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Error when importing de #143

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lte678 opened this issue Oct 9, 2024 · 5 comments
Closed

Error when importing de #143

lte678 opened this issue Oct 9, 2024 · 5 comments
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bug Something isn't working

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@lte678
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lte678 commented Oct 9, 2024 •
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The bug 🐞

On the line from diffeqpy import de, an error occurs, much like issue #135
The error message is slightly different to #135 , but I am not certain that it implies a different underlying problem. Either way, afaik these package versions should not be affected by the issue at all.

Traceback (most recent call last):
  File "/home/lteichro/Projects/ni-coils/test.py", line 1, in <module>
    from diffeqpy import de
  File "/home/lteichro/Projects/ni-coils/venv/lib/python3.12/site-packages/diffeqpy/de.py", line 5, in <module>
    de.jit = Main.seval("jit(x) = typeof(x).name.wrapper(ModelingToolkit.complete(ModelingToolkit.modelingtoolkitize(x)), x.u0, x.tspan, x.p)") # kinda hackey
    ^^^^^^
  File "/home/lteichro/.julia/packages/PythonCall/Nr75f/src/JlWrap/any.jl", line 254, in __setattr__
    self._jl_callmethod($(pyjl_methodnum(pyjlany_setattr)), k, v)
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: Julia: Global DifferentialEquations.jit does not exist and cannot be assigned. Declare it using `global` before attempting assignment.

I know that the issue appeared due to an external change sometime in the last 6 days, since a runner that last worked then does not now when repeating the job. The python version for that runner is compiled from a source blob that did not change.

The issue is resolved temporarily by removing the two de.jit = assignments in de.py.

Environment:

