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@boasvdp boasvdp released this 28 Mar 08:23
· 49 commits to master since this release
v0.0.1
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Learn about vigilant mode.

Juno-SNP is a toolkit for performing SNP comparison based on a set of reads and assemblies (e.g. Juno-assembly output).

Features include:

  • Snippy mapping, generation of a SNP matrix and inference of UPGMA and ML trees
  • Preclustering using mash: this ensures divergent samples are not mapped to a single references, but are split into several clusters
  • Provide your own reference genome or let referenceseeker choose one for you.
  • Dependencies are managed using conda. Singularity support will be restored later.
  • Generation of an audit trail
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