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Update 20240306#182

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Merged

erinyoung merged 25 commits intomainUPHL-BioNGS/Grandeur:mainfrom update-20240306UPHL-BioNGS/Grandeur:update-20240306Copy head branch name to clipboardMar 15, 2024

+851-158

Commits

Commits on Mar 12, 2024

• removed versions

  erinyoung

  committed
  8306e9c

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• updated mlst to 2.23.0-2024-03-11

  erinyoung

  committed
  15c3c06

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• update to 3.12.8-2024-01-31.1

  erinyoung

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  f0c4cd3

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• added saveAs

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  08574e4

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• moved container to staphb

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  9cf2b78

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• added saveAs

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  020d94c

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• added saveAs

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  9d42197

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• added software versions and multiqc

  erinyoung

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  38dae3d

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• removed sra versions

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  f1c8fb5

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• publish software_versions.yml

  erinyoung

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  70bc2ff

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• update to 4.0.20240312

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  11f4849

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Commits on Mar 13, 2024

• added custom headers

  erinyoung

  committed
  6e94f09

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• attempted to add amrfinder columns

  erinyoung

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  1c08b25

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• fixed mlst columns

  erinyoung

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  a91a83e

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• removed comment

  erinyoung

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  e2fca46

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• Update test.yml to account for skip extras

  erinyoung

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  159aa16

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• removed ignore

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  87fa91e

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• core_genome_evaluation bargraph

  erinyoung

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  516a940

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• Merge remote-tracking branch 'refs/remotes/origin/update-20240306' into update-20240306

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  c096fd0

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Commits on Mar 14, 2024

• Commented out GCA_904864595.1

  erinyoung

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  cc2bad2

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• commented out GCA_904864595.1

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  396b5b7

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Commits on Mar 15, 2024

• Update github_actions.config

  erinyoung

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  7e551e5

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• Update github_actions.config

  erinyoung

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  ebdc5c4

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• fixed config file

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  committed
  113e3ec

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• added wildcard to pattern

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  committed
  55f61bb

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