  • Output of using Pkg; Pkg.status()
(@diffeqpy) pkg> st
Status `~/.julia/environments/diffeqpy/Project.toml`
  [0c46a032] DifferentialEquations v7.14.0
  [961ee093] ModelingToolkit v9.43.0
  [6099a3de] PythonCall v0.9.23
  • Output of using Pkg; Pkg.status(; mode = PKGMODE_MANIFEST)
Status `~/.julia/environments/diffeqpy/Manifest.toml`
  [47edcb42] ADTypes v1.9.0
  [1520ce14] AbstractTrees v0.4.5
  [7d9f7c33] Accessors v0.1.38
  [79e6a3ab] Adapt v4.0.4
  [66dad0bd] AliasTables v1.1.3
  [ec485272] ArnoldiMethod v0.4.0
  [4fba245c] ArrayInterface v7.16.0
  [4c555306] ArrayLayouts v1.10.3
  [aae01518] BandedMatrices v1.7.5
  [e2ed5e7c] Bijections v0.1.9
  [62783981] BitTwiddlingConvenienceFunctions v0.1.6
  [8e7c35d0] BlockArrays v1.1.1
  [764a87c0] BoundaryValueDiffEq v5.10.0
  [fa961155] CEnum v0.5.0
  [2a0fbf3d] CPUSummary v0.2.6
  [00ebfdb7] CSTParser v3.4.3
  [d360d2e6] ChainRulesCore v1.25.0
  [fb6a15b2] CloseOpenIntervals v0.1.13
  [861a8166] Combinatorics v1.0.2
  [a80b9123] CommonMark v0.8.15
  [38540f10] CommonSolve v0.2.4
  [bbf7d656] CommonSubexpressions v0.3.1
  [f70d9fcc] CommonWorldInvalidations v1.0.0
  [34da2185] Compat v4.16.0
  [b152e2b5] CompositeTypes v0.1.4
  [a33af91c] CompositionsBase v0.1.2
  [2569d6c7] ConcreteStructs v0.2.3
  [992eb4ea] CondaPkg v0.2.23
  [187b0558] ConstructionBase v1.5.8
  [adafc99b] CpuId v0.3.1
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.18.20
  [e2d170a0] DataValueInterfaces v1.0.0
  [bcd4f6db] DelayDiffEq v5.48.1
  [2b5f629d] DiffEqBase v6.157.0
⌅ [459566f4] DiffEqCallbacks v3.9.1
  [77a26b50] DiffEqNoiseProcess v5.23.0
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [0c46a032] DifferentialEquations v7.14.0
  [a0c0ee7d] DifferentiationInterface v0.6.7
  [8d63f2c5] DispatchDoctor v0.4.15
  [b4f34e82] Distances v0.10.11
  [31c24e10] Distributions v0.25.112
  [ffbed154] DocStringExtensions v0.9.3
  [5b8099bc] DomainSets v0.7.14
  [7c1d4256] DynamicPolynomials v0.6.0
  [06fc5a27] DynamicQuantities v1.1.0
  [4e289a0a] EnumX v1.0.4
  [f151be2c] EnzymeCore v0.8.4
  [d4d017d3] ExponentialUtilities v1.26.1
  [e2ba6199] ExprTools v0.1.10
⌅ [6b7a57c9] Expronicon v0.8.5
  [9d29842c] FastAlmostBandedMatrices v0.1.4
  [7034ab61] FastBroadcast v0.3.5
  [9aa1b823] FastClosures v0.3.2
  [29a986be] FastLapackInterface v2.0.4
  [1a297f60] FillArrays v1.13.0
  [64ca27bc] FindFirstFunctions v1.4.1
  [6a86dc24] FiniteDiff v2.26.0
  [1fa38f19] Format v1.3.7
  [f6369f11] ForwardDiff v0.10.36
  [069b7b12] FunctionWrappers v1.1.3
  [77dc65aa] FunctionWrappersWrappers v0.1.3
  [d9f16b24] Functors v0.4.12
  [46192b85] GPUArraysCore v0.1.6
  [c145ed77] GenericSchur v0.5.4
  [c27321d9] Glob v1.3.1
  [86223c79] Graphs v1.12.0
  [3e5b6fbb] HostCPUFeatures v0.1.17
  [34004b35] HypergeometricFunctions v0.3.24
  [615f187c] IfElse v0.1.1
  [d25df0c9] Inflate v0.1.5
  [18e54dd8] IntegerMathUtils v0.1.2
  [8197267c] IntervalSets v0.7.10
  [3587e190] InverseFunctions v0.1.17
  [92d709cd] IrrationalConstants v0.2.2
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.6.0
  [0f8b85d8] JSON3 v1.14.0
  [98e50ef6] JuliaFormatter v1.0.61
