You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi,
First of all, thanks a lot for shinycell ! It has made my life a lot easier in terms of sharing my sc analyses...
I am trying to buid an app for a seurat objet that has been integrated using harmony and it seems to fail loading the umap reduction coordinetes properly:
I have tried the following:
Hi,
First of all, thanks a lot for shinycell ! It has made my life a lot easier in terms of sharing my sc analyses...
I am trying to buid an app for a seurat objet that has been integrated using harmony and it seems to fail loading the umap reduction coordinetes properly:
I have tried the following:
Projection <- as.data.frame(seu@reductions$[email protected])
UMAP_1 <- as.data.frame(Projection$UMAP_1)
rownames(UMAP_1) <- colnames(seu)
UMAP_2 <- as.data.frame(Projection$UMAP_2)
rownames(UMAP_2) <- colnames(seu)
makeShinyFiles(seu, scConf1, gex.assay = "RNA", gex.slot = "data",
gene.mapping = TRUE, shiny.prefix = "sc1",
shiny.dir = "shinyAppMulti/",
default.gene1 = "Acta2", default.gene2 = "Upk3a",
default.multigene = c("Vim","Krt5","Tnnt2","Acta1","Rgs5","Tesc"),
default.dimred = c("UMAP_1", "UMAP_2"))
But it still gives the same error...
Thanks a lot in advance !
Best,
Jaime.
The text was updated successfully, but these errors were encountered: