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Dorado container

Main tool: dorado

Code repository: https://github.com/nanoporetech/dorado

Basic information on how to use this tool:

  • executable: dorado
  • help: -h, --help
  • version: -v, --version
  • description: Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads.

Additional information:

  • This container does not contain any models. They must be downloaded at runtime.
  • Cuda drivers >= 12.2.0 are required for gpu support.
  • Use "--gpus all" flag to activate gpu support in docker. E.g. docker run -it --gpus all staphb/dorado:0.9.0-cuda12.2.0-no_model bash

Full documentation: https://dorado-docs.readthedocs.io/en/latest/

Example Usage

# list models
dorado download --list
# download a single model
dorado download --model {model_name}
# download all models
dorado download
# basecaller
dorado basecaller {model} {data} > calls.bam