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Differentiate between model output and postprocessing output #6724

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wyli opened this issue Jul 14, 2023 · 1 comment
Open
1 of 3 tasks

Differentiate between model output and postprocessing output #6724

wyli opened this issue Jul 14, 2023 · 1 comment
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@wyli
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wyli commented Jul 14, 2023

The metadata states what the network produces as its output but if the postprocessing transform sequence does a lot to change the shape and format of this output there will be a disconnect between what is expected and the actual results. One example is a bundle which produces a certain number of channels that don't directly relate to classes which is then transformed into an output with a different number of layers representing one-hot encoded multiclass labels

  • update spec
  • update existing bundles output spec (model zoo)
  • downstream app. (monai label) reading output spec for bundle validation
@wyli wyli converted this from a draft issue Jul 14, 2023
@wyli wyli removed this from MONAI v1.3 Oct 13, 2023
@wyli wyli added this to MONAI v1.4 Oct 13, 2023
@wyli wyli moved this to Todo in MONAI v1.4 Oct 13, 2023
@wyli wyli removed the status in MONAI v1.4 Nov 3, 2023
@KumoLiu KumoLiu moved this to Todo in MONAI v1.4 Dec 1, 2023
@ericspod ericspod self-assigned this Sep 10, 2024
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We have updated the schema to support this, there are a few bundles which should be changed to reflect this difference, but also MONAILabel and other tools require some changes to correctly pick up which result they expect.

@KumoLiu KumoLiu removed this from MONAI v1.4 Sep 20, 2024
@KumoLiu KumoLiu moved this to In progress in MONAI v1.5 Sep 20, 2024
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