You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
# For running on an interactive session on cybertron with singularity module loaded
nextflow run -c 'conf/seattlechildrens.config' \
nf-core/rnaseq \
-r 3.14.0 \
-profile test,local_singularity \
--outdir "/home/$USER/temp/nf-core-rnaseq-test" \
--project "207f23bf-acb6-4835-8bfe-142436acb58c"
# For executing the jobs on the HPC cluster with singularity containers
# doesn't work due to bioconductor-dupradar:1.28.0--r42hdfd78af_0
nextflow run -c 'conf/seattlechildrens.config' \
nf-core/rnaseq \
-r 3.14.0 \
-profile test,PBS_singularity \
--max_memory 32.GB \
--outdir "/home/$USER/temp/nf-core-rnaseq-test" \
--project "207f23bf-acb6-4835-8bfe-142436acb58c"
The text was updated successfully, but these errors were encountered:
On HPC, cannot pull dupradar from repository.
Error:
singularity pull
exit code 143
To Reproduce:
The text was updated successfully, but these errors were encountered: