LEMS_singleCompAllChans.xml

<?xml version="1.0"?>
<Lems xmlns="http://www.neuroml.org/lems/0.7.2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/lems/0.7.2  https://raw.github.com/LEMS/LEMS/development/Schemas/LEMS/LEMS_v0.7.2.xsd">

  <Target component="sim1" reportFile="simulator.props" timesFile="time.dat"/>

  <!--Include standard NeuroML 2 ComponentType definitions-->
  <Include file="Cells.xml"/>
  <Include file="Networks.xml"/>
  <Include file="Simulation.xml"/>
  <!-- Channel/synapse files-->
  <Include file="na.channel.nml"/>
  <Include file="km.channel.nml"/>
  <Include file="kv.channel.nml"/>
  <Include file="ca.channel.nml"/>
  <Include file="kca.channel.nml"/>
  <Include file="it.channel.nml"/>
  <Include file="pas.channel.nml"/>
  <!--   Cell files-->
  <Include file="singleCompAllChans.cell.nml"/>
  <!--   Network file-->
  <Include file="singleCompAllChans.net.nml"/>
  <!--Note: this could be: Simulation id="sim1" ... , but Component type="Simulation" ...
  is used to allow validation of this file according to the LEMS schema specified above...-->
  <Component type="Simulation" id="sim1" length="600ms" step="0.001 ms" target="net">

    <Display id="" title="v"  xmin="0" xmax="600" ymin="-100.0" ymax="100" timeScale="1ms">
      <Line id="VOLTAGE" timeScale="1ms" quantity="pop0/0/cell/v" scale="1 mV" color="#000000"/>
    </Display>
    <Display id="d2" title="Ca current density (uA_per_cm2)" timeScale="1ms" xmin="0" xmax="600" ymin="0" ymax="3">
      <Line id="Ca iDensity" quantity="pop0/0/cell/biophys/membraneProperties/ca_all/iDensity" scale="1uA_per_cm2"  color="#00ff00" timeScale="1ms"/>
    </Display>
    <Display id="d3" title="Internal Ca concentration (mM)" timeScale="1ms" xmin="0" xmax="600" ymin="0" ymax="30">
      <Line id="caConc" quantity="pop0/0/cell/caConc" scale="1e-6 mM"  color="#ff0000" timeScale="1ms"/>
    </Display>
    <OutputFile id="outf" fileName="jlems_sccct.dat">
      <OutputColumn id="v" quantity="pop0/0/cell/v"/>
      <OutputColumn id="ca" quantity="pop0/0/cell/caConc"/>
      <OutputColumn id="ica" quantity="pop0/0/cell/biophys/membraneProperties/ca_all/iDensity"/>
      <!-- <OutputColumn id="m_x" quantity="pop0/0/cell/biophys/membraneProperties/x_all/x/m/q"/> -->
    </OutputFile>
  </Component>
</Lems>