ikdr__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ibk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phical__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_Cm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phif__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gsk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ik__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phia__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ica__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phih__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_alpha__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phik__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vca__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_cinf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_V__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_c__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_n__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ff__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vf__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mModel `BIOMD0000000138_url` may be invalid.\r\n - The model file `/tmp/tmpx3c_bii7/./BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning:\r\n\r\n\u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n\r\n", + "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33m- Variable `auto_dg_for_task1_gk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_isk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_reaction_0000004__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_cinf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phia__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ia__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_n__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_Cm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ik__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ga__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_alpha__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vca__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_kc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_tauh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sf__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phik__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ica__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_h__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gsk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ibk__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_sm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_lambda__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_gcal__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phical__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_V__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_c__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_vm__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ikdr__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phif__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ks__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_va__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_taun__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_ff__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task1_phih__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mModel `BIOMD0000000138_url` may be invalid.\r\n - The model file `/tmp/tmpbbz2x1wg/./BIOMD0000000138_url.xml` has warnings.\r\n - 16 warnings of type SBML unit consistency (99505). The following is the first warning at line 182, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1 / (1 + exp((vn - V) / sn))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 40 warnings of type Modeling practice (80701). The following is the first warning at line 134, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'vca' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning:\r\n\r\n\u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n\r\n", "simulatorDetails": [ { "key": "method", @@ -1241,7 +1241,7 @@ "vcell": { "exception_message": "", "log_yml": { - "duration": 10, + "duration": 22, "exception": null, "output": "Processing BIOMD0000000138_url.sedml. Done", "sedDocuments": [ @@ -1457,7 +1457,7 @@ "tasks": [ { "algorithm": "KISAO_0000019", - "duration": 1, + "duration": 7, "exception": null, "id": "task1", "output": "Initializing simulation job 0 ... done. Starting simulation... done.", @@ -1476,12 +1476,12 @@ "xpp": { "exception_message": "Command '-i '/root/in/BIOMD0000000138_url.omex' -o /root/out' in image 'ghcr.io/biosimulators/xpp' returned non-zero exit status 1", "log_yml": { - "duration": 0.043295, + "duration": 0.059712, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpvcx37jkg/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmphs3ysasz/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" diff --git a/BioModels/BIOMD0000000138/tests/results_remote.json b/BioModels/BIOMD0000000138/tests/results_remote.json index 81e88681..2ed68328 100644 --- a/BioModels/BIOMD0000000138/tests/results_remote.json +++ b/BioModels/BIOMD0000000138/tests/results_remote.json @@ -1,11 +1,11 @@ { "amici": { "response": 201, - "view": "https://api.biosimulations.org/runs/675999409fa297efdca4d2a4", - "download": "https://api.biosimulations.org/results/675999409fa297efdca4d2a4/download", - "logs": "https://api.biosimulations.org/logs/675999409fa297efdca4d2a4?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864df3167dc18b5b2476fe", + "download": "https://api.biosimulations.org/results/67864df3167dc18b5b2476fe/download", + "logs": "https://api.biosimulations.org/logs/67864df3167dc18b5b2476fe?includeOutput=true", "log_yml": { - "duration": 0.971204, + "duration": 0.928141, "exception": { "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n rateRule \"lambda * (phik - n) / taun\" contains an unsupported expression: Sympify of expression 'could not parse 'lambda * (phik - n) / taun'' failed, because of exception being raised:\n TokenError: Starred arguments in lambda not supported.", "type": "CombineArchiveExecutionError" @@ -13,7 +13,7 @@ "output": "", "sedDocuments": [ { - "duration": 0.582419, + "duration": 0.550258, "exception": { "message": "The SED document did not execute successfully:\n\n rateRule \"lambda * (phik - n) / taun\" contains an unsupported expression: Sympify of expression 'could not parse 'lambda * (phik - n) / taun'' failed, because of exception being raised:\n TokenError: Starred arguments in lambda not supported.", "type": "SedmlExecutionError" @@ -200,7 +200,7 @@ "status": "SKIPPED" } ], - "duration": 0.06155, + "duration": 0.058551, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -214,7 +214,7 @@ "status": "SKIPPED" } ], - "duration": 0.286159, + "duration": 0.28067, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -227,7 +227,7 @@ "tasks": [ { "algorithm": null, - "duration": 0.101771, + "duration": 0.095587, "exception": { "message": "rateRule \"lambda * (phik - n) / taun\" contains an unsupported expression: Sympify of expression 'could not parse 'lambda * (phik - n) / taun'' failed, because of exception being raised:\nTokenError: Starred arguments in lambda not supported.", "type": "SBMLException" @@ -247,11 +247,11 @@ }, "brian2": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599942c3054f763d585837", - "download": "https://api.biosimulations.org/results/67599942c3054f763d585837/download", - "logs": "https://api.biosimulations.org/logs/67599942c3054f763d585837?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864df5167dc18b5b247701", + "download": "https://api.biosimulations.org/results/67864df5167dc18b5b247701/download", + "logs": "https://api.biosimulations.org/logs/67864df5167dc18b5b247701?includeOutput=true", "log_yml": { - "duration": 0.051573, + "duration": 0.049079, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -264,11 +264,11 @@ }, "bionetgen": { "response": 201, - "view": "https://api.biosimulations.org/runs/675999449fa297efdca4d2a7", - "download": "https://api.biosimulations.org/results/675999449fa297efdca4d2a7/download", - "logs": "https://api.biosimulations.org/logs/675999449fa297efdca4d2a7?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864df7167dc18b5b247704", + "download": "https://api.biosimulations.org/results/67864df7167dc18b5b247704/download", + "logs": "https://api.biosimulations.org/logs/67864df7167dc18b5b247704?includeOutput=true", "log_yml": { - "duration": 0.180789, + "duration": 0.177497, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -281,11 +281,11 @@ }, "boolnet": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599946c3054f763d58583c", - "download": "https://api.biosimulations.org/results/67599946c3054f763d58583c/download", - "logs": "https://api.biosimulations.org/logs/67599946c3054f763d58583c?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864df8ba5a3f02b9f2f1e3", + "download": "https://api.biosimulations.org/results/67864df8ba5a3f02b9f2f1e3/download", + "logs": "https://api.biosimulations.org/logs/67864df8ba5a3f02b9f2f1e3?includeOutput=true", "log_yml": { - "duration": 0.189244, + "duration": 0.184346, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -298,11 +298,11 @@ }, "cbmpy": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599947707aa64104620c8f", - "download": "https://api.biosimulations.org/results/67599947707aa64104620c8f/download", - "logs": "https://api.biosimulations.org/logs/67599947707aa64104620c8f?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864dfa167dc18b5b247707", + "download": "https://api.biosimulations.org/results/67864dfa167dc18b5b247707/download", + "logs": "https://api.biosimulations.org/logs/67864dfa167dc18b5b247707?includeOutput=true", "log_yml": { - "duration": 0.288107, + "duration": 0.255117, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -315,11 +315,11 @@ }, "cobrapy": { "response": 201, - "view": "https://api.biosimulations.org/runs/675999499fa297efdca4d2ae", - "download": "https://api.biosimulations.org/results/675999499fa297efdca4d2ae/download", - "logs": "https://api.biosimulations.org/logs/675999499fa297efdca4d2ae?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864dfc167dc18b5b24770c", + "download": "https://api.biosimulations.org/results/67864dfc167dc18b5b24770c/download", + "logs": "https://api.biosimulations.org/logs/67864dfc167dc18b5b24770c?includeOutput=true", "log_yml": { - "duration": 0.206998, + "duration": 0.169123, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -332,16 +332,16 @@ }, "copasi": { "response": 201, - "view": "https://api.biosimulations.org/runs/6759994cc3054f763d58583f", - "download": "https://api.biosimulations.org/results/6759994cc3054f763d58583f/download", - "logs": "https://api.biosimulations.org/logs/6759994cc3054f763d58583f?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864dfe167dc18b5b247711", + "download": "https://api.biosimulations.org/results/67864dfe167dc18b5b247711/download", + "logs": "https://api.biosimulations.org/logs/67864dfe167dc18b5b247711?includeOutput=true", "log_yml": { - "duration": 1.402967, + "duration": 8.410892, "exception": null, "output": "", "sedDocuments": [ { - "duration": 1.078911, + "duration": 7.952209, "exception": null, "location": "BIOMD0000000138_url.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000138_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 44 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000138_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...woohoo!\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", @@ -525,7 +525,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.301759, + "duration": 5.828147, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -539,7 +539,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.44474, + "duration": 0.850224, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -552,7 +552,7 @@ "tasks": [ { "algorithm": "KISAO_0000560", - "duration": 0.193466, + "duration": 1.155574, "exception": null, "id": "task1", "output": "", @@ -578,11 +578,11 @@ }, "gillespy2": { "response": 201, - "view": "https://api.biosimulations.org/runs/6759994e9fa297efdca4d2b6", - "download": "https://api.biosimulations.org/results/6759994e9fa297efdca4d2b6/download", - "logs": "https://api.biosimulations.org/logs/6759994e9fa297efdca4d2b6?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864e00ba5a3f02b9f2f1e9", + "download": "https://api.biosimulations.org/results/67864e00ba5a3f02b9f2f1e9/download", + "logs": "https://api.biosimulations.org/logs/67864e00ba5a3f02b9f2f1e9?includeOutput=true", "log_yml": { - "duration": 0.196542, + "duration": 0.191265, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -595,11 +595,11 @@ }, "ginsim": { "response": 201, - "view": "https://api.biosimulations.org/runs/6759994fc3054f763d585849", - "download": "https://api.biosimulations.org/results/6759994fc3054f763d585849/download", - "logs": "https://api.biosimulations.org/logs/6759994fc3054f763d585849?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864e02167dc18b5b247717", + "download": "https://api.biosimulations.org/results/67864e02167dc18b5b247717/download", + "logs": "https://api.biosimulations.org/logs/67864e02167dc18b5b247717?includeOutput=true", "log_yml": { - "duration": 0.181475, + "duration": 0.161988, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -612,11 +612,11 @@ }, "libsbmlsim": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599951c3054f763d58584c", - "download": "https://api.biosimulations.org/results/67599951c3054f763d58584c/download", - "logs": "https://api.biosimulations.org/logs/67599951c3054f763d58584c?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864e04ba5a3f02b9f2f1f0", + "download": "https://api.biosimulations.org/results/67864e04ba5a3f02b9f2f1f0/download", + "logs": "https://api.biosimulations.org/logs/67864e04ba5a3f02b9f2f1f0?includeOutput=true", "log_yml": { - "duration": 0.1971, + "duration": 0.167952, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -629,11 +629,11 @@ }, "masspy": { "response": 201, - "view": "https://api.biosimulations.org/runs/675999539fa297efdca4d2c4", - "download": "https://api.biosimulations.org/results/675999539fa297efdca4d2c4/download", - "logs": "https://api.biosimulations.org/logs/675999539fa297efdca4d2c4?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864e06167dc18b5b24771d", + "download": "https://api.biosimulations.org/results/67864e06167dc18b5b24771d/download", + "logs": "https://api.biosimulations.org/logs/67864e06167dc18b5b24771d?includeOutput=true", "log_yml": { - "duration": 1.160059, + "duration": 1.127107, "exception": { "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n Something went wrong reading the SBML model. Most likely the SBML model is not valid. Please check that your model is valid using the `mass.io.sbml.validate_sbml_model` function or via the online validator at http://sbml.org/validator .\n \t`(model, errors) = validate_sbml_model(filename)`\n If the model is valid and cannot be read please open an issue at https://github.com/SBRG/masspy/issues .", "type": "CombineArchiveExecutionError" @@ -641,7 +641,7 @@ "output": "", "sedDocuments": [ { - "duration": 0.641092, + "duration": 0.690025, "exception": { "message": "The SED document did not execute successfully:\n\n Something went wrong reading the SBML model. Most likely the SBML model is not valid. Please check that your model is valid using the `mass.io.sbml.validate_sbml_model` function or via the online validator at http://sbml.org/validator .\n \t`(model, errors) = validate_sbml_model(filename)`\n If the model is valid and cannot be read please open an issue at https://github.com/SBRG/masspy/issues .", "type": "SedmlExecutionError" @@ -828,7 +828,7 @@ "status": "SKIPPED" } ], - "duration": 0.056229, + "duration": 0.179651, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -842,7 +842,7 @@ "status": "SKIPPED" } ], - "duration": 0.339426, + "duration": 0.278479, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -855,7 +855,7 @@ "tasks": [ { "algorithm": null, - "duration": 0.086716, + "duration": 0.073765, "exception": { "message": "Something went wrong reading the SBML model. Most likely the SBML model is not valid. Please check that your model is valid using the `mass.io.sbml.validate_sbml_model` function or via the online validator at http://sbml.org/validator .\n\t`(model, errors) = validate_sbml_model(filename)`\nIf the model is valid and cannot be read please open an issue at https://github.com/SBRG/masspy/issues .", "type": "MassSBMLError" @@ -875,11 +875,11 @@ }, "netpyne": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599955c3054f763d585861", - "download": "https://api.biosimulations.org/results/67599955c3054f763d585861/download", - "logs": "https://api.biosimulations.org/logs/67599955c3054f763d585861?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864e07167dc18b5b247726", + "download": "https://api.biosimulations.org/results/67864e07167dc18b5b247726/download", + "logs": "https://api.biosimulations.org/logs/67864e07167dc18b5b247726?includeOutput=true", "log_yml": { - "duration": 0.052541, + "duration": 0.051417, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -892,11 +892,11 @@ }, "neuron": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599956707aa64104620cab", - "download": "https://api.biosimulations.org/results/67599956707aa64104620cab/download", - "logs": "https://api.biosimulations.org/logs/67599956707aa64104620cab?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864e09ba5a3f02b9f2f213", + "download": "https://api.biosimulations.org/results/67864e09ba5a3f02b9f2f213/download", + "logs": "https://api.biosimulations.org/logs/67864e09ba5a3f02b9f2f213?includeOutput=true", "log_yml": { - "duration": 0.048951, + "duration": 0.047247, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -909,16 +909,16 @@ }, "opencor": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599958c3054f763d585873", - "download": "https://api.biosimulations.org/results/67599958c3054f763d585873/download", - "logs": "https://api.biosimulations.org/logs/67599958c3054f763d585873?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864e0a1f52f47f628b57b6", + "download": "https://api.biosimulations.org/results/67864e0a1f52f47f628b57b6/download", + "logs": "https://api.biosimulations.org/logs/67864e0a1f52f47f628b57b6?includeOutput=true", "log_yml": { - "duration": 0.029932, + "duration": 0.050846, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpmyqps9wi/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", + "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpiy7l0iq_/./BIOMD0000000138_url.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -926,11 +926,11 @@ }, "pyneuroml": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599959c3054f763d585886", - "download": "https://api.biosimulations.org/results/67599959c3054f763d585886/download", - "logs": "https://api.biosimulations.org/logs/67599959c3054f763d585886?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864e0c1f52f47f628b57bf", + "download": "https://api.biosimulations.org/results/67864e0c1f52f47f628b57bf/download", + "logs": "https://api.biosimulations.org/logs/67864e0c1f52f47f628b57bf?includeOutput=true", "log_yml": { - "duration": 0.048959, + "duration": 0.048989, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -943,11 +943,11 @@ }, "pysces": { "response": 201, - "view": "https://api.biosimulations.org/runs/6759995bc3054f763d58588c", - "download": "https://api.biosimulations.org/results/6759995bc3054f763d58588c/download", - "logs": "https://api.biosimulations.org/logs/6759995bc3054f763d58588c?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864e0eba5a3f02b9f2f230", + "download": "https://api.biosimulations.org/results/67864e0eba5a3f02b9f2f230/download", + "logs": "https://api.biosimulations.org/logs/67864e0eba5a3f02b9f2f230?includeOutput=true", "log_yml": { - "duration": 2.135361, + "duration": 3.560239, "exception": { "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n :'PysMod' object has no attribute 'lambda'", "type": "CombineArchiveExecutionError" @@ -955,13 +955,13 @@ "output": "libtk8.6.so: cannot open shared object file: No such file or directory\r\n\r\nPySCeS defaults to matplotlib's TKagg backend if not specified in the user configuration file, set \"matplotlib_backend = \" \r\nMatplotlib interface loaded (pysces.plt.m)\r\nPitcon routines available\r\nNLEQ2 routines available\r\nSBML support available\r\nYou are using NumPy (2.1.2) with SciPy (1.14.1)\r\nAssimulo CVode available\r\nRateChar is available\r\nParallel scanner is available\r\n\r\nPySCeS environment\r\n******************\r\npysces.model_dir = /home/FCAM/crbmapi/Pysces/psc\r\npysces.output_dir = /home/FCAM/crbmapi/Pysces\r\n\r\n\r\n***********************************************************************\r\n* Welcome to PySCeS (1.2.2) - Python Simulator for Cellular Systems *\r\n* http://pysces.sourceforge.net *\r\n* Copyright(C) B.G. Olivier, J.M. Rohwer, J.-H.S. Hofmeyr, 2004-2024 *\r\n* Triple-J Group for Molecular Cell Physiology *\r\n* Stellenbosch University, ZA and VU University Amsterdam, NL *\r\n* PySCeS is distributed under the PySCeS (BSD style) licence, see *\r\n* LICENCE.txt (supplied with this release) for details *\r\n* Please cite PySCeS with: doi:10.1093/bioinformatics/bti046 *\r\n***********************************************************************\r\n", "sedDocuments": [ { - "duration": 1.817634, + "duration": 3.268038, "exception": { "message": "The SED document did not execute successfully:\n\n :'PysMod' object has no attribute 'lambda'", "type": "SedmlExecutionError" }, "location": "BIOMD0000000138_url.sedml", - "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000138_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 44 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000138_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V1\r\nlambda is a reserved symbol, replacing with Lambda\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmphf9ek76_.xml\r\n*******************************************************************\r\n\r\nReserved symbol lambda replaced with Lambda \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"reaction_0000004\" in default compartment\r\nWriting file: /tmp/tmpj7zz980a.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmphf9ek76_.xml\r\nout: /tmp/tmpj7zz980a.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmpj7zz980a.psc loading ..... \r\nParsing file: /tmp/tmpj7zz980a.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"vca\" has been initialised but does not occur in a rate equation\r\nInfo: \"vk\" has been initialised but does not occur in a rate equation\r\nInfo: \"Cm\" has been initialised but does not occur in a rate equation\r\nInfo: \"gk\" has been initialised but does not occur in a rate equation\r\nInfo: \"gcal\" has been initialised but does not occur in a rate equation\r\nInfo: \"gsk\" has been initialised but does not occur in a rate equation\r\nInfo: \"ga\" has been initialised but does not occur in a rate equation\r\nInfo: \"gf\" has been initialised but does not occur in a rate equation\r\nInfo: \"vn\" has been initialised but does not occur in a rate equation\r\nInfo: \"va\" has been initialised but does not occur in a rate equation\r\nInfo: \"vm\" has been initialised but does not occur in a rate equation\r\nInfo: \"vh\" has been initialised but does not occur in a rate equation\r\nInfo: \"vf\" has been initialised but does not occur in a rate equation\r\nInfo: \"sn\" has been initialised but does not occur in a rate equation\r\nInfo: \"sa\" has been initialised but does not occur in a rate equation\r\nInfo: \"sm\" has been initialised but does not occur in a rate equation\r\nInfo: \"sh\" has been initialised but does not occur in a rate equation\r\nInfo: \"sf\" has been initialised but does not occur in a rate equation\r\nInfo: \"taun\" has been initialised but does not occur in a rate equation\r\nInfo: \"tauh\" has been initialised but does not occur in a rate equation\r\nInfo: \"Lambda\" has been initialised but does not occur in a rate equation\r\nInfo: \"ks\" has been initialised but does not occur in a rate equation\r\nInfo: \"phik\" has been initialised but does not occur in a rate equation\r\nInfo: \"phia\" has been initialised but does not occur in a rate equation\r\nInfo: \"phih\" has been initialised but does not occur in a rate equation\r\nInfo: \"phif\" has been initialised but does not occur in a rate equation\r\nInfo: \"phical\" has been initialised but does not occur in a rate equation\r\nInfo: \"cinf\" has been initialised but does not occur in a rate equation\r\nInfo: \"isk\" has been initialised but does not occur in a rate equation\r\nInfo: \"ibk\" has been initialised but does not occur in a rate equation\r\nInfo: \"ikdr\" has been initialised but does not occur in a rate equation\r\nInfo: \"ia\" has been initialised but does not occur in a rate equation\r\nInfo: \"ik\" has been initialised but does not occur in a rate equation\r\nInfo: \"n\" has been initialised but does not occur in a rate equation\r\nInfo: \"h\" has been initialised but does not occur in a rate equation\r\nInfo: \"V\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . done.\r\nCalculating K matrix . . . . . . . no flux conservation\r\n done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nRate rule(s) detected.\r\nINFO: RateRules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 1001 points: 0.04923725128173828\r\nRateRules evaluated and added to mod.data_sim.\r\n \u001b[31mfailed - 'PysMod' object has no attribute 'lambda'\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[36mqueued\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000138_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 44 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000138_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V1\r\nlambda is a reserved symbol, replacing with Lambda\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmp3gil0fk3.xml\r\n*******************************************************************\r\n\r\nReserved symbol lambda replaced with Lambda \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"reaction_0000004\" in default compartment\r\nWriting file: /tmp/tmpp7d4rg7y.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmp3gil0fk3.xml\r\nout: /tmp/tmpp7d4rg7y.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmpp7d4rg7y.psc loading ..... \r\nParsing file: /tmp/tmpp7d4rg7y.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"vca\" has been initialised but does not occur in a rate equation\r\nInfo: \"vk\" has been initialised but does not occur in a rate equation\r\nInfo: \"Cm\" has been initialised but does not occur in a rate equation\r\nInfo: \"gk\" has been initialised but does not occur in a rate equation\r\nInfo: \"gcal\" has been initialised but does not occur in a rate equation\r\nInfo: \"gsk\" has been initialised but does not occur in a rate equation\r\nInfo: \"ga\" has been initialised but does not occur in a rate equation\r\nInfo: \"gf\" has been initialised but does not occur in a rate equation\r\nInfo: \"vn\" has been initialised but does not occur in a rate equation\r\nInfo: \"va\" has been initialised but does not occur in a rate equation\r\nInfo: \"vm\" has been initialised but does not occur in a rate equation\r\nInfo: \"vh\" has been initialised but does not occur in a rate equation\r\nInfo: \"vf\" has been initialised but does not occur in a rate equation\r\nInfo: \"sn\" has been initialised but does not occur in a rate equation\r\nInfo: \"sa\" has been initialised but does not occur in a rate equation\r\nInfo: \"sm\" has been initialised but does not occur in a rate equation\r\nInfo: \"sh\" has been initialised but does not occur in a rate equation\r\nInfo: \"sf\" has been initialised but does not occur in a rate equation\r\nInfo: \"taun\" has been initialised but does not occur in a rate equation\r\nInfo: \"tauh\" has been initialised but does not occur in a rate equation\r\nInfo: \"Lambda\" has been initialised but does not occur in a rate equation\r\nInfo: \"ks\" has been initialised but does not occur in a rate equation\r\nInfo: \"phik\" has been initialised but does not occur in a rate equation\r\nInfo: \"phia\" has been initialised but does not occur in a rate equation\r\nInfo: \"phih\" has been initialised but does not occur in a rate equation\r\nInfo: \"phif\" has been initialised but does not occur in a rate equation\r\nInfo: \"phical\" has been initialised but does not occur in a rate equation\r\nInfo: \"cinf\" has been initialised but does not occur in a rate equation\r\nInfo: \"isk\" has been initialised but does not occur in a rate equation\r\nInfo: \"ibk\" has been initialised but does not occur in a rate equation\r\nInfo: \"ikdr\" has been initialised but does not occur in a rate equation\r\nInfo: \"ia\" has been initialised but does not occur in a rate equation\r\nInfo: \"ik\" has been initialised but does not occur in a rate equation\r\nInfo: \"n\" has been initialised but does not occur in a rate equation\r\nInfo: \"h\" has been initialised but does not occur in a rate equation\r\nInfo: \"V\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . done.\r\nCalculating K matrix . . . . . . . no flux conservation\r\n done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nRate rule(s) detected.\r\nINFO: RateRules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 30001 points: 1.5136682987213135\r\nRateRules evaluated and added to mod.data_sim.\r\n \u001b[31mfailed - 'PysMod' object has no attribute 'lambda'\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[36mqueued\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", "outputs": [ { "dataSets": [ @@ -1142,7 +1142,7 @@ "status": "SKIPPED" } ], - "duration": 0.054186, + "duration": 0.058535, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -1156,7 +1156,7 @@ "status": "SKIPPED" } ], - "duration": 0.432871, + "duration": 0.299191, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -1169,7 +1169,7 @@ "tasks": [ { "algorithm": null, - "duration": 1.195812, + "duration": 2.78261, "exception": { "message": "'PysMod' object has no attribute 'lambda'", "type": "AttributeError" @@ -1189,11 +1189,11 @@ }, "rbapy": { "response": 201, - "view": "https://api.biosimulations.org/runs/6759995d9fa297efdca4d2f7", - "download": "https://api.biosimulations.org/results/6759995d9fa297efdca4d2f7/download", - "logs": "https://api.biosimulations.org/logs/6759995d9fa297efdca4d2f7?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864e0f1f52f47f628b57ca", + "download": "https://api.biosimulations.org/results/67864e0f1f52f47f628b57ca/download", + "logs": "https://api.biosimulations.org/logs/67864e0f1f52f47f628b57ca?includeOutput=true", "log_yml": { - "duration": 0.191285, + "duration": 0.192293, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./BIOMD0000000138_url.sedml` is invalid.\n - Simulation `auto_ten_seconds` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -1206,11 +1206,11 @@ }, "smoldyn": { "response": 201, - "view": "https://api.biosimulations.org/runs/6759995f707aa64104620cd9", - "download": "https://api.biosimulations.org/results/6759995f707aa64104620cd9/download", - "logs": "https://api.biosimulations.org/logs/6759995f707aa64104620cd9?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864e11167dc18b5b24776f", + "download": "https://api.biosimulations.org/results/67864e11167dc18b5b24776f/download", + "logs": "https://api.biosimulations.org/logs/67864e11167dc18b5b24776f?includeOutput=true", "log_yml": { - "duration": 0.048917, + "duration": 0.05768, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -1223,16 +1223,16 @@ }, "tellurium": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599961707aa64104620ce4", - "download": "https://api.biosimulations.org/results/67599961707aa64104620ce4/download", - "logs": "https://api.biosimulations.org/logs/67599961707aa64104620ce4?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864e12167dc18b5b247774", + "download": "https://api.biosimulations.org/results/67864e12167dc18b5b247774/download", + "logs": "https://api.biosimulations.org/logs/67864e12167dc18b5b247774?includeOutput=true", "log_yml": { - "duration": 1.480166, + "duration": 7.92626, "exception": null, "output": "", "sedDocuments": [ { - "duration": 1.048799, + "duration": 7.550539, "exception": null, "location": "BIOMD0000000138_url.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n BIOMD0000000138_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 44 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000138_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...", @@ -1416,7 +1416,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.279199, + "duration": 6.04438, "exception": null, "id": "autogen_report_for_task1", "output": "", @@ -1430,7 +1430,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.359601, + "duration": 0.979144, "exception": null, "id": "autogen_plot_for_task1", "output": "", @@ -1443,7 +1443,7 @@ "tasks": [ { "algorithm": "KISAO_0000019", - "duration": 0.248306, + "duration": 0.391823, "exception": null, "id": "task1", "output": "", @@ -1517,11 +1517,11 @@ }, "vcell": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599964707aa64104620cf9", - "download": "https://api.biosimulations.org/results/67599964707aa64104620cf9/download", - "logs": "https://api.biosimulations.org/logs/67599964707aa64104620cf9?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864e16167dc18b5b247785", + "download": "https://api.biosimulations.org/results/67864e16167dc18b5b247785/download", + "logs": "https://api.biosimulations.org/logs/67864e16167dc18b5b247785?includeOutput=true", "log_yml": { - "duration": 7, + "duration": 11, "exception": null, "output": "Processing BIOMD0000000138_url.sedml. Done", "sedDocuments": [ @@ -1754,11 +1754,11 @@ }, "xpp": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599966707aa64104620d00", - "download": "https://api.biosimulations.org/results/67599966707aa64104620d00/download", - "logs": "https://api.biosimulations.org/logs/67599966707aa64104620d00?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864e18ba5a3f02b9f2f25f", + "download": "https://api.biosimulations.org/results/67864e18ba5a3f02b9f2f25f/download", + "logs": "https://api.biosimulations.org/logs/67864e18ba5a3f02b9f2f25f?includeOutput=true", "log_yml": { - "duration": 0.047262, + "duration": 0.049439, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" diff --git a/BioModels/BIOMD0000000724/Theinmozhi_2018.omex b/BioModels/BIOMD0000000724/Theinmozhi_2018.omex new file mode 100644 index 0000000000000000000000000000000000000000..7dcbf4bc89954dcca2830d4b911b58d07c190aab GIT binary patch literal 13790 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61d84bab2f93bf0b28ad6baacfa6cdbf018ddcc0..d17e62038a94611367cab0a443f0959471a31127 100644 GIT binary patch delta 24 fcmX?~c0O%`sXn)4XfrY8LfyrhEeSQ`IX}JdQ diff --git a/BioModels/BIOMD0000000724/tests/d1_plots_remote/vcell_plot_8_task2.pdf b/BioModels/BIOMD0000000724/tests/d1_plots_remote/vcell_plot_8_task2.pdf index c1093bdacdf20fcb161f3faa70c5e33a724a7a10..db9b81f43b8b5f6fb21ca116b635c4044f7b5d87 100644 GIT binary patch delta 24 fcmdm9w7qD diff --git a/BioModels/BIOMD0000000724/tests/results_compatibility_biosimulators.md b/BioModels/BIOMD0000000724/tests/results_Theinmozhi_2018.md similarity index 87% rename from BioModels/BIOMD0000000724/tests/results_compatibility_biosimulators.md rename to BioModels/BIOMD0000000724/tests/results_Theinmozhi_2018.md index 1e72fbc4..992f0603 100644 --- a/BioModels/BIOMD0000000724/tests/results_compatibility_biosimulators.md +++ b/BioModels/BIOMD0000000724/tests/results_Theinmozhi_2018.md @@ -1,23 +1,23 @@ | Engine | Compatibility | pass / FAIL (R) | pass / FAIL (L) | d1 (R) | d1 (L) | |:-------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------|:-------------------------------------------------------------| -|
    AMICIhttps://docs.biosimulators.org/Biosimulators_AMICI/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with AMICI.