  [ccbc3e58] JumpProcesses v9.13.7
  [ef3ab10e] KLU v0.6.0
  [ba0b0d4f] Krylov v0.9.6
  [b964fa9f] LaTeXStrings v1.3.1
⌅ [984bce1d] LambertW v0.4.6
  [23fbe1c1] Latexify v0.16.5
  [10f19ff3] LayoutPointers v0.1.17
  [5078a376] LazyArrays v2.2.1
  [2d8b4e74] LevyArea v1.0.0
  [87fe0de2] LineSearch v0.1.3
  [d3d80556] LineSearches v7.3.0
  [7ed4a6bd] LinearSolve v2.35.0
  [2ab3a3ac] LogExpFunctions v0.3.28
  [bdcacae8] LoopVectorization v0.12.171
  [d8e11817] MLStyle v0.4.17
  [1914dd2f] MacroTools v0.5.13
  [d125e4d3] ManualMemory v0.1.8
  [a3b82374] MatrixFactorizations v3.0.1
  [bb5d69b7] MaybeInplace v0.1.4
  [0b3b1443] MicroMamba v0.1.14
  [e1d29d7a] Missings v1.2.0
  [961ee093] ModelingToolkit v9.43.0
  [46d2c3a1] MuladdMacro v0.2.4
  [102ac46a] MultivariatePolynomials v0.5.6
  [d8a4904e] MutableArithmetics v1.5.0
  [d41bc354] NLSolversBase v7.8.3
  [2774e3e8] NLsolve v4.5.1
  [77ba4419] NaNMath v1.0.2
  [8913a72c] NonlinearSolve v3.15.1
  [6fe1bfb0] OffsetArrays v1.14.1
  [429524aa] Optim v1.9.4
  [bac558e1] OrderedCollections v1.6.3
  [1dea7af3] OrdinaryDiffEq v6.89.0
  [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.1.0
  [6ad6398a] OrdinaryDiffEqBDF v1.1.2
  [bbf590c4] OrdinaryDiffEqCore v1.7.0
  [50262376] OrdinaryDiffEqDefault v1.1.0
  [4302a76b] OrdinaryDiffEqDifferentiation v1.1.0
  [9286f039] OrdinaryDiffEqExplicitRK v1.1.0
  [e0540318] OrdinaryDiffEqExponentialRK v1.1.0
  [becaefa8] OrdinaryDiffEqExtrapolation v1.1.0
  [5960d6e9] OrdinaryDiffEqFIRK v1.1.1
  [101fe9f7] OrdinaryDiffEqFeagin v1.1.0
  [d3585ca7] OrdinaryDiffEqFunctionMap v1.1.1
  [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.1.0
  [9f002381] OrdinaryDiffEqIMEXMultistep v1.1.0
  [521117fe] OrdinaryDiffEqLinear v1.1.0
  [1344f307] OrdinaryDiffEqLowOrderRK v1.2.0
  [b0944070] OrdinaryDiffEqLowStorageRK v1.2.1
  [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.2.1
  [c9986a66] OrdinaryDiffEqNordsieck v1.1.0
  [5dd0a6cf] OrdinaryDiffEqPDIRK v1.1.0
  [5b33eab2] OrdinaryDiffEqPRK v1.1.0
  [04162be5] OrdinaryDiffEqQPRK v1.1.0
  [af6ede74] OrdinaryDiffEqRKN v1.1.0
  [43230ef6] OrdinaryDiffEqRosenbrock v1.2.0
  [2d112036] OrdinaryDiffEqSDIRK v1.1.0
  [669c94d9] OrdinaryDiffEqSSPRK v1.2.0
  [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.1.0
  [358294b1] OrdinaryDiffEqStabilizedRK v1.1.0
  [fa646aed] OrdinaryDiffEqSymplecticRK v1.1.0
  [b1df2697] OrdinaryDiffEqTsit5 v1.1.0
  [79d7bb75] OrdinaryDiffEqVerner v1.1.1
  [90014a1f] PDMats v0.11.31
  [65ce6f38] PackageExtensionCompat v1.0.2
  [d96e819e] Parameters v0.12.3
  [69de0a69] Parsers v2.8.1
  [fa939f87] Pidfile v1.3.0
  [e409e4f3] PoissonRandom v0.4.4
  [f517fe37] Polyester v0.7.16
  [1d0040c9] PolyesterWeave v0.2.2
  [85a6dd25] PositiveFactorizations v0.2.4
  [d236fae5] PreallocationTools v0.4.24
  [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [27ebfcd6] Primes v0.5.6
  [43287f4e] PtrArrays v1.2.1
  [6099a3de] PythonCall v0.9.23
  [1fd47b50] QuadGK v2.11.1
  [74087812] Random123 v1.7.0
  [e6cf234a] RandomNumbers v1.6.0
  [3cdcf5f2] RecipesBase v1.3.4
  [731186ca] RecursiveArrayTools v3.27.0
  [f2c3362d] RecursiveFactorization v0.2.23
