fixed skipping extras

UPHL-BioNGS · Feb 13, 2024 · 6029fda · 6029fda
1 parent fdee4f5
commit 6029fda
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -36,7 +36,7 @@ profiles {
     }
   just_msa {
     params.msa                    = true
-    params.extras                 = false
+    params.skip_extras            = true
     }
   test0 {
     params.sra_accessions         = ["SRR11725329", "SRR13643280", "SRR14436834", "SRR14634837", "SRR7738178", "SRR7889058"]  
@@ -53,7 +53,7 @@ profiles {
   test3 {
     params.sra_accessions         = ["SRR22314961", "SRR22314960", "SRR22314959", "SRR22314958" ]
     params.msa                    = true
-    params.extras                 = false
+    params.skip_extras            = true
     }
   test4 {
     params.sra_accessions         = ["SRR22314961", "SRR22314960", "SRR22314959", "SRR22314958" ]
@@ -64,7 +64,7 @@ profiles {
   test5 {
     params.sra_accessions         = ["SRR22314961", "SRR22314960", "SRR22314959", "SRR22314958" ]
     params.msa                    = true
-    params.fastani_include        = false
+    params.exclude_top_hit        = true
     }
   uphl {
     includeConfig './configs/UPHL.config'