    SBML and SED-ML are compatible with AMICI.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.

    target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element

    ERROR TYPE:
    CombineArchiveExecutionError
    |
    ❌ FAILERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.

    target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element

    ERROR TYPE:
    CombineArchiveExecutionError
    | plot | plot | -|
    BioNetGenhttps://docs.biosimulators.org/Biosimulators_BioNetGen/
    |
    ⚠ XFAILEXPECTED FAIL

    Only BNGL, SED-ML are compatible with BioNetGen.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    BoolNethttps://docs.biosimulators.org/Biosimulators_BoolNet/
    |
    ⚠ XFAILEXPECTED FAIL

    Only SBML-qual, SED-ML are compatible with BoolNet.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    Brian 2https://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with Brian 2.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    CBMPyhttps://docs.biosimulators.org/Biosimulators_CBMPy/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with CBMPy.

    SBML and SED-ML are compatible with CBMPy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    COBRApyhttps://docs.biosimulators.org/Biosimulators_COBRApy/
    Only allows steady state simulations
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COBRApy.

    SBML and SED-ML are compatible with COBRApy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    COPASIhttps://docs.biosimulators.org/Biosimulators_COPASI/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COPASI.

    SBML and SED-ML are compatible with COPASI.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | -|
    GillesPy2https://docs.biosimulators.org/Biosimulators_GillesPy2/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with GillesPy2.

    SBML and SED-ML are compatible with GillesPy2.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    GINsimhttps://docs.biosimulators.org/Biosimulators_GINsim/
    |
    ⚠ XFAILEXPECTED FAIL

    Only SBML-qual, SED-ML are compatible with GINsim.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    LibSBMLSimhttps://docs.biosimulators.org/Biosimulators_LibSBMLSim/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with LibSBMLSim.

    SBML and SED-ML are compatible with LibSBMLSim.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    MASSpyhttps://docs.biosimulators.org/Biosimulators_MASSpy/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with MASSpy.

    SBML and SED-ML are compatible with MASSpy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    Could not load MassModel '_30356330_Theinmozhi_PDL1_TCR_regulation'

    target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] cannot be changed by XML manipulation, as the target is not an attribute of a model element

    ERROR TYPE:
    CombineArchiveExecutionError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | plot | | -|
    NetPyNEhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with NetPyNE.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    NEURONhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with NEURON.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    OpenCORhttps://docs.biosimulators.org/Biosimulators_OpenCOR/
    |
    ⚠ XFAILEXPECTED FAIL

    Only CellML, SED-ML are compatible with OpenCOR.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    pyNeuroMLhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with pyNeuroML.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    PySCeShttps://docs.biosimulators.org/Biosimulators_PySCeS/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with PySCeS.

    SBML and SED-ML are compatible with PySCeS.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | -|
    RBApyhttps://docs.biosimulators.org/Biosimulators_RBApy/
    |
    ⚠ XFAILEXPECTED FAIL

    Only RBApy, SED-ML are compatible with RBApy.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    Smoldynhttps://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api
    |
    ⚠ XFAILEXPECTED FAIL

    Only Smoldyn, SED-ML are compatible with Smoldyn.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    Error unknown. The log.yml containing error information was not found.

    | | | -|
    Telluriumhttps://docs.biosimulators.org/Biosimulators_tellurium/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with Tellurium.

    SBML and SED-ML are compatible with Tellurium.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | -|
    VCellhttps://github.com/virtualcell/vcell
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with VCell.

    SBML, SED-ML and BNGL are compatible with VCell.
    |
    ✅ PASSview
    download
    logs

    |
    ❌ FAILERROR MESSAGE:
    Runtime Exception

    | plot | | -|
    XPPhttps://docs.biosimulators.org/Biosimulators_XPP/
    |
    ⚠ XFAILEXPECTED FAIL

    Only XPP, SED-ML are compatible with XPP.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | \ No newline at end of file +|
    AMICIhttps://docs.biosimulators.org/Biosimulators_AMICI/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with AMICI.

    SBML and SED-ML are compatible with AMICI.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.

    target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element

    ERROR TYPE:
    CombineArchiveExecutionError
    |
    ❌ FAILERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.

    target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element

    ERROR TYPE:
    CombineArchiveExecutionError
    | plot | plot | +|
    BioNetGenhttps://docs.biosimulators.org/Biosimulators_BioNetGen/
    |
    ⚠ XFAILEXPECTED FAIL

    Only BNGL, SED-ML are compatible with BioNetGen.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    BoolNethttps://docs.biosimulators.org/Biosimulators_BoolNet/
    |
    ⚠ XFAILEXPECTED FAIL

    Only SBML-qual, SED-ML are compatible with BoolNet.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    Brian 2https://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with Brian 2.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    CBMPyhttps://docs.biosimulators.org/Biosimulators_CBMPy/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with CBMPy.

    SBML and SED-ML are compatible with CBMPy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    COBRApyhttps://docs.biosimulators.org/Biosimulators_COBRApy/
    Only allows steady state simulations
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COBRApy.

    SBML and SED-ML are compatible with COBRApy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    COPASIhttps://docs.biosimulators.org/Biosimulators_COPASI/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COPASI.

    SBML and SED-ML are compatible with COPASI.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | +|
    GillesPy2https://docs.biosimulators.org/Biosimulators_GillesPy2/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with GillesPy2.

    SBML and SED-ML are compatible with GillesPy2.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    GINsimhttps://docs.biosimulators.org/Biosimulators_GINsim/
    |
    ⚠ XFAILEXPECTED FAIL

    Only SBML-qual, SED-ML are compatible with GINsim.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    LibSBMLSimhttps://docs.biosimulators.org/Biosimulators_LibSBMLSim/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with LibSBMLSim.

    SBML and SED-ML are compatible with LibSBMLSim.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    MASSpyhttps://docs.biosimulators.org/Biosimulators_MASSpy/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with MASSpy.

    SBML and SED-ML are compatible with MASSpy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    Could not load MassModel '_30356330_Theinmozhi_PDL1_TCR_regulation'

    target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] cannot be changed by XML manipulation, as the target is not an attribute of a model element

    ERROR TYPE:
    CombineArchiveExecutionError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | plot | | +|
    NetPyNEhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with NetPyNE.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    NEURONhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with NEURON.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    OpenCORhttps://docs.biosimulators.org/Biosimulators_OpenCOR/
    |
    ⚠ XFAILEXPECTED FAIL

    Only CellML, SED-ML are compatible with OpenCOR.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    pyNeuroMLhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with pyNeuroML.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    PySCeShttps://docs.biosimulators.org/Biosimulators_PySCeS/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with PySCeS.

    SBML and SED-ML are compatible with PySCeS.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | +|
    RBApyhttps://docs.biosimulators.org/Biosimulators_RBApy/
    |
    ⚠ XFAILEXPECTED FAIL

    Only RBApy, SED-ML are compatible with RBApy.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    Smoldynhttps://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api
    |
    ⚠ XFAILEXPECTED FAIL

    Only Smoldyn, SED-ML are compatible with Smoldyn.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    Error unknown. The log.yml containing error information was not found.

    | | | +|
    Telluriumhttps://docs.biosimulators.org/Biosimulators_tellurium/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with Tellurium.

    SBML and SED-ML are compatible with Tellurium.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | +|
    VCellhttps://github.com/virtualcell/vcell
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with VCell.

    BNGL, SBML and SED-ML are compatible with VCell.
    |
    ✅ PASSview
    download
    logs

    |
    ❌ FAILERROR MESSAGE:
    Runtime Exception

    | plot | | +|
    XPPhttps://docs.biosimulators.org/Biosimulators_XPP/
    |
    ⚠ XFAILEXPECTED FAIL

    Only XPP, SED-ML are compatible with XPP.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | \ No newline at end of file diff --git a/BioModels/BIOMD0000000724/tests/results_local.json b/BioModels/BIOMD0000000724/tests/results_local.json index f5d9c512..ee551b8e 100644 --- a/BioModels/BIOMD0000000724/tests/results_local.json +++ b/BioModels/BIOMD0000000724/tests/results_local.json @@ -2,7 +2,7 @@ "amici": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/amici' returned non-zero exit status 1", "log_yml": { - "duration": 3.673248, + "duration": 4.347384, "exception": { "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.\n \n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element", "type": "CombineArchiveExecutionError" @@ -10,7 +10,7 @@ "output": "", "sedDocuments": [ { - "duration": 3.075882, + "duration": 3.499748, "exception": { "message": "The SED document did not execute successfully:\n\n Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.\n\n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element", "type": "SedmlExecutionError" @@ -25,7 +25,7 @@ "status": "SKIPPED" } ], - "duration": 0.200472, + "duration": 0.208845, "exception": null, "id": "plot_6_task2", "output": "", @@ -39,7 +39,7 @@ "status": "SKIPPED" } ], - "duration": 0.163246, + "duration": 0.404815, "exception": null, "id": "plot_7_task2", "output": "", @@ -57,7 +57,7 @@ "status": "SKIPPED" } ], - "duration": 0.179896, + "duration": 0.205435, "exception": null, "id": "plot_8_task2", "output": "", @@ -71,7 +71,7 @@ "status": "SKIPPED" } ], - "duration": 0.286281, + "duration": 0.264832, "exception": null, "id": "plot_9_task2", "output": "", @@ -85,7 +85,7 @@ "status": "SKIPPED" } ], - "duration": 0.202418, + "duration": 0.208737, "exception": null, "id": "plot_10_task2", "output": "", @@ -575,7 +575,7 @@ "status": "SKIPPED" } ], - "duration": 0.067765, + "duration": 0.062541, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -588,7 +588,7 @@ "tasks": [ { "algorithm": null, - "duration": 0.117533, + "duration": 0.144359, "exception": { "message": "Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.", "type": "SBMLException" @@ -601,7 +601,7 @@ }, { "algorithm": null, - "duration": 0.190501, + "duration": 0.048868, "exception": { "message": "target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element", "type": "ValueError" @@ -623,12 +623,12 @@ "brian2": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/brian2' returned non-zero exit status 1", "log_yml": { - "duration": 0.063489, + "duration": 0.077351, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "WARNING /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp2he3k7kl/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n [py.warnings]\r\npyNeuroML >>> WARNING - /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp2he3k7kl/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n\r\n", + "output": "WARNING /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpm6jblc1r/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n [py.warnings]\r\npyNeuroML >>> WARNING - /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpm6jblc1r/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -638,12 +638,12 @@ "bionetgen": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/bionetgen' returned non-zero exit status 1", "log_yml": { - "duration": 0.269294, + "duration": 0.208906, "exception": { "message": "`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpkblwi4ym/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpzxyaoerj/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -653,12 +653,12 @@ "boolnet": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/boolnet' returned non-zero exit status 1", "log_yml": { - "duration": 0.183914, + "duration": 0.215225, "exception": { "message": "`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpb2cxw46_/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp53yd9x27/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -668,12 +668,12 @@ "cbmpy": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/cbmpy' returned non-zero exit status 1", "log_yml": { - "duration": 0.255235, + "duration": 0.356789, "exception": { "message": "`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "\r\nINFO: No xlwt module available, Excel spreadsheet creation disabled\r\n\r\n\r\n\r\nNo module named 'cplex'\r\n\r\n\r\n\r\nCPLEX not available\r\n\r\n*****\r\nUsing GLPK\r\n*****\r\n\r\n\r\nINFO: No xlrd module available, Excel spreadsheet reading disabled\r\n\r\nCBMPy environment\r\n******************\r\nRevision: r689\r\n\r\n\r\n***********************************************************************\r\n* Welcome to CBMPy (0.7.25) - PySCeS Constraint Based Modelling *\r\n* http://cbmpy.sourceforge.net *\r\n* Copyright(C) Brett G. Olivier 2014 - 2019 *\r\n* Dept. of Systems Bioinformatics *\r\n* Vrije Universiteit Amsterdam, Amsterdam, The Netherlands *\r\n* CBMPy is developed as part of the BeBasic MetaToolKit Project *\r\n* Distributed under the GNU GPL v 3.0 licence, see *\r\n* LICENCE (supplied with this release) for details *\r\n***********************************************************************\r\n\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpg116sky3/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "\r\nINFO: No xlwt module available, Excel spreadsheet creation disabled\r\n\r\n\r\n\r\nNo module named 'cplex'\r\n\r\n\r\n\r\nCPLEX not available\r\n\r\n*****\r\nUsing GLPK\r\n*****\r\n\r\n\r\nINFO: No xlrd module available, Excel spreadsheet reading disabled\r\n\r\nCBMPy environment\r\n******************\r\nRevision: r689\r\n\r\n\r\n***********************************************************************\r\n* Welcome to CBMPy (0.7.25) - PySCeS Constraint Based Modelling *\r\n* http://cbmpy.sourceforge.net *\r\n* Copyright(C) Brett G. Olivier 2014 - 2019 *\r\n* Dept. of Systems Bioinformatics *\r\n* Vrije Universiteit Amsterdam, Amsterdam, The Netherlands *\r\n* CBMPy is developed as part of the BeBasic MetaToolKit Project *\r\n* Distributed under the GNU GPL v 3.0 licence, see *\r\n* LICENCE (supplied with this release) for details *\r\n***********************************************************************\r\n\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp05bauw4w/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -683,12 +683,12 @@ "cobrapy": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/cobrapy' returned non-zero exit status 1", "log_yml": { - "duration": 0.17102, + "duration": 0.184327, "exception": { "message": "`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpoh3n2shi/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpzr0sdqu2/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -698,12 +698,12 @@ "copasi": { "exception_message": "", "log_yml": { - "duration": 3.264843, + "duration": 3.218845, "exception": null, - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp_wddmlq3/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp_wddmlq3/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpvmnf537_/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpvmnf537_/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [ { - "duration": 2.3926, + "duration": 2.649753, "exception": null, "location": "Theinmozhi_2018.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 5 plots:\r\n Theinmozhi_2018.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 120 data sets\r\n Plots (5):\r\n plot_10_task2: 1 curves\r\n plot_6_task2: 1 curves\r\n plot_7_task2: 1 curves\r\n plot_8_task2: 2 curves\r\n plot_9_task2: 1 curves\r\n\r\nExecuting SED-ML file 1: Theinmozhi_2018.sedml ...\r\n Found 1 tasks and 6 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_10_task2`\r\n `plot_6_task2`\r\n `plot_7_task2`\r\n `plot_8_task2`\r\n `plot_9_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 6 outputs ...\r\n Generating output 1: `plot_6_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `plot_7_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 3: `plot_8_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 4: `plot_9_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 5: `plot_10_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 6: `autogen_report_for_task2` ...", @@ -715,7 +715,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.294191, + "duration": 0.307227, "exception": null, "id": "plot_6_task2", "output": "", @@ -729,7 +729,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.220769, + "duration": 0.228237, "exception": null, "id": "plot_7_task2", "output": "", @@ -747,7 +747,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.292428, + "duration": 0.272226, "exception": null, "id": "plot_8_task2", "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", @@ -761,7 +761,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.224587, + "duration": 0.225846, "exception": null, "id": "plot_9_task2", "output": "", @@ -775,7 +775,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.249276, + "duration": 0.259481, "exception": null, "id": "plot_10_task2", "output": "", @@ -1265,7 +1265,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.171407, + "duration": 0.207256, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -1278,10 +1278,10 @@ "tasks": [ { "algorithm": null, - "duration": 0.421953, + "duration": 0.539177, "exception": null, "id": "task2", - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmp_wddmlq3/tmpyynxx_4n.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'LSODA/LSODAR hybrid method' (KISAO_0000560) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmp_wddmlq3/tmp_cf8cs1k.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmpvmnf537_/tmpro7vc74t.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'LSODA/LSODAR hybrid method' (KISAO_0000560) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmpvmnf537_/tmpdmhrebl7.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "simulatorDetails": null, "skipReason": null, "status": "SUCCEEDED" @@ -1297,12 +1297,12 @@ "gillespy2": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/gillespy2' returned non-zero exit status 1", "log_yml": { - "duration": 0.183644, + "duration": 0.235754, "exception": { "message": "`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpbuzu5qga/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp4lbepa5b/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1312,12 +1312,12 @@ "ginsim": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/ginsim' returned non-zero exit status 1", "log_yml": { - "duration": 0.178154, + "duration": 0.261475, "exception": { "message": "`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp598x9i_u/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpxi0szfxu/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1327,12 +1327,12 @@ "libsbmlsim": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/libsbmlsim' returned non-zero exit status 1", "log_yml": { - "duration": 0.218582, + "duration": 0.245851, "exception": { "message": "`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpjghrtv07/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmplghy_3wt/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1342,12 +1342,12 @@ "masspy": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/masspy' returned non-zero exit status 1", "log_yml": { - "duration": 0.166265, + "duration": 0.211936, "exception": { "message": "`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mSedmlFeatureNotSupportedWarning\u001b[0m: \u001b[33m`/tmp/tmph_gz4n19/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mSedmlFeatureNotSupportedWarning\u001b[0m: \u001b[33m`/tmp/tmpj4k1a5u0/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` has warnings.\r\n - Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` has warnings.\r\n - Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` has warnings.\r\n - Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` has warnings.\r\n - Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` has warnings.\r\n - Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` has warnings.\r\n - Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` has warnings.\r\n - Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` has warnings.\r\n - Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` has warnings.\r\n - Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` has warnings.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` has warnings.\r\n - Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` has warnings.\r\n - Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` has warnings.\r\n - Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` has warnings.\r\n - Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` has warnings.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` has warnings.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` has warnings.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` has warnings.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` has warnings.\r\n - Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` has warnings.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` has warnings.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` has warnings.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` has warnings.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` has warnings.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` has warnings.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` has warnings.\r\n - Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` has warnings.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` has warnings.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` has warnings.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` has warnings.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` has warnings.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` has warnings.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` has warnings.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` has warnings.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` has warnings.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` has warnings.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` has warnings.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` has warnings.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` has warnings.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1357,7 +1357,7 @@ "netpyne": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/netpyne' returned non-zero exit status 1", "log_yml": { - "duration": 0.052341, + "duration": 0.072537, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -1372,12 +1372,12 @@ "neuron": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/neuron' returned non-zero exit status 1", "log_yml": { - "duration": 0.059977, + "duration": 0.060662, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp9nxq28uk/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpzkcwevva/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1387,12 +1387,12 @@ "opencor": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/opencor' returned non-zero exit status 1", "log_yml": { - "duration": 0.077544, + "duration": 0.165994, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpbdxtb4_p/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", + "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp8uaqd90g/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1402,12 +1402,12 @@ "pyneuroml": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/pyneuroml' returned non-zero exit status 1", "log_yml": { - "duration": 0.156048, + "duration": 0.067892, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmprw_hwkms/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpb8siw6la/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1417,15 +1417,15 @@ "pysces": { "exception_message": "", "log_yml": { - "duration": 5.153343, + "duration": 4.588674, "exception": null, - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmptpxqie8w/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmptpxqie8w/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp_uw_3qbh/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp_uw_3qbh/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [ { - "duration": 4.599817, + "duration": 4.15613, "exception": null, "location": "Theinmozhi_2018.sedml", - "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 5 plots:\r\n Theinmozhi_2018.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 120 data sets\r\n Plots (5):\r\n plot_10_task2: 1 curves\r\n plot_6_task2: 1 curves\r\n plot_7_task2: 1 curves\r\n plot_8_task2: 2 curves\r\n plot_9_task2: 1 curves\r\n\r\nExecuting SED-ML file 1: Theinmozhi_2018.sedml ...\r\n Found 1 tasks and 6 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_10_task2`\r\n `plot_6_task2`\r\n `plot_7_task2`\r\n `plot_8_task2`\r\n `plot_9_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...Info: single compartment model: locating \"CP2_DP_CP1\" in default compartment\r\nInfo: single compartment model: locating \"CP1_Diss_PD1_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CD28i_P_CD28a\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_DP_CD28i\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_Bd_PI3K\" in default compartment\r\nInfo: single compartment model: locating \"CD3i_P_CD3a\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_DP_CD3i\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_Bd_ZAP70\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70i_P_ZAP70a1\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70a1_P_ZAP70a2\" in default compartment\r\nInfo: single compartment model: locating \"LATi_P_LATa\" in default compartment\r\nInfo: single compartment model: locating \"LATa_Bd_GADS\" in default compartment\r\nInfo: single compartment model: locating \"GADSa_Bd_SLP76\" in default compartment\r\nInfo: single compartment model: locating \"SLP76i_P_SLC76a\" in default compartment\r\nWriting file: /tmp/tmp9diudle9.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpjmnu4i6p.xml\r\nout: /tmp/tmp9diudle9.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmp9diudle9.psc loading ..... \r\nParsing file: /tmp/tmp9diudle9.psc\r\nWarning: species \"LCKinactive\" (fixed) does not occur in any reaction\r\nWarning: species \"CD3t\" (fixed) does not occur in any reaction\r\nWarning: species \"SLP76t\" (fixed) does not occur in any reaction\r\nWarning: species \"GADSt\" (fixed) does not occur in any reaction\r\nWarning: species \"LATt\" (fixed) does not occur in any reaction\r\nWarning: species \"ZAP70t\" (fixed) does not occur in any reaction\r\nWarning: species \"PI3Kt\" (fixed) does not occur in any reaction\r\nWarning: species \"CD28t\" (fixed) does not occur in any reaction\r\nWarning: species \"CPactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKt\" (fixed) does not occur in any reaction\r\nInfo: \"CD28t\" has been initialised but does not occur in a rate equation\r\nInfo: \"PI3Kt\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LATt\" has been initialised but does not occur in a rate equation\r\nInfo: \"GADSt\" has been initialised but does not occur in a rate equation\r\nInfo: \"SLP76t\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCKinactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"Kdpa_yiya\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_bound\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3z_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD28_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_PI3K_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_ZAP70_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y315\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y93\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y505\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y394\" has been initialised but does not occur in a rate equation\r\nInfo: \"LAT_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_active\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_inactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_switch\" has been initialised but does not occur in a rate equation\r\nInfo: \"ModelValue_0\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 101 points: 0.1041567325592041\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 6 outputs ...\r\n Generating output 1: `plot_6_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `plot_7_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 3: `plot_8_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 4: `plot_9_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 5: `plot_10_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 6: `autogen_report_for_task2` ...", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 5 plots:\r\n Theinmozhi_2018.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 120 data sets\r\n Plots (5):\r\n plot_10_task2: 1 curves\r\n plot_6_task2: 1 curves\r\n plot_7_task2: 1 curves\r\n plot_8_task2: 2 curves\r\n plot_9_task2: 1 curves\r\n\r\nExecuting SED-ML file 1: Theinmozhi_2018.sedml ...\r\n Found 1 tasks and 6 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_10_task2`\r\n `plot_6_task2`\r\n `plot_7_task2`\r\n `plot_8_task2`\r\n `plot_9_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...Info: single compartment model: locating \"CP2_DP_CP1\" in default compartment\r\nInfo: single compartment model: locating \"CP1_Diss_PD1_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CD28i_P_CD28a\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_DP_CD28i\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_Bd_PI3K\" in default compartment\r\nInfo: single compartment model: locating \"CD3i_P_CD3a\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_DP_CD3i\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_Bd_ZAP70\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70i_P_ZAP70a1\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70a1_P_ZAP70a2\" in default compartment\r\nInfo: single compartment model: locating \"LATi_P_LATa\" in default compartment\r\nInfo: single compartment model: locating \"LATa_Bd_GADS\" in default compartment\r\nInfo: single compartment model: locating \"GADSa_Bd_SLP76\" in default compartment\r\nInfo: single compartment model: locating \"SLP76i_P_SLC76a\" in default compartment\r\nWriting file: /tmp/tmpdwpjbyma.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpa2el52y_.xml\r\nout: /tmp/tmpdwpjbyma.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmpdwpjbyma.psc loading ..... \r\nParsing file: /tmp/tmpdwpjbyma.psc\r\nWarning: species \"LCKinactive\" (fixed) does not occur in any reaction\r\nWarning: species \"CD3t\" (fixed) does not occur in any reaction\r\nWarning: species \"SLP76t\" (fixed) does not occur in any reaction\r\nWarning: species \"GADSt\" (fixed) does not occur in any reaction\r\nWarning: species \"LATt\" (fixed) does not occur in any reaction\r\nWarning: species \"ZAP70t\" (fixed) does not occur in any reaction\r\nWarning: species \"PI3Kt\" (fixed) does not occur in any reaction\r\nWarning: species \"CD28t\" (fixed) does not occur in any reaction\r\nWarning: species \"CPactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKt\" (fixed) does not occur in any reaction\r\nInfo: \"CD28t\" has been initialised but does not occur in a rate equation\r\nInfo: \"PI3Kt\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LATt\" has been initialised but does not occur in a rate equation\r\nInfo: \"GADSt\" has been initialised but does not occur in a rate equation\r\nInfo: \"SLP76t\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCKinactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"Kdpa_yiya\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_bound\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3z_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD28_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_PI3K_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_ZAP70_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y315\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y93\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y505\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y394\" has been initialised but does not occur in a rate equation\r\nInfo: \"LAT_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_active\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_inactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_switch\" has been initialised but does not occur in a rate equation\r\nInfo: \"ModelValue_0\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 101 points: 0.0960850715637207\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 6 outputs ...\r\n Generating output 1: `plot_6_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `plot_7_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 3: `plot_8_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 4: `plot_9_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 5: `plot_10_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 6: `autogen_report_for_task2` ...", "outputs": [ { "curves": [ @@ -1434,7 +1434,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.32479, + "duration": 0.206273, "exception": null, "id": "plot_6_task2", "output": "", @@ -1448,7 +1448,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.124499, + "duration": 0.12254, "exception": null, "id": "plot_7_task2", "output": "", @@ -1466,7 +1466,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.135296, + "duration": 0.146675, "exception": null, "id": "plot_8_task2", "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", @@ -1480,7 +1480,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.253619, + "duration": 0.125699, "exception": null, "id": "plot_9_task2", "output": "", @@ -1494,7 +1494,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.150726, + "duration": 0.123002, "exception": null, "id": "plot_10_task2", "output": "", @@ -1984,7 +1984,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.201563, + "duration": 0.142105, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -1997,10 +1997,10 @@ "tasks": [ { "algorithm": null, - "duration": 2.725857, + "duration": 2.89098, "exception": null, "id": "task2", - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmp13ztaf41.xml\r\n*******************************************************************\r\n\r\nParameter units ignored for parameters:\r\n['Kdpa_yiya', 'Kdpi_yi', 'Kdpi_yiya', 'Kdpa_ya', 'Kdpa_pi', 'Kpi_i', 'Kpi_ya', 'Kpa_i', 'Kpa_yi', 'Kp_pd1', 'KMp_pd1', 'Ka_shp', 'Kd1_shp', 'Kd2_shp', 'Kdp_cp2', 'Kp_cd28', 'KMp_cd28', 'Kdp_cd28', 'KMdp_cd28', 'Ka_pi3k', 'Kd_pi3k', 'Kp_cd3', 'KMp_cd3', 'Kdp_cd3', 'KMdp_cd3', 'Ka_zap', 'Kd_zap', 'Kp1_zap', 'Kp2_zap', 'Kp_lat', 'Ka_gads', 'Kd_gads', 'Ka_slp', 'Kd_slp', 'Kp_slp', 'perc_SHP2_bound'] \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"LCK_P_LCKyi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCK_P_LCKya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_P_LCKyiya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_P_LCKpi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKya\" in default compartment\r\nInfo: single compartment model: locating \"LCKpi_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"PD1_P_PD1p1_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_P_PD1p2_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"PD1p2_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CP2_Diss_SHP2_PD1p1\" in default compartment\r\nInfo: single compartment model: locating \"CP2_DP_CP1\" in default compartment\r\nInfo: single compartment model: locating \"CP1_Diss_PD1_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CD28i_P_CD28a\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_DP_CD28i\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_Bd_PI3K\" in default compartment\r\nInfo: single compartment model: locating \"CD3i_P_CD3a\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_DP_CD3i\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_Bd_ZAP70\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70i_P_ZAP70a1\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70a1_P_ZAP70a2\" in default compartment\r\nInfo: single compartment model: locating \"LATi_P_LATa\" in default compartment\r\nInfo: single compartment model: locating \"LATa_Bd_GADS\" in default compartment\r\nInfo: single compartment model: locating \"GADSa_Bd_SLP76\" in default compartment\r\nInfo: single compartment model: locating \"SLP76i_P_SLC76a\" in default compartment\r\nWriting file: /tmp/tmp5qc2sv4g.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmp13ztaf41.xml\r\nout: /tmp/tmp5qc2sv4g.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmp5qc2sv4g.psc loading ..... \r\nParsing file: /tmp/tmp5qc2sv4g.psc\r\nWarning: species \"LCKinactive\" (fixed) does not occur in any reaction\r\nWarning: species \"CD3t\" (fixed) does not occur in any reaction\r\nWarning: species \"SLP76t\" (fixed) does not occur in any reaction\r\nWarning: species \"GADSt\" (fixed) does not occur in any reaction\r\nWarning: species \"LATt\" (fixed) does not occur in any reaction\r\nWarning: species \"ZAP70t\" (fixed) does not occur in any reaction\r\nWarning: species \"PI3Kt\" (fixed) does not occur in any reaction\r\nWarning: species \"CD28t\" (fixed) does not occur in any reaction\r\nWarning: species \"CPactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKt\" (fixed) does not occur in any reaction\r\nInfo: \"CD28t\" has been initialised but does not occur in a rate equation\r\nInfo: \"PI3Kt\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LATt\" has been initialised but does not occur in a rate equation\r\nInfo: \"GADSt\" has been initialised but does not occur in a rate equation\r\nInfo: \"SLP76t\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCKinactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"Kdpa_yiya\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_bound\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3z_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD28_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_PI3K_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_ZAP70_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y315\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y93\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y505\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y394\" has been initialised but does not occur in a rate equation\r\nInfo: \"LAT_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_active\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_inactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_switch\" has been initialised but does not occur in a rate equation\r\nInfo: \"ModelValue_0\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 101 points: 0.1160132884979248\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmpjmnu4i6p.xml\r\n*******************************************************************\r\n\r\nParameter units ignored for parameters:\r\n['Kdpa_yiya', 'Kdpi_yi', 'Kdpi_yiya', 'Kdpa_ya', 'Kdpa_pi', 'Kpi_i', 'Kpi_ya', 'Kpa_i', 'Kpa_yi', 'Kp_pd1', 'KMp_pd1', 'Ka_shp', 'Kd1_shp', 'Kd2_shp', 'Kdp_cp2', 'Kp_cd28', 'KMp_cd28', 'Kdp_cd28', 'KMdp_cd28', 'Ka_pi3k', 'Kd_pi3k', 'Kp_cd3', 'KMp_cd3', 'Kdp_cd3', 'KMdp_cd3', 'Ka_zap', 'Kd_zap', 'Kp1_zap', 'Kp2_zap', 'Kp_lat', 'Ka_gads', 'Kd_gads', 'Ka_slp', 'Kd_slp', 'Kp_slp', 'perc_SHP2_bound'] \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"LCK_P_LCKyi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCK_P_LCKya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_P_LCKyiya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_P_LCKpi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKya\" in default compartment\r\nInfo: single compartment model: locating \"LCKpi_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"PD1_P_PD1p1_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_P_PD1p2_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"PD1p2_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CP2_Diss_SHP2_PD1p1\" in default compartment\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmp86t_vtdr.xml\r\n*******************************************************************\r\n\r\nParameter units ignored for parameters:\r\n['Kdpa_yiya', 'Kdpi_yi', 'Kdpi_yiya', 'Kdpa_ya', 'Kdpa_pi', 'Kpi_i', 'Kpi_ya', 'Kpa_i', 'Kpa_yi', 'Kp_pd1', 'KMp_pd1', 'Ka_shp', 'Kd1_shp', 'Kd2_shp', 'Kdp_cp2', 'Kp_cd28', 'KMp_cd28', 'Kdp_cd28', 'KMdp_cd28', 'Ka_pi3k', 'Kd_pi3k', 'Kp_cd3', 'KMp_cd3', 'Kdp_cd3', 'KMdp_cd3', 'Ka_zap', 'Kd_zap', 'Kp1_zap', 'Kp2_zap', 'Kp_lat', 'Ka_gads', 'Kd_gads', 'Ka_slp', 'Kd_slp', 'Kp_slp', 'perc_SHP2_bound'] \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"LCK_P_LCKyi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCK_P_LCKya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_P_LCKyiya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_P_LCKpi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKya\" in default compartment\r\nInfo: single compartment model: locating \"LCKpi_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"PD1_P_PD1p1_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_P_PD1p2_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"PD1p2_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CP2_Diss_SHP2_PD1p1\" in default compartment\r\nInfo: single compartment model: locating \"CP2_DP_CP1\" in default compartment\r\nInfo: single compartment model: locating \"CP1_Diss_PD1_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CD28i_P_CD28a\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_DP_CD28i\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_Bd_PI3K\" in default compartment\r\nInfo: single compartment model: locating \"CD3i_P_CD3a\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_DP_CD3i\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_Bd_ZAP70\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70i_P_ZAP70a1\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70a1_P_ZAP70a2\" in default compartment\r\nInfo: single compartment model: locating \"LATi_P_LATa\" in default compartment\r\nInfo: single compartment model: locating \"LATa_Bd_GADS\" in default compartment\r\nInfo: single compartment model: locating \"GADSa_Bd_SLP76\" in default compartment\r\nInfo: single compartment model: locating \"SLP76i_P_SLC76a\" in default compartment\r\nWriting file: /tmp/tmpvvcxds2u.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmp86t_vtdr.xml\r\nout: /tmp/tmpvvcxds2u.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmpvvcxds2u.psc loading ..... \r\nParsing file: /tmp/tmpvvcxds2u.psc\r\nWarning: species \"LCKinactive\" (fixed) does not occur in any reaction\r\nWarning: species \"CD3t\" (fixed) does not occur in any reaction\r\nWarning: species \"SLP76t\" (fixed) does not occur in any reaction\r\nWarning: species \"GADSt\" (fixed) does not occur in any reaction\r\nWarning: species \"LATt\" (fixed) does not occur in any reaction\r\nWarning: species \"ZAP70t\" (fixed) does not occur in any reaction\r\nWarning: species \"PI3Kt\" (fixed) does not occur in any reaction\r\nWarning: species \"CD28t\" (fixed) does not occur in any reaction\r\nWarning: species \"CPactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKt\" (fixed) does not occur in any reaction\r\nInfo: \"CD28t\" has been initialised but does not occur in a rate equation\r\nInfo: \"PI3Kt\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LATt\" has been initialised but does not occur in a rate equation\r\nInfo: \"GADSt\" has been initialised but does not occur in a rate equation\r\nInfo: \"SLP76t\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCKinactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"Kdpa_yiya\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_bound\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3z_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD28_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_PI3K_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_ZAP70_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y315\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y93\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y505\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y394\" has been initialised but does not occur in a rate equation\r\nInfo: \"LAT_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_active\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_inactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_switch\" has been initialised but does not occur in a rate equation\r\nInfo: \"ModelValue_0\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 101 points: 0.11348104476928711\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmpa2el52y_.xml\r\n*******************************************************************\r\n\r\nParameter units ignored for parameters:\r\n['Kdpa_yiya', 'Kdpi_yi', 'Kdpi_yiya', 'Kdpa_ya', 'Kdpa_pi', 'Kpi_i', 'Kpi_ya', 'Kpa_i', 'Kpa_yi', 'Kp_pd1', 'KMp_pd1', 'Ka_shp', 'Kd1_shp', 'Kd2_shp', 'Kdp_cp2', 'Kp_cd28', 'KMp_cd28', 'Kdp_cd28', 'KMdp_cd28', 'Ka_pi3k', 'Kd_pi3k', 'Kp_cd3', 'KMp_cd3', 'Kdp_cd3', 'KMdp_cd3', 'Ka_zap', 'Kd_zap', 'Kp1_zap', 'Kp2_zap', 'Kp_lat', 'Ka_gads', 'Kd_gads', 'Ka_slp', 'Kd_slp', 'Kp_slp', 'perc_SHP2_bound'] \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"LCK_P_LCKyi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCK_P_LCKya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_P_LCKyiya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_P_LCKpi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKya\" in default compartment\r\nInfo: single compartment model: locating \"LCKpi_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"PD1_P_PD1p1_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_P_PD1p2_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"PD1p2_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CP2_Diss_SHP2_PD1p1\" in default compartment\r\n", "simulatorDetails": null, "skipReason": null, "status": "SUCCEEDED" @@ -2016,12 +2016,12 @@ "rbapy": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/rbapy' returned non-zero exit status 1", "log_yml": { - "duration": 0.174784, + "duration": 0.240783, "exception": { "message": "`/root/in/Theinmozhi_2018.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmprdbjcrqy/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpn09z4at4/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Theinmozhi_2018.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '1.2e-7 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '2.4e-5 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKinactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCKactive / (LCKi + LCKpi + LCKya + LCKyi + LCKyiya) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'ZAP70 / (ZAP70 + ZAP70i + ZAP70a1 + ZAP70a2) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'PI3K / (PI3Kb + PI3K) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '6e-6 * ModelValue_0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'SHP2 / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'CPactive / (SHP2 + CPactive) * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Cell * Equation_for_PD1_activation(Kp_pd1, LCKactive, PD1, KMp_pd1, PD1p1, PD1p2, LCKt, k)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD3z_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CD28_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_SHP2_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_PI3K_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_ZAP70_free' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y315' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ZAP70_phos_Y93' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y505' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_phos_Y394' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LAT_phosphorylated' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_active' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'perc_LCK_inactive' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'LCK_switch' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ModelValue_0' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_PI3K_free_1_task2` may be invalid.\r\n - Variable `p1_perc_PI3K_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_ZAP70_free_1_task2` may be invalid.\r\n - Variable `p2_perc_ZAP70_free_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_active_1_task2` may be invalid.\r\n - Variable `p3_perc_LCK_active_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `perc_LCK_inactive_2_task2` may be invalid.\r\n - Variable `p3_perc_LCK_inactive_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `SLP76a_1_task2` may be invalid.\r\n - Variable `p4_SLP76a_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `ZAP70a2_1_task2` may be invalid.\r\n - Variable `p5_ZAP70a2_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKt` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CPactive` may be invalid.\r\n - Variable `auto_dg_for_task2_CPactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kb` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kb__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PI3Kt` may be invalid.\r\n - Variable `auto_dg_for_task2_PI3Kt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70t` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATt` may be invalid.\r\n - Variable `auto_dg_for_task2_LATt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSt` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76t` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3t` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3t__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKinactive` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKinactive__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpi_yiya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpi_yiya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdpa_pi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdpa_pi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpi_ya` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpi_ya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_i` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kpa_yi` may be invalid.\r\n - Variable `auto_dg_for_task2_Kpa_yi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_k` may be invalid.\r\n - Variable `auto_dg_for_task2_k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_pd1` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_pd1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd1_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd1_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd2_shp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd2_shp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cp2` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cp2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd28` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd28__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_pi3k` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_pi3k__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_Kdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_KMdp_cd3` may be invalid.\r\n - Variable `auto_dg_for_task2_KMdp_cd3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp1_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp1_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp2_zap` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp2_zap__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_lat` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_lat__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_gads` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_gads__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Ka_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Ka_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kd_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kd_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Kp_slp` may be invalid.\r\n - Variable `auto_dg_for_task2_Kp_slp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_bound` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_bound__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3z_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3z_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_perc_SHP2_free` may be invalid.\r\n - Variable `auto_dg_for_task2_perc_SHP2_free__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y315` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70_phos_Y93` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y505` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y505__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_phos_Y394` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_phos_Y394__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LAT_phosphorylated` may be invalid.\r\n - Variable `auto_dg_for_task2_LAT_phosphorylated__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_switch` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_switch__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ModelValue_0` may be invalid.\r\n - Variable `auto_dg_for_task2_ModelValue_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Cell` may be invalid.\r\n - Variable `auto_dg_for_task2_Cell__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKyi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCK_P_LCKya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_P_LCKyiya_act` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_P_LCKpi_inh` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKya_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyi_DP_LCKi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKyiya_DP_LCKya` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LCKpi_DP_LCKyi` may be invalid.\r\n - Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1_P_PD1p1_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_P_PD1p2_act` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p1_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_PD1p2_Bd_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP2_DP_CP1` may be invalid.\r\n - Variable `auto_dg_for_task2_CP2_DP_CP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CP1_Diss_PD1_SHP2` may be invalid.\r\n - Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28i_P_CD28a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28i_P_CD28a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_DP_CD28i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD28a_Bd_PI3K` may be invalid.\r\n - Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3i_P_CD3a` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3i_P_CD3a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_DP_CD3i` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CD3a_Bd_ZAP70` may be invalid.\r\n - Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70i_P_ZAP70a1` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ZAP70a1_P_ZAP70a2` may be invalid.\r\n - Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATi_P_LATa` may be invalid.\r\n - Variable `auto_dg_for_task2_LATi_P_LATa__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_LATa_Bd_GADS` may be invalid.\r\n - Variable `auto_dg_for_task2_LATa_Bd_GADS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_GADSa_Bd_SLP76` may be invalid.\r\n - Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SLP76i_P_SLC76a` may be invalid.\r\n - Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_6_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_7_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_8_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_9_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `plot_10_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -2036,12 +2036,12 @@ "tellurium": { "exception_message": "", "log_yml": { - "duration": 3.089811, + "duration": 3.399238, "exception": null, - "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmpi_5yhy86/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmpi_5yhy86/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n", + "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmpaiktkg5q/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Theinmozhi_2018.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmpaiktkg5q/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_6_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_7_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_8_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_9_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `plot_10_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n", "sedDocuments": [ { - "duration": 2.523413, + "duration": 2.571369, "exception": null, "location": "Theinmozhi_2018.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 5 plots:\r\n Theinmozhi_2018.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 120 data sets\r\n Plots (5):\r\n plot_10_task2: 1 curves\r\n plot_6_task2: 1 curves\r\n plot_7_task2: 1 curves\r\n plot_8_task2: 2 curves\r\n plot_9_task2: 1 curves\r\n\r\nExecuting SED-ML file 1: Theinmozhi_2018.sedml ...\r\n Found 1 tasks and 6 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_10_task2`\r\n `plot_6_task2`\r\n `plot_7_task2`\r\n `plot_8_task2`\r\n `plot_9_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 6 outputs ...\r\n Generating output 1: `plot_6_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `plot_7_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 3: `plot_8_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 4: `plot_9_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 5: `plot_10_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 6: `autogen_report_for_task2` ...", @@ -2053,7 +2053,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.287259, + "duration": 0.300733, "exception": null, "id": "plot_6_task2", "output": "", @@ -2067,7 +2067,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.20391, + "duration": 0.218464, "exception": null, "id": "plot_7_task2", "output": "", @@ -2085,7 +2085,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.426901, + "duration": 0.438787, "exception": null, "id": "plot_8_task2", "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning:\r\n\r\n\u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n\r\n", @@ -2099,7 +2099,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.434322, + "duration": 0.227426, "exception": null, "id": "plot_9_task2", "output": "", @@ -2113,7 +2113,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.228164, + "duration": 0.301805, "exception": null, "id": "plot_10_task2", "output": "", @@ -2603,7 +2603,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.203789, + "duration": 0.230141, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -2616,10 +2616,10 @@ "tasks": [ { "algorithm": null, - "duration": 0.228865, + "duration": 0.291107, "exception": null, "id": "task2", - "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33m- Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKinactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kb__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa_Bd_GADS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_bound__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKyi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i_P_CD28a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_Bd_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_active_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmpi_5yhy86/./Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning:\r\n\r\n\u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mAlgorithm parameter with KiSAO id 'KISAO_0000216' was ignored because it is not supported. Parameter must have one of the following KiSAO ids:\r\n - KISAO_0000209: relative_tolerance (relative tolerance)\r\n - KISAO_0000211: absolute_tolerance (absolute tolerance)\r\n - KISAO_0000571: absolute_tolerance_adjustment_factor (absolute tolerance adjustment factor)\r\n - KISAO_0000220: maximum_bdf_order (Maximum Backward Differentiation Formula (BDF) order)\r\n - KISAO_0000219: maximum_adams_order (Maximum Adams order)\r\n - KISAO_0000415: maximum_num_steps (Maximum number of steps)\r\n - KISAO_0000467: maximum_time_step (Maximum time step)\r\n - KISAO_0000485: minimum_time_step (Minimum time step)\r\n - KISAO_0000559: initial_time_step (Initial time step)\r\n - KISAO_0000671: stiff (Stiff)\r\n - KISAO_0000670: multiple_steps (Multiple steps)\u001b[0m\r\n\r\n", + "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33m- Variable `auto_dg_for_task2_GADSa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1_P_ZAP70a2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_lat__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1_P_PD1p2_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3Kt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd2_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p5_ZAP70a2_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1_P_PD1p1_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_Bd_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_DP_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpa_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpi_yi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_P_LCKya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSa_Bd_SLP76__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp2_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_ya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i_P_SLC76a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i_P_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi_P_LATa__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_yiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SLP76t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd1_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKpi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP2_Diss_SHP2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMdp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p4_SLP76a_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kpi_i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y315__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3z_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_P_LCKpi_inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdpa_pi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LATi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p3_perc_LCK_inactive_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_switch__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a_DP_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyi_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p2_perc_ZAP70_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70_phos_Y93__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_DP_LCKi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y394__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_slp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1p2_Bd_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Ka_shp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_GADSt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CP1_Diss_PD1_SHP2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PD1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_cd3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kdp_cp2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ModelValue_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3a_DP_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya_DP_LCKyi__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKyiya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LAT_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCK_phos_Y505__x` has warnings.