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.0
  [ae5879a3] ResettableStacks v1.1.1
  [79098fc4] Rmath v0.8.0
  [7e49a35a] RuntimeGeneratedFunctions v0.5.13
  [94e857df] SIMDTypes v0.1.0
  [476501e8] SLEEFPirates v0.6.43
  [0bca4576] SciMLBase v2.56.1
  [19f34311] SciMLJacobianOperators v0.1.0
  [c0aeaf25] SciMLOperators v0.3.10
  [53ae85a6] SciMLStructures v1.5.0
  [6c6a2e73] Scratch v1.2.1
  [efcf1570] Setfield v1.1.1
  [727e6d20] SimpleNonlinearSolve v1.12.3
  [699a6c99] SimpleTraits v0.9.4
  [ce78b400] SimpleUnPack v1.1.0
  [a2af1166] SortingAlgorithms v1.2.1
  [9f842d2f] SparseConnectivityTracer v0.6.6
  [47a9eef4] SparseDiffTools v2.22.0
  [0a514795] SparseMatrixColorings v0.4.6
  [e56a9233] Sparspak v0.3.9
  [276daf66] SpecialFunctions v2.4.0
  [aedffcd0] Static v1.1.1
  [0d7ed370] StaticArrayInterface v1.8.0
  [90137ffa] StaticArrays v1.9.7
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.3
  [4c63d2b9] StatsFuns v1.3.2
  [9672c7b4] SteadyStateDiffEq v2.4.1
  [789caeaf] StochasticDiffEq v6.69.1
  [7792a7ef] StrideArraysCore v0.5.7
  [856f2bd8] StructTypes v1.11.0
  [c3572dad] Sundials v4.25.0
  [2efcf032] SymbolicIndexingInterface v0.3.31
  [19f23fe9] SymbolicLimits v0.2.2
  [d1185830] SymbolicUtils v3.7.1
  [0c5d862f] Symbolics v6.13.1
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
  [8ea1fca8] TermInterface v2.0.0
  [1c621080] TestItems v1.0.0
  [8290d209] ThreadingUtilities v0.5.2
⌃ [a759f4b9] TimerOutputs v0.5.24
  [0796e94c] Tokenize v0.5.29
  [d5829a12] TriangularSolve v0.2.1
  [410a4b4d] Tricks v0.1.9
  [781d530d] TruncatedStacktraces v1.4.0
  [5c2747f8] URIs v1.5.1
  [3a884ed6] UnPack v1.0.2
  [1986cc42] Unitful v1.21.0
  [a7c27f48] Unityper v0.1.6
  [e17b2a0c] UnsafePointers v1.0.0
  [3d5dd08c] VectorizationBase v0.21.70
  [19fa3120] VertexSafeGraphs v0.2.0
  [1d5cc7b8] IntelOpenMP_jll v2024.2.1+0
  [856f044c] MKL_jll v2024.2.0+0
  [efe28fd5] OpenSpecFun_jll v0.5.5+0
  [f50d1b31] Rmath_jll v0.5.1+0
⌅ [fb77eaff] Sundials_jll v5.2.3+0
  [f8abcde7] micromamba_jll v1.5.8+0
  [1317d2d5] oneTBB_jll v2021.12.0+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.7.2+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [4536629a] OpenBLAS_jll v0.3.27+1
  [05823500] OpenLibm_jll v0.8.1+2
  [bea87d4a] SuiteSparse_jll v7.7.0+0
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2
julia> versioninfo()
Julia Version 1.11.0
Commit 501a4f25c2b (2024-10-07 11:40 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
  CPU: 24 × 13th Gen Intel(R) Core(TM) i7-13700K
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, alderlake)
Threads: 1 default, 0 interactive, 1 GC (on 24 virtual cores)
$ python --version
Python 3.12.3
$ pip freeze
attrs==24.2.0
certifi==2024.8.30
charset-normalizer==3.4.0
diffeqpy==2.4.1
fire==0.5.0
idna==3.10
jill==0.11.5
jsonschema==4.23.0
jsonschema-specifications==2024.10.1
juliacall==0.9.23
juliapkg==0.1.13
python-gnupg==0.5.3
referencing==0.35.1
requests==2.32.3
requests-futures==1.0.1
rpds-py==0.20.0
semantic-version==2.10.0
semver==3.0.2
six==1.16.0
termcolor==2.5.0
urllib3==2.2.3
wget==3.2

