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Payne-Wang / RNAseq-pipline Public

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RNAseq-pipline

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step0.environment.sh

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RNAseq-pipline

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step0.environment.sh

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10 lines (10 loc) · 337 Bytes

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#!/bin/bash

#定义变量

wk_dir=/home/whq/Desktop/yangcf_RNAseq/210527_A00399_0283_AH3WKKDSX2/RNA-seq_analysis

code_dir=$wk_dir/code

fastq_dir=$wk_dir/fastq

index=$wk_dir/index/mmu.fa

genome=$wk_dir/genome/Mus_musculus_Ensemble_94.fa

gtf=$wk_dir/genome/Mus_musculus_Ensemble_94.gtf

fastq1_suffix=.R1.fastq.gz

fastq2_suffix=.R2.fastq.gz

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