\r\n - 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XPath could not be validated.\r\n- Variable `auto_dg_for_task2_perc_SHP2_free__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Cell__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_KMp_pd1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_perc_PI3K_free_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_PI3K__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp1_zap__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kp_cd28__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CPactive__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_LCKya_P_LCKyiya_act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70i_P_ZAP70a1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28_phosphorylated__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_gads__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Kd_pi3k__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD3i__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ZAP70t__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CD28a__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmpaiktkg5q/./Theinmozhi_2018.xml` has warnings.\r\n - 13 warnings of type SBML unit consistency (99505). The following is the first warning at line 2568, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'LCK_switch' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 15 warnings of type Modeling practice (80701). The following is the first warning at line 1946, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'k' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning:\r\n\r\n\u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mAlgorithm parameter with KiSAO id 'KISAO_0000216' was ignored because it is not supported. Parameter must have one of the following KiSAO ids:\r\n - KISAO_0000209: relative_tolerance (relative tolerance)\r\n - KISAO_0000211: absolute_tolerance (absolute tolerance)\r\n - KISAO_0000571: absolute_tolerance_adjustment_factor (absolute tolerance adjustment factor)\r\n - KISAO_0000220: maximum_bdf_order (Maximum Backward Differentiation Formula (BDF) order)\r\n - KISAO_0000219: maximum_adams_order (Maximum Adams order)\r\n - KISAO_0000415: maximum_num_steps (Maximum number of steps)\r\n - KISAO_0000467: maximum_time_step (Maximum time step)\r\n - KISAO_0000485: minimum_time_step (Minimum time step)\r\n - KISAO_0000559: initial_time_step (Initial time step)\r\n - KISAO_0000671: stiff (Stiff)\r\n - KISAO_0000670: multiple_steps (Multiple steps)\u001b[0m\r\n\r\n", "simulatorDetails": null, "skipReason": null, "status": "SUCCEEDED" @@ -2635,7 +2635,7 @@ "vcell": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/vcell' returned non-zero exit status 1", "log_yml": { - "duration": 4, + "duration": 7, "exception": null, "output": "Processing Theinmozhi_2018.sedml. Done", "sedDocuments": [ @@ -3250,12 +3250,12 @@ "xpp": { "exception_message": "Command '-i '/root/in/Theinmozhi_2018.omex' -o /root/out' in image 'ghcr.io/biosimulators/xpp' returned non-zero exit status 1", "log_yml": { - "duration": 0.051701, + "duration": 0.133041, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpqyuyjj9l/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmprkykyfaz/./Theinmozhi_2018.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" diff --git a/BioModels/BIOMD0000000724/tests/results_remote.json b/BioModels/BIOMD0000000724/tests/results_remote.json index 3474c44c..25107a5a 100644 --- a/BioModels/BIOMD0000000724/tests/results_remote.json +++ b/BioModels/BIOMD0000000724/tests/results_remote.json @@ -1,11 +1,11 @@ { "amici": { "response": 201, - "view": "https://api.biosimulations.org/runs/675999e9c3054f763d585989", - "download": "https://api.biosimulations.org/results/675999e9c3054f763d585989/download", - "logs": "https://api.biosimulations.org/logs/675999e9c3054f763d585989?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864eee1f52f47f628b5857", + "download": "https://api.biosimulations.org/results/67864eee1f52f47f628b5857/download", + "logs": "https://api.biosimulations.org/logs/67864eee1f52f47f628b5857?includeOutput=true", "log_yml": { - "duration": 2.719446, + "duration": 2.767317, "exception": { "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.\n \n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element", "type": "CombineArchiveExecutionError" @@ -13,7 +13,7 @@ "output": "", "sedDocuments": [ { - "duration": 2.213391, + "duration": 2.2879, "exception": { "message": "The SED document did not execute successfully:\n\n Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.\n\n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element", "type": "SedmlExecutionError" @@ -28,7 +28,7 @@ "status": "SKIPPED" } ], - "duration": 0.102998, + "duration": 0.093385, "exception": null, "id": "plot_6_task2", "output": "", @@ -42,7 +42,7 @@ "status": "SKIPPED" } ], - "duration": 0.104245, + "duration": 0.093117, "exception": null, "id": "plot_7_task2", "output": "", @@ -60,7 +60,7 @@ "status": "SKIPPED" } ], - "duration": 0.109426, + "duration": 0.095649, "exception": null, "id": "plot_8_task2", "output": "", @@ -74,7 +74,7 @@ "status": "SKIPPED" } ], - "duration": 0.106596, + "duration": 0.095253, "exception": null, "id": "plot_9_task2", "output": "", @@ -88,7 +88,7 @@ "status": "SKIPPED" } ], - "duration": 0.104431, + "duration": 0.096414, "exception": null, "id": "plot_10_task2", "output": "", @@ -578,7 +578,7 @@ "status": "SKIPPED" } ], - "duration": 0.053558, + "duration": 0.049193, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -591,7 +591,7 @@ "tasks": [ { "algorithm": null, - "duration": 0.153917, + "duration": 0.15719, "exception": { "message": "Cannot turn parameter ModelValue_0 into a constant/fixed parameter since it either has an initial assignment or is the target of an assignment or rate rule.", "type": "SBMLException" @@ -604,7 +604,7 @@ }, { "algorithm": null, - "duration": 0.041214, + "duration": 0.040684, "exception": { "message": "target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] is not a valid XPath to an attribute of a model element", "type": "ValueError" @@ -624,11 +624,11 @@ }, "brian2": { "response": 201, - "view": "https://api.biosimulations.org/runs/675999ebc3054f763d58598f", - "download": "https://api.biosimulations.org/results/675999ebc3054f763d58598f/download", - "logs": "https://api.biosimulations.org/logs/675999ebc3054f763d58598f?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864ef1167dc18b5b2477f5", + "download": "https://api.biosimulations.org/results/67864ef1167dc18b5b2477f5/download", + "logs": "https://api.biosimulations.org/logs/67864ef1167dc18b5b2477f5?includeOutput=true", "log_yml": { - "duration": 0.08301, + "duration": 0.058549, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -641,11 +641,11 @@ }, "bionetgen": { "response": 201, - "view": "https://api.biosimulations.org/runs/675999ec707aa64104620d7c", - "download": "https://api.biosimulations.org/results/675999ec707aa64104620d7c/download", - "logs": "https://api.biosimulations.org/logs/675999ec707aa64104620d7c?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864ef2167dc18b5b2477f8", + "download": "https://api.biosimulations.org/results/67864ef2167dc18b5b2477f8/download", + "logs": "https://api.biosimulations.org/logs/67864ef2167dc18b5b2477f8?includeOutput=true", "log_yml": { - "duration": 0.25008, + "duration": 0.232346, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -658,11 +658,11 @@ }, "boolnet": { "response": 201, - "view": "https://api.biosimulations.org/runs/675999eec3054f763d585992", - "download": "https://api.biosimulations.org/results/675999eec3054f763d585992/download", - "logs": "https://api.biosimulations.org/logs/675999eec3054f763d585992?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864ef41f52f47f628b585b", + "download": "https://api.biosimulations.org/results/67864ef41f52f47f628b585b/download", + "logs": "https://api.biosimulations.org/logs/67864ef41f52f47f628b585b?includeOutput=true", "log_yml": { - "duration": 0.264474, + "duration": 0.235421, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -675,11 +675,11 @@ }, "cbmpy": { "response": 201, - "view": "https://api.biosimulations.org/runs/675999f0c3054f763d585995", - "download": "https://api.biosimulations.org/results/675999f0c3054f763d585995/download", - "logs": "https://api.biosimulations.org/logs/675999f0c3054f763d585995?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864ef6ba5a3f02b9f2f2ca", + "download": "https://api.biosimulations.org/results/67864ef6ba5a3f02b9f2f2ca/download", + "logs": "https://api.biosimulations.org/logs/67864ef6ba5a3f02b9f2f2ca?includeOutput=true", "log_yml": { - "duration": 0.350226, + "duration": 0.321103, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -692,11 +692,11 @@ }, "cobrapy": { "response": 201, - "view": "https://api.biosimulations.org/runs/675999f29fa297efdca4d39e", - "download": "https://api.biosimulations.org/results/675999f29fa297efdca4d39e/download", - "logs": "https://api.biosimulations.org/logs/675999f29fa297efdca4d39e?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864ef8167dc18b5b2477fb", + "download": "https://api.biosimulations.org/results/67864ef8167dc18b5b2477fb/download", + "logs": "https://api.biosimulations.org/logs/67864ef8167dc18b5b2477fb?includeOutput=true", "log_yml": { - "duration": 0.261318, + "duration": 0.226439, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -709,16 +709,16 @@ }, "copasi": { "response": 201, - "view": "https://api.biosimulations.org/runs/675999f4c3054f763d58599e", - "download": "https://api.biosimulations.org/results/675999f4c3054f763d58599e/download", - "logs": "https://api.biosimulations.org/logs/675999f4c3054f763d58599e?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864efa1f52f47f628b5861", + "download": "https://api.biosimulations.org/results/67864efa1f52f47f628b5861/download", + "logs": "https://api.biosimulations.org/logs/67864efa1f52f47f628b5861?includeOutput=true", "log_yml": { - "duration": 2.715015, + "duration": 2.659893, "exception": null, "output": "", "sedDocuments": [ { - "duration": 2.186595, + "duration": 2.15223, "exception": null, "location": "Theinmozhi_2018.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 5 plots:\r\n Theinmozhi_2018.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 120 data sets\r\n Plots (5):\r\n plot_10_task2: 1 curves\r\n plot_6_task2: 1 curves\r\n plot_7_task2: 1 curves\r\n plot_8_task2: 2 curves\r\n plot_9_task2: 1 curves\r\n\r\nExecuting SED-ML file 1: Theinmozhi_2018.sedml ...\r\n Found 1 tasks and 6 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_10_task2`\r\n `plot_6_task2`\r\n `plot_7_task2`\r\n `plot_8_task2`\r\n `plot_9_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...woohoo!\r\nwoohoo!\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 6 outputs ...\r\n Generating output 1: `plot_6_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `plot_7_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 3: `plot_8_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 4: `plot_9_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 5: `plot_10_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 6: `autogen_report_for_task2` ...", @@ -730,7 +730,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.44773, + "duration": 0.394502, "exception": null, "id": "plot_6_task2", "output": "", @@ -744,7 +744,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.125284, + "duration": 0.154193, "exception": null, "id": "plot_7_task2", "output": "", @@ -762,7 +762,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.1364, + "duration": 0.130904, "exception": null, "id": "plot_8_task2", "output": "", @@ -776,7 +776,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.118575, + "duration": 0.114846, "exception": null, "id": "plot_9_task2", "output": "", @@ -790,7 +790,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.120286, + "duration": 0.192676, "exception": null, "id": "plot_10_task2", "output": "", @@ -1280,7 +1280,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.204297, + "duration": 0.193286, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -1293,7 +1293,7 @@ "tasks": [ { "algorithm": null, - "duration": 0.629107, + "duration": 0.576658, "exception": null, "id": "task2", "output": "", @@ -1310,11 +1310,11 @@ }, "gillespy2": { "response": 201, - "view": "https://api.biosimulations.org/runs/675999f69fa297efdca4d3a4", - "download": "https://api.biosimulations.org/results/675999f69fa297efdca4d3a4/download", - "logs": "https://api.biosimulations.org/logs/675999f69fa297efdca4d3a4?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864efcba5a3f02b9f2f2d1", + "download": "https://api.biosimulations.org/results/67864efcba5a3f02b9f2f2d1/download", + "logs": "https://api.biosimulations.org/logs/67864efcba5a3f02b9f2f2d1?includeOutput=true", "log_yml": { - "duration": 0.256454, + "duration": 0.2418, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -1327,11 +1327,11 @@ }, "ginsim": { "response": 201, - "view": "https://api.biosimulations.org/runs/675999f89fa297efdca4d3a9", - "download": "https://api.biosimulations.org/results/675999f89fa297efdca4d3a9/download", - "logs": "https://api.biosimulations.org/logs/675999f89fa297efdca4d3a9?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864efe167dc18b5b247805", + "download": "https://api.biosimulations.org/results/67864efe167dc18b5b247805/download", + "logs": "https://api.biosimulations.org/logs/67864efe167dc18b5b247805?includeOutput=true", "log_yml": { - "duration": 0.25789, + "duration": 0.24387, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -1344,11 +1344,11 @@ }, "libsbmlsim": { "response": 201, - "view": "https://api.biosimulations.org/runs/675999fac3054f763d5859a8", - "download": "https://api.biosimulations.org/results/675999fac3054f763d5859a8/download", - "logs": "https://api.biosimulations.org/logs/675999fac3054f763d5859a8?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864f00167dc18b5b24780b", + "download": "https://api.biosimulations.org/results/67864f00167dc18b5b24780b/download", + "logs": "https://api.biosimulations.org/logs/67864f00167dc18b5b24780b?includeOutput=true", "log_yml": { - "duration": 0.248469, + "duration": 0.227017, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -1361,11 +1361,11 @@ }, "masspy": { "response": 201, - "view": "https://api.biosimulations.org/runs/675999fc707aa64104620d98", - "download": "https://api.biosimulations.org/results/675999fc707aa64104620d98/download", - "logs": "https://api.biosimulations.org/logs/675999fc707aa64104620d98?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864f02ba5a3f02b9f2f2de", + "download": "https://api.biosimulations.org/results/67864f02ba5a3f02b9f2f2de/download", + "logs": "https://api.biosimulations.org/logs/67864f02ba5a3f02b9f2f2de?includeOutput=true", "log_yml": { - "duration": 3.400673, + "duration": 3.505598, "exception": { "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n Could not load MassModel '_30356330_Theinmozhi_PDL1_TCR_regulation'\n \n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] cannot be changed by XML manipulation, as the target is not an attribute of a model element", "type": "CombineArchiveExecutionError" @@ -1373,7 +1373,7 @@ "output": "", "sedDocuments": [ { - "duration": 2.760737, + "duration": 2.90163, "exception": { "message": "The SED document did not execute successfully:\n\n Could not load MassModel '_30356330_Theinmozhi_PDL1_TCR_regulation'\n\n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] cannot be changed by XML manipulation, as the target is not an attribute of a model element", "type": "SedmlExecutionError" @@ -1388,7 +1388,7 @@ "status": "SKIPPED" } ], - "duration": 0.24384, + "duration": 0.246963, "exception": null, "id": "plot_6_task2", "output": "", @@ -1402,7 +1402,7 @@ "status": "SKIPPED" } ], - "duration": 0.104923, + "duration": 0.102973, "exception": null, "id": "plot_7_task2", "output": "", @@ -1420,7 +1420,7 @@ "status": "SKIPPED" } ], - "duration": 0.10428, + "duration": 0.108216, "exception": null, "id": "plot_8_task2", "output": "", @@ -1434,7 +1434,7 @@ "status": "SKIPPED" } ], - "duration": 0.106551, + "duration": 0.115844, "exception": null, "id": "plot_9_task2", "output": "", @@ -1448,7 +1448,7 @@ "status": "SKIPPED" } ], - "duration": 0.1105, + "duration": 0.201625, "exception": null, "id": "plot_10_task2", "output": "", @@ -1938,7 +1938,7 @@ "status": "SKIPPED" } ], - "duration": 0.055107, + "duration": 0.052627, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -1951,7 +1951,7 @@ "tasks": [ { "algorithm": null, - "duration": 0.46494, + "duration": 0.452525, "exception": { "message": "Could not load MassModel '_30356330_Theinmozhi_PDL1_TCR_regulation'", "type": "MassSimulationError" @@ -1964,7 +1964,7 @@ }, { "algorithm": null, - "duration": 0.042945, + "duration": 0.04205, "exception": { "message": "target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='LCK_switch'] cannot be changed by XML manipulation, as the target is not an attribute of a model element", "type": "NotImplementedError" @@ -1984,11 +1984,11 @@ }, "netpyne": { "response": 201, - "view": "https://api.biosimulations.org/runs/675999fdc3054f763d5859af", - "download": "https://api.biosimulations.org/results/675999fdc3054f763d5859af/download", - "logs": "https://api.biosimulations.org/logs/675999fdc3054f763d5859af?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864f04ba5a3f02b9f2f2e4", + "download": "https://api.biosimulations.org/results/67864f04ba5a3f02b9f2f2e4/download", + "logs": "https://api.biosimulations.org/logs/67864f04ba5a3f02b9f2f2e4?includeOutput=true", "log_yml": { - "duration": 0.077607, + "duration": 0.057082, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -2001,11 +2001,11 @@ }, "neuron": { "response": 201, - "view": "https://api.biosimulations.org/runs/675999ff707aa64104620db2", - "download": "https://api.biosimulations.org/results/675999ff707aa64104620db2/download", - "logs": "https://api.biosimulations.org/logs/675999ff707aa64104620db2?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864f06ba5a3f02b9f2f2ec", + "download": "https://api.biosimulations.org/results/67864f06ba5a3f02b9f2f2ec/download", + "logs": "https://api.biosimulations.org/logs/67864f06ba5a3f02b9f2f2ec?includeOutput=true", "log_yml": { - "duration": 0.068771, + "duration": 0.055155, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -2018,16 +2018,16 @@ }, "opencor": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599a019fa297efdca4d3dc", - "download": "https://api.biosimulations.org/results/67599a019fa297efdca4d3dc/download", - "logs": "https://api.biosimulations.org/logs/67599a019fa297efdca4d3dc?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864f08167dc18b5b247831", + "download": "https://api.biosimulations.org/results/67864f08167dc18b5b247831/download", + "logs": "https://api.biosimulations.org/logs/67864f08167dc18b5b247831?includeOutput=true", "log_yml": { - "duration": 0.050691, + "duration": 0.061032, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmph4d09iiw/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", + "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpd4gb235k/./Theinmozhi_2018.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -2035,11 +2035,11 @@ }, "pyneuroml": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599a039fa297efdca4d3e7", - "download": "https://api.biosimulations.org/results/67599a039fa297efdca4d3e7/download", - "logs": "https://api.biosimulations.org/logs/67599a039fa297efdca4d3e7?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864f0aba5a3f02b9f2f307", + "download": "https://api.biosimulations.org/results/67864f0aba5a3f02b9f2f307/download", + "logs": "https://api.biosimulations.org/logs/67864f0aba5a3f02b9f2f307?includeOutput=true", "log_yml": { - "duration": 0.061951, + "duration": 0.056221, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -2052,19 +2052,19 @@ }, "pysces": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599a059fa297efdca4d3ec", - "download": "https://api.biosimulations.org/results/67599a059fa297efdca4d3ec/download", - "logs": "https://api.biosimulations.org/logs/67599a059fa297efdca4d3ec?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864f0bba5a3f02b9f2f312", + "download": "https://api.biosimulations.org/results/67864f0bba5a3f02b9f2f312/download", + "logs": "https://api.biosimulations.org/logs/67864f0bba5a3f02b9f2f312?includeOutput=true", "log_yml": { - "duration": 5.470218, + "duration": 5.080667, "exception": null, "output": "libtk8.6.so: cannot open shared object file: No such file or directory\r\n\r\nPySCeS defaults to matplotlib's TKagg backend if not specified in the user configuration file, set \"matplotlib_backend = \" \r\nMatplotlib interface loaded (pysces.plt.m)\r\nPitcon routines available\r\nNLEQ2 routines available\r\nSBML support available\r\nYou are using NumPy (2.1.2) with SciPy (1.14.1)\r\nAssimulo CVode available\r\nRateChar is available\r\nParallel scanner is available\r\n\r\nPySCeS environment\r\n******************\r\npysces.model_dir = /home/FCAM/crbmapi/Pysces/psc\r\npysces.output_dir = /home/FCAM/crbmapi/Pysces\r\n\r\n\r\n***********************************************************************\r\n* Welcome to PySCeS (1.2.2) - Python Simulator for Cellular Systems *\r\n* http://pysces.sourceforge.net *\r\n* Copyright(C) B.G. Olivier, J.M. Rohwer, J.-H.S. Hofmeyr, 2004-2024 *\r\n* Triple-J Group for Molecular Cell Physiology *\r\n* Stellenbosch University, ZA and VU University Amsterdam, NL *\r\n* PySCeS is distributed under the PySCeS (BSD style) licence, see *\r\n* LICENCE.txt (supplied with this release) for details *\r\n* Please cite PySCeS with: doi:10.1093/bioinformatics/bti046 *\r\n***********************************************************************\r\n", "sedDocuments": [ { - "duration": 4.911505, + "duration": 4.614607, "exception": null, "location": "Theinmozhi_2018.sedml", - "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 5 plots:\r\n Theinmozhi_2018.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 120 data sets\r\n Plots (5):\r\n plot_10_task2: 1 curves\r\n plot_6_task2: 1 curves\r\n plot_7_task2: 1 curves\r\n plot_8_task2: 2 curves\r\n plot_9_task2: 1 curves\r\n\r\nExecuting SED-ML file 1: Theinmozhi_2018.sedml ...\r\n Found 1 tasks and 6 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_10_task2`\r\n `plot_6_task2`\r\n `plot_7_task2`\r\n `plot_8_task2`\r\n `plot_9_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...Info: single compartment model: locating \"CP2_DP_CP1\" in default compartment\r\nInfo: single compartment model: locating \"CP1_Diss_PD1_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CD28i_P_CD28a\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_DP_CD28i\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_Bd_PI3K\" in default compartment\r\nInfo: single compartment model: locating \"CD3i_P_CD3a\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_DP_CD3i\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_Bd_ZAP70\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70i_P_ZAP70a1\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70a1_P_ZAP70a2\" in default compartment\r\nInfo: single compartment model: locating \"LATi_P_LATa\" in default compartment\r\nInfo: single compartment model: locating \"LATa_Bd_GADS\" in default compartment\r\nInfo: single compartment model: locating \"GADSa_Bd_SLP76\" in default compartment\r\nInfo: single compartment model: locating \"SLP76i_P_SLC76a\" in default compartment\r\nWriting file: /tmp/tmpa5k73wcn.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpwxesupkw.xml\r\nout: /tmp/tmpa5k73wcn.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmpa5k73wcn.psc loading ..... \r\nParsing file: /tmp/tmpa5k73wcn.psc\r\nWarning: species \"LCKinactive\" (fixed) does not occur in any reaction\r\nWarning: species \"CD3t\" (fixed) does not occur in any reaction\r\nWarning: species \"SLP76t\" (fixed) does not occur in any reaction\r\nWarning: species \"GADSt\" (fixed) does not occur in any reaction\r\nWarning: species \"LATt\" (fixed) does not occur in any reaction\r\nWarning: species \"ZAP70t\" (fixed) does not occur in any reaction\r\nWarning: species \"PI3Kt\" (fixed) does not occur in any reaction\r\nWarning: species \"CD28t\" (fixed) does not occur in any reaction\r\nWarning: species \"CPactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKt\" (fixed) does not occur in any reaction\r\nInfo: \"CD28t\" has been initialised but does not occur in a rate equation\r\nInfo: \"PI3Kt\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LATt\" has been initialised but does not occur in a rate equation\r\nInfo: \"GADSt\" has been initialised but does not occur in a rate equation\r\nInfo: \"SLP76t\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCKinactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"Kdpa_yiya\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_bound\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3z_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD28_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_PI3K_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_ZAP70_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y315\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y93\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y505\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y394\" has been initialised but does not occur in a rate equation\r\nInfo: \"LAT_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_active\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_inactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_switch\" has been initialised but does not occur in a rate equation\r\nInfo: \"ModelValue_0\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 101 points: 0.16897153854370117\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 6 outputs ...\r\n Generating output 1: `plot_6_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `plot_7_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 3: `plot_8_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 4: `plot_9_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 5: `plot_10_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 6: `autogen_report_for_task2` ...", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 5 plots:\r\n Theinmozhi_2018.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 120 data sets\r\n Plots (5):\r\n plot_10_task2: 1 curves\r\n plot_6_task2: 1 curves\r\n plot_7_task2: 1 curves\r\n plot_8_task2: 2 curves\r\n plot_9_task2: 1 curves\r\n\r\nExecuting SED-ML file 1: Theinmozhi_2018.sedml ...\r\n Found 1 tasks and 6 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_10_task2`\r\n `plot_6_task2`\r\n `plot_7_task2`\r\n `plot_8_task2`\r\n `plot_9_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...Info: single compartment model: locating \"CP2_DP_CP1\" in default compartment\r\nInfo: single compartment model: locating \"CP1_Diss_PD1_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CD28i_P_CD28a\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_DP_CD28i\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_Bd_PI3K\" in default compartment\r\nInfo: single compartment model: locating \"CD3i_P_CD3a\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_DP_CD3i\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_Bd_ZAP70\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70i_P_ZAP70a1\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70a1_P_ZAP70a2\" in default compartment\r\nInfo: single compartment model: locating \"LATi_P_LATa\" in default compartment\r\nInfo: single compartment model: locating \"LATa_Bd_GADS\" in default compartment\r\nInfo: single compartment model: locating \"GADSa_Bd_SLP76\" in default compartment\r\nInfo: single compartment model: locating \"SLP76i_P_SLC76a\" in default compartment\r\nWriting file: /tmp/tmpc5k_1u6i.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpkacvl_ti.xml\r\nout: /tmp/tmpc5k_1u6i.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmpc5k_1u6i.psc loading ..... \r\nParsing file: /tmp/tmpc5k_1u6i.psc\r\nWarning: species \"LCKinactive\" (fixed) does not occur in any reaction\r\nWarning: species \"CD3t\" (fixed) does not occur in any reaction\r\nWarning: species \"SLP76t\" (fixed) does not occur in any reaction\r\nWarning: species \"GADSt\" (fixed) does not occur in any reaction\r\nWarning: species \"LATt\" (fixed) does not occur in any reaction\r\nWarning: species \"ZAP70t\" (fixed) does not occur in any reaction\r\nWarning: species \"PI3Kt\" (fixed) does not occur in any reaction\r\nWarning: species \"CD28t\" (fixed) does not occur in any reaction\r\nWarning: species \"CPactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKt\" (fixed) does not occur in any reaction\r\nInfo: \"CD28t\" has been initialised but does not occur in a rate equation\r\nInfo: \"PI3Kt\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LATt\" has been initialised but does not occur in a rate equation\r\nInfo: \"GADSt\" has been initialised but does not occur in a rate equation\r\nInfo: \"SLP76t\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCKinactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"Kdpa_yiya\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_bound\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3z_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD28_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_PI3K_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_ZAP70_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y315\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y93\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y505\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y394\" has been initialised but does not occur in a rate equation\r\nInfo: \"LAT_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_active\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_inactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_switch\" has been initialised but does not occur in a rate equation\r\nInfo: \"ModelValue_0\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 101 points: 0.14174938201904297\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 6 outputs ...\r\n Generating output 1: `plot_6_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `plot_7_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 3: `plot_8_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 4: `plot_9_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 5: `plot_10_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 6: `autogen_report_for_task2` ...", "outputs": [ { "curves": [ @@ -2073,7 +2073,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.32564, + "duration": 0.287712, "exception": null, "id": "plot_6_task2", "output": "", @@ -2087,7 +2087,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.144236, + "duration": 0.122846, "exception": null, "id": "plot_7_task2", "output": "", @@ -2105,7 +2105,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.153901, + "duration": 0.131839, "exception": null, "id": "plot_8_task2", "output": "", @@ -2119,7 +2119,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.128691, + "duration": 0.136811, "exception": null, "id": "plot_9_task2", "output": "", @@ -2133,7 +2133,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.134497, + "duration": 0.116042, "exception": null, "id": "plot_10_task2", "output": "", @@ -2623,7 +2623,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.212811, + "duration": 0.192478, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -2636,10 +2636,10 @@ "tasks": [ { "algorithm": null, - "duration": 3.218214, + "duration": 3.083859, "exception": null, "id": "task2", - "output": "Check SBML support is at action level 2\r\nSBML file is L2V4\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmpuap7ro2k.xml\r\n*******************************************************************\r\n\r\nParameter units ignored for parameters:\r\n['Kdpa_yiya', 'Kdpi_yi', 'Kdpi_yiya', 'Kdpa_ya', 'Kdpa_pi', 'Kpi_i', 'Kpi_ya', 'Kpa_i', 'Kpa_yi', 'Kp_pd1', 'KMp_pd1', 'Ka_shp', 'Kd1_shp', 'Kd2_shp', 'Kdp_cp2', 'Kp_cd28', 'KMp_cd28', 'Kdp_cd28', 'KMdp_cd28', 'Ka_pi3k', 'Kd_pi3k', 'Kp_cd3', 'KMp_cd3', 'Kdp_cd3', 'KMdp_cd3', 'Ka_zap', 'Kd_zap', 'Kp1_zap', 'Kp2_zap', 'Kp_lat', 'Ka_gads', 'Kd_gads', 'Ka_slp', 'Kd_slp', 'Kp_slp', 'perc_SHP2_bound'] \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"LCK_P_LCKyi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCK_P_LCKya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_P_LCKyiya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_P_LCKpi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKya\" in default compartment\r\nInfo: single compartment model: locating \"LCKpi_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"PD1_P_PD1p1_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_P_PD1p2_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"PD1p2_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CP2_Diss_SHP2_PD1p1\" in default compartment\r\nInfo: single compartment model: locating \"CP2_DP_CP1\" in default compartment\r\nInfo: single compartment model: locating \"CP1_Diss_PD1_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CD28i_P_CD28a\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_DP_CD28i\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_Bd_PI3K\" in default compartment\r\nInfo: single compartment model: locating \"CD3i_P_CD3a\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_DP_CD3i\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_Bd_ZAP70\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70i_P_ZAP70a1\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70a1_P_ZAP70a2\" in default compartment\r\nInfo: single compartment model: locating \"LATi_P_LATa\" in default compartment\r\nInfo: single compartment model: locating \"LATa_Bd_GADS\" in default compartment\r\nInfo: single compartment model: locating \"GADSa_Bd_SLP76\" in default compartment\r\nInfo: single compartment model: locating \"SLP76i_P_SLC76a\" in default compartment\r\nWriting file: /tmp/tmpym7tk6hm.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpuap7ro2k.xml\r\nout: /tmp/tmpym7tk6hm.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmpym7tk6hm.psc loading ..... \r\nParsing file: /tmp/tmpym7tk6hm.psc\r\nWarning: species \"LCKinactive\" (fixed) does not occur in any reaction\r\nWarning: species \"CD3t\" (fixed) does not occur in any reaction\r\nWarning: species \"SLP76t\" (fixed) does not occur in any reaction\r\nWarning: species \"GADSt\" (fixed) does not occur in any reaction\r\nWarning: species \"LATt\" (fixed) does not occur in any reaction\r\nWarning: species \"ZAP70t\" (fixed) does not occur in any reaction\r\nWarning: species \"PI3Kt\" (fixed) does not occur in any reaction\r\nWarning: species \"CD28t\" (fixed) does not occur in any reaction\r\nWarning: species \"CPactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKt\" (fixed) does not occur in any reaction\r\nInfo: \"CD28t\" has been initialised but does not occur in a rate equation\r\nInfo: \"PI3Kt\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LATt\" has been initialised but does not occur in a rate equation\r\nInfo: \"GADSt\" has been initialised but does not occur in a rate equation\r\nInfo: \"SLP76t\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCKinactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"Kdpa_yiya\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_bound\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3z_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD28_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_PI3K_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_ZAP70_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y315\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y93\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y505\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y394\" has been initialised but does not occur in a rate equation\r\nInfo: \"LAT_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_active\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_inactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_switch\" has been initialised but does not occur in a rate equation\r\nInfo: \"ModelValue_0\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 101 points: 0.18651652336120605\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmpwxesupkw.xml\r\n*******************************************************************\r\n\r\nParameter units ignored for parameters:\r\n['Kdpa_yiya', 'Kdpi_yi', 'Kdpi_yiya', 'Kdpa_ya', 'Kdpa_pi', 'Kpi_i', 'Kpi_ya', 'Kpa_i', 'Kpa_yi', 'Kp_pd1', 'KMp_pd1', 'Ka_shp', 'Kd1_shp', 'Kd2_shp', 'Kdp_cp2', 'Kp_cd28', 'KMp_cd28', 'Kdp_cd28', 'KMdp_cd28', 'Ka_pi3k', 'Kd_pi3k', 'Kp_cd3', 'KMp_cd3', 'Kdp_cd3', 'KMdp_cd3', 'Ka_zap', 'Kd_zap', 'Kp1_zap', 'Kp2_zap', 'Kp_lat', 'Ka_gads', 'Kd_gads', 'Ka_slp', 'Kd_slp', 'Kp_slp', 'perc_SHP2_bound'] \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"LCK_P_LCKyi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCK_P_LCKya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_P_LCKyiya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_P_LCKpi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKya\" in default compartment\r\nInfo: single compartment model: locating \"LCKpi_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"PD1_P_PD1p1_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_P_PD1p2_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"PD1p2_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CP2_Diss_SHP2_PD1p1\" in default compartment\r\n", + "output": "Check SBML support is at action level 2\r\nSBML file is L2V4\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmp13uc1knj.xml\r\n*******************************************************************\r\n\r\nParameter units ignored for parameters:\r\n['Kdpa_yiya', 'Kdpi_yi', 'Kdpi_yiya', 'Kdpa_ya', 'Kdpa_pi', 'Kpi_i', 'Kpi_ya', 'Kpa_i', 'Kpa_yi', 'Kp_pd1', 'KMp_pd1', 'Ka_shp', 'Kd1_shp', 'Kd2_shp', 'Kdp_cp2', 'Kp_cd28', 'KMp_cd28', 'Kdp_cd28', 'KMdp_cd28', 'Ka_pi3k', 'Kd_pi3k', 'Kp_cd3', 'KMp_cd3', 'Kdp_cd3', 'KMdp_cd3', 'Ka_zap', 'Kd_zap', 'Kp1_zap', 'Kp2_zap', 'Kp_lat', 'Ka_gads', 'Kd_gads', 'Ka_slp', 'Kd_slp', 'Kp_slp', 'perc_SHP2_bound'] \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"LCK_P_LCKyi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCK_P_LCKya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_P_LCKyiya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_P_LCKpi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKya\" in default compartment\r\nInfo: single compartment model: locating \"LCKpi_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"PD1_P_PD1p1_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_P_PD1p2_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"PD1p2_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CP2_Diss_SHP2_PD1p1\" in default compartment\r\nInfo: single compartment model: locating \"CP2_DP_CP1\" in default compartment\r\nInfo: single compartment model: locating \"CP1_Diss_PD1_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CD28i_P_CD28a\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_DP_CD28i\" in default compartment\r\nInfo: single compartment model: locating \"CD28a_Bd_PI3K\" in default compartment\r\nInfo: single compartment model: locating \"CD3i_P_CD3a\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_DP_CD3i\" in default compartment\r\nInfo: single compartment model: locating \"CD3a_Bd_ZAP70\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70i_P_ZAP70a1\" in default compartment\r\nInfo: single compartment model: locating \"ZAP70a1_P_ZAP70a2\" in default compartment\r\nInfo: single compartment model: locating \"LATi_P_LATa\" in default compartment\r\nInfo: single compartment model: locating \"LATa_Bd_GADS\" in default compartment\r\nInfo: single compartment model: locating \"GADSa_Bd_SLP76\" in default compartment\r\nInfo: single compartment model: locating \"SLP76i_P_SLC76a\" in default compartment\r\nWriting file: /tmp/tmp7n41ev4w.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmp13uc1knj.xml\r\nout: /tmp/tmp7n41ev4w.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmp7n41ev4w.psc loading ..... \r\nParsing file: /tmp/tmp7n41ev4w.psc\r\nWarning: species \"LCKinactive\" (fixed) does not occur in any reaction\r\nWarning: species \"CD3t\" (fixed) does not occur in any reaction\r\nWarning: species \"SLP76t\" (fixed) does not occur in any reaction\r\nWarning: species \"GADSt\" (fixed) does not occur in any reaction\r\nWarning: species \"LATt\" (fixed) does not occur in any reaction\r\nWarning: species \"ZAP70t\" (fixed) does not occur in any reaction\r\nWarning: species \"PI3Kt\" (fixed) does not occur in any reaction\r\nWarning: species \"CD28t\" (fixed) does not occur in any reaction\r\nWarning: species \"CPactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKactive\" (fixed) does not occur in any reaction\r\nWarning: species \"LCKt\" (fixed) does not occur in any reaction\r\nInfo: \"CD28t\" has been initialised but does not occur in a rate equation\r\nInfo: \"PI3Kt\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LATt\" has been initialised but does not occur in a rate equation\r\nInfo: \"GADSt\" has been initialised but does not occur in a rate equation\r\nInfo: \"SLP76t\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3t\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCKinactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"Kdpa_yiya\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_bound\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD3z_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"CD28_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_SHP2_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_PI3K_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_ZAP70_free\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y315\" has been initialised but does not occur in a rate equation\r\nInfo: \"ZAP70_phos_Y93\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y505\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_phos_Y394\" has been initialised but does not occur in a rate equation\r\nInfo: \"LAT_phosphorylated\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_active\" has been initialised but does not occur in a rate equation\r\nInfo: \"perc_LCK_inactive\" has been initialised but does not occur in a rate equation\r\nInfo: \"LCK_switch\" has been initialised but does not occur in a rate equation\r\nInfo: \"ModelValue_0\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 101 points: 0.16927266120910645\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmpkacvl_ti.xml\r\n*******************************************************************\r\n\r\nParameter units ignored for parameters:\r\n['Kdpa_yiya', 'Kdpi_yi', 'Kdpi_yiya', 'Kdpa_ya', 'Kdpa_pi', 'Kpi_i', 'Kpi_ya', 'Kpa_i', 'Kpa_yi', 'Kp_pd1', 'KMp_pd1', 'Ka_shp', 'Kd1_shp', 'Kd2_shp', 'Kdp_cp2', 'Kp_cd28', 'KMp_cd28', 'Kdp_cd28', 'KMdp_cd28', 'Ka_pi3k', 'Kd_pi3k', 'Kp_cd3', 'KMp_cd3', 'Kdp_cd3', 'KMdp_cd3', 'Ka_zap', 'Kd_zap', 'Kp1_zap', 'Kp2_zap', 'Kp_lat', 'Ka_gads', 'Kd_gads', 'Ka_slp', 'Kd_slp', 'Kp_slp', 'perc_SHP2_bound'] \r\n\r\n*******************************************************************\r\n\r\nInfo: single compartment model: locating \"LCK_P_LCKyi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCK_P_LCKya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_P_LCKyiya_act\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_P_LCKpi_inh\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"LCKya_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyi_DP_LCKi\" in default compartment\r\nInfo: single compartment model: locating \"LCKyiya_DP_LCKya\" in default compartment\r\nInfo: single compartment model: locating \"LCKpi_DP_LCKyi\" in default compartment\r\nInfo: single compartment model: locating \"PD1_P_PD1p1_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_P_PD1p2_act\" in default compartment\r\nInfo: single compartment model: locating \"PD1p1_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"PD1p2_Bd_SHP2\" in default compartment\r\nInfo: single compartment model: locating \"CP2_Diss_SHP2_PD1p1\" in default compartment\r\n", "simulatorDetails": null, "skipReason": null, "status": "SUCCEEDED" @@ -2653,11 +2653,11 @@ }, "rbapy": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599a079fa297efdca4d3f3", - "download": "https://api.biosimulations.org/results/67599a079fa297efdca4d3f3/download", - "logs": "https://api.biosimulations.org/logs/67599a079fa297efdca4d3f3?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864f0d1f52f47f628b58ae", + "download": "https://api.biosimulations.org/results/67864f0d1f52f47f628b58ae/download", + "logs": "https://api.biosimulations.org/logs/67864f0d1f52f47f628b58ae?includeOutput=true", "log_yml": { - "duration": 0.269646, + "duration": 0.224946, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Theinmozhi_2018.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -2670,11 +2670,11 @@ }, "smoldyn": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599a09c3054f763d585a0e", - "download": "https://api.biosimulations.org/results/67599a09c3054f763d585a0e/download", - "logs": "https://api.biosimulations.org/logs/67599a09c3054f763d585a0e?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864f0fba5a3f02b9f2f321", + "download": "https://api.biosimulations.org/results/67864f0fba5a3f02b9f2f321/download", + "logs": "https://api.biosimulations.org/logs/67864f0fba5a3f02b9f2f321?includeOutput=true", "log_yml": { - "duration": 0.059965, + "duration": 0.058563, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -2687,16 +2687,16 @@ }, "tellurium": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599a0b707aa64104620de0", - "download": "https://api.biosimulations.org/results/67599a0b707aa64104620de0/download", - "logs": "https://api.biosimulations.org/logs/67599a0b707aa64104620de0?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864f11167dc18b5b24785d", + "download": "https://api.biosimulations.org/results/67864f11167dc18b5b24785d/download", + "logs": "https://api.biosimulations.org/logs/67864f11167dc18b5b24785d?includeOutput=true", "log_yml": { - "duration": 4.095218, + "duration": 3.8254, "exception": null, "output": "", "sedDocuments": [ { - "duration": 3.452619, + "duration": 3.229124, "exception": null, "location": "Theinmozhi_2018.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 5 plots:\r\n Theinmozhi_2018.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 120 data sets\r\n Plots (5):\r\n plot_10_task2: 1 curves\r\n plot_6_task2: 1 curves\r\n plot_7_task2: 1 curves\r\n plot_8_task2: 2 curves\r\n plot_9_task2: 1 curves\r\n\r\nExecuting SED-ML file 1: Theinmozhi_2018.sedml ...\r\n Found 2 tasks and 6 outputs:\r\n Tasks:\r\n `task1`\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_10_task2`\r\n `plot_6_task2`\r\n `plot_7_task2`\r\n `plot_8_task2`\r\n `plot_9_task2`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 6 outputs ...\r\n Generating output 1: `plot_6_task2` ... \u001b[36mqueued\u001b[0m\r\n Generating output 2: `plot_7_task2` ... \u001b[36mqueued\u001b[0m\r\n Generating output 3: `plot_8_task2` ... \u001b[36mqueued\u001b[0m\r\n Generating output 4: `plot_9_task2` ... \u001b[36mqueued\u001b[0m\r\n Generating output 5: `plot_10_task2` ... \u001b[36mqueued\u001b[0m\r\n Generating output 6: `autogen_report_for_task2` ... \u001b[36mqueued\u001b[0m\r\n Executing task 2: `task2`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 6 outputs ...\r\n Generating output 1: `plot_6_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `plot_7_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 3: `plot_8_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 4: `plot_9_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 5: `plot_10_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 6: `autogen_report_for_task2` ...", @@ -2708,7 +2708,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.145862, + "duration": 0.12586, "exception": null, "id": "plot_6_task2", "output": "", @@ -2722,7 +2722,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.156146, + "duration": 0.13023, "exception": null, "id": "plot_7_task2", "output": "", @@ -2740,7 +2740,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.163612, + "duration": 0.138288, "exception": null, "id": "plot_8_task2", "output": "", @@ -2754,7 +2754,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.136252, + "duration": 0.175926, "exception": null, "id": "plot_9_task2", "output": "", @@ -2768,7 +2768,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.143398, + "duration": 0.12089, "exception": null, "id": "plot_10_task2", "output": "", @@ -3258,7 +3258,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.221477, + "duration": 0.224598, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -3271,7 +3271,7 @@ "tasks": [ { "algorithm": "KISAO_0000019", - "duration": 0.386098, + "duration": 0.317836, "exception": null, "id": "task1", "output": "", @@ -3338,7 +3338,7 @@ }, { "algorithm": null, - "duration": 0.335437, + "duration": 0.292123, "exception": null, "id": "task2", "output": "", @@ -3355,11 +3355,11 @@ }, "vcell": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599a0e9fa297efdca4d411", - "download": "https://api.biosimulations.org/results/67599a0e9fa297efdca4d411/download", - "logs": "https://api.biosimulations.org/logs/67599a0e9fa297efdca4d411?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864f141f52f47f628b58cf", + "download": "https://api.biosimulations.org/results/67864f141f52f47f628b58cf/download", + "logs": "https://api.biosimulations.org/logs/67864f141f52f47f628b58cf?includeOutput=true", "log_yml": { - "duration": 15, + "duration": 14, "exception": null, "output": "Processing Theinmozhi_2018.sedml. Done", "sedDocuments": [ @@ -3966,11 +3966,11 @@ }, "xpp": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599a109fa297efdca4d41c", - "download": "https://api.biosimulations.org/results/67599a109fa297efdca4d41c/download", - "logs": "https://api.biosimulations.org/logs/67599a109fa297efdca4d41c?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864f16ba5a3f02b9f2f34d", + "download": "https://api.biosimulations.org/results/67864f16ba5a3f02b9f2f34d/download", + "logs": "https://api.biosimulations.org/logs/67864f16ba5a3f02b9f2f34d?includeOutput=true", "log_yml": { - "duration": 0.064887, + "duration": 0.081655, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" diff --git a/BioModels/BIOMD0000001077/Adlung2021 _model_jakstat_pa.omex b/BioModels/BIOMD0000001077/Adlung2021 _model_jakstat_pa.omex new file mode 100644 index 0000000000000000000000000000000000000000..37fd7c678c00977fa9ae865206c8e5fe80cd23c1 GIT binary patch literal 9542 zcma)iV{j%~ux)H>V%whBwmGqFOl+GIJNaT8UpR3xv7L!+=gxWW);Z_hdbjS~`$t!= z>b0t?Yya5Y)k?D95EvjJATS^!`iwgFNm-G<|9GWfARq{Tteug)mARRVE2F2KZAlWp z;s7&BmO>&8v9+1#qXEY}2joeO%(Fs8N`+T98cCmq_ZDBFdn3C`r2oaQ*Y20_a z!V_j$o@ui8qPLk)-^^9@wFnaPaHHi6595IWTa1EE{qis~1ln!TVB7g)v)>ylapQi0 z>p^xi50X{y@@K|&IX!OzFSht(XHdxBhv~a?)a(e>@81NJFiEI~CxlVqUWoTxA0MZbu!LI5 zHH~+sXcy;-U}=mEzj^d>4p^1T%p{P@#}anTt{Oji znNx2um8Ox&w;d=8y1y|c73h0&>ZsVmA&T$o<6iXRK_?JiI2H_hS{maD}I@WYu*zA+O0#>JV`2_(;LbTDuR+0WCExwEyh| z4&S7(w7{eA2iOP|aI@^h4yZgJtA zQp!YN`2HD^-ViMIE3826I9Dg1V8)vxH*a_DlP>51sUd zuoCqv8hthGnP{I|M)pJ_)7UOKx)xev!_7LgZo~0yxL1v>pil>n->TUu6PeDK{)k-V zQhVem*507dJ6Yx|o_&7N`8^)m6mmjh%4{YS zy(b%2LXCTbg3O!zV(n7&s?CUzKi^Th0!xPDeYY+iec&nN{fe5sZOBeN-GS=TS`~So z2W2`aEy#2lIdX$gsTanv?ztI z$cGK0dr{L%+(nl?U9sY?2Rq+DS7X<$47HE*c8v+PC~_9Wu%b?IVRbo>#)c>L(tf32e0BVWqpFQhC_sPTMOwY`Io4@~A!E zYOFIUAo6J=TFCef1a)i#*n-}L6}N(OxmIJnaaQh{#^n`lN<4u}D8x#&_T-gEb*5gm zGSujv@~5t3Jhs&|JUerQ?_qv>dlt{#c-y-RAIX_3!?}Id{3??t9`lQ1e8qUOxDt&D zL6x@Lg8!NEZJ!qBy$zRqcEmRKwZ338S`9BU96b)g>$ijpdHSG zjIOu=(+|DF-2aoMcz*B}{Uq^t!)gbX|CCElZC(OIm>v?=zFSBk&-w{eupHaTT^JyK z;6Xif%dMnvL0*=Y)Y+Q!x|lTUEj>C^3}LQvX+6bgaXcxgDDCkaB}_dm)Ye#(^suCqKw6_#?!>}(D7 zKBF#7Nw<(2Z?W9hdknk1Bu1GR4FXOS=hjzmj}hr7BGSEjoNM@=#DhaG&V4*Or3Lhq zrC%;{HQy6kHDHHWyvfhARUKO^W ze^j_b;JT>(rE;24%4J{1UzCV2+bAFF=+hJVy&HFT_>$y2Bi1wlcNS(ijJZ}*^o>iP zn13Jshf{Q zp5{)1dk8d6u?ZjUj%Nz=U%X)uveg;ofAgeW#Q0>Q{>euw26pzNl=yF<1r$N6I7@%k zgnvRJ^4KMtfHeQkM=_IZbqj+$cs@abi!H?qk$gS{oKq_#*cWd1axCj{&jI zSr0)%x?MNfV-+LeDnt7=#Ysu9asSIg(&xaJV9J$~t&{U%VQqfOH$>nY&=Jk&x2y@f zQZnAbOMLEWJ^I7lDPtM9+oiv_@iZPcdveigu#%Anpg zPF&tVQ`QS^3#elRG#VG0f;B3Pm)L?lbxoXq`+XstO@3onLy-d22>j-Y&{Ji^a9Bwc z?7tYz1=}kOH?sxlf#cI0uuvE^M;kF`mcQ83UHvhXW&E>316kKt+lJ)Qr*Ne#SbJy;xbWTeCD$R1>BLiUz|Bd;nZLy*K01dx`>mkHFUp-+6p>Z$7R-u_&o?;+!_u_na35M?xca#TZ27l z$Ux6HVXzo69C}q%E=14obc%kHp@5f70nx)8)glt*Qbq|P8yg~m`SoE((TXioN^Z3Y z4Y{f8%0d$dgT+d8C$Pv1Lm;|)quMmXY^(oB`IiD-1)A)3TbkPRko|4l2pVKj=fO-eV+HR4IxB4NhaQWX>S~-anUN@ zd<|sdIs|*Yi6f590IPX)&N=BaC0UKzD*{M187M3HDvFwS1f0;b6eQ!dYm;Bq?}f_7;rNY2?70Us z2imy@*nJP)`Y!P{t!2&fn~&quF2EZ7RtpCJ$gBG?i@o#$}RH zh0|bL%Jz9bu!}1osWSgc3wq46ips_>HOyy#yeyf;;O3U=6Vip-{8CKg?EE7raM7lu zYq&(4Nj-2VlSZ^!`^G*ttOSl;i*-Je;*!@=tD-lE;x8EPy zX6`>>FMsmd4BH2(ieBS9^1pOWfd3FoZ2l%hRs91qSpN;vX8Z#`{%10+(9OI9y~C>b zarSzLhWeAllJOQk+j`UFVLReEzZW153|+>8PFN0u@3kBB6@pIux}UNe8u&6oysMoa ziKf+LHV>As+-`1hno{NfSHpj92Ko#sOGk|Br4}`ZWUtRIftpB<){q6~?RkQMsypZw?WL_v8;8?* zAJ13!Vy}atHUoONafdp2g6*4Sz`V~jU~XtU0H5|WEYE`Jv{~@**#PL5v%9a#MZO%~!R1Lnr5#pBKM*Q!N4p90a@zExCO>j(h!{ zXdne7`1|!$qv*lE4|5`hM`yk7LuRi;(@ouJ2%MmL5I6%oxNhyvpW{$#Y?Hn3vnR*k z+DqQQ`q5 zqq=d;{R{_vG~2gbHgsB{sgQ+C+EYuiWLg^6;E^dB1E_>zX-ywl|j zVpGq%as-!wzk2!h;3L1+2%c$<^M6VjhBMV99z>x#m6Gr9D(}8L>>jK==bc7e_-n;K zlpE#Rf5=Lny@ljDbx1%z;bVLUU$a z-(|O1nNY}l_8%Ot46i+u`i!6oat0fM1~~}g3Ge^hg@emTl7Vl=h$!d_mYiHxFIx~R zA9c(HV(-NF-c}pFFS73kg{0a(t;w=G?9~(gc{lYpPixU@ouL7ri77Y+BrhF0bFREG zWurySZw*9(9|ulm42Ol}))9CGiCNCo^+`XxOWR@l@jRFmdid5S>&09_tlOxUQj1Ag z__2ZA?cM4f0d+AicQ#lDWEzj;)mG{DXrO(_VM! 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    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with AMICI.