Full execution log showing environment installation and error

(testvenv) [~/Projects]$ python ni-coils/test.py
[juliapkg] Found dependencies: /home/lteichro/Projects/testvenv/lib/python3.12/site-packages/juliacall/juliapkg.json
[juliapkg] Found dependencies: /home/lteichro/Projects/testvenv/lib/python3.12/site-packages/juliapkg/juliapkg.json
[juliapkg] Locating Julia ~1.6.1, ~1.7, ~1.8, ~1.9, =1.10.0, ^1.10.3
[juliapkg] Installing Julia 1.11.0 using JuliaUp
[juliapkg] Using Julia 1.11.0 at /home/lteichro/.julia/juliaup/julia-1.11.0+0.x64.linux.gnu/bin/julia
[juliapkg] Using Julia project at /home/lteichro/Projects/testvenv/julia_env
[juliapkg] Installing packages:
           julia> import Pkg
           julia> Pkg.Registry.update()
           julia> Pkg.add([Pkg.PackageSpec(name="PythonCall", uuid="6099a3de-0909-46bc-b1f4-468b9a2dfc0d")])
           julia> Pkg.resolve()
           julia> Pkg.precompile()
    Updating registry at `~/.julia/registries/General.toml`
   Resolving package versions...
   Installed Scratch ───────────────────── v1.2.1
   Installed MicroMamba ────────────────── v0.1.14
   Installed Parsers ───────────────────── v2.8.1
   Installed JSON3 ─────────────────────── v1.14.0
   Installed Preferences ───────────────── v1.4.3
   Installed Tables ────────────────────── v1.12.0
   Installed PythonCall ────────────────── v0.9.23
   Installed DataAPI ───────────────────── v1.16.0
   Installed DataValueInterfaces ───────── v1.0.0
   Installed IteratorInterfaceExtensions ─ v1.0.0
   Installed JLLWrappers ───────────────── v1.6.0
   Installed PrecompileTools ───────────── v1.2.1
   Installed TableTraits ───────────────── v1.0.1
   Installed Pidfile ───────────────────── v1.3.0
   Installed micromamba_jll ────────────── v1.5.8+0
   Installed OrderedCollections ────────── v1.6.3
   Installed Requires ──────────────────── v1.3.0
   Installed MacroTools ────────────────── v0.5.13
   Installed UnsafePointers ────────────── v1.0.0
   Installed CondaPkg ──────────────────── v0.2.23
   Installed StructTypes ───────────────── v1.11.0
    Updating `~/Projects/testvenv/julia_env/Project.toml`
  [6099a3de] + PythonCall v0.9.23
    Updating `~/Projects/testvenv/julia_env/Manifest.toml`
  [992eb4ea] + CondaPkg v0.2.23
  [9a962f9c] + DataAPI v1.16.0
  [e2d170a0] + DataValueInterfaces v1.0.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.6.0
  [0f8b85d8] + JSON3 v1.14.0
  [1914dd2f] + MacroTools v0.5.13
  [0b3b1443] + MicroMamba v0.1.14
  [bac558e1] + OrderedCollections v1.6.3
  [69de0a69] + Parsers v2.8.1
  [fa939f87] + Pidfile v1.3.0
  [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [6099a3de] + PythonCall v0.9.23
  [ae029012] + Requires v1.3.0
  [6c6a2e73] + Scratch v1.2.1
  [856f2bd8] + StructTypes v1.11.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [e17b2a0c] + UnsafePointers v1.0.0
  [f8abcde7] + micromamba_jll v1.5.8+0
  [0dad84c5] + ArgTools v1.1.2
   Installed IntegerMathUtils ──────────────────── v0.1.2
   Installed OrdinaryDiffEqDifferentiation ─────── v1.1.0
   Installed IntervalSets ──────────────────────── v0.7.10
   Installed Latexify ──────────────────────────── v0.16.5
   Installed OrdinaryDiffEqHighOrderRK ─────────── v1.1.0
   Installed OrdinaryDiffEqFeagin ──────────────── v1.1.0
   Installed CPUSummary ────────────────────────── v0.2.6
   Installed RuntimeGeneratedFunctions ─────────── v0.5.13
   Installed Optim ─────────────────────────────── v1.9.4
   Installed TermInterface ─────────────────────── v2.0.0
   Installed VertexSafeGraphs ──────────────────── v0.2.0
   Installed SymbolicUtils ─────────────────────── v3.7.1
   Installed Primes ────────────────────────────── v0.5.6
   Installed RecipesBase ───────────────────────── v1.3.4
   Installed ConcreteStructs ───────────────────── v0.2.3
   Installed TruncatedStacktraces ──────────────── v1.4.0
   Installed BlockArrays ───────────────────────── v1.1.1
   Installed URIs ──────────────────────────────── v1.5.1
   Installed HostCPUFeatures ───────────────────── v0.1.17
   Installed PoissonRandom ─────────────────────── v0.4.4
   Installed Unityper ──────────────────────────── v0.1.6
   Installed SymbolicIndexingInterface ─────────── v0.3.31
   Installed LaTeXStrings ──────────────────────── v1.3.1
   Installed TestItems ─────────────────────────── v1.0.0
   Installed FillArrays ────────────────────────── v1.13.0
   Installed ForwardDiff ───────────────────────── v0.10.36
   Installed QuadGK ────────────────────────────── v2.11.1
   Installed ResettableStacks ──────────────────── v1.1.1
   Installed FastBroadcast ─────────────────────── v0.3.5
   Installed OrdinaryDiffEqSymplecticRK ────────── v1.1.0
   Installed Distributions ─────────────────────── v0.25.112
