From cb54bd04ca1721ac4a582e34b0d791e4d1109bbf Mon Sep 17 00:00:00 2001
From: Pablo Iturrieta <69042881+pabloitu@users.noreply.github.com>
Date: Tue, 30 May 2023 18:01:44 +0200
Subject: [PATCH] dev: uses now mamba to build actions environment. (#228)

build: removed developer and testing dependencies from YML and requirements.txt, but specified them in requirements_dev.txt
---
 .github/workflows/build-sphinx-no-deploy.yml | 19 ++++----
 .github/workflows/build-sphinx.yml           | 19 ++++----
 .github/workflows/build-test.yml             | 47 +++++++++-----------
 requirements.txt                             |  7 ---
 requirements.yml                             |  6 ---
 requirements_dev.txt                         | 18 ++++++++
 6 files changed, 57 insertions(+), 59 deletions(-)
 create mode 100644 requirements_dev.txt

diff --git a/.github/workflows/build-sphinx-no-deploy.yml b/.github/workflows/build-sphinx-no-deploy.yml
index f669c541..1146d029 100644
--- a/.github/workflows/build-sphinx-no-deploy.yml
+++ b/.github/workflows/build-sphinx-no-deploy.yml
@@ -13,17 +13,16 @@ jobs:
 
     steps:
       - uses: actions/checkout@v2
-      - uses: conda-incubator/setup-miniconda@v2
+      - uses: mamba-org/setup-micromamba@v1
         with:
-          python-version: '3.10'
-          activate-environment: csep-dev
-          channels: conda-forge
-
-      - name: Install dependencies
-        run: |
-          conda env update --file requirements.yml
-          conda info -a
-          conda list
+          generate-run-shell: true
+          environment-file: requirements.yml
+          create-args: >-
+            python=3.10
+            pillow
+            sphinx
+            sphinx-gallery
+            sphinx-rtd-theme
 
       - name: Install pyCSEP
         run: |
diff --git a/.github/workflows/build-sphinx.yml b/.github/workflows/build-sphinx.yml
index cc4544e0..a6549be2 100644
--- a/.github/workflows/build-sphinx.yml
+++ b/.github/workflows/build-sphinx.yml
@@ -13,17 +13,16 @@ jobs:
 
     steps:
       - uses: actions/checkout@v2
-      - uses: conda-incubator/setup-miniconda@v2
+      - uses: mamba-org/setup-micromamba@v1
         with:
-          python-version: '3.10'
-          activate-environment: csep-dev
-          channels: conda-forge
-
-      - name: Install dependencies
-        run: |
-          conda env update --file requirements.yml
-          conda info -a
-          conda list
+          generate-run-shell: true
+          environment-file: requirements.yml
+          create-args: >-
+            python=3.10
+            pillow
+            sphinx
+            sphinx-gallery
+            sphinx-rtd-theme
 
       - name: Install pyCSEP
         run: |
diff --git a/.github/workflows/build-test.yml b/.github/workflows/build-test.yml
index 6033a18f..289f6a14 100644
--- a/.github/workflows/build-test.yml
+++ b/.github/workflows/build-test.yml
@@ -3,12 +3,12 @@ name: tests
 on:
   push:
     branches-ignore:
-    - 'v*'
+      - 'v*'
   pull_request:
 
 jobs:
   build:
-    if: github.repository == 'SCECCode/pycsep'
+    if: github.repository == 'SCECcode/pycsep'
     runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
@@ -20,30 +20,25 @@ jobs:
         shell: bash -l {0}
 
     steps:
-    - uses: actions/checkout@v2
-    - uses: conda-incubator/setup-miniconda@v2
-      with:
-        python-version: ${{ matrix.python-version }}
-        activate-environment: csep-dev
-        channels: conda-forge
+      - uses: actions/checkout@v2
+      - uses: mamba-org/setup-micromamba@v1
+        with:
+          generate-run-shell: true
+          environment-file: requirements.yml
+          create-args: >-
+            python=${{ matrix.python-version }}
 
-    - name: Install dependencies
-      run: |
-        conda env update --file requirements.yml
-        conda info -a
-        conda list
+      - name: Install pyCSEP
+        run: |
+          pip install --no-deps -e .
+          python -c "import csep; print('Version: ', csep.__version__)"
 
-    - name: Install pyCSEP
-      run: |
-        pip install --no-deps -e .
-        python -c "import csep; print('Version: ', csep.__version__)"
+      - name: Test with pytest
+        run: |
+          pip install vcrpy==4.3.1 pytest pytest-cov
+          pytest --cov=./ --cov-config=.coveragerc
 
-    - name: Test with pytest
-      run: |
-        conda install pytest-cov
-        pytest --cov=./ --cov-config=.coveragerc
-
-    - name: Upload coverage
-      if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.10'
-      run: |
-        bash <(curl -s https://codecov.io/bash) || echo 'Codecov failed to upload'
+      - name: Upload coverage
+        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.10'
+        run: |
+          bash <(curl -s https://codecov.io/bash) || echo 'Codecov failed to upload'
diff --git a/requirements.txt b/requirements.txt
index 6a95af5b..df3845be 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -6,13 +6,6 @@ cartopy
 obspy
 pyproj
 python-dateutil
-pytest
-vcrpy
-pytest-cov
 shapely
-sphinx
-sphinx-gallery
-sphinx-rtd-theme
-pillow
 mercantile
 
diff --git a/requirements.yml b/requirements.yml
index 14caee7e..be2fd220 100644
--- a/requirements.yml
+++ b/requirements.yml
@@ -11,13 +11,7 @@ dependencies:
   - pyproj
   - obspy
   - python-dateutil
-  - pytest
   - cartopy
   - shapely
-  - sphinx
-  - sphinx-gallery
-  - sphinx_rtd_theme
-  - pillow
-  - vcrpy
   - mercantile
 
diff --git a/requirements_dev.txt b/requirements_dev.txt
new file mode 100644
index 00000000..6a95af5b
--- /dev/null
+++ b/requirements_dev.txt
@@ -0,0 +1,18 @@
+numpy
+scipy
+pandas
+matplotlib
+cartopy
+obspy
+pyproj
+python-dateutil
+pytest
+vcrpy
+pytest-cov
+shapely
+sphinx
+sphinx-gallery
+sphinx-rtd-theme
+pillow
+mercantile
+