    SBML and SED-ML are compatible with AMICI.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element

    ERROR TYPE:
    CombineArchiveExecutionError
    |
    ❌ FAILERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element

    ERROR TYPE:
    CombineArchiveExecutionError
    | plot | plot | -|
    BioNetGenhttps://docs.biosimulators.org/Biosimulators_BioNetGen/
    |
    ⚠ XFAILEXPECTED FAIL

    Only BNGL, SED-ML are compatible with BioNetGen.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    BoolNethttps://docs.biosimulators.org/Biosimulators_BoolNet/
    |
    ⚠ XFAILEXPECTED FAIL

    Only SBML-qual, SED-ML are compatible with BoolNet.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    Brian 2https://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with Brian 2.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    CBMPyhttps://docs.biosimulators.org/Biosimulators_CBMPy/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with CBMPy.

    SBML and SED-ML are compatible with CBMPy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    COBRApyhttps://docs.biosimulators.org/Biosimulators_COBRApy/
    Only allows steady state simulations
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COBRApy.

    SBML and SED-ML are compatible with COBRApy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    COPASIhttps://docs.biosimulators.org/Biosimulators_COPASI/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COPASI.

    SBML and SED-ML are compatible with COPASI.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | -|
    GillesPy2https://docs.biosimulators.org/Biosimulators_GillesPy2/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with GillesPy2.

    SBML and SED-ML are compatible with GillesPy2.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    GINsimhttps://docs.biosimulators.org/Biosimulators_GINsim/
    |
    ⚠ XFAILEXPECTED FAIL

    Only SBML-qual, SED-ML are compatible with GINsim.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    LibSBMLSimhttps://docs.biosimulators.org/Biosimulators_LibSBMLSim/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with LibSBMLSim.

