prefixes.py

#The point here is to keep prefixes in one place so that we can easily deal with things like PUBCHEM->PUBCHEM.COMPOUND
# In principle, we should generate this off of the context file?

MESH = 'MESH'
NCIT = 'NCIT'
CL = 'CL'
GO = 'GO'
UBERON = 'UBERON'
SNOMEDCT= 'SNOMEDCT'
OMIM = 'OMIM'
OMIMPS = 'OMIM.PS'
ENSEMBL = 'ENSEMBL'
NCBIGENE = 'NCBIGene'
WORMBASE = 'WormBase'
MGI ='MGI'
ZFIN='ZFIN'
DICTYBASE='dictyBase'
WORMBASE='WormBase'
FLYBASE='FB'
RGD='RGD'
SGD='SGD'
POMBASE='POMBASE'
KEGGGENE='KEGG.GENE'
KEGGDISEASE='KEGG.DISEASE'
KEGGPATHWAY='KEGG.PATHWAY'
KEGGREACTION = 'KEGG.REACTION'
HGNC='HGNC'
UMLS = 'UMLS'
RXCUI = 'RXCUI'
NCIT = 'NCIT'
PR = 'PR'
UNIPROTKB = 'UniProtKB'
MONDO = 'MONDO'
DOID = 'DOID'
OIO = 'OIO'
ORPHANET = 'orphanet'
HP = 'HP'
MEDDRA = 'MEDDRA'
EFO = 'EFO'
ICD9 = 'ICD9'
ICD10 = 'ICD10'
ICD10CM = 'ICD10CM'
ICD0 = 'ICD0'
RHEA = 'RHEA'
EC = 'EC'
PANTHERPATHWAY='PANTHER.PATHWAY'
SMPDB = 'SMPDB'
REACT = 'REACT'
WIKIPATHWAYS = 'WIKIPATHWAYS'
WIKIDATA = 'WIKIDATA'
TCDB = 'TCDB'
PUBCHEMCOMPOUND='PUBCHEM.COMPOUND'
CHEMBLCOMPOUND='CHEMBL.COMPOUND'
UNII ='UNII'
CHEBI='CHEBI'
DRUGBANK='DRUGBANK'
CAS='CAS'
DRUGCENTRAL='DrugCentral'
GTOPDB='GTOPDB'
HMDB='HMDB'
KEGGCOMPOUND='KEGG.COMPOUND'
KEGGGLYCAN = 'KEGG.GLYCAN'
KEGGDRUG = 'KEGG.DRUG'
KEGGDGROUP = 'KEGG.DGROUP'
KEGGENVIRON = 'KEGG.ENVIRON'
CHEMBANK='ChemBank'
AEOLUS='Aeolus'
PUBCHEMSUBSTANCE='PUBCHEM.SUBSTANCE'
SIDERDRUG='SIDER.DRUG'
INCHI='INCHI'
INCHIKEY='INCHIKEY'
NCBITAXON='NCBITaxon'
HGNCFAMILY='HGNC.FAMILY'
PANTHERFAMILY='PANTHER.FAMILY'
COMPLEXPORTAL='ComplexPortal'
ICD11FOUNDATION='icd11.foundation'

PMID = 'PMID'
DOI = 'doi'
PMC = 'PMC'