diff --git a/nextflow.config b/nextflow.config index 7b4b7d8..f20789a 100644 --- a/nextflow.config +++ b/nextflow.config @@ -36,7 +36,7 @@ profiles { } just_msa { params.msa = true - params.extras = false + params.skip_extras = true } test0 { params.sra_accessions = ["SRR11725329", "SRR13643280", "SRR14436834", "SRR14634837", "SRR7738178", "SRR7889058"] @@ -53,7 +53,7 @@ profiles { test3 { params.sra_accessions = ["SRR22314961", "SRR22314960", "SRR22314959", "SRR22314958" ] params.msa = true - params.extras = false + params.skip_extras = true } test4 { params.sra_accessions = ["SRR22314961", "SRR22314960", "SRR22314959", "SRR22314958" ] @@ -64,7 +64,7 @@ profiles { test5 { params.sra_accessions = ["SRR22314961", "SRR22314960", "SRR22314959", "SRR22314958" ] params.msa = true - params.fastani_include = false + params.exclude_top_hit = true } uphl { includeConfig './configs/UPHL.config'