    SBML and SED-ML are compatible with LibSBMLSim.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    MASSpyhttps://docs.biosimulators.org/Biosimulators_MASSpy/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with MASSpy.

    SBML and SED-ML are compatible with MASSpy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    Could not load MassModel 'Adlung2021___Cell_to_cell_variability_in_JAK2_STAT5_pathway'

    target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] cannot be changed by XML manipulation, as the target is not an attribute of a model element

    ERROR TYPE:
    CombineArchiveExecutionError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | plot | | -|
    NetPyNEhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with NetPyNE.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    NEURONhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with NEURON.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    OpenCORhttps://docs.biosimulators.org/Biosimulators_OpenCOR/
    |
    ⚠ XFAILEXPECTED FAIL

    Only CellML, SED-ML are compatible with OpenCOR.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    pyNeuroMLhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with pyNeuroML.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | -|
    PySCeShttps://docs.biosimulators.org/Biosimulators_PySCeS/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with PySCeS.

    SBML and SED-ML are compatible with PySCeS.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | -|
    RBApyhttps://docs.biosimulators.org/Biosimulators_RBApy/
    |
    ⚠ XFAILEXPECTED FAIL

    Only RBApy, SED-ML are compatible with RBApy.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | -|
    Smoldynhttps://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api
    |
    ⚠ XFAILEXPECTED FAIL

    Only Smoldyn, SED-ML are compatible with Smoldyn.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    Error unknown. The log.yml containing error information was not found.

    | | | -|
    Telluriumhttps://docs.biosimulators.org/Biosimulators_tellurium/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with Tellurium.

    SBML and SED-ML are compatible with Tellurium.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | -|
    VCellhttps://github.com/virtualcell/vcell
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with VCell.

    SBML, SED-ML and BNGL are compatible with VCell.
    |
    ✅ PASSview
    download
    logs

    |
    ❌ FAILERROR MESSAGE:
    Runtime Exception

    | plot | | -|
    XPPhttps://docs.biosimulators.org/Biosimulators_XPP/
    |
    ⚠ XFAILEXPECTED FAIL

    Only XPP, SED-ML are compatible with XPP.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | \ No newline at end of file +|
    AMICIhttps://docs.biosimulators.org/Biosimulators_AMICI/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with AMICI.

    SBML and SED-ML are compatible with AMICI.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element

    ERROR TYPE:
    CombineArchiveExecutionError
    |
    ❌ FAILERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element

    ERROR TYPE:
    CombineArchiveExecutionError
    | plot | plot | +|
    BioNetGenhttps://docs.biosimulators.org/Biosimulators_BioNetGen/
    |
    ⚠ XFAILEXPECTED FAIL

    Only BNGL, SED-ML are compatible with BioNetGen.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    BoolNethttps://docs.biosimulators.org/Biosimulators_BoolNet/
    |
    ⚠ XFAILEXPECTED FAIL

    Only SBML-qual, SED-ML are compatible with BoolNet.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    Brian 2https://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with Brian 2.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    CBMPyhttps://docs.biosimulators.org/Biosimulators_CBMPy/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with CBMPy.

    SBML and SED-ML are compatible with CBMPy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    COBRApyhttps://docs.biosimulators.org/Biosimulators_COBRApy/
    Only allows steady state simulations
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COBRApy.

    SBML and SED-ML are compatible with COBRApy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    COPASIhttps://docs.biosimulators.org/Biosimulators_COPASI/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with COPASI.

    SBML and SED-ML are compatible with COPASI.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | +|
    GillesPy2https://docs.biosimulators.org/Biosimulators_GillesPy2/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with GillesPy2.

    SBML and SED-ML are compatible with GillesPy2.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    GINsimhttps://docs.biosimulators.org/Biosimulators_GINsim/
    |
    ⚠ XFAILEXPECTED FAIL

    Only SBML-qual, SED-ML are compatible with GINsim.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    LibSBMLSimhttps://docs.biosimulators.org/Biosimulators_LibSBMLSim/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with LibSBMLSim.

    SBML and SED-ML are compatible with LibSBMLSim.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    MASSpyhttps://docs.biosimulators.org/Biosimulators_MASSpy/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with MASSpy.

    SBML and SED-ML are compatible with MASSpy.
    |
    ❌ FAILview
    download
    logs

    ERROR MESSAGE:
    The COMBINE/OMEX did not execute successfully:

    The SED document did not execute successfully:

    Could not load MassModel 'Adlung2021___Cell_to_cell_variability_in_JAK2_STAT5_pathway'

    target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] cannot be changed by XML manipulation, as the target is not an attribute of a model element

    ERROR TYPE:
    CombineArchiveExecutionError
    |
    ❌ FAILERROR MESSAGE:
    `/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | plot | | +|
    NetPyNEhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with NetPyNE.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    NEURONhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with NEURON.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    OpenCORhttps://docs.biosimulators.org/Biosimulators_OpenCOR/
    |
    ⚠ XFAILEXPECTED FAIL

    Only CellML, SED-ML are compatible with OpenCOR.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    pyNeuroMLhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
    |
    ⚠ XFAILEXPECTED FAIL

    Only NeuroML, SED-ML are compatible with pyNeuroML.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | +|
    PySCeShttps://docs.biosimulators.org/Biosimulators_PySCeS/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with PySCeS.

    SBML and SED-ML are compatible with PySCeS.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | +|
    RBApyhttps://docs.biosimulators.org/Biosimulators_RBApy/
    |
    ⚠ XFAILEXPECTED FAIL

    Only RBApy, SED-ML are compatible with RBApy.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    `/root/archive.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    `/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.
    - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.
    - Simulation `sim1` is invalid.
    - Algorithm has an invalid KiSAO id `KISAO_0000694`.

    ERROR TYPE:
    ValueError
    | | | +|
    Smoldynhttps://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api
    |
    ⚠ XFAILEXPECTED FAIL

    Only Smoldyn, SED-ML are compatible with Smoldyn.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    Error unknown. The log.yml containing error information was not found.

    | | | +|
    Telluriumhttps://docs.biosimulators.org/Biosimulators_tellurium/
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with Tellurium.

    SBML and SED-ML are compatible with Tellurium.
    |
    ✅ PASSview
    download
    logs

    | ✅ PASS | plot | plot | +|
    VCellhttps://github.com/virtualcell/vcell
    |
    ❓ UNSUREThe file extensions ('xml', 'sedml') suggest the input file types may not be compatibe with VCell.

    BNGL, SBML and SED-ML are compatible with VCell.
    |
    ✅ PASSview
    download
    logs

    |
    ❌ FAILERROR MESSAGE:
    Runtime Exception

    | plot | | +|
    XPPhttps://docs.biosimulators.org/Biosimulators_XPP/
    |
    ⚠ XFAILEXPECTED FAIL

    Only XPP, SED-ML are compatible with XPP.
    |
    ⚠ XFAILEXPECTED FAIL

    view
    download
    logs

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    |
    ⚠ XFAILEXPECTED FAIL

    ERROR MESSAGE:
    No module named 'libsbml'

