CHANGELOG

Version 1.1-3 [July 2024]
* bcp had to be removed, because it is no longer available on CRAN
* error fixes for complains in classes
* smaller Fixes
* JOSS paper added as reference https://joss.theoj.org/papers/10.21105/joss.04407

Version 1.1-2 [May 2021]
* removed the reduntant run_pcredux function
* exchanged deprecated unittest functions
* fix PCRedux/R/pcrfit_single.R’: if (length(res_amptester) != 1 && class(res_amptester) == "amptest") ...

Version 1.1 [March 2021]
* cran-comments.md added
* make sure in examples that we do not change the user's options, par or working directory
* grammar & spelling improved
* added \value to .Rd files regarding exported methods and explain the functions results in the documentation

Version 1.0-7 [September 2020]
* Various bug fixes in data
* Various bug fixes in pcrfit_single() and mblrr()

Version 1.0-7 [October 2020]
* Fix fields
* bug fixes
* activation of further features

Version 1.0-6 [March 2020]
* Fix Date field

Version 1.0-5 [March 2020]
* Fixes for 1.0.0

Version 1.0-4 [December 2019]
* Fixes for 1.0.0
* autocorrelation_test reworked to provide more standard output

Version 1.0-3 [October 2019]
* Fix for pcrfit_single() function
* Improved documentation
* kbqPCR amplification curve and decisions added

Version 1.0-1 [October 2019]
this release is the first stable (feature complete) release, which mainly received bugfixes addressing minor issues raised by users and us
* Due to changes in R, the minumum requirement now is R >= 3.5.0
* vignette improved
* winklR() and run_PCRedux() (Graphical Userinterface) function added
* decision_modus now deals with ties, reports inconclusive results as missing value (NA)
* visdat_pcrfit() removed, since there are other packages that can do the job better (e.g., 10.21105/joss.00355)
* several further dependencies removed to make the installation easier

Version 0.2.6-4 [October 2018]
* make autocorrelation_test more robust
* Improved documentation
* More examples
* rules for pcrfit_single improved
* grammar and spelling
* changepoint_bcp and changepoint_e.agglo renamed to cp_bcp and cp_e.agglo
* hookreg and hookregNL are peer-reviewed now (https://doi.org/10.1016/j.bdq.2018.08.001)

Version 0.2.6-1 [June 2018]
* Fix for qpcR package
* Improved documentation

Version 0.2.6 [May 2018]
* Largely extended documentation
* New feature in pcrfit_single ("take down point")
* Curated classifications
* Unit tests for encu
* New amplification curve data set (thanks Roy-Arne)
* Improved performR (thanks to vondoRishi)
* added Maximal Information Coefficient as feature
* added slope, intercept and number of iterations as additional features
* new function tReem
* pcrfit_single (encu) tests from now on l4, l5, l6 and l7 models only (-> faster analysis)
* most outputs no longer reports NAs if nothing could be calculated but extreme values
* more examples and improved vignette
* improved change point testing be using the derivative instead of the amplification curve
* removed drc dependency
* feature resLRE removed (no significant difference between positive and negative curves)

Version 0.2.5-1 [November 2017]
* improvements to documentation
* DESCRIPTION adjusted to CRAN requirements

First CRAN version 0.2.5 [November 2017]
* further bug fixes
* GPL3 -> MIT
* Submission to CRAN
* added data set for 32HCU VideoScan

Version 0.2.3 [November 2017]
* further bug fixes

Version 0.2.2 [November 2017]
* further improvements on the documentation and bug fixes

Version 0.2.1 [November 2017]
* pcrfit_parallel was unreliably working on Windows -> was removed
* encu function (quasi substitute for pcrfit_parallel) was added
* visdat_pcrfit_prarallel was renamed to visdat_pcrfit
* further improvements on the documentation and bug fixes

First stabilized version 0.1.0 [October 2017]
* Bug fixing
* added testing
* adding of data
* improvement of documentation

First version 0.0.1 [August - September 2017]
* created package
* added the functions
* added the data sets