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Update 20240417#191

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Merged

erinyoung merged 31 commits intomainUPHL-BioNGS/Grandeur:mainfrom update-20240417UPHL-BioNGS/Grandeur:update-20240417Copy head branch name to clipboardApr 25, 2024

+208-44

Commits

Commits on Apr 17, 2024

• updated to 3.12.8-2024-01-31.1_2

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  4962916

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• updated to 39.06

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  abf67e4

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• updated to 16.10.3

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  94da1a4

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• update to 2.1.6_2024-03-07

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  a1d1f83

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• update to 2.23.0-2024-04-01

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  447c832

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• updated to 1.3.1

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  e322bb1

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• updated to 2.0.2

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  d2143a0

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• specified core alignment

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  0308527

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• update to version 4.1.20240417

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  7e9e58c

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• fixed phix ref

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  6a9f8b8

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Commits on Apr 23, 2024

• incremented version

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  e2bfdf7

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• changed quast files

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  87f976a

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• matched now compressed

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  b4b613e

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• removed fastq count

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  ed7b2b6

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• renamed files

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  307b35d

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• added reads to quast

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  bd70b46

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• trying countfastq

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  7995f6a

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Commits on Apr 24, 2024

• concat two quast results together

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  a166af5

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• adjusting fasta message

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  1610e02

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• re-added passed reads

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  9a78ae3

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• removes spaces

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  84c195a

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• added roary test

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  f4acb8f

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• added test for roary

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  7f81ee5

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• added roary back

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  a235f57

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• added roary back

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  0a29b2f

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• removed countFastq

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  afbe0a6

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• added roary back in

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  22e6897

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• removed comment

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  031e2fd

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• reverted to version 39.01

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  0252e5b

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• removed first

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  a49ba20

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• added ch_bams

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  7a742fa

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