    ERROR TYPE:
    ModuleNotFoundError
    | | | \ No newline at end of file diff --git a/BioModels/BIOMD0000001077/tests/results_local.json b/BioModels/BIOMD0000001077/tests/results_local.json index bf4877d0..8dfc86b6 100644 --- a/BioModels/BIOMD0000001077/tests/results_local.json +++ b/BioModels/BIOMD0000001077/tests/results_local.json @@ -2,7 +2,7 @@ "amici": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/amici' returned non-zero exit status 1", "log_yml": { - "duration": 17.785899, + "duration": 21.548877, "exception": { "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element", "type": "CombineArchiveExecutionError" @@ -10,7 +10,7 @@ "output": "", "sedDocuments": [ { - "duration": 17.28622, + "duration": 21.040382, "exception": { "message": "The SED document did not execute successfully:\n\n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element", "type": "SedmlExecutionError" @@ -29,7 +29,7 @@ "status": "SKIPPED" } ], - "duration": 0.148086, + "duration": 0.223657, "exception": null, "id": "plot_2_task2", "output": "", @@ -323,7 +323,7 @@ "status": "SKIPPED" } ], - "duration": 0.048225, + "duration": 0.073195, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -336,7 +336,7 @@ "tasks": [ { "algorithm": "KISAO_0000496", - "duration": 16.310881, + "duration": 19.998005, "exception": null, "id": "task1", "output": "", @@ -359,7 +359,7 @@ }, { "algorithm": null, - "duration": 0.037232, + "duration": 0.046482, "exception": { "message": "target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element", "type": "ValueError" @@ -381,12 +381,12 @@ "brian2": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/brian2' returned non-zero exit status 1", "log_yml": { - "duration": 0.052248, + "duration": 0.051667, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "WARNING /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp_m18o8nr/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n [py.warnings]\r\npyNeuroML >>> WARNING - /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp_m18o8nr/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n\r\n", + "output": "WARNING /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpwu2nnbfd/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n [py.warnings]\r\npyNeuroML >>> WARNING - /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpwu2nnbfd/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -396,12 +396,12 @@ "bionetgen": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/bionetgen' returned non-zero exit status 1", "log_yml": { - "duration": 0.137988, + "duration": 0.155502, "exception": { "message": "`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpks79islx/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpiq_jwkh0/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -411,12 +411,12 @@ "boolnet": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/boolnet' returned non-zero exit status 1", "log_yml": { - "duration": 0.159315, + "duration": 0.178601, "exception": { "message": "`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmplh13wniy/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp5cmdjghu/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -426,12 +426,12 @@ "cbmpy": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/cbmpy' returned non-zero exit status 1", "log_yml": { - "duration": 0.26858, + "duration": 0.274251, "exception": { "message": "`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "\r\nINFO: No xlwt module available, Excel spreadsheet creation disabled\r\n\r\n\r\n\r\nNo module named 'cplex'\r\n\r\n\r\n\r\nCPLEX not available\r\n\r\n*****\r\nUsing GLPK\r\n*****\r\n\r\n\r\nINFO: No xlrd module available, Excel spreadsheet reading disabled\r\n\r\nCBMPy environment\r\n******************\r\nRevision: r689\r\n\r\n\r\n***********************************************************************\r\n* Welcome to CBMPy (0.7.25) - PySCeS Constraint Based Modelling *\r\n* http://cbmpy.sourceforge.net *\r\n* Copyright(C) Brett G. Olivier 2014 - 2019 *\r\n* Dept. of Systems Bioinformatics *\r\n* Vrije Universiteit Amsterdam, Amsterdam, The Netherlands *\r\n* CBMPy is developed as part of the BeBasic MetaToolKit Project *\r\n* Distributed under the GNU GPL v 3.0 licence, see *\r\n* LICENCE (supplied with this release) for details *\r\n***********************************************************************\r\n\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp22wzcvia/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "\r\nINFO: No xlwt module available, Excel spreadsheet creation disabled\r\n\r\n\r\n\r\nNo module named 'cplex'\r\n\r\n\r\n\r\nCPLEX not available\r\n\r\n*****\r\nUsing GLPK\r\n*****\r\n\r\n\r\nINFO: No xlrd module available, Excel spreadsheet reading disabled\r\n\r\nCBMPy environment\r\n******************\r\nRevision: r689\r\n\r\n\r\n***********************************************************************\r\n* Welcome to CBMPy (0.7.25) - PySCeS Constraint Based Modelling *\r\n* http://cbmpy.sourceforge.net *\r\n* Copyright(C) Brett G. Olivier 2014 - 2019 *\r\n* Dept. of Systems Bioinformatics *\r\n* Vrije Universiteit Amsterdam, Amsterdam, The Netherlands *\r\n* CBMPy is developed as part of the BeBasic MetaToolKit Project *\r\n* Distributed under the GNU GPL v 3.0 licence, see *\r\n* LICENCE (supplied with this release) for details *\r\n***********************************************************************\r\n\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp7l9td1vb/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -441,12 +441,12 @@ "cobrapy": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/cobrapy' returned non-zero exit status 1", "log_yml": { - "duration": 0.147205, + "duration": 0.166562, "exception": { "message": "`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpiz5mg1kj/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp87ucbcfl/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -456,12 +456,12 @@ "copasi": { "exception_message": "", "log_yml": { - "duration": 2.022621, + "duration": 1.737231, "exception": null, - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpa2anhv2z/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpa2anhv2z/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp4763fgjw/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp4763fgjw/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [ { - "duration": 1.368904, + "duration": 1.332992, "exception": null, "location": "Adlung2021 _model_jakstat_pa.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 1 plots:\r\n Adlung2021 _model_jakstat_pa.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 71 data sets\r\n Plots (1):\r\n plot_2_task2: 2 curves\r\n\r\nExecuting SED-ML file 1: Adlung2021 _model_jakstat_pa.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_2_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `plot_2_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_report_for_task2` ...", @@ -477,7 +477,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.476091, + "duration": 0.504846, "exception": null, "id": "plot_2_task2", "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", @@ -771,7 +771,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.230617, + "duration": 0.262514, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -784,10 +784,10 @@ "tasks": [ { "algorithm": null, - "duration": 0.249847, + "duration": 0.313744, "exception": null, "id": "task2", - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmpa2anhv2z/tmphf0estil.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'LSODA/LSODAR hybrid method' (KISAO_0000560) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmpa2anhv2z/tmpwdz5sddy.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmp4763fgjw/tmpgu59en80.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'LSODA/LSODAR hybrid method' (KISAO_0000560) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmp4763fgjw/tmp3dpdnryb.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "simulatorDetails": null, "skipReason": null, "status": "SUCCEEDED" @@ -803,12 +803,12 @@ "gillespy2": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/gillespy2' returned non-zero exit status 1", "log_yml": { - "duration": 0.126215, + "duration": 0.156355, "exception": { "message": "`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmppneo74a6/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpt31q_jzr/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -818,12 +818,12 @@ "ginsim": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/ginsim' returned non-zero exit status 1", "log_yml": { - "duration": 0.198952, + "duration": 0.15569, "exception": { "message": "`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp02h0mra6/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpfutqaca_/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -833,12 +833,12 @@ "libsbmlsim": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/libsbmlsim' returned non-zero exit status 1", "log_yml": { - "duration": 0.133337, + "duration": 0.191633, "exception": { "message": "`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpd_i8q2kk/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpx2ir8bdn/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -848,12 +848,12 @@ "masspy": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/masspy' returned non-zero exit status 1", "log_yml": { - "duration": 0.147529, + "duration": 0.244506, "exception": { "message": "`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mSedmlFeatureNotSupportedWarning\u001b[0m: \u001b[33m`/tmp/tmpj1b6_q1e/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mSedmlFeatureNotSupportedWarning\u001b[0m: \u001b[33m`/tmp/tmpo4db4a2w/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 \u001b[1;31mBioSimulatorsWarning\u001b[0m: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Task `task2` has warnings.\r\n - Changes has warnings.\r\n - Change 1 has warnings.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` has warnings.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` has warnings.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` has warnings.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` has warnings.\r\n - Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` has warnings.\r\n - Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` has warnings.\r\n - Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` has warnings.\r\n - Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` has warnings.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` has warnings.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` has warnings.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` has warnings.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` has warnings.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` has warnings.\r\n - Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` has warnings.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` has warnings.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` has warnings.\r\n - Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` has warnings.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` has warnings.\r\n - Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` has warnings.\r\n - Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` has warnings.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` has warnings.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` has warnings.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` has warnings.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` has warnings.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` has warnings.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` has warnings.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` has warnings.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` has warnings.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` has warnings.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` has warnings.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` has warnings.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` has warnings.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` has warnings.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` has warnings.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` has warnings.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` has warnings.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` has warnings.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` has warnings.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` has warnings.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` has warnings.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` has warnings.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` has warnings.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` has warnings.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -863,7 +863,7 @@ "netpyne": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/netpyne' returned non-zero exit status 1", "log_yml": { - "duration": 0.047935, + "duration": 0.059109, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -878,12 +878,12 @@ "neuron": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/neuron' returned non-zero exit status 1", "log_yml": { - "duration": 0.078667, + "duration": 0.070425, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpo50398u3/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpmr8xigoq/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -893,12 +893,12 @@ "opencor": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/opencor' returned non-zero exit status 1", "log_yml": { - "duration": 0.059243, + "duration": 0.069249, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp6cnr7usi/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", + "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp3441tg_n/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -908,12 +908,12 @@ "pyneuroml": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/pyneuroml' returned non-zero exit status 1", "log_yml": { - "duration": 0.062084, + "duration": 0.055369, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpdc7w6h6b/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpe7esdvd2/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -923,15 +923,15 @@ "pysces": { "exception_message": "", "log_yml": { - "duration": 1.887471, + "duration": 2.14298, "exception": null, - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp0yy6362g/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp0yy6362g/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp4l7x1lu0/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmp4l7x1lu0/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [ { - "duration": 1.366739, + "duration": 1.659067, "exception": null, "location": "Adlung2021 _model_jakstat_pa.sedml", - "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 1 plots:\r\n Adlung2021 _model_jakstat_pa.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 71 data sets\r\n Plots (1):\r\n plot_2_task2: 2 curves\r\n\r\nExecuting SED-ML file 1: Adlung2021 _model_jakstat_pa.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_2_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V4\r\nInfo: multiple compartments defined but reaction v1_v_0 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v2_v_1 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v3_v_2 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v4_v_3 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v5_v_4 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v6_v_5 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v7_v_6 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v8_v_7 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v9_v_8 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v12_v_11 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v13_v_12 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v14_v_13 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v15_v_14 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v16_v_15 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v17_v_16 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v18_v_17 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v19_v_18 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v20_v_19 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v21_v_20 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v22_v_21 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v23_v_22 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v24_v_23 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v25_v_24 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v26_v_25 is not located in any of them.\r\nWriting file: /tmp/tmpxfkiprz9.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmphekv5vll.xml\r\nout: /tmp/tmpxfkiprz9.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmpxfkiprz9.psc loading ..... \r\nParsing file: /tmp/tmpxfkiprz9.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"epo_level\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_EpoRJAK2\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_SHP1\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"Total_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"measuralbe_pSTAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"_pSTAT5_Total_STAT5\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 301 points: 0.0694129467010498\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\nInfo: multiple compartments defined but reaction v1_v_0 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v2_v_1 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v3_v_2 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v4_v_3 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v5_v_4 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v6_v_5 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v7_v_6 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v8_v_7 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v9_v_8 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v12_v_11 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v13_v_12 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v14_v_13 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v15_v_14 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v16_v_15 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v17_v_16 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v18_v_17 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v19_v_18 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v20_v_19 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v21_v_20 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v22_v_21 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v23_v_22 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v24_v_23 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v25_v_24 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v26_v_25 is not located in any of them.\r\nWriting file: /tmp/tmpg_9gc_pa.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmp5v3c22wm.xml\r\nout: /tmp/tmpg_9gc_pa.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmpg_9gc_pa.psc loading ..... \r\nParsing file: /tmp/tmpg_9gc_pa.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"epo_level\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_EpoRJAK2\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_SHP1\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"Total_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"measuralbe_pSTAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"_pSTAT5_Total_STAT5\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 301 points: 0.027132749557495117\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `plot_2_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_report_for_task2` ...", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 1 plots:\r\n Adlung2021 _model_jakstat_pa.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 71 data sets\r\n Plots (1):\r\n plot_2_task2: 2 curves\r\n\r\nExecuting SED-ML file 1: Adlung2021 _model_jakstat_pa.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_2_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V4\r\nInfo: multiple compartments defined but reaction v1_v_0 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v2_v_1 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v3_v_2 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v4_v_3 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v5_v_4 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v6_v_5 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v7_v_6 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v8_v_7 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v9_v_8 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v12_v_11 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v13_v_12 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v14_v_13 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v15_v_14 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v16_v_15 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v17_v_16 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v18_v_17 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v19_v_18 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v20_v_19 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v21_v_20 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v22_v_21 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v23_v_22 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v24_v_23 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v25_v_24 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v26_v_25 is not located in any of them.\r\nWriting file: /tmp/tmp52j24h4u.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpkpo18lvp.xml\r\nout: /tmp/tmp52j24h4u.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmp52j24h4u.psc loading ..... \r\nParsing file: /tmp/tmp52j24h4u.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"epo_level\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_EpoRJAK2\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_SHP1\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"Total_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"measuralbe_pSTAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"_pSTAT5_Total_STAT5\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 301 points: 0.11591196060180664\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\nInfo: multiple compartments defined but reaction v1_v_0 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v2_v_1 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v3_v_2 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v4_v_3 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v5_v_4 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v6_v_5 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v7_v_6 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v8_v_7 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v9_v_8 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v12_v_11 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v13_v_12 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v14_v_13 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v15_v_14 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v16_v_15 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v17_v_16 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v18_v_17 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v19_v_18 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v20_v_19 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v21_v_20 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v22_v_21 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v23_v_22 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v24_v_23 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v25_v_24 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v26_v_25 is not located in any of them.\r\nWriting file: /tmp/tmpunb6fss9.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmp8ka1kca8.xml\r\nout: /tmp/tmpunb6fss9.psc\r\nUsing model directory: /Pysces/psc\r\n/tmp/tmpunb6fss9.psc loading ..... \r\nParsing file: /tmp/tmpunb6fss9.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"epo_level\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_EpoRJAK2\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_SHP1\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"Total_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"measuralbe_pSTAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"_pSTAT5_Total_STAT5\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 301 points: 0.03559994697570801\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `plot_2_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_report_for_task2` ...", "outputs": [ { "curves": [ @@ -944,7 +944,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.261819, + "duration": 0.337374, "exception": null, "id": "plot_2_task2", "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", @@ -1238,7 +1238,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.24901, + "duration": 0.266283, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -1251,10 +1251,10 @@ "tasks": [ { "algorithm": null, - "duration": 0.568385, + "duration": 0.766741, "exception": null, "id": "task2", - "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n", + "output": "/usr/local/lib/python3.10/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.10/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning: \u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\r\n", "simulatorDetails": null, "skipReason": null, "status": "SUCCEEDED" @@ -1270,12 +1270,12 @@ "rbapy": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/rbapy' returned non-zero exit status 1", "log_yml": { - "duration": 0.147269, + "duration": 0.183107, "exception": { "message": "`/root/in/Adlung2021__model_jakstat_pa.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpac35die7/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpd2o9_oy0/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` may be invalid.\r\n - Model `model` may be invalid.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` may be invalid.\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_SHP1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_STAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'epo_level' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'STAT5 + pSTAT5 + 0.275 * npSTAT5' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'pSTAT5 / Total_STAT5 * 100' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_0(Epo, EpoRJAK2, JAK2ActEpo, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_1(DeaEpoRJAKActSHP1, EpoRpJAK2, SHP1Act, SHP1ActEpoR)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_2(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_3(EpoRActJAK2, EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_4(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_5(EpoRActJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_6(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_7(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_8(DeaEpoRJAKActSHP1, SHP1Act, SHP1ActEpoR, p12EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_11(EpoRpJAK2, SHP1, SHP1ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SHP1Dea * SHP1Act' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_13(EpoRpJAK2, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActJAK2, p12EpoRpJAK2, p1EpoRpJAK2, p2EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_14(CIS, CISEqc, CISInh, SOCS3, SOCS3Eqc, SOCS3Inh, STAT5, STAT5ActEpoR, p12EpoRpJAK2, p1EpoRpJAK2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_15(STAT5Imp, cyt, pSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_16(STAT5Exp, npSTAT5, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * Function_for_v_17(ActD, CISRNAEqc, CISRNATurn, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'nuc * CISRNADelay * CISnRNA1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_19(CISRNADelay, CISnRNA2, nuc)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISRNATurn * CISRNA' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_21(CISEqc, CISRNA, CISTurn)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * CISTurn * CIS' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'Function_for_v_23(ActD, SOCS3Eqc, SOCS3Turn, cyt, npSTAT5)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * SOCS3Turn * SOCS3' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'cyt * Function_for_v_25(SOCS3Eqc, SOCS3EqcOE, SOCS3Turn, SOCS3oe)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISInh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNADelay' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNAEqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISRNATurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'CISTurn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'DeaEpoRJAKActSHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'EpoRActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'JAK2ActEpo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SHP1Dea' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Eqc' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3EqcOE' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Inh' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3Turn' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'SOCS3oe' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActEpoR' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5ActJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Exp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'STAT5Imp' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'epo_level' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_EpoRJAK2' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_SHP1' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'init_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Epo' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'Total_STAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'measuralbe_pSTAT5' does not have a 'units' attribute.\r\n \r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id '_pSTAT5_Total_STAT5' does not have a 'units' attribute.\r\n \r\n - Task `task2` may be invalid.\r\n - Changes may be invalid.\r\n - Change 1 may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `measuralbe_pSTAT5_1_task2` may be invalid.\r\n - Variable `p1_measuralbe_pSTAT5_1_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `_pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - Variable `p1__pSTAT5_Total_STAT5_2_task2` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p1EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p1EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p2EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p2EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_p12EpoRpJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_p12EpoRpJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Act` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Act__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_pSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_pSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_npSTAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_npSTAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA1` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISnRNA2` may be invalid.\r\n - Variable `auto_dg_for_task2_CISnRNA2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNA` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNA__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CIS` may be invalid.\r\n - Variable `auto_dg_for_task2_CIS__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_ActD` may be invalid.\r\n - Variable `auto_dg_for_task2_ActD__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISInh` may be invalid.\r\n - Variable `auto_dg_for_task2_CISInh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNADelay` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNADelay__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNAEqc` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNAEqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISRNATurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISRNATurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_CISTurn` may be invalid.\r\n - Variable `auto_dg_for_task2_CISTurn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_DeaEpoRJAKActSHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_EpoRActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_EpoRActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_JAK2ActEpo` may be invalid.\r\n - Variable `auto_dg_for_task2_JAK2ActEpo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SHP1Dea` may be invalid.\r\n - Variable `auto_dg_for_task2_SHP1Dea__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Eqc` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Eqc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3EqcOE` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3EqcOE__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Inh` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Inh__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3Turn` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3Turn__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_SOCS3oe` may be invalid.\r\n - Variable `auto_dg_for_task2_SOCS3oe__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActEpoR` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActEpoR__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5ActJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5ActJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Exp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Exp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_STAT5Imp` may be invalid.\r\n - Variable `auto_dg_for_task2_STAT5Imp__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_epo_level` may be invalid.\r\n - Variable `auto_dg_for_task2_epo_level__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_EpoRJAK2` may be invalid.\r\n - Variable `auto_dg_for_task2_init_EpoRJAK2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_SHP1` may be invalid.\r\n - Variable `auto_dg_for_task2_init_SHP1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_init_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_init_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Epo` may be invalid.\r\n - Variable `auto_dg_for_task2_Epo__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_Total_STAT5` may be invalid.\r\n - Variable `auto_dg_for_task2_Total_STAT5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_cyt` may be invalid.\r\n - Variable `auto_dg_for_task2_cyt__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_nuc` may be invalid.\r\n - Variable `auto_dg_for_task2_nuc__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v1_v_0` may be invalid.\r\n - Variable `auto_dg_for_task2_v1_v_0__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v2_v_1` may be invalid.\r\n - Variable `auto_dg_for_task2_v2_v_1__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v3_v_2` may be invalid.\r\n - Variable `auto_dg_for_task2_v3_v_2__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v4_v_3` may be invalid.\r\n - Variable `auto_dg_for_task2_v4_v_3__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v5_v_4` may be invalid.\r\n - Variable `auto_dg_for_task2_v5_v_4__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v6_v_5` may be invalid.\r\n - Variable `auto_dg_for_task2_v6_v_5__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v7_v_6` may be invalid.\r\n - Variable `auto_dg_for_task2_v7_v_6__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v8_v_7` may be invalid.\r\n - Variable `auto_dg_for_task2_v8_v_7__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v9_v_8` may be invalid.\r\n - Variable `auto_dg_for_task2_v9_v_8__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v12_v_11` may be invalid.\r\n - Variable `auto_dg_for_task2_v12_v_11__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v13_v_12` may be invalid.\r\n - Variable `auto_dg_for_task2_v13_v_12__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v14_v_13` may be invalid.\r\n - Variable `auto_dg_for_task2_v14_v_13__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v15_v_14` may be invalid.\r\n - Variable `auto_dg_for_task2_v15_v_14__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v16_v_15` may be invalid.\r\n - Variable `auto_dg_for_task2_v16_v_15__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v17_v_16` may be invalid.\r\n - Variable `auto_dg_for_task2_v17_v_16__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v18_v_17` may be invalid.\r\n - Variable `auto_dg_for_task2_v18_v_17__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v19_v_18` may be invalid.\r\n - Variable `auto_dg_for_task2_v19_v_18__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v20_v_19` may be invalid.\r\n - Variable `auto_dg_for_task2_v20_v_19__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v21_v_20` may be invalid.\r\n - Variable `auto_dg_for_task2_v21_v_20__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v22_v_21` may be invalid.\r\n - Variable `auto_dg_for_task2_v22_v_21__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v23_v_22` may be invalid.\r\n - Variable `auto_dg_for_task2_v23_v_22__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v24_v_23` may be invalid.\r\n - Variable `auto_dg_for_task2_v24_v_23__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v25_v_24` may be invalid.\r\n - Variable `auto_dg_for_task2_v25_v_24__x` may be invalid.\r\n - XPath could not be validated.\r\n - Data generator `auto_dg_for_task2_v26_v_25` may be invalid.\r\n - Variable `auto_dg_for_task2_v26_v_25__x` may be invalid.\r\n - XPath could not be validated.\r\n - Output `plot_2_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\r\n - Output `autogen_report_for_task2` may be invalid.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1290,12 +1290,12 @@ "tellurium": { "exception_message": "", "log_yml": { - "duration": 2.251039, + "duration": 1.907736, "exception": null, - "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmp4j4t4e5h/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmp4j4t4e5h/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n", + "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmpcaxl3art/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe COMBINE/OMEX archive has warnings.\r\n - OMEX manifests should not contain content entries for themselves.\r\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` has warnings.\r\n - Model `model` has warnings.\r\n - The model file `Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning:\r\n\r\n\u001b[33m`/tmp/tmpcaxl3art/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mThe SED document is potentially incorrect.\r\n - Output `plot_2_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\r\n - Output `autogen_report_for_task2` has warnings.\r\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks, which some simulation tools do not have the capability to execute.\u001b[0m\r\n\r\n", "sedDocuments": [ { - "duration": 1.408548, + "duration": 1.402256, "exception": null, "location": "Adlung2021 _model_jakstat_pa.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 1 plots:\r\n Adlung2021 _model_jakstat_pa.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 71 data sets\r\n Plots (1):\r\n plot_2_task2: 2 curves\r\n\r\nExecuting SED-ML file 1: Adlung2021 _model_jakstat_pa.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_2_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `plot_2_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_report_for_task2` ...", @@ -1311,7 +1311,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.348285, + "duration": 0.483663, "exception": null, "id": "plot_2_task2", "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning:\r\n\r\n\u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n\r\n", @@ -1605,7 +1605,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.344205, + "duration": 0.334936, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -1618,10 +1618,10 @@ "tasks": [ { "algorithm": null, - "duration": 0.16194, + "duration": 0.311352, "exception": null, "id": "task2", - "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33m- Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v5_v_4__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNADelay__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p12EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v7_v_6__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1_measuralbe_pSTAT5_1_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v13_v_12__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNATurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Turn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmp4j4t4e5h/./Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning:\r\n\r\n\u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mAlgorithm parameter with KiSAO id 'KISAO_0000216' was ignored because it is not supported. Parameter must have one of the following KiSAO ids:\r\n - KISAO_0000209: relative_tolerance (relative tolerance)\r\n - KISAO_0000211: absolute_tolerance (absolute tolerance)\r\n - KISAO_0000571: absolute_tolerance_adjustment_factor (absolute tolerance adjustment factor)\r\n - KISAO_0000220: maximum_bdf_order (Maximum Backward Differentiation Formula (BDF) order)\r\n - KISAO_0000219: maximum_adams_order (Maximum Adams order)\r\n - KISAO_0000415: maximum_num_steps (Maximum number of steps)\r\n - KISAO_0000467: maximum_time_step (Maximum time step)\r\n - KISAO_0000485: minimum_time_step (Minimum time step)\r\n - KISAO_0000559: initial_time_step (Initial time step)\r\n - KISAO_0000671: stiff (Stiff)\r\n - KISAO_0000670: multiple_steps (Multiple steps)\u001b[0m\r\n\r\n", + "output": "/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33m- Variable `auto_dg_for_task2_SHP1Act__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_epo_level__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISTurn__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Exp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3EqcOE__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `p1__pSTAT5_Total_STAT5_2_task2` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_DeaEpoRJAKActSHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5Imp__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v16_v_15__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v8_v_7__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p2EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_EpoRJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v19_v_18__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Inh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v24_v_23__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v21_v_20__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_cyt__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3Eqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v18_v_17__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v12_v_11__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_pSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_nuc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v4_v_3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CIS__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_JAK2ActEpo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Epo__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_p1EpoRpJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v1_v_0__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNA__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v23_v_22__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v6_v_5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v17_v_16__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v3_v_2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v20_v_19__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v14_v_13__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISnRNA2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v9_v_8__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_ActD__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v26_v_25__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v15_v_14__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_npSTAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1Dea__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v2_v_1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SHP1ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActEpoR__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_Total_STAT5__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISInh__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_SOCS3oe__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_init_SHP1__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_CISRNAEqc__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_EpoRActJAK2__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v22_v_21__x` has warnings.\r\n - 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XPath could not be validated.\r\n- Variable `auto_dg_for_task2_v25_v_24__x` has warnings.\r\n - XPath could not be validated.\r\n- Variable `auto_dg_for_task2_STAT5ActJAK2__x` has warnings.\r\n - XPath could not be validated.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mModel `model` may be invalid.\r\n - The model file `/tmp/tmpcaxl3art/./Adlung2021 _model_jakstat_pa.xml` has warnings.\r\n - 43 warnings of type SBML unit consistency (99505). The following is the first warning at line 1388, column 6:\r\n - In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. \r\n The units of the expression 'init_EpoRJAK2' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.\r\n - 29 warnings of type Modeling practice (80701). The following is the first warning at line 1357, column 6:\r\n - As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\r\n The with the id 'ActD' does not have a 'units' attribute.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/kisao/utils.py:518: AlgorithmSubstitutedWarning:\r\n\r\n\u001b[33m'CVODE' (KISAO_0000019) will be substituted for 'ODE solver' (KISAO_0000694) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\r\n\r\n/usr/local/lib/python3.11/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning:\r\n\r\n\u001b[33mAlgorithm parameter with KiSAO id 'KISAO_0000216' was ignored because it is not supported. Parameter must have one of the following KiSAO ids:\r\n - KISAO_0000209: relative_tolerance (relative tolerance)\r\n - KISAO_0000211: absolute_tolerance (absolute tolerance)\r\n - KISAO_0000571: absolute_tolerance_adjustment_factor (absolute tolerance adjustment factor)\r\n - KISAO_0000220: maximum_bdf_order (Maximum Backward Differentiation Formula (BDF) order)\r\n - KISAO_0000219: maximum_adams_order (Maximum Adams order)\r\n - KISAO_0000415: maximum_num_steps (Maximum number of steps)\r\n - KISAO_0000467: maximum_time_step (Maximum time step)\r\n - KISAO_0000485: minimum_time_step (Minimum time step)\r\n - KISAO_0000559: initial_time_step (Initial time step)\r\n - KISAO_0000671: stiff (Stiff)\r\n - KISAO_0000670: multiple_steps (Multiple steps)\u001b[0m\r\n\r\n", "simulatorDetails": null, "skipReason": null, "status": "SUCCEEDED" @@ -1637,7 +1637,7 @@ "vcell": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/vcell' returned non-zero exit status 1", "log_yml": { - "duration": 6, + "duration": 8, "exception": null, "output": "Processing Adlung2021 _model_jakstat_pa.sedml. Done", "sedDocuments": [ @@ -2000,12 +2000,12 @@ "xpp": { "exception_message": "Command '-i '/root/in/Adlung2021__model_jakstat_pa.omex' -o /root/out' in image 'ghcr.io/biosimulators/xpp' returned non-zero exit status 1", "log_yml": { - "duration": 0.112935, + "duration": 0.055261, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpp0y6u9k5/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", + "output": "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpsvf82s9f/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only a few features introduced after L1V3 are supported. Most newer features, such as finer stylistic control of plots and parameter estimation, are not yet supported.