DESCRIPTION

Package: metaX
Type: Package
Title: A flexible and comprehensive software for processing omics data.
Version: 2.0.0
Date: 2015-02-10
Author: Bo Wen <wenbostar@gmail.com>
Maintainer: Bo Wen <wenbostar@gmail.com>
Description: The package provides a integrated pipeline for mass spectrometry-
    based metabolomic and proteomics data analysis. It includes the stages peak 
    detection, data preprocessing, normalization, missing value imputation, 
    univariate statistical analysis, multivariate statistical analysis such as 
    PCA and PLS-DA, metabolite identification, pathway analysis, power analysis, 
    feature selection and modeling, data quality assessment.
Depends:
    R (>= 3.2.0),VennDiagram,pROC,SSPA,methods
Imports:
    sva,Nozzle.R1,ggplot2,parallel,pcaMethods,reshape2,plyr,BBmisc,
    mixOmics,preprocessCore,vsn,pls,impute,missForest,doParallel,DiscriMiner,
    xcms,ape,scatterplot3d,pheatmap,bootstrap,boot,caret,dplyr,stringr,
    RColorBrewer,DiffCorr,RCurl,lattice,faahKO,data.table,CAMERA,igraph,
    tidyr,scales,readr,e1071,randomForest,coop,mzR,fpc,ropls,ROCR,edgeR,
    softImpute,ComplexHeatmap,seriation
License: LGPL-2
URL: https://github.com/wenbostar/metaX
BugReports: https://github.com/wenbostar/metaX
Suggests:
    knitr,
    BiocStyle,
    R.utils,
    RUnit,BiocGenerics
VignetteBuilder: knitr
biocViews: Metabolomics, MassSpectrometry, QualityControl
RoxygenNote: 6.1.1