   Installed OrdinaryDiffEqDefault ─────────────── v1.1.0
   Installed Parameters ────────────────────────── v0.12.3
   Installed CSTParser ─────────────────────────── v3.4.3
   Installed OrdinaryDiffEqNordsieck ───────────── v1.1.0
   Installed DynamicQuantities ─────────────────── v1.1.0
   Installed OrdinaryDiffEqIMEXMultistep ───────── v1.1.0
   Installed RecursiveFactorization ────────────── v0.2.23
   Installed SortingAlgorithms ─────────────────── v1.2.1
   Installed SparseDiffTools ───────────────────── v2.22.0
   Installed Sparspak ──────────────────────────── v0.3.9
  Downloaded artifact: Sundials
  Downloaded artifact: Rmath
  Downloaded artifact: oneTBB
  Downloaded artifact: OpenSpecFun
    Updating `~/.julia/environments/diffeqpy/Project.toml`
  [0c46a032] + DifferentialEquations v7.14.0
  [961ee093] + ModelingToolkit v9.43.0
  [6099a3de] + PythonCall v0.9.23
    Updating `~/.julia/environments/diffeqpy/Manifest.toml`
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  [7d9f7c33] + Accessors v0.1.38
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⌅ [459566f4] + DiffEqCallbacks v3.9.1
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  [becaefa8] + OrdinaryDiffEqExtrapolation v1.1.0
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  [521117fe] + OrdinaryDiffEqLinear v1.1.0
  [1344f307] + OrdinaryDiffEqLowOrderRK v1.2.0
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  [04162be5] + OrdinaryDiffEqQPRK v1.1.0
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  [43230ef6] + OrdinaryDiffEqRosenbrock v1.2.0
  [2d112036] + OrdinaryDiffEqSDIRK v1.1.0
  [669c94d9] + OrdinaryDiffEqSSPRK v1.2.0
  [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.1.0
  [358294b1] + OrdinaryDiffEqStabilizedRK v1.1.0
  [fa646aed] + OrdinaryDiffEqSymplecticRK v1.1.0
  [b1df2697] + OrdinaryDiffEqTsit5 v1.1.0
  [79d7bb75] + OrdinaryDiffEqVerner v1.1.1
  [90014a1f] + PDMats v0.11.31
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  [d96e819e] + Parameters v0.12.3
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⌅ [fb77eaff] + Sundials_jll v5.2.3+0
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  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
Precompiling project...
  306 dependencies successfully precompiled in 184 seconds. 59 already precompiled.
  2 dependencies had output during precompilation:
┌ MKL_jll
│   Downloading artifact: IntelOpenMP
└
┌ LinearSolve
│   Downloading artifact: MKL
└
Traceback (most recent call last):
  File "/home/lteichro/Projects/ni-coils/test.py", line 1, in <module>
    from diffeqpy import de
  File "/home/lteichro/Projects/testvenv/lib/python3.12/site-packages/diffeqpy/de.py", line 5, in <module>
    de.jit = Main.seval("jit(x) = typeof(x).name.wrapper(ModelingToolkit.complete(ModelingToolkit.modelingtoolkitize(x)), x.u0, x.tspan, x.p)") # kinda hackey
    ^^^^^^
  File "/home/lteichro/.julia/packages/PythonCall/Nr75f/src/JlWrap/any.jl", line 254, in __setattr__
    self._jl_callmethod($(pyjl_methodnum(pyjlany_setattr)), k, v)
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: Julia: Global DifferentialEquations.jit does not exist and cannot be assigned. Declare it using `global` before attempting assignment.
@lte678 lte678 added the bug Something isn't working label Oct 9, 2024
@mcarobene-id
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mcarobene-id commented Oct 9, 2024 •
edited
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Hi @lte678 , I've just opened a duplicate issue as I hadn't seen this one you opened. Just wanted to let you know that I have found I am still able to use diffeqpy.de if I use Julia v1.10.5 rather than the new 1.11.0 release, in case you need a short-term fix for your work :)

@lte678
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lte678 commented Oct 9, 2024

I can confirm @mcarobene-id

@ChrisRackauckas
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Ahh Julia v1.11 just came out yesterday, and so that definitely is related.

@abelsiqueira is there a way to make jill.install_julia grab LTS?

@mcarobene-id mcarobene-id mentioned this issue Oct 9, 2024
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@abelsiqueira
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You want @johnnychen94, I only created jill.sh

@ChrisRackauckas
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The new version 2.4.2 should have this fixed by ensuring the Julia installation is fixed at LTS.

Will have a separate issue about updating.

https://pypi.org/manage/project/diffeqpy/release/2.4.2/

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@abelsiqueira @ChrisRackauckas @lte678 @mcarobene-id