\u001b[0m\r\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" diff --git a/BioModels/BIOMD0000001077/tests/results_remote.json b/BioModels/BIOMD0000001077/tests/results_remote.json index f11ed86d..7bb6570c 100644 --- a/BioModels/BIOMD0000001077/tests/results_remote.json +++ b/BioModels/BIOMD0000001077/tests/results_remote.json @@ -1,11 +1,11 @@ { "amici": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599aaec3054f763d585a9a", - "download": "https://api.biosimulations.org/results/67599aaec3054f763d585a9a/download", - "logs": "https://api.biosimulations.org/logs/67599aaec3054f763d585a9a?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864faa167dc18b5b2478d5", + "download": "https://api.biosimulations.org/results/67864faa167dc18b5b2478d5/download", + "logs": "https://api.biosimulations.org/logs/67864faa167dc18b5b2478d5?includeOutput=true", "log_yml": { - "duration": 27.545858, + "duration": 25.866522, "exception": { "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element", "type": "CombineArchiveExecutionError" @@ -13,7 +13,7 @@ "output": "", "sedDocuments": [ { - "duration": 27.158161, + "duration": 25.453396, "exception": { "message": "The SED document did not execute successfully:\n\n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element", "type": "SedmlExecutionError" @@ -32,7 +32,7 @@ "status": "SKIPPED" } ], - "duration": 0.226673, + "duration": 0.220631, "exception": null, "id": "plot_2_task2", "output": "", @@ -326,7 +326,7 @@ "status": "SKIPPED" } ], - "duration": 0.054884, + "duration": 0.048798, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -339,7 +339,7 @@ "tasks": [ { "algorithm": "KISAO_0000496", - "duration": 26.262648, + "duration": 24.543269, "exception": null, "id": "task1", "output": "", @@ -362,7 +362,7 @@ }, { "algorithm": null, - "duration": 0.035781, + "duration": 0.037726, "exception": { "message": "target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] is not a valid XPath to an attribute of a model element", "type": "ValueError" @@ -382,11 +382,11 @@ }, "brian2": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599ab09fa297efdca4d483", - "download": "https://api.biosimulations.org/results/67599ab09fa297efdca4d483/download", - "logs": "https://api.biosimulations.org/logs/67599ab09fa297efdca4d483?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864fac1f52f47f628b595c", + "download": "https://api.biosimulations.org/results/67864fac1f52f47f628b595c/download", + "logs": "https://api.biosimulations.org/logs/67864fac1f52f47f628b595c?includeOutput=true", "log_yml": { - "duration": 0.052158, + "duration": 0.056735, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -399,11 +399,11 @@ }, "bionetgen": { "response": 201, - 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"logs": "https://api.biosimulations.org/logs/67599ab5707aa64104620e7b?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864fafba5a3f02b9f2f3c8", + "download": "https://api.biosimulations.org/results/67864fafba5a3f02b9f2f3c8/download", + "logs": "https://api.biosimulations.org/logs/67864fafba5a3f02b9f2f3c8?includeOutput=true", "log_yml": { - "duration": 0.215529, + "duration": 0.194237, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -433,11 +433,11 @@ }, "cbmpy": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599ab7707aa64104620e80", - "download": "https://api.biosimulations.org/results/67599ab7707aa64104620e80/download", - "logs": "https://api.biosimulations.org/logs/67599ab7707aa64104620e80?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864fb1167dc18b5b2478dc", + "download": "https://api.biosimulations.org/results/67864fb1167dc18b5b2478dc/download", + "logs": "https://api.biosimulations.org/logs/67864fb1167dc18b5b2478dc?includeOutput=true", "log_yml": { - "duration": 0.291428, + "duration": 0.280652, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -450,11 +450,11 @@ }, "cobrapy": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599abac3054f763d585aa0", - "download": "https://api.biosimulations.org/results/67599abac3054f763d585aa0/download", - "logs": "https://api.biosimulations.org/logs/67599abac3054f763d585aa0?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864fb31f52f47f628b5962", + "download": "https://api.biosimulations.org/results/67864fb31f52f47f628b5962/download", + "logs": "https://api.biosimulations.org/logs/67864fb31f52f47f628b5962?includeOutput=true", "log_yml": { - "duration": 0.200488, + "duration": 0.192863, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -467,16 +467,16 @@ }, "copasi": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599abdc3054f763d585aa4", - "download": "https://api.biosimulations.org/results/67599abdc3054f763d585aa4/download", - "logs": "https://api.biosimulations.org/logs/67599abdc3054f763d585aa4?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864fb51f52f47f628b5965", + "download": "https://api.biosimulations.org/results/67864fb51f52f47f628b5965/download", + "logs": "https://api.biosimulations.org/logs/67864fb51f52f47f628b5965?includeOutput=true", "log_yml": { - "duration": 1.737705, + "duration": 1.725625, "exception": null, "output": "", "sedDocuments": [ { - "duration": 1.36317, + "duration": 1.332249, "exception": null, "location": "Adlung2021 _model_jakstat_pa.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 1 plots:\r\n Adlung2021 _model_jakstat_pa.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 71 data sets\r\n Plots (1):\r\n plot_2_task2: 2 curves\r\n\r\nExecuting SED-ML file 1: Adlung2021 _model_jakstat_pa.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_2_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...woohoo!\r\nwoohoo!\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `plot_2_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_report_for_task2` ...", @@ -492,7 +492,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.438701, + "duration": 0.429027, "exception": null, "id": "plot_2_task2", "output": "", @@ -786,7 +786,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.300754, + "duration": 0.327593, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -799,7 +799,7 @@ "tasks": [ { "algorithm": null, - "duration": 0.449412, + "duration": 0.406749, "exception": null, "id": "task2", "output": "", @@ -816,11 +816,11 @@ }, "gillespy2": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599abf9fa297efdca4d491", - "download": "https://api.biosimulations.org/results/67599abf9fa297efdca4d491/download", - "logs": "https://api.biosimulations.org/logs/67599abf9fa297efdca4d491?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864fb7ba5a3f02b9f2f3ce", + "download": "https://api.biosimulations.org/results/67864fb7ba5a3f02b9f2f3ce/download", + "logs": "https://api.biosimulations.org/logs/67864fb7ba5a3f02b9f2f3ce?includeOutput=true", "log_yml": { - "duration": 0.214277, + "duration": 0.202093, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -833,11 +833,11 @@ }, "ginsim": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599ac29fa297efdca4d496", - "download": "https://api.biosimulations.org/results/67599ac29fa297efdca4d496/download", - "logs": "https://api.biosimulations.org/logs/67599ac29fa297efdca4d496?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864fb91f52f47f628b596b", + "download": "https://api.biosimulations.org/results/67864fb91f52f47f628b596b/download", + "logs": "https://api.biosimulations.org/logs/67864fb91f52f47f628b596b?includeOutput=true", "log_yml": { - "duration": 0.196684, + "duration": 0.187235, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -850,11 +850,11 @@ }, "libsbmlsim": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599ac4c3054f763d585ab7", - "download": "https://api.biosimulations.org/results/67599ac4c3054f763d585ab7/download", - "logs": "https://api.biosimulations.org/logs/67599ac4c3054f763d585ab7?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864fbb1f52f47f628b596e", + "download": "https://api.biosimulations.org/results/67864fbb1f52f47f628b596e/download", + "logs": "https://api.biosimulations.org/logs/67864fbb1f52f47f628b596e?includeOutput=true", "log_yml": { - "duration": 0.220112, + "duration": 0.189568, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -867,11 +867,11 @@ }, "masspy": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599ac79fa297efdca4d4ac", - "download": "https://api.biosimulations.org/results/67599ac79fa297efdca4d4ac/download", - "logs": "https://api.biosimulations.org/logs/67599ac79fa297efdca4d4ac?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864fbdba5a3f02b9f2f3d7", + "download": "https://api.biosimulations.org/results/67864fbdba5a3f02b9f2f3d7/download", + "logs": "https://api.biosimulations.org/logs/67864fbdba5a3f02b9f2f3d7?includeOutput=true", "log_yml": { - "duration": 1.634359, + "duration": 1.559867, "exception": { "message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n Could not load MassModel 'Adlung2021___Cell_to_cell_variability_in_JAK2_STAT5_pathway'\n \n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] cannot be changed by XML manipulation, as the target is not an attribute of a model element", "type": "CombineArchiveExecutionError" @@ -879,7 +879,7 @@ "output": "", "sedDocuments": [ { - "duration": 1.14293, + "duration": 1.060146, "exception": { "message": "The SED document did not execute successfully:\n\n Could not load MassModel 'Adlung2021___Cell_to_cell_variability_in_JAK2_STAT5_pathway'\n\n target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] cannot be changed by XML manipulation, as the target is not an attribute of a model element", "type": "SedmlExecutionError" @@ -898,7 +898,7 @@ "status": "SKIPPED" } ], - "duration": 0.114204, + "duration": 0.101407, "exception": null, "id": "plot_2_task2", "output": "", @@ -1192,7 +1192,7 @@ "status": "SKIPPED" } ], - "duration": 0.054267, + "duration": 0.047828, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -1205,7 +1205,7 @@ "tasks": [ { "algorithm": null, - "duration": 0.295311, + "duration": 0.27758, "exception": { "message": "Could not load MassModel 'Adlung2021___Cell_to_cell_variability_in_JAK2_STAT5_pathway'", "type": "MassSimulationError" @@ -1218,7 +1218,7 @@ }, { "algorithm": null, - "duration": 0.040358, + "duration": 0.036698, "exception": { "message": "target /sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='epo_level'] cannot be changed by XML manipulation, as the target is not an attribute of a model element", "type": "NotImplementedError" @@ -1238,11 +1238,11 @@ }, "netpyne": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599ac99fa297efdca4d4b9", - "download": "https://api.biosimulations.org/results/67599ac99fa297efdca4d4b9/download", - "logs": "https://api.biosimulations.org/logs/67599ac99fa297efdca4d4b9?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864fbf1f52f47f628b5975", + "download": "https://api.biosimulations.org/results/67864fbf1f52f47f628b5975/download", + "logs": "https://api.biosimulations.org/logs/67864fbf1f52f47f628b5975?includeOutput=true", "log_yml": { - "duration": 0.070045, + "duration": 0.057351, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -1255,11 +1255,11 @@ }, "neuron": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599acc9fa297efdca4d4ca", - "download": "https://api.biosimulations.org/results/67599acc9fa297efdca4d4ca/download", - "logs": "https://api.biosimulations.org/logs/67599acc9fa297efdca4d4ca?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864fc01f52f47f628b599a", + "download": "https://api.biosimulations.org/results/67864fc01f52f47f628b599a/download", + "logs": "https://api.biosimulations.org/logs/67864fc01f52f47f628b599a?includeOutput=true", "log_yml": { - "duration": 0.050918, + "duration": 0.10428, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -1272,16 +1272,16 @@ }, "opencor": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599acfc3054f763d585ae9", - "download": "https://api.biosimulations.org/results/67599acfc3054f763d585ae9/download", - "logs": "https://api.biosimulations.org/logs/67599acfc3054f763d585ae9?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864fc2ba5a3f02b9f2f3eb", + "download": "https://api.biosimulations.org/results/67864fc2ba5a3f02b9f2f3eb/download", + "logs": "https://api.biosimulations.org/logs/67864fc2ba5a3f02b9f2f3eb?includeOutput=true", "log_yml": { - "duration": 0.033878, + "duration": 0.03535, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" }, - "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpblkh9ofw/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", + "output": "/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: SedmlFeatureNotSupportedWarning: \u001b[33m`/tmp/tmpofnddlgu/./Adlung2021 _model_jakstat_pa.sedml` is encoded using L1V4. Only features available in L1V3 are supported. Newer features such as simple repeated tasks are not yet supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n", "sedDocuments": [], "skipReason": null, "status": "FAILED" @@ -1289,11 +1289,11 @@ }, "pyneuroml": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599ad1c3054f763d585aef", - "download": "https://api.biosimulations.org/results/67599ad1c3054f763d585aef/download", - "logs": "https://api.biosimulations.org/logs/67599ad1c3054f763d585aef?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864fc3167dc18b5b247904", + "download": "https://api.biosimulations.org/results/67864fc3167dc18b5b247904/download", + "logs": "https://api.biosimulations.org/logs/67864fc3167dc18b5b247904?includeOutput=true", "log_yml": { - "duration": 0.051678, + "duration": 0.051503, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -1306,19 +1306,19 @@ }, "pysces": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599ad39fa297efdca4d4df", - "download": "https://api.biosimulations.org/results/67599ad39fa297efdca4d4df/download", - "logs": "https://api.biosimulations.org/logs/67599ad39fa297efdca4d4df?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864fc5167dc18b5b247911", + "download": "https://api.biosimulations.org/results/67864fc5167dc18b5b247911/download", + "logs": "https://api.biosimulations.org/logs/67864fc5167dc18b5b247911?includeOutput=true", "log_yml": { - "duration": 1.931887, + "duration": 1.877943, "exception": null, "output": "libtk8.6.so: cannot open shared object file: No such file or directory\r\n\r\nPySCeS defaults to matplotlib's TKagg backend if not specified in the user configuration file, set \"matplotlib_backend = \" \r\nMatplotlib interface loaded (pysces.plt.m)\r\nPitcon routines available\r\nNLEQ2 routines available\r\nSBML support available\r\nYou are using NumPy (2.1.2) with SciPy (1.14.1)\r\nAssimulo CVode available\r\nRateChar is available\r\nParallel scanner is available\r\n\r\nPySCeS environment\r\n******************\r\npysces.model_dir = /home/FCAM/crbmapi/Pysces/psc\r\npysces.output_dir = /home/FCAM/crbmapi/Pysces\r\n\r\n\r\n***********************************************************************\r\n* Welcome to PySCeS (1.2.2) - Python Simulator for Cellular Systems *\r\n* http://pysces.sourceforge.net *\r\n* Copyright(C) B.G. Olivier, J.M. Rohwer, J.-H.S. Hofmeyr, 2004-2024 *\r\n* Triple-J Group for Molecular Cell Physiology *\r\n* Stellenbosch University, ZA and VU University Amsterdam, NL *\r\n* PySCeS is distributed under the PySCeS (BSD style) licence, see *\r\n* LICENCE.txt (supplied with this release) for details *\r\n* Please cite PySCeS with: doi:10.1093/bioinformatics/bti046 *\r\n***********************************************************************\r\n", "sedDocuments": [ { - "duration": 1.557796, + "duration": 1.513974, "exception": null, "location": "Adlung2021 _model_jakstat_pa.sedml", - "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 1 plots:\r\n Adlung2021 _model_jakstat_pa.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 71 data sets\r\n Plots (1):\r\n plot_2_task2: 2 curves\r\n\r\nExecuting SED-ML file 1: Adlung2021 _model_jakstat_pa.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_2_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V4\r\nInfo: multiple compartments defined but reaction v1_v_0 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v2_v_1 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v3_v_2 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v4_v_3 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v5_v_4 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v6_v_5 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v7_v_6 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v8_v_7 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v9_v_8 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v12_v_11 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v13_v_12 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v14_v_13 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v15_v_14 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v16_v_15 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v17_v_16 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v18_v_17 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v19_v_18 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v20_v_19 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v21_v_20 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v22_v_21 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v23_v_22 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v24_v_23 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v25_v_24 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v26_v_25 is not located in any of them.\r\nWriting file: /tmp/tmptelviber.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpepd0wri6.xml\r\nout: /tmp/tmptelviber.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmptelviber.psc loading ..... \r\nParsing file: /tmp/tmptelviber.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"epo_level\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_EpoRJAK2\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_SHP1\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"Total_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"measuralbe_pSTAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"_pSTAT5_Total_STAT5\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 301 points: 0.10172271728515625\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\nInfo: multiple compartments defined but reaction v1_v_0 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v2_v_1 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v3_v_2 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v4_v_3 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v5_v_4 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v6_v_5 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v7_v_6 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v8_v_7 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v9_v_8 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v12_v_11 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v13_v_12 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v14_v_13 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v15_v_14 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v16_v_15 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v17_v_16 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v18_v_17 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v19_v_18 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v20_v_19 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v21_v_20 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v22_v_21 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v23_v_22 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v24_v_23 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v25_v_24 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v26_v_25 is not located in any of them.\r\nWriting file: /tmp/tmp9fsi8kio.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpacmt7gzo.xml\r\nout: /tmp/tmp9fsi8kio.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmp9fsi8kio.psc loading ..... \r\nParsing file: /tmp/tmp9fsi8kio.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"epo_level\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_EpoRJAK2\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_SHP1\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"Total_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"measuralbe_pSTAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"_pSTAT5_Total_STAT5\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 301 points: 0.03294992446899414\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `plot_2_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_report_for_task2` ...", + "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 1 plots:\r\n Adlung2021 _model_jakstat_pa.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 71 data sets\r\n Plots (1):\r\n plot_2_task2: 2 curves\r\n\r\nExecuting SED-ML file 1: Adlung2021 _model_jakstat_pa.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_2_task2`\r\n Executing task 1: `task2`\r\n Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V4\r\nInfo: multiple compartments defined but reaction v1_v_0 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v2_v_1 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v3_v_2 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v4_v_3 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v5_v_4 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v6_v_5 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v7_v_6 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v8_v_7 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v9_v_8 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v12_v_11 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v13_v_12 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v14_v_13 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v15_v_14 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v16_v_15 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v17_v_16 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v18_v_17 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v19_v_18 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v20_v_19 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v21_v_20 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v22_v_21 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v23_v_22 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v24_v_23 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v25_v_24 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v26_v_25 is not located in any of them.\r\nWriting file: /tmp/tmpxstw78ty.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpx_lr7g_4.xml\r\nout: /tmp/tmpxstw78ty.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmpxstw78ty.psc loading ..... \r\nParsing file: /tmp/tmpxstw78ty.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"epo_level\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_EpoRJAK2\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_SHP1\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"Total_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"measuralbe_pSTAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"_pSTAT5_Total_STAT5\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 301 points: 0.10404205322265625\r\nCheck SBML support is at action level 2\r\nSBML file is L2V4\r\nInfo: multiple compartments defined but reaction v1_v_0 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v2_v_1 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v3_v_2 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v4_v_3 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v5_v_4 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v6_v_5 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v7_v_6 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v8_v_7 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v9_v_8 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v12_v_11 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v13_v_12 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v14_v_13 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v15_v_14 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v16_v_15 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v17_v_16 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v18_v_17 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v19_v_18 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v20_v_19 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v21_v_20 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v22_v_21 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v23_v_22 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v24_v_23 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v25_v_24 is not located in any of them.\r\nInfo: multiple compartments defined but reaction v26_v_25 is not located in any of them.\r\nWriting file: /tmp/tmp7g8p1g12.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpgr_2odvi.xml\r\nout: /tmp/tmp7g8p1g12.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmp7g8p1g12.psc loading ..... \r\nParsing file: /tmp/tmp7g8p1g12.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"epo_level\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_EpoRJAK2\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_SHP1\" has been initialised but does not occur in a rate equation\r\nInfo: \"init_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"Total_STAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"measuralbe_pSTAT5\" has been initialised but does not occur in a rate equation\r\nInfo: \"_pSTAT5_Total_STAT5\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . done.\r\n \r\n\r\nAssignment rule(s) detected.\r\nINFO: Assignment Rules detected and Assimulo installed,\r\nswitching to CVODE (mod.mode_integrator='CVODE').\r\n\r\nCVODE time for 301 points: 0.03676605224609375\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `plot_2_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_report_for_task2` ...", "outputs": [ { "curves": [ @@ -1331,7 +1331,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.33374, + "duration": 0.321344, "exception": null, "id": "plot_2_task2", "output": "", @@ -1625,7 +1625,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.277968, + "duration": 0.264701, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -1638,7 +1638,7 @@ "tasks": [ { "algorithm": null, - "duration": 0.76111, + "duration": 0.770728, "exception": null, "id": "task2", "output": "", @@ -1655,11 +1655,11 @@ }, "rbapy": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599ad69fa297efdca4d4eb", - "download": "https://api.biosimulations.org/results/67599ad69fa297efdca4d4eb/download", - "logs": "https://api.biosimulations.org/logs/67599ad69fa297efdca4d4eb?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864fc6ba5a3f02b9f2f410", + "download": "https://api.biosimulations.org/results/67864fc6ba5a3f02b9f2f410/download", + "logs": "https://api.biosimulations.org/logs/67864fc6ba5a3f02b9f2f410?includeOutput=true", "log_yml": { - "duration": 0.196313, + "duration": 0.200788, "exception": { "message": "`/root/archive.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `./Adlung2021 _model_jakstat_pa.sedml` is invalid.\n - Simulation `sim1` is invalid.\n - Algorithm has an invalid KiSAO id `KISAO_0000694`.", "type": "ValueError" @@ -1672,11 +1672,11 @@ }, "smoldyn": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599ad8707aa64104620ee3", - "download": "https://api.biosimulations.org/results/67599ad8707aa64104620ee3/download", - "logs": "https://api.biosimulations.org/logs/67599ad8707aa64104620ee3?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864fc81f52f47f628b59c8", + "download": "https://api.biosimulations.org/results/67864fc81f52f47f628b59c8/download", + "logs": "https://api.biosimulations.org/logs/67864fc81f52f47f628b59c8?includeOutput=true", "log_yml": { - "duration": 0.050916, + "duration": 0.050565, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" @@ -1689,16 +1689,16 @@ }, "tellurium": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599adbc3054f763d585b17", - "download": "https://api.biosimulations.org/results/67599adbc3054f763d585b17/download", - "logs": "https://api.biosimulations.org/logs/67599adbc3054f763d585b17?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864fca167dc18b5b247934", + "download": "https://api.biosimulations.org/results/67864fca167dc18b5b247934/download", + "logs": "https://api.biosimulations.org/logs/67864fca167dc18b5b247934?includeOutput=true", "log_yml": { - "duration": 1.948321, + "duration": 1.90943, "exception": null, "output": "", "sedDocuments": [ { - "duration": 1.49288, + "duration": 1.436238, "exception": null, "location": "Adlung2021 _model_jakstat_pa.sedml", "output": "Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 1 plots:\r\n Adlung2021 _model_jakstat_pa.sedml:\r\n Tasks (2):\r\n task1\r\n task2\r\n Reports (1):\r\n autogen_report_for_task2: 71 data sets\r\n Plots (1):\r\n plot_2_task2: 2 curves\r\n\r\nExecuting SED-ML file 1: Adlung2021 _model_jakstat_pa.sedml ...\r\n Found 2 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n `task2`\r\n Outputs:\r\n `autogen_report_for_task2`\r\n `plot_2_task2`\r\n Executing task 1: `task1`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `plot_2_task2` ... \u001b[36mqueued\u001b[0m\r\n Generating output 2: `autogen_report_for_task2` ... \u001b[36mqueued\u001b[0m\r\n Executing task 2: `task2`\r\n Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `plot_2_task2` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_report_for_task2` ...", @@ -1714,7 +1714,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.161037, + "duration": 0.143698, "exception": null, "id": "plot_2_task2", "output": "", @@ -2008,7 +2008,7 @@ "status": "SUCCEEDED" } ], - "duration": 0.279788, + "duration": 0.266575, "exception": null, "id": "autogen_report_for_task2", "output": "", @@ -2021,7 +2021,7 @@ "tasks": [ { "algorithm": "KISAO_0000019", - "duration": 0.240213, + "duration": 0.237241, "exception": null, "id": "task1", "output": "", @@ -2088,7 +2088,7 @@ }, { "algorithm": null, - "duration": 0.183423, + "duration": 0.17253, "exception": null, "id": "task2", "output": "", @@ -2105,9 +2105,9 @@ }, "vcell": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599ae09fa297efdca4d51c", - "download": "https://api.biosimulations.org/results/67599ae09fa297efdca4d51c/download", - "logs": "https://api.biosimulations.org/logs/67599ae09fa297efdca4d51c?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864fcd1f52f47f628b59e2", + "download": "https://api.biosimulations.org/results/67864fcd1f52f47f628b59e2/download", + "logs": "https://api.biosimulations.org/logs/67864fcd1f52f47f628b59e2?includeOutput=true", "log_yml": { "duration": 9, "exception": null, @@ -2464,11 +2464,11 @@ }, "xpp": { "response": 201, - "view": "https://api.biosimulations.org/runs/67599ae3c3054f763d585b3c", - "download": "https://api.biosimulations.org/results/67599ae3c3054f763d585b3c/download", - "logs": "https://api.biosimulations.org/logs/67599ae3c3054f763d585b3c?includeOutput=true", + "view": "https://api.biosimulations.org/runs/67864fcf167dc18b5b247948", + "download": "https://api.biosimulations.org/results/67864fcf167dc18b5b247948/download", + "logs": "https://api.biosimulations.org/logs/67864fcf167dc18b5b247948?includeOutput=true", "log_yml": { - "duration": 0.0681, + "duration": 0.048144, "exception": { "message": "No module named 'libsbml'", "type": "ModuleNotFoundError" diff --git a/BioModels/test_biomodels_compatibility_biosimulators.py b/BioModels/test_biomodels_compatibility_biosimulators.py index a75bb1a9..695c2953 100644 --- a/BioModels/test_biomodels_compatibility_biosimulators.py +++ b/BioModels/test_biomodels_compatibility_biosimulators.py @@ -165,7 +165,6 @@ def main(): print(f"Changed to {new_directory}") engine_ids = list(engines.keys()) - # engine_ids = engine_list if engine_list is not None else engine_ids test_folder = "tests" utils.run_biosimulators_remotely_and_locally( @@ -181,7 +180,7 @@ def main(): if __name__ == "__main__": - use_original_files = True + use_original_files = False biomodel_id_list = [ "BIOMD0000000001", "BIOMD0000000138", diff --git a/utils/__init__.py b/utils/__init__.py index 6f11dd51..4d900158 100644 --- a/utils/__init__.py +++ b/utils/__init__.py @@ -1608,7 +1608,7 @@ def create_combined_results_table( # Save the results to a Markdown file with utf-8 encoding path_to_results = os.path.join( - test_folder, "results_compatibility_biosimulators.md" + test_folder, f"results_{sedml_file_name.split('.')[0].replace(' ', '')}.md" ) print("Saving results to:", path_to_results) with open(path_to_results, "w", encoding="utf-8") as f: From 4b561d90e747696a9bd3eb5347245cd41e2cbd40 Mon Sep 17 00:00:00 2001 From: Stella <30465823+stellaprins@users.noreply.github.com> Date: Wed, 29 Jan 2025 10:27:58 +0000 Subject: [PATCH 9/9] Feat update readme (#116) * add egg info to gitignore * remove commented out code * draft readme * bugfix level_version tag process_test_suite * remove BIOMD files that should not be there * update READMEs * bugfix command line options overrule main script * pre-commit comment for developers * add back BIOMD models, they are needed in validate all sh * add forward slashes in filepaths, fix typos --- .gitignore | 1 + BioModels/parse_biomodels.py | 1 - ...t_biomodels_compatibility_biosimulators.py | 2 +- README.md | 123 +++++++++++++++++- test_suite/README.md | 49 ++++--- test_suite/process_test_suite.py | 5 +- ..._test_suite_compatibility_biosimulators.py | 9 +- 7 files changed, 153 insertions(+), 37 deletions(-) diff --git a/.gitignore b/.gitignore index 0b8437e8..f51cc53b 100644 --- a/.gitignore +++ b/.gitignore @@ -46,3 +46,4 @@ venv /SBML/.DS_Store /SBML/LEMS_NML2_Ex9_FN_missing_xmlns.omex /SBML/output +*.egg-info diff --git a/BioModels/parse_biomodels.py b/BioModels/parse_biomodels.py index ee434a6e..9270e766 100755 --- a/BioModels/parse_biomodels.py +++ b/BioModels/parse_biomodels.py @@ -353,5 +353,4 @@ def main(): if __name__ == "__main__": use_pickles = True - # model_id_n = 443 main() diff --git a/BioModels/test_biomodels_compatibility_biosimulators.py b/BioModels/test_biomodels_compatibility_biosimulators.py index 695c2953..ccdf6d0d 100644 --- a/BioModels/test_biomodels_compatibility_biosimulators.py +++ b/BioModels/test_biomodels_compatibility_biosimulators.py @@ -180,7 +180,7 @@ def main(): if __name__ == "__main__": - use_original_files = False + use_original_files = False # False allows you to tweak the SED-ML files before running. True overwrites the test files with the original BioModels files. biomodel_id_list = [ "BIOMD0000000001", "BIOMD0000000138", diff --git a/README.md b/README.md index 03f6ab14..c1255a28 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,125 @@ -# Converting NeuroML2/LEMS to & from SBML - +# SBML Showcase [![Continuous build using OMV](https://github.com/OpenSourceBrain/SBMLShowcase/actions/workflows/omv-ci.yml/badge.svg)](https://github.com/OpenSourceBrain/SBMLShowcase/actions/workflows/omv-ci.yml) [![Testing non OMV scripts](https://github.com/OpenSourceBrain/SBMLShowcase/actions/workflows/non-omv.yml/badge.svg)](https://github.com/OpenSourceBrain/SBMLShowcase/actions/workflows/non-omv.yml) +This repository contains files and instructions for testing validity of Systems Biology Markup Language (SBML) and Simulation Experiment Description Markup Language (SED-ML) files, and their compatibility with different simulations engines. + +## Results tables + +### SBML +- [LEMS_NML2_Ex9_FN](SBML/tests/results_compatibility_biosimulators.md) + +### BioModels +- [BioModels overview table](BioModels/README.md) +- [BIOMD0000000001](BioModels/BIOMD0000000001/tests/results_BIOMD0000000001_url.md) +- [BIOMD0000000138](BioModels/BIOMD0000000138/tests/results_BIOMD0000000138_url.md) +- [BIOMD0000000724](BioModels/BIOMD0000000724/tests/results_Theinmozhi_2018.md) +- [BIOMD0000001077](BioModels/BIOMD0000001077/tests/results_Adlung2021_model_jakstat_pa.md) + +### Test Suite +- [Test Suite overview table](test_suite/results.md) +- [00001](test_suite/test_00001/tests/results_compatibility_biosimulators.md) +- [01186](test_suite/test_01186/tests/results_compatibility_biosimulators.md) + +## Clone the Repository +To clone this repository to your local machine using the following command: + +```sh +git clone https://github.com/OpenSourceBrain/SBMLShowcase.git +cd SBMLShowcase +``` + +## Conda environment +To set up a conda environment for the code in the SBML, BioModels, and test_suite folders. +``` +conda create -n sbmlshowcase -c conda-forge python=3.10 +conda activate sbmlshowcase +pip install -e . +conda activate sbmlshowcase +``` +### for developers +``` +conda create -n sbmlshowcase-dev -c conda-forge python=3.10 +conda activate sbmlshowcase-dev +pip install -e .[dev] +conda activate sbmlshowcase-dev +``` +To install the pre-commit hooks +``` +pre-commit install +``` +## Main Folders + +The repository is organized into several folders each serving a specific purpose. Some of the key folders are: + +- [**SBML**](SBML) Contains scripts and files related to a few simple SBML models and testing their compatibility with different BioSimulator engines. +- [**BioModels**](BioModels) Includes scripts for parsing and testing the compatibility of [BioModels](https://www.ebi.ac.uk/biomodels/) with various BioSimulator engines. +- [**test_suite**](test_suite) Holds test cases and scripts for validating the functionality of the repository's tools and models. +- [**utils**](utils) containing general functions. + +## SBML +[**SBML**](SBML) contains a simple SBML model [`LEMS_NML2_Ex9_FN.sbml`](SBML/LEMS_NML2_Ex9_FN.sbml) and it's simulation file [`LEMS_NML2_Ex9_FN_missing_xmlns.sedml`](SBML/LEMS_NML2_Ex9_FN_missing_xmlns.sedml). + +[test_compatibility_biosimulators](SBML/tests/test_compatibility_biosimulators.py) adds any missing XML or FBC namespaces to the SED-ML file, wraps up the SBML and SED-ML files into an Open Modeling EXchange format (OMEX) file, submits the OMEX file to different BioSimulator engines either locally via docker (indicated with an `L` for local in the results table), or remotely through the BioSimulators API (indicated with an `R`). The results table created by this script can be found in [here](SBML/tests/results_compatibility_biosimulators.md). + +To run the script, change your directory to the SBML folder and run: + +``` +python test_compatibility_biosimulators.py +``` + +The following scripts test specific components of the process described above and are mainly run as workflows in GitHub Actions. +- [test_biosimulators_api](SBML/tests/test_biosimulators_api.py) +- [test_biosimulators_docker](SBML/tests/test_biosimulators_docker.py) +- [test_biosimulators_local](SBML/tests/test_biosimulators_local.py) +- [test_biosimulators_remote](SBML/tests/test_biosimulators_remote.py) +- [test_compatibility_biosimulators](SBML/tests/test_compatibility_biosimulators.py) +- [test_tellurium](SBML/tests/test_tellurium.py) + +## BioModels +### Overview with all curated BioModels + +[parse_biomodels](BioModels/parse_biomodels.py) creates an overview table in [`BioModels/README.md`](BioModels/README.md), testing curated [BioModels](https://www.ebi.ac.uk/biomodels/). + +To run the script, change your directory to the BioModels folder and run: + +``` +python parse_biomodels.py +``` +### Test specific BioModels +[test_biomodels_compatibility_biosimulators](BioModels/test_biomodels_compatibility_biosimulators.py) +tests engine compatibility of BioModels listed in `biomodel_id_list` ([BIOMD0000000001](https://www.ebi.ac.uk/biomodels/BIOMD0000000001), [BIOMD0000000138](https://www.ebi.ac.uk/biomodels/BIOMD0000000138), [BIOMD0000000724](https://www.ebi.ac.uk/biomodels/BIOMD0000000724), [BIOMD0000001077](https://www.ebi.ac.uk/biomodels/BIOMD0000001077)) and creates subfolders containing the results. Results can be found in `BioModels/BIOMOD_id/tests/results_BioModel_name.md`. + +For example for BioModel [BIOMD0000000001](https://www.ebi.ac.uk/biomodels/BIOMD0000000001), results can be found [here](BioModels/BIOMD0000000001/tests/results_BIOMD0000000001_url.md). + +## test_suite +### Overview with semantic test suite cases +Processes the [semantic](https://github.com/sbmlteam/sbml-test-suite/tree/release/cases/semantic) [SBML Test Suite](https://github.com/sbmlteam/sbml-test-suite?tab=readme-ov-file) test cases which should all be valid SBML models with deterministic simulation results. + +[process_test_suite](test_suite/process_test_suite.py) creates an overview table summarising whether the SBML files, SBML units, and SED-ML files are valid. In addition to that it shows whether the XML SBML namespaces (`xmlns-sbml`) are missing, and whether the models can be run (`pass` / `FAIL`) in tellurium natively, or remotely through the BioSimulators API. The table can be found [here](test_suite/results.md). + +To run the script, change your directory to the test_suite folder and run: + +``` +python process_test_suite.py +``` + +There are several command line options for testing a limited amount of cases or specific test suite cases, see the [test_suite README](test_suite/README.md) for more information. + + +### Testing specific test suite cases +[test_test_suite_compatibility_biosimulators](test_suite/test_test_suite_compatibility_biosimulators.py) tests engine compatibility of specific semantic test suite cases (00001, 01186) Results can be found in `test_suite/test_case_id/tests/results_compatibility_biosimulators.md`. + +For example for for semantic test case [00001](https://www.ebi.ac.uk/biomodels/BIOMD0000000001), results can be found [here](test_suite/test_00001/tests/results_compatibility_biosimulators.md). + +To run the script, change your directory to the test_suite folder and run: + +``` +python test_test_suite_compatibility_biosimulators.py +``` +There are several command line options in the [test_suite README](test_suite/README.md). + +# Converting NeuroML2/LEMS to & from SBML + Most of the interactions between [SBML](https://sbml.org) and LEMS/NeuroML showcased here are enabled by: - The SBML to LEMS import function in: [org.neuroml.importer](https://github.com/NeuroML/org.neuroml.import/blob/master/src/main/java/org/neuroml/importer/sbml/SBMLImporter.java) @@ -23,4 +141,3 @@ Note these features can be accessed easily with the [pyNeuroML](https://docs.neu pynml -sbml-import SBMLFile.sbml duration dt See also https://github.com/ModECI/modelspec/blob/main/examples/COMBINE.md. - diff --git a/test_suite/README.md b/test_suite/README.md index 6526fd78..835571af 100644 --- a/test_suite/README.md +++ b/test_suite/README.md @@ -9,57 +9,49 @@ It currently runs three validation tests: The output is a markdown file containing a simple table of the results obtained on each file, where each test result is recorded as either a `pass` or `FAIL`. -## Getting Started +## Run the Validation Script -### Step 1: Download the Test Suite -Download the [zipfile](https://github.com/sbmlteam/sbml-test-suite/releases/download/3.4.0/semantic_tests_with_sedml_and_graphs.v3.4.0.zip) (or the latest equivalent) of the [SBML test suite](https://github.com/sbmlteam/sbml-test-suite) that includes [SEDML](https://github.com/SED-ML/sed-ml) files. +Navigate to the test_suite directory and run for example -### Step 2: Extract the Files -Extract the downloaded ZIP file to a desired location, for example using the `unzip` command: - -```bash -unzip semantic_tests_with_sedml_and_graphs.v3.4.0.zip -d /path_to_extraction_folder ``` + python process_test_suite.py --cases 00001 00002 00011 --sbml-level_version l1v2 --output-file results_00001_00002_00011.md +``` +or to run all test cases using the highest SBML versions available navigate to the test_suite directory and run (overwrites `results.md`) -### Step 3: Set up the right environment ``` -pip install matplotlib -pip install pyneuroml -pip install pyneuroml[combine] -pip install pyneuroml[tellurium] -pip install pymetadata -pip install docker + python process_test_suite.py ``` +## Test specific cases +Navigate to the test_suite directory and run for example -### Step 3: Run the Validation Script -Navigate to the directory containing the `process_test_suite.py` script and execute it, specifying the path to the extracted test files. For example if the extraction folder is `C:\Users\Username\Documents\compbiolibs\SBML_test_suite\semantic` and the `process_test_suite.py` script is in the current directory. +``` +test_test_suite_compatibility_biosimulators.py --cases 00006 01280 --sbml-level_version highest +``` +or to run test cases 00001 and 01186 (tested in this repository) using the highest SBML versions available navigate to the test_suite directory and run ``` - python process_test_suite.py --suite-path C:\Users\Username\Documents\compbiolibs\SBML_test_suite\semantic --sbml-level_version 'sbml-l3v2' --output-file ./results_test.md --limit 5 +test_test_suite_compatibility_biosimulators.py ``` ## Command Line Options -The `process_test_suite.py` script provides various command-line options to customize the execution of the tests. Below are the available options. - - `--limit` **Description:** Limits the number of test cases processed. **Usage:** `--limit ` **Default:** `0` (no limit) - `--cases` - **Description:** list specific cases to process +- `--cases` + **Description:** List specific cases to process. **Usage:** `--cases ` **Default:** `[]` (no limit) - - `--suite-path` **Description:** Specifies the path to the directory containing the test suite files. **Usage:** `--suite-path ` **Default:** `.` (current directory) -- `--sbml-level_version' - **Description:** String that specifies level and version of files to select for processing (e.g. 'l3v2') +- `--sbml-level_version` + **Description:** String that specifies the level and version of files to select for processing (e.g., 'l3v2'). **Usage:** `--sbml-level_version ` **Default:** `highest` @@ -68,9 +60,14 @@ The `process_test_suite.py` script provides various command-line options to cust **Usage:** `--suite-url-base ` **Default:** `https://github.com/sbmlteam/sbml-test-suite/blob/release/cases/semantic` + ### process_test_suite only +- `--skip` + **Description:** Skip cases listed. + **Usage:** `--skip ` + **Default:** `[]` (no skip) + - `--output-file` **Description:** Specifies the path to the output file where the results will be written. **Usage:** `--output-file ` **Default:** `results.md` -Each option can be used to modify the behavior of the script to fit specific needs, such as limiting the number of cases to process for testing purposes or specifying a different output file for the results. diff --git a/test_suite/process_test_suite.py b/test_suite/process_test_suite.py index bbda8788..f242e0ac 100755 --- a/test_suite/process_test_suite.py +++ b/test_suite/process_test_suite.py @@ -431,7 +431,7 @@ def process_cases(args): ) sedml_file_path = ( glob.glob(sedml_file_name)[0] - if len(glob.glob(subfolder, sedml_file_name)) > 0 + if len(glob.glob(sedml_file_name)) > 0 else [] ) @@ -634,6 +634,7 @@ def run_test_suite_with_retries(max_retries=10): args.suite_path = os.path.join( os.path.dirname(os.path.realpath(__file__)), "SBML_test_suite", "semantic" ) - args.limit = 0 + if len(sys.argv) == 1: + args.limit = 0 run_test_suite_with_retries() diff --git a/test_suite/test_test_suite_compatibility_biosimulators.py b/test_suite/test_test_suite_compatibility_biosimulators.py index 6b1919cd..3e565228 100644 --- a/test_suite/test_test_suite_compatibility_biosimulators.py +++ b/test_suite/test_test_suite_compatibility_biosimulators.py @@ -186,10 +186,11 @@ def process_cases(args): if __name__ == "__main__": args = parse_arguments() - args.cases = ["00001", "01186"] - args.sbml_level_version = "l3v2" - user_folder = os.path.expanduser("~") + if len(sys.argv) == 1: + # No command line arguments provided, set default values + args.cases = ["00001", "01186"] + args.sbml_level_version = "highest" args.suite_path = os.path.join( - user_folder, "Documents", "compbiolibs", "SBML_test_suite", "semantic" + os.path.dirname(os.path.realpath(__file__)), "SBML_test_suite", "semantic" ) process_cases(args)