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test1.cwl
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$graph:
- baseCommand: test1
class: CommandLineTool
hints:
DockerRequirement:
dockerPull: aaa
id: clt
inputs:
input_reference:
inputBinding:
position: 1
prefix: --input_reference
type: Directory
aoi:
inputBinding:
position: 2
prefix: --aoi
type: string?
conf_file:
inputBinding:
position: 3
prefix: --file
type: File?
mode:
inputBinding:
position: 4
prefix: --mode
type:
- 'null'
- symbols: &id001
- local
- ftp
type: enum
outputs:
results:
outputBinding:
glob: .
type: Directory
requirements:
EnvVarRequirement:
envDef:
PATH: /srv/conda/bin:/srv/conda/envs/env_click2cwl/bin:/srv/conda/condabin:/tmp/yarn--1608563737914-0.160735929787871:/srv/theia/node_modules/.bin:/home/jovyan/.config/yarn/link/node_modules/.bin:/home/jovyan/.yarn/bin:/home/jovyan/.nvm/versions/node/v12.20.0/libexec/lib/node_modules/npm/bin/node-gyp-bin:/home/jovyan/.nvm/versions/node/v12.20.0/lib/node_modules/npm/bin/node-gyp-bin:/home/jovyan/.nvm/versions/node/v12.20.0/bin:/home/jovyan/.nvm/versions/node/v12.20.0/bin:/srv/conda/envs/notebook/bin:/home/jovyan/.local/bin:/srv/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
a: '1'
b: '2'
ResourceRequirement:
ramMax: 1
ramMin: 2
stderr: std.err
stdout: std.out
- class: Workflow
doc: hello Im the doc of Workflow class
id: test1
inputs:
input_reference:
doc: this input reference
label: this input reference
type: Directory
aoi:
doc: help for the area of interest
label: help for the area of interest
type: string?
conf_file:
doc: help for the conf file
label: help for the conf file
type: File?
mode:
doc: null
label: null
type:
- 'null'
- symbols: *id001
type: enum
label: hello Im the label of Workflow class
outputs:
- id: wf_outputs
outputSource:
- step_1/results
type: Directory
steps:
step_1:
in:
input_reference: input_reference
aoi: aoi
conf_file: conf_file
mode: mode
out:
- results
run: '#clt'
cwlVersion: v1.0